RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2533
(684 letters)
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 105 bits (264), Expect = 2e-27
Identities = 52/71 (73%), Positives = 62/71 (87%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + RT +VT
Sbjct: 32 GAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVT 91
Query: 173 LEIAKQGAIYH 183
LE+AKQGAI
Sbjct: 92 LEVAKQGAIRR 102
Score = 75.5 bits (186), Expect = 8e-17
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
+GRL AGDQLL VDG+SLVG++QE+AAE + RT +VTLE+AKQGAI
Sbjct: 53 VDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRR 102
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 103 bits (258), Expect = 3e-26
Identities = 23/86 (26%), Positives = 38/86 (44%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G Q +YI V A +G + AGD++ V+G+S+ G T+ + A+ + VT
Sbjct: 39 GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 98
Query: 173 LEIAKQGAIYHGLATLLSQPSPVMTR 198
+ K A L L + P +
Sbjct: 99 IHYNKLQADPKQLEVLFNGPGIESVK 124
Score = 78.6 bits (194), Expect = 1e-17
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
+G + AGD++ V+G+S+ G T+ + A+ + VT+ K A L L + P
Sbjct: 60 LDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPG 119
Query: 346 PVMTR 350
+
Sbjct: 120 IESVK 124
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 100 bits (250), Expect = 2e-24
Identities = 45/225 (20%), Positives = 73/225 (32%), Gaps = 59/225 (26%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G +D + ++ +GG A + +L GD + V+G +L ++ L G V
Sbjct: 28 GIDKD-GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVV 86
Query: 173 LEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVG--- 229
LE+ + P + V + LH N G
Sbjct: 87 LEVEYE------------LPPVSIQGSSVMFRTVEV-----------TLHKEGNTFGFVI 123
Query: 230 -GSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNG 288
G H + V++ PAD + G
Sbjct: 124 RGGAHDDRNKSRPV----VITCVRPG--------------GPAD-------------REG 152
Query: 289 RLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
++ GD+LL VDG L+G T +A L + G TL I ++
Sbjct: 153 TIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSV 197
Score = 76.3 bits (188), Expect = 4e-16
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
+ I V GG AD G ++ GD+LL VDG L+G T +A L + G
Sbjct: 127 AHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186
Query: 171 VTLEIAKQGAI 181
TL I ++
Sbjct: 187 ATLLIEYDVSV 197
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 95.1 bits (237), Expect = 1e-23
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
IY+ ++ GGAA +GRLQ GD+LL V+ SL +T E+A L T +V L+
Sbjct: 50 IPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK 109
Query: 175 IAKQGAIY 182
+ K IY
Sbjct: 110 VGKPTTIY 117
Score = 68.2 bits (167), Expect = 4e-14
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
++GRLQ GD+LL V+ SL +T E+A L T +V L++ K IY
Sbjct: 69 KDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY 117
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 92.7 bits (231), Expect = 5e-23
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
++ G+++ +VKGG ADA+GRL GDQ+L V+G+ + TQE A L + VTL
Sbjct: 24 GKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTL 83
Query: 174 EIAKQ 178
E+ +
Sbjct: 84 EVGRI 88
Score = 61.9 bits (151), Expect = 3e-12
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+GRL GDQ+L V+G+ + TQE A L + VTLE+ +
Sbjct: 44 ADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRI 88
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 92.8 bits (231), Expect = 7e-23
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
M ++ + GIY+KS++ G AA +GR++ D++L+VD ++ G+ Q E L G
Sbjct: 34 MRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAG 93
Query: 169 PIVTLEIAKQ 178
V L + ++
Sbjct: 94 NPVRLLLIRR 103
Score = 63.9 bits (156), Expect = 1e-12
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+GR++ D++L+VD ++ G+ Q E L G V L + ++
Sbjct: 59 LDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRR 103
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 92.4 bits (230), Expect = 9e-23
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
AG ++LGI++K+V +GGAA +GR+Q DQ+++VDG SLVG+TQ AA L T V
Sbjct: 33 ADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNV 92
Query: 172 TLEIAKQ 178
I ++
Sbjct: 93 RFVIGRE 99
Score = 64.3 bits (157), Expect = 7e-13
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GR+Q DQ+++VDG SLVG+TQ AA L T V I ++
Sbjct: 55 RDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 99
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 91.9 bits (229), Expect = 1e-22
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
+ GI++KS+ K A + +GR+Q GDQ++ VDG +L G T ++A E L TG V L +
Sbjct: 31 EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 90
Query: 177 KQG 179
++G
Sbjct: 91 RRG 93
Score = 66.1 bits (162), Expect = 1e-13
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
+GR+Q GDQ++ VDG +L G T ++A E L TG V L + ++G
Sbjct: 48 HDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 91.9 bits (229), Expect = 1e-22
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
GIY+K+V+ GAA+++GR+ GD++L V+G SL G T ++A E L TG +V
Sbjct: 27 NTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 86
Query: 173 LEIAKQ 178
L + K
Sbjct: 87 LLLEKG 92
Score = 65.3 bits (160), Expect = 2e-13
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 48 SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 91.6 bits (228), Expect = 2e-22
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
GIY+K+V+ GAA+++GR+ GD++L V+G SL G T ++A E L TG +V
Sbjct: 36 NTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 95
Query: 173 LEIAKQ 178
L + K
Sbjct: 96 LLLEKG 101
Score = 64.7 bits (158), Expect = 5e-13
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 57 SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 101
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 91.2 bits (227), Expect = 2e-22
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
IYI +++GGAA +GRLQ GD+LL V+ +L + E+A L T +V L+
Sbjct: 29 IPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK 88
Query: 175 IAKQGA 180
+AK G+
Sbjct: 89 VAKPGS 94
Score = 65.4 bits (160), Expect = 2e-13
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
++GRLQ GD+LL V+ +L + E+A L T +V L++AK G+
Sbjct: 48 KDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 90.8 bits (226), Expect = 3e-22
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
D G++I +++GG A +GRL + D++L ++G L T E AA+ + +G V L
Sbjct: 25 RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLT 84
Query: 175 IAKQG 179
IA+ G
Sbjct: 85 IARPG 89
Score = 63.1 bits (154), Expect = 2e-12
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
Q+GRL + D++L ++G L T E AA+ + +G V L IA+ G
Sbjct: 44 QDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPG 89
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 90.6 bits (225), Expect = 6e-22
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
+++ + GIY+ + + GAA +GRLQ GD++L V+GQ L + + A + G
Sbjct: 38 TDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGY 97
Query: 170 IVTLEIAKQGAIYHGLATLLSQPSP 194
V+L + + + +G +S PS
Sbjct: 98 AVSLRVQHRLQVQNG---PISGPSS 119
Score = 65.2 bits (159), Expect = 6e-13
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
+GRLQ GD++L V+GQ L + + A + G V+L + + + +G +S PS
Sbjct: 62 LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNG---PISGPS 118
Query: 346 P 346
Sbjct: 119 S 119
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 89.7 bits (223), Expect = 7e-22
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
IY+ +++GGAA +G+LQ GD+LL V+ SL +T E+A L T V L+
Sbjct: 29 IPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLK 88
Query: 175 IAKQGAIY 182
+AK ++Y
Sbjct: 89 VAKPTSMY 96
Score = 64.3 bits (157), Expect = 7e-13
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
++G+LQ GD+LL V+ SL +T E+A L T V L++AK ++Y
Sbjct: 48 KDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 90.1 bits (224), Expect = 7e-22
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
G+ G+ ++++V GG AD +GRLQ GD +LK+ G ++ G+T E+ A+ L G V +
Sbjct: 35 GKTS-GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRML 93
Query: 175 IAKQGAIYHGLATLLSQPSP 194
+A+ A G ++ S PS
Sbjct: 94 VARDPA---GDISVTSGPSS 110
Score = 65.1 bits (159), Expect = 4e-13
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
++GRLQ GD +LK+ G ++ G+T E+ A+ L G V + +A+ A G ++ S PS
Sbjct: 53 RDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPA---GDISVTSGPS 109
Query: 346 P 346
Sbjct: 110 S 110
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 90.1 bits (224), Expect = 7e-22
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G+YI++++ G A A+GRL GD++L+V+G SL+G+ +A + + G +
Sbjct: 30 HTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMR 89
Query: 173 LEIAKQ 178
+AK
Sbjct: 90 FLVAKS 95
Score = 62.7 bits (153), Expect = 2e-12
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+GRL GD++L+V+G SL+G+ +A + + G + +AK
Sbjct: 51 ADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS 95
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 90.1 bits (224), Expect = 8e-22
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
G ++LGI++K+V +GGAA +GR+Q D L++VDG SLVG+TQ AA L T V
Sbjct: 28 ADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRV 87
Query: 172 TLEIAKQ 178
I ++
Sbjct: 88 RFMIGRE 94
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GR+Q D L++VDG SLVG+TQ AA L T V I ++
Sbjct: 50 RDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 94
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 89.8 bits (223), Expect = 1e-21
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G I I V + GAA +GRL AGDQ+L+V+G L + E+A L +T V
Sbjct: 37 GKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVR 96
Query: 173 LEIAKQGAIYH 183
L + + A Y
Sbjct: 97 LVVYRDEAHYR 107
Score = 63.6 bits (155), Expect = 2e-12
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
++GRL AGDQ+L+V+G L + E+A L +T V L + + A Y
Sbjct: 58 RDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYR 107
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 89.8 bits (223), Expect = 2e-21
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
+ GIY+KSV+ G AA NG +Q D+++ VDG ++ G E L G +V L
Sbjct: 42 TGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLT 101
Query: 175 IAKQGAIYHGLATLLSQPSPVMT 197
+ ++ + L PS T
Sbjct: 102 LVRRKT--SSSTSPLEPPSDRGT 122
Score = 63.2 bits (154), Expect = 3e-12
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
NG +Q D+++ VDG ++ G E L G +V L + ++ + L PS
Sbjct: 61 HNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKT--SSSTSPLEPPS 118
Query: 346 PVMTRA 351
T +
Sbjct: 119 DRGTVS 124
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 88.1 bits (219), Expect = 3e-21
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G+ I I V + GAA +GRL AGDQ+L+V+G L T ++A L +T V
Sbjct: 24 GSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 83
Query: 173 LEIAKQGAIYH 183
L + + A Y
Sbjct: 84 LTLYRDEAPYK 94
Score = 63.1 bits (154), Expect = 2e-12
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
++GRL AGDQ+L+V+G L T ++A L +T V L + + A Y
Sbjct: 45 KDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYK 94
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 87.4 bits (217), Expect = 5e-21
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 103 EAKLSEMSEEGAG----QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQE 158
L + + + G + +G I +++G + + +LQ GD + K +G +L G+ +
Sbjct: 5 NVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ 64
Query: 159 KAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPV 195
V++E+ + G +L+ +
Sbjct: 65 VCYALFKGANGKVSMEVTRPKPGSGGSGSLVPRLLRR 101
Score = 62.0 bits (151), Expect = 4e-12
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
+ +LQ GD + K +G +L G+ + V++E+ + G +L+ +
Sbjct: 40 IDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSGGSGSLVPRLL 99
Query: 346 PV 347
Sbjct: 100 RR 101
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 87.4 bits (217), Expect = 7e-21
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
GI+I V GAA +GRL+ G +LL+V+ QSL+G+T +A + L G +T+
Sbjct: 40 DPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99
Query: 175 IAKQ 178
+
Sbjct: 100 VCDG 103
Score = 61.6 bits (150), Expect = 7e-12
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GRL+ G +LL+V+ QSL+G+T +A + L G +T+ +
Sbjct: 59 RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 87.1 bits (216), Expect = 8e-21
Identities = 16/74 (21%), Positives = 35/74 (47%)
Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
+ G GI++ +V G A G LQ D++++V+G+ L T ++A E
Sbjct: 29 RPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT 88
Query: 167 TGPIVTLEIAKQGA 180
+ +++ ++ +
Sbjct: 89 AKEPIVVQVLRRTS 102
Score = 59.7 bits (145), Expect = 3e-11
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
+ G LQ D++++V+G+ L T ++A E + +++ ++ +
Sbjct: 56 KEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 88.9 bits (220), Expect = 1e-20
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
+ G ++LGI++K+V +GGAA +GR+Q D L++VDG SLVG+TQ AA L T
Sbjct: 102 AGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKG 161
Query: 170 IVTLEIAKQ 178
V I ++
Sbjct: 162 RVRFMIGRE 170
Score = 62.7 bits (152), Expect = 1e-11
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GR+Q D L++VDG SLVG+TQ AA L T V I ++
Sbjct: 126 RDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 87.1 bits (216), Expect = 1e-20
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
+ R+ I++ + G A A+GR++ GD+LL+++ Q L G + + A+ + V
Sbjct: 45 NKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVK 104
Query: 173 LEIAKQGAIYHGLATLLSQPSP 194
L + + +A S PS
Sbjct: 105 LVFIRNEDAVNQMA---SGPSS 123
Score = 60.1 bits (146), Expect = 3e-11
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
+GR++ GD+LL+++ Q L G + + A+ + V L + + +A S PS
Sbjct: 66 ADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMA---SGPS 122
Query: 346 P 346
Sbjct: 123 S 123
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 86.7 bits (215), Expect = 1e-20
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
+ L IY+ SV GG +GR++ GD LL VDG L +++ +A L RT +
Sbjct: 47 SHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIV 106
Query: 173 LEIA--KQGAI 181
L+ K+G+I
Sbjct: 107 LKALEVKEGSI 117
Score = 60.5 bits (147), Expect = 2e-11
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA--KQGAI 333
++GR++ GD LL VDG L +++ +A L RT + L+ K+G+I
Sbjct: 68 RDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGSI 117
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 86.2 bits (214), Expect = 1e-20
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
G+ GI+I ++ GG AD +G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 31 GEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII 90
Query: 175 IAKQGAIYH 183
+ Y
Sbjct: 91 AQYKPEEYS 99
Score = 59.6 bits (145), Expect = 3e-11
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
+G L+ GDQ+L V+G L + E+AA L G VT+ + Y
Sbjct: 50 LSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS 99
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 86.6 bits (215), Expect = 1e-20
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G+ L IY+K+V GAA +GRL+ GDQ++ V+GQSL G+T E+A L RT VT
Sbjct: 47 GSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVT 106
Query: 173 LEIAKQ 178
L +
Sbjct: 107 LMVLSS 112
Score = 60.8 bits (148), Expect = 1e-11
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GRL+ GDQ++ V+GQSL G+T E+A L RT VTL +
Sbjct: 68 EDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS 112
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 86.7 bits (215), Expect = 1e-20
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
G+D GI+I ++ GG AD +G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 34 GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII 93
Query: 175 IAKQGAIYHGLATLLSQPSPVMTR 198
+ Y S
Sbjct: 94 AQYKPEEYSRFEANSRVDSSGRIV 117
Score = 59.0 bits (143), Expect = 7e-11
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
+G L+ GDQ+L V+G L + E+AA L G VT+ + Y S
Sbjct: 53 LSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112
Query: 346 PVMTR 350
Sbjct: 113 SGRIV 117
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 86.3 bits (214), Expect = 2e-20
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
G+D GI++ ++ GG AD +G L+ GD++L V+G +L T E+AA L R G VT+
Sbjct: 35 GEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIV 94
Query: 175 IAKQGAIYHGLATLLSQPSP 194
+ Y + S PS
Sbjct: 95 AQYRPEEYSRFES--SGPSS 112
Score = 58.9 bits (143), Expect = 7e-11
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
+G L+ GD++L V+G +L T E+AA L R G VT+ + Y + S PS
Sbjct: 54 LSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFES--SGPS 111
Query: 346 P 346
Sbjct: 112 S 112
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 85.8 bits (213), Expect = 2e-20
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
IY+K+++ GAA +GRL+AGD+L++V+G L G +QE+ L +
Sbjct: 33 VTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGT 92
Query: 171 VTLEIAKQGAIYH 183
V+L + +Q +H
Sbjct: 93 VSLLVFRQEEAFH 105
Score = 60.0 bits (146), Expect = 2e-11
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGAIYH 335
Q+GRL+AGD+L++V+G L G +QE+ L + V+L + +Q +H
Sbjct: 54 QDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFH 105
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 85.4 bits (212), Expect = 2e-20
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 103 EAKLSEMSEEGAG----QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQE 158
L + + + G + +G I +++G + + +LQ GD + K +G +L G+ +
Sbjct: 11 NVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ 70
Query: 159 KAAEYLVRTGPIVTLEIAK 177
+ V++E+ +
Sbjct: 71 VSYALFKGANGKVSMEVTR 89
Score = 59.2 bits (144), Expect = 4e-11
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+ +LQ GD + K +G +L G+ + + V++E+ +
Sbjct: 46 IDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTR 89
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 85.5 bits (212), Expect = 2e-20
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
+ GIY+ + + GAA +GRLQ GD++L V+GQ L + + A + G V+L
Sbjct: 33 VSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR 92
Query: 175 IAKQ 178
+ +
Sbjct: 93 VQHR 96
Score = 59.6 bits (145), Expect = 2e-11
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+GRLQ GD++L V+GQ L + + A + G V+L + +
Sbjct: 52 LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 96
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 86.4 bits (214), Expect = 2e-20
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
+ + I +++GGAA+ +G +QAGD +L V+ + LV ++ + A E L +
Sbjct: 29 RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV 88
Query: 175 I---AKQGAIYHGLATLLSQPSPVMTR 198
+ +G H T +P R
Sbjct: 89 LILRGPEGFTTHLETTFTGDGTPKTIR 115
Score = 60.3 bits (146), Expect = 3e-11
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI---AKQGAIYHGLATLLS 342
Q+G +QAGD +L V+ + LV ++ + A E L + + +G H T
Sbjct: 48 QSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 107
Query: 343 QPSPVMTR 350
+P R
Sbjct: 108 DGTPKTIR 115
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 85.1 bits (211), Expect = 4e-20
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
D GI+I ++ GGAA +GRL D +L+V+ + + +A E L GP+V L
Sbjct: 30 VPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLV 89
Query: 175 IAKQ 178
+ ++
Sbjct: 90 VRRR 93
Score = 58.9 bits (143), Expect = 5e-11
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+GRL D +L+V+ + + +A E L GP+V L + ++
Sbjct: 49 MDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 93
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 84.9 bits (210), Expect = 7e-20
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-- 168
G D LGI+IKS++ GGAA +GRL+ DQL+ V+G++L+G + +A E L R+
Sbjct: 48 SRETGTD-LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM 106
Query: 169 -----PIVTLEIAKQGAIYHG 184
++ L I ++ G
Sbjct: 107 EGNIRGMIQLVILRRSGPSSG 127
Score = 57.5 bits (139), Expect = 3e-10
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-------PIVTLEIAKQGAIYHG 336
++GRL+ DQL+ V+G++L+G + +A E L R+ ++ L I ++ G
Sbjct: 70 KDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSSG 127
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 84.3 bits (209), Expect = 7e-20
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
GI++ + +GGAA G LQ GD++L ++G + + A L P + L + ++
Sbjct: 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLERE 97
Query: 179 GA 180
Sbjct: 98 AG 99
Score = 59.7 bits (145), Expect = 3e-11
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
+ G LQ GD++L ++G + + A L P + L + ++
Sbjct: 53 RAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 83.9 bits (208), Expect = 8e-20
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
++ GI+IK +V A GRL+ GD++L ++G+ + T++ + +
Sbjct: 29 KDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFK 88
Query: 171 VTLEIAK 177
+ LEI
Sbjct: 89 IELEIQT 95
Score = 57.3 bits (139), Expect = 1e-10
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
GRL+ GD++L ++G+ + T++ + + + LEI
Sbjct: 52 LCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 83.1 bits (206), Expect = 1e-19
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G + I I S+ KGG A+ G + GD++L ++ SL G +A L G VT
Sbjct: 24 GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT 83
Query: 173 LEIAKQ 178
L+I KQ
Sbjct: 84 LKIKKQ 89
Score = 58.1 bits (141), Expect = 8e-11
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+ G + GD++L ++ SL G +A L G VTL+I KQ
Sbjct: 45 RTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ 89
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 82.7 bits (205), Expect = 1e-19
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
G + + IKS+V G A +G+++ GD ++ V+ ++G T + + + G
Sbjct: 19 GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS 78
Query: 171 VTLEIAK 177
V LE+ +
Sbjct: 79 VDLELCR 85
Score = 56.1 bits (136), Expect = 3e-10
Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 329
+G+++ GD ++ V+ ++G T + + + G V LE+ +
Sbjct: 40 LDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 83.6 bits (207), Expect = 1e-19
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSL-VGITQEKAAEYLVRTGPI 170
+ LGI+++ + +G A +GRL+ DQ+L ++GQ+L IT ++A L +
Sbjct: 42 RSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDT 101
Query: 171 VTLEIAKQ 178
V L IA+
Sbjct: 102 VQLVIARG 109
Score = 56.6 bits (137), Expect = 5e-10
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSL-VGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GRL+ DQ+L ++GQ+L IT ++A L + V L IA+
Sbjct: 64 RDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARG 109
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 83.6 bits (207), Expect = 2e-19
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
IY+K+++ GAA +GRL+AGD+L++V+G LVG +QE+ L +
Sbjct: 52 VTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGT 111
Query: 171 VTLEIAKQ 178
V+L + +Q
Sbjct: 112 VSLLVFRQ 119
Score = 57.4 bits (139), Expect = 3e-10
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQ 330
Q+GRL+AGD+L++V+G LVG +QE+ L + V+L + +Q
Sbjct: 73 QDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 82.8 bits (205), Expect = 2e-19
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G+ GI+IK V++ A NG L+ GD++++VDG L + E+A E + + G V
Sbjct: 33 SNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 92
Query: 173 LEI 175
+
Sbjct: 93 FMV 95
Score = 56.2 bits (136), Expect = 4e-10
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+NG L+ GD++++VDG L + E+A E + + G V +
Sbjct: 54 KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 83.2 bits (206), Expect = 2e-19
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
D GI+I V + G A G ++ GD+LL+V+G +L G +A E L G V +
Sbjct: 42 KGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 100
Query: 175 IAKQGAIYHG 184
+ ++ G
Sbjct: 101 VWRESGPSSG 110
Score = 57.7 bits (140), Expect = 2e-10
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHG 336
++ GD+LL+V+G +L G +A E L G V + + ++ G
Sbjct: 64 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPSSG 110
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 82.5 bits (204), Expect = 4e-19
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G+ GI+IK V++ A NG L+ GD++++VDG L + E+A E + + G V
Sbjct: 53 SNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 112
Query: 173 LEI 175
+
Sbjct: 113 FMV 115
Score = 55.9 bits (135), Expect = 8e-10
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+NG L+ GD++++VDG L + E+A E + + G V +
Sbjct: 74 KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 82.9 bits (205), Expect = 4e-19
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSL-VGITQEKAAEYLVRTGPI 170
++ I++K V G AD + RL+ DQ+L ++ L I+ ++A L +T
Sbjct: 47 RSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGS 106
Query: 171 VTLEIAKQ 178
+ L +A++
Sbjct: 107 LRLIVARE 114
Score = 55.9 bits (135), Expect = 1e-09
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSL-VGITQEKAAEYLVRTGPIVTLEIAKQ 330
++ RL+ DQ+L ++ L I+ ++A L +T + L +A++
Sbjct: 69 RDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVARE 114
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 82.5 bits (204), Expect = 5e-19
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
E +G YI ++ GG+A+ G+L G Q+L+ +G L T E+ + +
Sbjct: 41 EIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGE 100
Query: 171 VTLEI 175
+ +
Sbjct: 101 AEICV 105
Score = 54.8 bits (132), Expect = 2e-09
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
Q G+L G Q+L+ +G L T E+ + + + +
Sbjct: 64 QTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICV 105
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 81.6 bits (202), Expect = 5e-19
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G++ ++ +Y+ + + G A NGR++ GDQ+++++G+S +T +A E + G V L
Sbjct: 31 GREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRL 90
Query: 174 EIAK 177
+ +
Sbjct: 91 LLKR 94
Score = 57.0 bits (138), Expect = 2e-10
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+NGR++ GDQ+++++G+S +T +A E + G V L + +
Sbjct: 51 RNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKR 94
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 80.7 bits (200), Expect = 8e-19
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 113 GAGQDR---LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
GA DR + I SV GG AD G ++ GD+LL VDG L+G T +A L + G
Sbjct: 23 GAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ 82
Query: 170 IVTLEIA 176
L I
Sbjct: 83 EAALLIE 89
Score = 57.2 bits (139), Expect = 2e-10
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
+ G ++ GD+LL VDG L+G T +A L + G L I
Sbjct: 47 REGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIE 89
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 81.8 bits (202), Expect = 9e-19
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 16/116 (13%)
Query: 80 PGTPPNRLDSSMKSHSVRDML--RQEAKLSEMSEEGAG------------QDRLGIYIKS 125
P S + +L ++ S + GA RL +I
Sbjct: 12 DKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITK 71
Query: 126 VVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQG 179
V KG AD G L+ GD++L+ +G+ L G T E+ + + P V L +++ G
Sbjct: 72 VKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127
Score = 52.1 bits (125), Expect = 2e-08
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQG 331
G L+ GD++L+ +G+ L G T E+ + + P V L +++ G
Sbjct: 80 TVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 80.4 bits (199), Expect = 1e-18
Identities = 27/65 (41%), Positives = 34/65 (52%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G + IYI V+ GG AD +G L+ GDQLL V+G S+ G EKA E L V
Sbjct: 24 GGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVK 83
Query: 173 LEIAK 177
L +
Sbjct: 84 LVVRS 88
Score = 56.5 bits (137), Expect = 3e-10
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
++G L+ GDQLL V+G S+ G EKA E L V L +
Sbjct: 45 RHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 81.7 bits (202), Expect = 1e-18
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
G + + +KSV+ G A +G+++ GD ++ ++ ++G T + V G
Sbjct: 38 GGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQS 97
Query: 171 VTLEIAKQ 178
V L + +
Sbjct: 98 VNLVLCRG 105
Score = 55.5 bits (134), Expect = 1e-09
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQ 330
Q+G+++ GD ++ ++ ++G T + V G V L + +
Sbjct: 59 QDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 80.8 bits (200), Expect = 1e-18
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 115 GQD---RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
G+D + ++ ++K G A GRL+ GD +L ++G+S G+T +A E + GP +
Sbjct: 31 GRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQL 90
Query: 172 TLEIAK 177
L I +
Sbjct: 91 HLVIRR 96
Score = 56.5 bits (137), Expect = 3e-10
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+ GRL+ GD +L ++G+S G+T +A E + GP + L I +
Sbjct: 53 RCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 96
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 80.9 bits (200), Expect = 1e-18
Identities = 15/67 (22%), Positives = 31/67 (46%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G+ + I+I + G A +L+ GD+++ + G S G+T +A L +
Sbjct: 47 GSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIE 106
Query: 173 LEIAKQG 179
+++ G
Sbjct: 107 MQVVAGG 113
Score = 57.0 bits (138), Expect = 4e-10
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
Q +L+ GD+++ + G S G+T +A L + +++ G
Sbjct: 68 QTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGG 113
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 80.0 bits (198), Expect = 1e-18
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--I 170
G + IYI +V GAAD +GRL++GD+L+ VDG ++G + + + + +
Sbjct: 21 GGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGH 80
Query: 171 VTLEIAKQ 178
V L + +
Sbjct: 81 VNLTVRQT 88
Score = 54.2 bits (131), Expect = 2e-09
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQ 330
+GRL++GD+L+ VDG ++G + + + + + V L + +
Sbjct: 42 TDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 80.1 bits (198), Expect = 2e-18
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP- 169
++ R I I+S+V G A+ +G L GD+L+ V+ L + +A E L P
Sbjct: 36 QDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPG 95
Query: 170 IVTLEIAK 177
+V L I
Sbjct: 96 LVHLGICS 103
Score = 53.2 bits (128), Expect = 6e-09
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAK 329
++G L GD+L+ V+ L + +A E L P +V L I
Sbjct: 59 RSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 80.2 bits (198), Expect = 2e-18
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP---IVTLEI 175
GIYI S++KGGA A+GR++ GD LL+V+ + ++ + A L + L +
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTV 92
Query: 176 AKQGA 180
AK G
Sbjct: 93 AKSGG 97
Score = 54.3 bits (131), Expect = 3e-09
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP---IVTLEIAKQGA 332
+GR++ GD LL+V+ + ++ + A L + L +AK G
Sbjct: 48 ADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG 97
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 82.6 bits (204), Expect = 3e-18
Identities = 16/100 (16%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 82 TPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAG----QDRLGIYIKSVVKGGAADANGR 137
T + ++ ++ + L + + + G + +G I +++G + + +
Sbjct: 95 TYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSK 154
Query: 138 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
LQ GD + K +G +L G+ + V++E+ +
Sbjct: 155 LQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR 194
Score = 59.5 bits (144), Expect = 3e-10
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSL--VGITQEKAAEYLVRTGP 169
G I V G A+ RL+ D + ++G + +T K + T
Sbjct: 46 GCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYE 97
Score = 58.4 bits (141), Expect = 8e-10
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+ +LQ GD + K +G +L G+ + V++E+ +
Sbjct: 151 IDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR 194
Score = 37.6 bits (87), Expect = 0.006
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 286 QNGRLQAGDQLLKVDGQSL--VGITQEKAAEYLVRTGP 321
+ RL+ D + ++G + +T K + T
Sbjct: 60 ADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYE 97
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 79.7 bits (197), Expect = 4e-18
Identities = 14/66 (21%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G + + +Y+ + + G A+ +G+++ GD++L+++G++ + +A E + G V
Sbjct: 44 GREYN-MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVR 102
Query: 173 LEIAKQ 178
L + +
Sbjct: 103 LFLKRG 108
Score = 55.4 bits (134), Expect = 1e-09
Identities = 10/45 (22%), Positives = 27/45 (60%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++G+++ GD++L+++G++ + +A E + G V L + +
Sbjct: 64 RSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRG 108
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 79.4 bits (196), Expect = 4e-18
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
+ + G++ GI+IK V++ A L+ GD++L+V G L + +A E +
Sbjct: 38 TVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN 97
Query: 167 TGPIVTLEI 175
G V +
Sbjct: 98 AGNPVVFIV 106
Score = 53.2 bits (128), Expect = 6e-09
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ L+ GD++L+V G L + +A E + G V +
Sbjct: 65 KTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 78.1 bits (193), Expect = 4e-18
Identities = 12/59 (20%), Positives = 29/59 (49%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
I++K + + A +G +Q GD +LK++G ++ A + R+ + + + +
Sbjct: 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80
Score = 56.9 bits (138), Expect = 2e-10
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++G +Q GD +LK++G ++ A + R+ + + + +
Sbjct: 36 RDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 79.8 bits (197), Expect = 5e-18
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
G + + IKS+V G A +G+++ GD ++ V+ ++G T + + + G
Sbjct: 37 GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS 96
Query: 171 VTLEIAKQ 178
V LE+ +
Sbjct: 97 VDLELCRG 104
Score = 54.4 bits (131), Expect = 4e-09
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQ 330
+G+++ GD ++ V+ ++G T + + + G V LE+ +
Sbjct: 58 LDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG 104
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 78.5 bits (194), Expect = 7e-18
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--I 170
G + I I +V+ G+AD +GRL GD+L+ VDG + G T + +
Sbjct: 29 GDEPGQ-PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQ 87
Query: 171 VTLEIAKQ 178
V L + ++
Sbjct: 88 VNLTVRRK 95
Score = 53.5 bits (129), Expect = 4e-09
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQ 330
++GRL GD+L+ VDG + G T + + V L + ++
Sbjct: 49 RDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 77.9 bits (192), Expect = 1e-17
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
+ + I +++GGAA+ +G +QAGD +L V+ + LV ++ + A E L +
Sbjct: 22 RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV 81
Query: 175 I---AKQGAIYHGLATLLSQPSPVMTR 198
+ +G H T +P R
Sbjct: 82 LILRGPEGFTTHLETTFTGDGTPKTIR 108
Score = 52.9 bits (127), Expect = 8e-09
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI---AKQGAIYHGLATLLS 342
Q+G +QAGD +L V+ + LV ++ + A E L + + +G H T
Sbjct: 41 QSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 100
Query: 343 QPSPVMTRAYK 353
+P R +
Sbjct: 101 DGTPKTIRVTQ 111
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 77.9 bits (192), Expect = 2e-17
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 82 TPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAG 141
N SM V + + L +S G Q +YI V A +G + AG
Sbjct: 14 GTENLYFQSMVPGKVT-LQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAG 72
Query: 142 DQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
D++ V+G+S+ G T+ + A+ + VT+ K
Sbjct: 73 DEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108
Score = 54.8 bits (132), Expect = 2e-09
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+G + AGD++ V+G+S+ G T+ + A+ + VT+ K
Sbjct: 65 LDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 76.7 bits (189), Expect = 4e-17
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
+ +++ I I + D +G L GD +L +DG S+ + +A + L V
Sbjct: 36 TSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVR 95
Query: 173 LEI 175
LEI
Sbjct: 96 LEI 98
Score = 52.8 bits (127), Expect = 9e-09
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
++G L GD +L +DG S+ + +A + L V LEI
Sbjct: 57 RSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEI 98
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 76.8 bits (189), Expect = 5e-17
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IV 171
G+ + I + KG A++ + +Q GD++L++ G ++ G+T+ +A + V
Sbjct: 51 GSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPV 110
Query: 172 TLEIAKQGA 180
T+ I ++
Sbjct: 111 TIVIRRKSL 119
Score = 52.5 bits (126), Expect = 2e-08
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAKQGA 332
Q+ +Q GD++L++ G ++ G+T+ +A + VT+ I ++
Sbjct: 72 QSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 75.0 bits (185), Expect = 7e-17
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G ++++ I I + KG AAD L GD +L V+G+ L T ++A + L +TG V
Sbjct: 24 GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 83
Query: 173 LEI 175
LE+
Sbjct: 84 LEV 86
Score = 51.5 bits (124), Expect = 2e-08
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
Q L GD +L V+G+ L T ++A + L +TG V LE+
Sbjct: 45 QTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 75.5 bits (186), Expect = 8e-17
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
+YI V+ GG +GRL+ GDQL+ ++ +S++G++ E+A + R
Sbjct: 42 LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK 90
Score = 51.7 bits (124), Expect = 2e-08
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 320
++GRL+ GDQL+ ++ +S++G++ E+A + R
Sbjct: 56 KDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK 90
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 77.9 bits (192), Expect = 1e-16
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
IY+ +++GGAA +GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 189
Score = 74.8 bits (184), Expect = 1e-15
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
++ D I+I ++ GGAA +GRL+ D +L V+ + +T A E L G
Sbjct: 26 TDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS 85
Query: 170 IVTLEIAKQGAIYHGLATLLSQPSP 194
IV L + ++ + + P
Sbjct: 86 IVRLYVMRRKPPAEKVMEIKLIKGP 110
Score = 56.7 bits (137), Expect = 2e-09
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 145 KDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 189
Score = 52.4 bits (126), Expect = 6e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
Q+GRL+ D +L V+ + +T A E L G IV L + ++ + +
Sbjct: 50 QDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG 109
Query: 346 P 346
P
Sbjct: 110 P 110
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 75.0 bits (185), Expect = 1e-16
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
D GI+I V + G A G ++ GD+LL+V+G +L G +A E L G V +
Sbjct: 30 KGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 88
Query: 175 IAKQ 178
+ ++
Sbjct: 89 VWRE 92
Score = 50.4 bits (121), Expect = 4e-08
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++ GD+LL+V+G +L G +A E L G V + + ++
Sbjct: 52 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 92
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 75.6 bits (186), Expect = 1e-16
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
++ GIY+ V G A G L+ GDQLL+ +G +L T+++A + + +T+
Sbjct: 37 VSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITI 95
Query: 174 EIAKQGAIYHGLATLLSQPS 193
++ + S PS
Sbjct: 96 LAQYNPHVHQLSSHSRSGPS 115
Score = 53.2 bits (128), Expect = 6e-09
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
L+ GDQLL+ +G +L T+++A + + +T+ ++ + S PS
Sbjct: 60 LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGPS 115
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 75.6 bits (186), Expect = 1e-16
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
GA + I + V G A G +Q G+++L ++G+SL G T A L +
Sbjct: 36 GADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQ 95
Query: 173 LEI 175
I
Sbjct: 96 AVI 98
Score = 51.7 bits (124), Expect = 2e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
Q G +Q G+++L ++G+SL G T A L + I
Sbjct: 57 QEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVI 98
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 77.1 bits (190), Expect = 2e-16
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
+ + I + KG A G L+ GD+LL +D L + E A + L + +V L+
Sbjct: 131 RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 190
Query: 175 IAKQ 178
I K
Sbjct: 191 IRKD 194
Score = 67.9 bits (166), Expect = 4e-13
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
I + A+ G LQ GD+++ ++G T E+A + L + + +
Sbjct: 37 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 92
Score = 55.2 bits (133), Expect = 6e-09
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+ G L+ GD+LL +D L + E A + L + +V L+I K
Sbjct: 150 RTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD 194
Score = 47.5 bits (113), Expect = 3e-06
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ G LQ GD+++ ++G T E+A + L + + +
Sbjct: 51 RCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 92
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 74.3 bits (183), Expect = 2e-16
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
+ I I + G AD G L GD +L V+G +L ++A L + + E+
Sbjct: 35 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 94
Query: 179 GAIYH 183
+H
Sbjct: 95 ALEHH 99
Score = 52.3 bits (126), Expect = 1e-08
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
+ G L GD +L V+G +L ++A L + + E+ +H
Sbjct: 50 RCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHH 99
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 73.5 bits (181), Expect = 3e-16
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
I++K + + G A +G L GD +LK++G ++ A + + ++ + L + +
Sbjct: 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDL 81
Query: 180 AIYH 183
+H
Sbjct: 82 EHHH 85
Score = 52.7 bits (127), Expect = 6e-09
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
++G L GD +LK++G ++ A + + ++ + L + + +H
Sbjct: 36 KDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEHHH 85
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 74.4 bits (183), Expect = 3e-16
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL----VRTG 168
G + + +V +GGAA+ +G + GD+++ ++G+ + T +A L + G
Sbjct: 37 GVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGG 96
Query: 169 PIVTLEIAKQ 178
+ L +A
Sbjct: 97 DWIDLVVAVC 106
Score = 51.3 bits (123), Expect = 4e-08
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL----VRTGPIVTLEIAKQ 330
++G + GD+++ ++G+ + T +A L + G + L +A
Sbjct: 58 RHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 73.2 bits (180), Expect = 3e-16
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
I++K + + A +G +Q GD +LK++G ++ A + R+ + + + +
Sbjct: 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 83
Score = 52.4 bits (126), Expect = 7e-09
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
++G +Q GD +LK++G ++ A + R+ + + + +
Sbjct: 38 RDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 83
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 74.0 bits (182), Expect = 4e-16
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
S E + I ++ G AD +L+ GD++L V+GQS++ + + +
Sbjct: 31 SLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD 90
Query: 167 TGPIVTLEIAKQ 178
G VTL I Q
Sbjct: 91 AGLSVTLRIIPQ 102
Score = 50.9 bits (122), Expect = 5e-08
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+ +L+ GD++L V+GQS++ + + + G VTL I Q
Sbjct: 58 RCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 73.2 bits (180), Expect = 5e-16
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
G G I +++ GG A+ +G L GD+L ++G SLVG+ + ++
Sbjct: 31 GWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTS 90
Query: 171 VTLEIAK 177
VTL I
Sbjct: 91 VTLSIVH 97
Score = 49.7 bits (119), Expect = 9e-08
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 329
++G L GD+L ++G SLVG+ + ++ VTL I
Sbjct: 52 RSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVH 97
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 77.1 bits (189), Expect = 8e-16
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Query: 62 PPGPERGDRPASAYLPNYP---GTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDR 118
P E G P A L PP ++ + + + +A +S +G +++
Sbjct: 43 PADGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENK 102
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
+ I I + KG AAD L GD +L V+G+ L T ++A + L +TG V LE+
Sbjct: 103 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM 162
Query: 179 GAIYHGLATLLSQPSP 194
+ S
Sbjct: 163 KEVSPYFKNSAGGTSV 178
Score = 49.4 bits (117), Expect = 2e-06
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
Q L GD +L V+G+ L T ++A + L +TG V LE+ + S
Sbjct: 118 QTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTS 177
Query: 346 P 346
Sbjct: 178 V 178
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 72.4 bits (178), Expect = 9e-16
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
I I V+KGG A+ G+LQ D++ V+G S+ + A + L ++G + I
Sbjct: 37 GETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIR 94
Query: 177 KQGAIYHGLATLL 189
++ T L
Sbjct: 95 RKKGGGWRRTTYL 107
Score = 50.8 bits (122), Expect = 4e-08
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLL 341
G+LQ D++ V+G S+ + A + L ++G + I ++ T L
Sbjct: 54 GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTTYL 107
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 73.0 bits (179), Expect = 1e-15
Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 81 GTPPNRLDSSMKSHSVRDMLRQEAKLSEM-------SEEGAG----QDRLGIYIKSVVKG 129
G+ + + K + + L+++ G G Q+ + I ++
Sbjct: 1 GSSGSSGSKNEKEQLSKA-KASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINK 59
Query: 130 GAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 177
GAA ++G LQ GD L+ V +++G T + + L + G ++ ++ +
Sbjct: 60 GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109
Score = 49.9 bits (119), Expect = 1e-07
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 329
+G LQ GD L+ V +++G T + + L + G ++ ++ +
Sbjct: 64 SDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 72.5 bits (178), Expect = 1e-15
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 70 RPASAYLPNYPGTPPNRLDSSMKSHSVRD--MLRQEAKLSEMSEEGAGQDRLGIYIKSVV 127
+ + G R ++ +R +L+++ + +S G + + I I +
Sbjct: 3 HHHHHHHHS-SGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIH 61
Query: 128 KGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
G AD G L GD +L V+G +L ++A L + + E+
Sbjct: 62 PGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
Score = 50.1 bits (120), Expect = 7e-08
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ G L GD +L V+G +L ++A L + + E+
Sbjct: 68 RCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 71.3 bits (175), Expect = 2e-15
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
D GI++ V G A LQ GD++++ +G S + I +A L V L
Sbjct: 39 RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 96
Query: 175 IAKQ 178
I ++
Sbjct: 97 IVRE 100
Score = 51.3 bits (123), Expect = 3e-08
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
LQ GD++++ +G S + I +A L V L I ++
Sbjct: 58 KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 72.2 bits (177), Expect = 2e-15
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIV 171
AG + +GI++ V++ A G L+ GDQ+L+V+ I +E+A +L + G V
Sbjct: 46 AGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 104
Query: 172 TLEIAKQGAIYH 183
T+ K+ +Y
Sbjct: 105 TILAQKKKDVYR 116
Score = 47.5 bits (113), Expect = 7e-07
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGAIYH 335
L+ GDQ+L+V+ I +E+A +L + G VT+ K+ +Y
Sbjct: 69 LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYR 116
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 71.7 bits (176), Expect = 2e-15
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
I I V+ GG AD G LQ D+++ V+G + + A + L ++G I +
Sbjct: 42 ENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIV 99
Query: 175 I 175
+
Sbjct: 100 V 100
Score = 50.1 bits (120), Expect = 8e-08
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+G LQ D+++ V+G + + A + L ++G I + +
Sbjct: 60 DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 70.9 bits (174), Expect = 3e-15
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
D GI++ V G A LQ GD++++ +G S + I +A L V L
Sbjct: 31 RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 88
Query: 175 IAKQ 178
I ++
Sbjct: 89 IVRE 92
Score = 51.6 bits (124), Expect = 1e-08
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
LQ GD++++ +G S + I +A L V L I ++
Sbjct: 50 KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 70.5 bits (173), Expect = 4e-15
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
GA + I ++ +GG+A G+L+ G +L+V+G +L G +AA +
Sbjct: 26 GANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD 85
Query: 173 LE 174
+
Sbjct: 86 RD 87
Score = 50.5 bits (121), Expect = 5e-08
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 326
G+L+ G +L+V+G +L G +AA + +
Sbjct: 47 NCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 69.3 bits (170), Expect = 9e-15
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
+ I + +++GGAAD +G + GD+L +V+G + E+ + L ++ +T +
Sbjct: 24 DEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFK 83
Query: 175 IAKQ 178
I
Sbjct: 84 IIPG 87
Score = 48.1 bits (115), Expect = 3e-07
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++G + GD+L +V+G + E+ + L ++ +T +I
Sbjct: 43 RSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPG 87
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 68.2 bits (167), Expect = 3e-14
Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 78 NYPGTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAG----QDRLGIYIKSVVKGGAAD 133
+ R+ S+ + + + ++ + + G + + I +VKGGAA+
Sbjct: 5 SSGPITDERVYESIGHYGGETV--KIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAE 62
Query: 134 ANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
+G L GD++L+++G + G + + L +T +
Sbjct: 63 KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107
Score = 48.2 bits (115), Expect = 4e-07
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++G L GD++L+++G + G + + L +T +
Sbjct: 63 KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 66.8 bits (163), Expect = 1e-13
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
S + GI+I +V GG A + G L D++L+V+G + G + ++ + ++
Sbjct: 53 SVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA 112
Query: 167 TGPIVTLEI 175
+ + +
Sbjct: 113 NSRNLIITV 121
Score = 46.0 bits (109), Expect = 3e-06
Identities = 7/42 (16%), Positives = 21/42 (50%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
G L D++L+V+G + G + ++ + ++ + + +
Sbjct: 80 STGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 65.8 bits (161), Expect = 2e-13
Identities = 10/57 (17%), Positives = 30/57 (52%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
+ ++ GG G L GD++L+++G ++ + ++ + + T +++L++
Sbjct: 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVI 93
Score = 47.7 bits (114), Expect = 3e-07
Identities = 8/43 (18%), Positives = 26/43 (60%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
+ G L GD++L+++G ++ + ++ + + T +++L++
Sbjct: 51 RQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVI 93
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 68.4 bits (167), Expect = 2e-13
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 18/171 (10%)
Query: 47 TQLHKGYSTQVLNRPPPGPERGDRPASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQEA-- 104
+ + Y + G + + LP + P + R
Sbjct: 27 YDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLK 86
Query: 105 --KLSEMSEEGAG-------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGI 155
+L + EG G + G++I ++KGG AD+ G LQ GD++++++G S+
Sbjct: 87 EVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSC 145
Query: 156 TQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYES 206
T E+ L+RT V++++ + GL + S P +T V + S
Sbjct: 146 THEEVIN-LIRTEKTVSIKV-----RHIGLIPVKSSPDEPLTWQYVDQFVS 190
Score = 41.5 bits (97), Expect = 3e-04
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMT 349
LQ GD++++++G S+ T E+ L+RT V++++ + GL + S P +T
Sbjct: 128 LQVGDEIVRINGYSISSCTHEEVIN-LIRTEKTVSIKV-----RHIGLIPVKSSPDEPLT 181
Query: 350 RAY 352
Y
Sbjct: 182 WQY 184
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 65.5 bits (160), Expect = 2e-13
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
G G+Y+K++ G D G L+ D+LL+V+ + +G + L
Sbjct: 28 GLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV 86
Query: 175 IAK 177
I++
Sbjct: 87 ISR 89
Score = 42.7 bits (101), Expect = 2e-05
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
G L+ D+LL+V+ + +G + L I++
Sbjct: 48 GGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 66.4 bits (162), Expect = 2e-13
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
+GIYI + A +GR++ GD++++++G + + A L
Sbjct: 48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLL 102
Score = 42.9 bits (101), Expect = 4e-05
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
++GR++ GD++++++G + + A L
Sbjct: 63 KDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLL 102
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 64.7 bits (158), Expect = 4e-13
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
+GIY+ V G A+ G L+ GDQ+L+V+ +SL +T +A + L + +V
Sbjct: 35 VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLS 88
Score = 42.7 bits (101), Expect = 2e-05
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+ L+ GDQ+L+V+ +SL +T +A + L + +V
Sbjct: 49 EKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLS 88
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 63.5 bits (155), Expect = 1e-12
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G + LGI++ V +G +A+ G L GD++ +V+G SL T A + L + +
Sbjct: 30 GGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVL-TSSSRLH 87
Query: 173 LEIAKQGAI 181
+ + + G+
Sbjct: 88 MMVRRMGSG 96
Score = 42.7 bits (101), Expect = 2e-05
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 289 RLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
L GD++ +V+G SL T A + L + + + + + G+
Sbjct: 53 GLCVGDKITEVNGLSLESTTMGSAVKVL-TSSSRLHMMVRRMGSG 96
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 63.5 bits (155), Expect = 1e-12
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
+ +LG YI+ V G A+ G L AGD+L++V+G+++ T ++ + V L
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL 81
Query: 175 IAKQ 178
+
Sbjct: 82 VVDP 85
Score = 42.7 bits (101), Expect = 2e-05
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+ L AGD+L++V+G+++ T ++ + V L +
Sbjct: 41 EKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 85
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 64.5 bits (157), Expect = 1e-12
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
I + A+ G LQ GD+++ ++G T E+A + L + +
Sbjct: 41 ETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVT 100
Query: 175 I 175
+
Sbjct: 101 L 101
Score = 44.5 bits (105), Expect = 9e-06
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ G LQ GD+++ ++G T E+A + L + + +
Sbjct: 60 RCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 101
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 63.2 bits (154), Expect = 1e-12
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEI 175
+IK + GG D+ + GD + ++G+++VG A+ L ++ + T+++
Sbjct: 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKL 86
Score = 44.3 bits (105), Expect = 5e-06
Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEI 327
+ GD + ++G+++VG A+ L ++ + T+++
Sbjct: 43 SVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKL 86
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 63.1 bits (154), Expect = 1e-12
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
+ ++ GG G L GD++ +++G S+ T E+ + L +T +I
Sbjct: 26 HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV 82
Score = 45.0 bits (107), Expect = 3e-06
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
+ G L GD++ +++G S+ T E+ + L +T +I
Sbjct: 40 RQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV 82
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 62.8 bits (153), Expect = 2e-12
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
L + + +V GG+A G+L GDQ+L+++ + ++ E+A + L +++ + +
Sbjct: 31 LPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87
Score = 45.8 bits (109), Expect = 2e-06
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
G+L GDQ+L+++ + ++ E+A + L +++ + +
Sbjct: 46 GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 69.2 bits (168), Expect = 3e-12
Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 31/242 (12%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
IY+ +++GGAA +GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 185 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPS 244
Query: 180 AIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPG 239
Y + + + + N ++ +G + A P
Sbjct: 245 NAYLSDS------------------YAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPT 286
Query: 240 SGMNHHPVVSRQASTPSLPQASPY------PAPAPAPADPERFYQNLSVYR-------NQ 286
S + PV +P+ + + + +
Sbjct: 287 SPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADL 346
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSP 346
+G L+ GDQ+L V+G L + E+AA L G VT+ + Y +
Sbjct: 347 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLRE 406
Query: 347 VM 348
+
Sbjct: 407 QL 408
Score = 68.8 bits (167), Expect = 4e-12
Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 1/195 (0%)
Query: 3 SHSVRDMLRQEA-KLSEMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNRP 61
S + D++ ++A + + + ++ N + T + ++ +
Sbjct: 214 SVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSS 273
Query: 62 PPGPERGDRPASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGI 121
G + Y + L R ++ G+D GI
Sbjct: 274 YLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGI 333
Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 181
+I ++ GG AD +G L+ GDQ+L V+G L + E+AA L G VT+ +
Sbjct: 334 FISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE 393
Query: 182 YHGLATLLSQPSPVM 196
Y + +
Sbjct: 394 YSRFEAKIHDLREQL 408
Score = 68.0 bits (165), Expect = 6e-12
Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 74/283 (26%)
Query: 70 RPASAYLPNYPGTPPNRLDS-SMKSHSVRDMLRQEAKLSEM----------------SEE 112
+ + A+LPN +PP +++ ++++ + E + E+ ++
Sbjct: 23 KHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDN 82
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
D I+I ++ GGAA +GRL+ D +L V+ + +T A E L G IV
Sbjct: 83 PHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVR 142
Query: 173 LEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSH 232
L + ++ ++ + + + L G G+
Sbjct: 143 LYVMRRKPPAEK------------------------VMEIKLIKGPKGLGFSIAGGVGNQ 178
Query: 233 HPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQA 292
H V++ + + LQ
Sbjct: 179 HIPGDNSI------YVTKIIEGGAAHKDGR---------------------------LQI 205
Query: 293 GDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
GD++L V+ L + E A L T +V L++AK Y
Sbjct: 206 GDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYL 248
Score = 44.5 bits (104), Expect = 1e-04
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
Q+GRL+ D +L V+ + +T A E L G IV L + ++ + +
Sbjct: 104 QDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG 163
Query: 346 P 346
P
Sbjct: 164 P 164
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 62.9 bits (153), Expect = 3e-12
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
+ GI+I V G + G L+ GDQ+++V+G + ++A L + +
Sbjct: 35 SGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTI 93
Query: 173 LEIAKQG 179
+A G
Sbjct: 94 SIVAAAG 100
Score = 40.9 bits (96), Expect = 1e-04
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
L+ GDQ+++V+G + ++A L + + +A G
Sbjct: 57 VGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAG 100
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 62.4 bits (152), Expect = 4e-12
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
Q + G+Y+ + G A G + A D L++V+G+++ + E+ E + ++G V
Sbjct: 27 TVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMF 85
Query: 174 EIA 176
+
Sbjct: 86 LLV 88
Score = 39.3 bits (92), Expect = 4e-04
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
+ A D L++V+G+++ + E+ E + ++G V +
Sbjct: 50 VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLV 88
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 62.0 bits (151), Expect = 5e-12
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
++ +V+ GGAAD G ++ GD++L+V+G ++ G T ++ + + + L +
Sbjct: 44 LQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Score = 40.8 bits (96), Expect = 1e-04
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
++ GD++L+V+G ++ G T ++ + + + L +
Sbjct: 61 VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 61.1 bits (149), Expect = 6e-12
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
+ + R G YI+SV G A +G L+A D+L++V+GQ++ G+ + + L
Sbjct: 23 SDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARL 81
Query: 174 EIAKQ 178
+
Sbjct: 82 LVVGP 86
Score = 39.6 bits (93), Expect = 3e-04
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
L+A D+L++V+GQ++ G+ + + L +
Sbjct: 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 86
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 60.4 bits (147), Expect = 1e-11
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
A + G +IK V KGG AD G L+ D +++V+G +++ EK + + +G VTL
Sbjct: 22 AIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTL 80
Query: 174 EIAKQ 178
+ +
Sbjct: 81 LVCGK 85
Score = 39.2 bits (92), Expect = 3e-04
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
L+ D +++V+G +++ EK + + +G VTL + +
Sbjct: 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGK 85
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 60.5 bits (147), Expect = 1e-11
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G LGI+I V+ A G LQ GDQ+L V+ I KA E L +T ++
Sbjct: 36 GKASQ-LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEIL-KTAREIS 92
Query: 173 LEI 175
+ +
Sbjct: 93 MRV 95
Score = 38.9 bits (91), Expect = 6e-04
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
LQ GDQ+L V+ I KA E L +T +++ +
Sbjct: 59 LQEGDQVLAVNDVDFQDIEHSKAVEIL-KTAREISMRV 95
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 60.0 bits (146), Expect = 2e-11
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D I + V + G A + L+ GD ++ ++G+S G+ +A + ++ + L
Sbjct: 21 GRDFHTPIMVTKVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL 79
Query: 174 EIAKQGAI 181
++ + ++
Sbjct: 80 QLDRITSL 87
Score = 45.3 bits (108), Expect = 2e-06
Identities = 8/48 (16%), Positives = 27/48 (56%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
++ L+ GD ++ ++G+S G+ +A + ++ + L++ + ++
Sbjct: 40 KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRITSL 87
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 60.0 bits (146), Expect = 2e-11
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D + I V G A L GD + ++G+S +T +A + +TL
Sbjct: 27 GRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTL 85
Query: 174 EIAKQGA 180
++ +
Sbjct: 86 SVSSGPS 92
Score = 43.0 bits (102), Expect = 2e-05
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
L GD + ++G+S +T +A + +TL ++ +
Sbjct: 48 AALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS 92
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 61.2 bits (148), Expect = 2e-11
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIV 171
+ GIY+ V +GG A+ G LQ GD++++V+G + +T ++A + L + + +V
Sbjct: 58 SEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 116
Query: 172 TLEIAKQGAIYHGLATLLSQP 192
L + +Q ++LS+
Sbjct: 117 RLLVTRQSLQKAVQQSMLSET 137
Score = 41.9 bits (98), Expect = 1e-04
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAIYHGLATLLSQP 344
LQ GD++++V+G + +T ++A + L + + +V L + +Q ++LS+
Sbjct: 82 LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLSET 137
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 59.2 bits (144), Expect = 2e-11
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
+ V++G AD G L+AGDQ+L V+ ++ + E + + + ++ + IA
Sbjct: 24 PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIA 79
Score = 39.5 bits (93), Expect = 2e-04
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
L+AGDQ+L V+ ++ + E + + + ++ + IA
Sbjct: 41 LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIA 79
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 59.7 bits (145), Expect = 3e-11
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G + + + + GG A + +++ GD+L+ ++G L G QE A + + I+ L
Sbjct: 30 GLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQE-ALILIKGSFRILKL 88
Query: 174 EIAKQGA 180
+ ++ +
Sbjct: 89 IVRRRNS 95
Score = 41.6 bits (98), Expect = 6e-05
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
+ +++ GD+L+ ++G L G QE A + + I+ L + ++ +
Sbjct: 50 LSQKMRTGDELVNINGTPLYGSRQE-ALILIKGSFRILKLIVRRRNS 95
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 59.8 bits (145), Expect = 3e-11
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 113 GAGQDRLGIYIKSVVKGGAAD-ANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
G ++ + + V G AD RL GDQ++ ++G+ + T ++ ++ +
Sbjct: 37 GGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 96
Query: 172 TLEI 175
+ E+
Sbjct: 97 SGEL 100
Score = 42.5 bits (100), Expect = 3e-05
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
RL GDQ++ ++G+ + T ++ ++ + + E+
Sbjct: 60 VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 100
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 59.3 bits (144), Expect = 3e-11
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
+ + + G +I+SV A+A+G L+A D++++V+G + G + G L
Sbjct: 28 SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86
Query: 174 EIAKQ 178
+ +
Sbjct: 87 LVVDR 91
Score = 38.9 bits (91), Expect = 6e-04
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
L+A D++++V+G + G + G L + +
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 60.2 bits (146), Expect = 4e-11
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G + LGIYI V G A+ +G L+ GDQ+L+V+G+S + I ++A L + ++
Sbjct: 41 GAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILT 99
Score = 39.4 bits (92), Expect = 5e-04
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+ L+ GDQ+L+V+G+S + I ++A L + ++
Sbjct: 60 EGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILT 99
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 59.9 bits (145), Expect = 4e-11
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 113 GAGQDRLGIYIKSVVKGGAAD-ANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
G ++ + + V G AD RL GDQ++ ++G+ + T ++ ++ +
Sbjct: 35 GGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 94
Query: 172 TLEI 175
+ E+
Sbjct: 95 SGEL 98
Score = 42.6 bits (100), Expect = 4e-05
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
RL GDQ++ ++G+ + T ++ ++ + + E+
Sbjct: 58 VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 98
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 58.8 bits (143), Expect = 4e-11
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D + + I S+ GG A ++ GD +L +DG + G+T +A + + +
Sbjct: 22 GKDFNMPLTISSLKDGGKAA-QANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNM 80
Query: 174 EIAKQGAI 181
+ ++ +
Sbjct: 81 TLQRESDL 88
Score = 43.8 bits (104), Expect = 7e-06
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
++ GD +L +DG + G+T +A + + + + ++ +
Sbjct: 42 QANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRESDL 88
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 64.2 bits (155), Expect = 5e-11
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
+ G I S+++GG A+ G ++ G ++++++GQS+V EK + L +
Sbjct: 306 LKYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVG 364
Query: 170 IVTLEIAKQGAIYHGLATLLSQPSPV 195
+ ++ A++ L Q +P+
Sbjct: 365 EIHMKTMP-AAMFR---LLTGQETPL 386
Score = 59.2 bits (142), Expect = 2e-09
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 3/149 (2%)
Query: 31 HRNQQEMHNGYVDKSPTQLHKGYSTQVLNRPPPGPERGDRPASAYLPNYPGTPPNRLDSS 90
H + E Y + + + S + + + S
Sbjct: 141 HVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFS 200
Query: 91 MKSHSVRDMLRQEAKLS---EMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKV 147
+ L + + E G G + + +++ GG A +G+L GDQ++ +
Sbjct: 201 NSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI 260
Query: 148 DGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
+G SLVG+ + +++
Sbjct: 261 NGTSLVGLPLATCQGIIKGLKNQTQVKLN 289
Score = 48.8 bits (115), Expect = 4e-06
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
+ G ++ G ++++++GQS+V EK + L + + ++ A++ L Q +
Sbjct: 329 ERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP-AAMFR---LLTGQET 384
Query: 346 PV 347
P+
Sbjct: 385 PL 386
Score = 42.3 bits (98), Expect = 4e-04
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
++G+L GDQ++ ++G SLVG+ + +++
Sbjct: 247 RSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 289
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 58.2 bits (141), Expect = 6e-11
Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 177
GI++ SV G A+ + LQ D+++ ++ ++ E + + + +++ +
Sbjct: 29 GIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87
Query: 178 QG 179
G
Sbjct: 88 YG 89
Score = 41.3 bits (97), Expect = 7e-05
Identities = 5/46 (10%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQG 331
+LQ D+++ ++ ++ E + + + +++ + G
Sbjct: 44 SQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 58.1 bits (141), Expect = 6e-11
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
I S+VK +A NG L + +++GQ+++G+ + A+ L +G +VT+ I
Sbjct: 27 ITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
Score = 43.4 bits (103), Expect = 9e-06
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+NG L + +++GQ+++G+ + A+ L +G +VT+ I
Sbjct: 38 RNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 58.5 bits (142), Expect = 7e-11
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D + + I S+ GG A ++ GD +L +DG S G+T +A + + +
Sbjct: 24 GKDFNMPLTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM 82
Query: 174 EIAKQGAIYHGLATLLSQPSP 194
+ + A + S PS
Sbjct: 83 TLQRASAAAKS-EPVSSGPSS 102
Score = 44.3 bits (105), Expect = 7e-06
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSP 346
++ GD +L +DG S G+T +A + + + + + A + S PS
Sbjct: 44 QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKS-EPVSSGPSS 102
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 61.7 bits (149), Expect = 7e-11
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 7/159 (4%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
+ + + G +I+SV A+A+G L+A D++++V+G + G + G L
Sbjct: 28 SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86
Query: 174 EIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHH 233
+ + + + + + + + + S
Sbjct: 87 LVVDRETDEFFKKCRVIPSQEHLNG------PLPVPFTNGEIQKENSREALAEAALESPR 140
Query: 234 PAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPAD 272
PA + + ++ Q S P +P + P
Sbjct: 141 PALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPIL 179
Score = 34.7 bits (79), Expect = 0.056
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
L+A D++++V+G + G + G L + +
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 57.7 bits (140), Expect = 8e-11
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D + + I + GG A G + GD +L +DG++ +T +A + G ++L
Sbjct: 22 GKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSL 80
Query: 174 EI 175
+
Sbjct: 81 GL 82
Score = 40.8 bits (96), Expect = 9e-05
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ GD +L +DG++ +T +A + G ++L +
Sbjct: 45 VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGL 82
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 57.6 bits (140), Expect = 8e-11
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D + + I + G A + L GD ++ +DG + +T +A + ++L
Sbjct: 20 GKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSL 78
Query: 174 EIAKQG 179
+ K
Sbjct: 79 TLQKSK 84
Score = 43.0 bits (102), Expect = 1e-05
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
+L GD ++ +DG + +T +A + ++L + K
Sbjct: 41 SQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 59.8 bits (145), Expect = 1e-10
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEI 175
GI+++ V A G L+ GDQ+L+++G++ G + +KA + L + G +T+ I
Sbjct: 28 GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83
Score = 52.9 bits (127), Expect = 2e-08
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 96 VRDMLRQEAKLSEMSEEGA-GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVG 154
+RD + G G I S+VK +A NG L + +++GQ+++G
Sbjct: 83 IRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIG 141
Query: 155 ITQEKAAEYLVRTGPIVTLEI 175
+ + A+ L +G +VT+ I
Sbjct: 142 LKDSQIADILSTSGTVVTITI 162
Score = 42.1 bits (99), Expect = 1e-04
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEI 327
L+ GDQ+L+++G++ G + +KA + L + G +T+ I
Sbjct: 45 LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83
Score = 40.2 bits (94), Expect = 5e-04
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
L + +++GQ+++G+ + A+ L +G +VT+ I
Sbjct: 125 LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 57.0 bits (138), Expect = 2e-10
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
EE R G ++ V G A G +QAGD+L+ V G+S+ G+ E+ + G
Sbjct: 22 EEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSC 80
Query: 171 VTLEIAKQ 178
V+L +
Sbjct: 81 VSLTVVDP 88
Score = 38.9 bits (91), Expect = 5e-04
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+QAGD+L+ V G+S+ G+ E+ + G V+L +
Sbjct: 48 MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDP 88
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 56.9 bits (138), Expect = 2e-10
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
AG ++ G IK + G A+A G L+ D ++ V+G+S+ + + E + + G TL
Sbjct: 24 AGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL 82
Query: 174 EIAKQGA 180
+ +
Sbjct: 83 LVLDKEL 89
Score = 36.9 bits (86), Expect = 0.002
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
L+ D ++ V+G+S+ + + E + + G TL + +
Sbjct: 47 LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEL 89
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 57.6 bits (139), Expect = 3e-10
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
+ + + G +I+SV A+A+G L+A D++++V+G + G + G L
Sbjct: 28 SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86
Query: 174 EIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKER 216
+ + + PS G + + +Q+ R
Sbjct: 87 LVVDRETDEFFKKCRVI-PSQEHLNGPLPVPFTNGEIQKENSR 128
Score = 36.8 bits (85), Expect = 0.005
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
L+A D++++V+G + G + G L + +
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 56.2 bits (136), Expect = 3e-10
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D I + V + G A+A L+ GD ++ ++GQS + +A + ++ + L
Sbjct: 25 GRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRL 83
Query: 174 EIAKQGA 180
++ +
Sbjct: 84 QLDRSSG 90
Score = 41.5 bits (98), Expect = 5e-05
Identities = 8/46 (17%), Positives = 22/46 (47%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
L+ GD ++ ++GQS + +A + ++ + L++ +
Sbjct: 45 AADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG 90
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 56.2 bits (136), Expect = 4e-10
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G D + I + G A L GD +L +DG +T A + + + L
Sbjct: 24 GIDFNQPLVITRITPGSKAA-AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCL 82
Query: 174 EIAKQGAIYHGLATLLSQPSP 194
+I + + S PS
Sbjct: 83 KIDRAETRLWS-PQVSSGPSS 102
Score = 42.3 bits (100), Expect = 3e-05
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSP 346
L GD +L +DG +T A + + + L+I + + S PS
Sbjct: 44 AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWS-PQVSSGPSS 102
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 55.4 bits (134), Expect = 6e-10
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D + I V G A L GD + +DG++ +T +A + +TL
Sbjct: 22 GKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTL 80
Query: 174 EIAKQ 178
+A+
Sbjct: 81 TVARS 85
Score = 42.7 bits (101), Expect = 2e-05
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
L GD + +DG++ +T +A + +TL +A+
Sbjct: 41 ALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARS 85
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 55.1 bits (133), Expect = 7e-10
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
+ I ++ GG G L GD + +V+GQ VG E L V L+I
Sbjct: 30 ELVIARILHGGMVAQQGLLHVGDIIKEVNGQP-VGSDPRALQELLRNASGSVILKIL 85
Score = 38.2 bits (89), Expect = 7e-04
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
Q G L GD + +V+GQ VG E L V L+I
Sbjct: 44 QQGLLHVGDIIKEVNGQP-VGSDPRALQELLRNASGSVILKIL 85
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 55.0 bits (133), Expect = 9e-10
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
+ ++SV GGAA G ++ GD+++KV+G + + + + L+++G V L +
Sbjct: 30 IVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVK-LIKSGAYVALTLLGSS 87
Query: 180 AI 181
+
Sbjct: 88 SG 89
Score = 36.5 bits (85), Expect = 0.003
Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
++ GD+++KV+G + + + + L+++G V L + +
Sbjct: 47 VKEGDRIIKVNGTMVTNSSHLEVVK-LIKSGAYVALTLLGSSSG 89
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 55.1 bits (133), Expect = 1e-09
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
+ + ++ V + A G L GD + V+G ++ GI + + + +G ++
Sbjct: 30 REEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVL 88
Query: 172 TLEI 175
LE
Sbjct: 89 RLET 92
Score = 38.5 bits (90), Expect = 6e-04
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
L GD + V+G ++ GI + + + +G ++ LE
Sbjct: 55 LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLET 92
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 55.1 bits (133), Expect = 1e-09
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
AG ++ G IK + G A+A G L+ D ++ V+G+S+ + + E + + G TL
Sbjct: 25 AGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL 83
Query: 174 EIA 176
+
Sbjct: 84 LVL 86
Score = 35.4 bits (82), Expect = 0.009
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
L+ D ++ V+G+S+ + + E + + G TL +
Sbjct: 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVL 86
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 55.3 bits (133), Expect = 2e-09
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
I++K V +GG A G L GD+++KV+G+S++G T + + + + L +
Sbjct: 62 TIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
Score = 39.5 bits (92), Expect = 6e-04
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
L GD+++KV+G+S++G T + + + + L +
Sbjct: 79 LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 54.7 bits (132), Expect = 2e-09
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
+ +++V GG A+ G LQ D +L+++ + + + A + + L + +
Sbjct: 37 PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95
Query: 180 A 180
Sbjct: 96 G 96
Score = 37.4 bits (87), Expect = 0.002
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
LQ D +L+++ + + + A + + L + +
Sbjct: 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSG 96
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 53.9 bits (130), Expect = 2e-09
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
+ +++V GG A+ G LQ D +L+++ + + + A + + L +
Sbjct: 25 PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW 80
Score = 36.6 bits (85), Expect = 0.003
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
LQ D +L+++ + + + A + + L +
Sbjct: 42 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW 80
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 53.2 bits (128), Expect = 4e-09
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
I S+++GG A+ G ++ G ++++++GQS+V EK L + ++
Sbjct: 34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
Score = 38.2 bits (89), Expect = 8e-04
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ G ++ G ++++++GQS+V EK L + ++
Sbjct: 46 RGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 55.3 bits (132), Expect = 6e-09
Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 5/128 (3%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
D GI++ V G A LQ GD++++ +G S + I +A L V L
Sbjct: 20 RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 77
Query: 175 IAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGS--- 231
I ++ + + G + V + GV
Sbjct: 78 IVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASYYGVSYYRIT 137
Query: 232 HHPAPGPG 239
+ G
Sbjct: 138 YGETGGNS 145
Score = 38.0 bits (87), Expect = 0.004
Identities = 12/59 (20%), Positives = 22/59 (37%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSP 346
LQ GD++++ +G S + I +A L V L I ++ +
Sbjct: 39 KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKD 97
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 52.9 bits (127), Expect = 9e-09
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
+D G I+ + +G A+ G L GD++L+++G + + E + ++G VTL
Sbjct: 33 IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 91
Query: 174 EI 175
+
Sbjct: 92 LV 93
Score = 35.9 bits (83), Expect = 0.008
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
L GD++L+++G + + E + ++G VTL +
Sbjct: 56 LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 93
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 52.4 bits (126), Expect = 9e-09
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
+D G I+ + +G A+ G L GD++L+++G + + E + ++G VTL
Sbjct: 21 IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 79
Query: 174 EI 175
+
Sbjct: 80 LV 81
Score = 35.5 bits (82), Expect = 0.008
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
L GD++L+++G + + E + ++G VTL +
Sbjct: 44 LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 81
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 52.1 bits (125), Expect = 1e-08
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
+ I + + A G LQAGD L ++G S G T ++ + + +G ++T+E
Sbjct: 47 EMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 37.1 bits (86), Expect = 0.003
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
LQAGD L ++G S G T ++ + + +G ++T+E
Sbjct: 66 LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 51.6 bits (124), Expect = 2e-08
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
+ + SV G A G L+AGD + ++G+S++G+ E L+++G ++L
Sbjct: 33 TVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRT 89
Score = 39.7 bits (93), Expect = 3e-04
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
Q L+AGD + ++G+S++G+ E L+++G ++L
Sbjct: 48 QEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRT 89
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 50.7 bits (122), Expect = 3e-08
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVT 172
G +K +V L+ GD +++V+ +++ +T + + L G VT
Sbjct: 23 SPGGGGQRVKQIV-DSPRS--RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT 79
Query: 173 LEIAKQGAI 181
L + +Q +
Sbjct: 80 LLVQRQTRL 88
Score = 41.5 bits (98), Expect = 5e-05
Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGAI 333
++ L+ GD +++V+ +++ +T + + L G VTL + +Q +
Sbjct: 39 RSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTRL 88
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 50.6 bits (121), Expect = 5e-08
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
Y++SV +GG A G L+ GD L++V+GQ++V + + + + G +
Sbjct: 38 TPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTL 96
Query: 172 TLEI 175
+++
Sbjct: 97 MVKV 100
Score = 35.2 bits (81), Expect = 0.011
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
L+ GD L++V+GQ++V + + + + G + +++
Sbjct: 63 LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 50.2 bits (120), Expect = 7e-08
Identities = 7/57 (12%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEI 175
+ + + +A G + GD ++ + +T + + L G + +++
Sbjct: 45 PVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100
Score = 33.2 bits (76), Expect = 0.055
Identities = 5/39 (12%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEI 327
+ GD ++ + +T + + L G + +++
Sbjct: 62 AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 50.0 bits (119), Expect = 1e-07
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 108 EMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT 167
Y++SV +GG A G L+ GD L++V+GQ++V + + + +
Sbjct: 54 IEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG 112
Query: 168 GPIVTLEI 175
G + +++
Sbjct: 113 GNTLMVKV 120
Score = 35.7 bits (82), Expect = 0.013
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
L+ GD L++V+GQ++V + + + + G + +++
Sbjct: 83 LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 120
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 49.5 bits (118), Expect = 1e-07
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIA 176
G +K ++ LQ GD + ++ Q++ +T + E L G V L I
Sbjct: 34 TGQKVKMILDSQWC---QGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLIL 90
Query: 177 KQGAIYHGLATLLSQPSPVMTR 198
+ G + S +T+
Sbjct: 91 RGGPPSPTKTAKMGSGSGQITK 112
Score = 45.6 bits (108), Expect = 3e-06
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGAIYHGLAT 339
+ LQ GD + ++ Q++ +T + E L G V L I + G
Sbjct: 42 LDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTA 101
Query: 340 LLSQPSPVMTR 350
+ S +T+
Sbjct: 102 KMGSGSGQITK 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 1e-07
Identities = 35/239 (14%), Positives = 84/239 (35%), Gaps = 55/239 (23%)
Query: 453 DVVETNKDKLTLEEREKALKELDEIINSIKITRNIREFGSLDLSTSDRNKDFKKSRFLSS 512
DV + K L+ EE + + D ++ +R F +L + ++ + +F+
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDA------VSGTLRLFWTLL----SKQEEMVQ-KFVEE 85
Query: 513 MLELNFSEMKIDDKDDNKFNNNNMDP-DNRELNNNISNNESEEPAEFTVGKVNLGLNSIL 571
+L +N+ + + P + + + F V+
Sbjct: 86 VLRINYKFLM------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS------- 132
Query: 572 RQSTVVKLDLRMFKKDPRQRRLAQQQQEK------ML-SNKTS---QVPEKLSFKEKM-- 619
R +KL ++ L + + K +L S KT V + KM
Sbjct: 133 RLQPYLKL----------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 620 KMFAMETGEDGTPRDKVKISRAQRDIDNLGTPTSTNINTSNESASNV--SVNNLNSKFK 676
K+F + +P +++ + L N + ++ +SN+ ++++ ++ +
Sbjct: 183 KIFWLNLKNCNSPETVLEM------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Score = 34.1 bits (77), Expect = 0.21
Identities = 29/245 (11%), Positives = 66/245 (26%), Gaps = 66/245 (26%)
Query: 270 PADPERFYQNLSVYRNQNGRLQAGD-----QLLKVDGQSLVGITQEKAAEYLVRTGPIVT 324
PA+ + + LSV+ LL + ++ L + +
Sbjct: 368 PAEYRKMFDRLSVFPP--------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-- 417
Query: 325 LEIAKQGAIY-HGLATLLSQPSPVMTRAYKNM----NKFKCYKTPKDNELCLCED--IFQ 377
+ K+ I + L ++++ N K + D+ + D +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYS 475
Query: 378 Q---H-----------------------QAKLIDCDSEDAKAVSSYTNNTESEQVKENVD 411
H + K+ + A S NT
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST--AWNASGSILNTLQ-------Q 526
Query: 412 VDTASSSMSECCCNHSDNTTSTQS-SDNNSEPKQEVHQSTSVDVVE---TNKDKLTLEER 467
+ + + N + D + ++ + S D++ +D+ EE
Sbjct: 527 LKFYKPYICD---NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 468 EKALK 472
K ++
Sbjct: 584 HKQVQ 588
Score = 32.9 bits (74), Expect = 0.40
Identities = 31/212 (14%), Positives = 62/212 (29%), Gaps = 60/212 (28%)
Query: 1 MKSHSVRDMLRQEAKLSEMSEEEIHRNQ-EIH----------RNQQEMHNGYVDKSPTQL 49
+ V ++ + K S + E++ + I N+ +H VD +
Sbjct: 399 VIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH--YNI 455
Query: 50 HKGYSTQVLNRPPPGPERGDRPASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQ------- 102
K + + + P Y ++ G + L + + + R
Sbjct: 456 PKTFDS---DDLIPPYLDQ------YFYSHIG---HHLKNIEHPERM-TLFRMVFLDFRF 502
Query: 103 -EAKL--SEMSEEGAG------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLV 153
E K+ + +G Q L Y + ++L+ L
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKY--------ERLVNAILDFL- 552
Query: 154 GITQEKAAEYLVRTGPIVTLEIA---KQGAIY 182
K E L+ + L IA + AI+
Sbjct: 553 ----PKIEENLICSKYTDLLRIALMAEDEAIF 580
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 52.9 bits (126), Expect = 2e-07
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G + +GI++ V++ A G L+ GDQ+L+V+ I +E+A +L+ +
Sbjct: 27 GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 84
Score = 37.1 bits (85), Expect = 0.016
Identities = 21/172 (12%), Positives = 47/172 (27%), Gaps = 19/172 (11%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMT 349
L+ GDQ+L+V+ I +E+A +L+ + I Q + S
Sbjct: 49 LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFY 108
Query: 350 RAYKNMNKFKCYKTPKDNELCL-CEDIFQQH-----------QAKLIDCDSEDAKA--VS 395
+ Y+ L ++F+ A I + ++ + +
Sbjct: 109 -----IRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIP 163
Query: 396 SYTNNTESEQVKENVDVDTASSSMSECCCNHSDNTTSTQSSDNNSEPKQEVH 447
+ + V+ + ++ Q V
Sbjct: 164 NKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQ 215
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 48.5 bits (116), Expect = 2e-07
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEI 175
G +K ++ L GD +++++ Q++ ++ + + L G +L I
Sbjct: 31 PTGQRVKQIL---DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87
Query: 176 AKQGA 180
+
Sbjct: 88 HRGSG 92
Score = 42.8 bits (101), Expect = 2e-05
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGA 332
+ L GD +++++ Q++ ++ + + L G +L I +
Sbjct: 40 LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 47.5 bits (113), Expect = 7e-07
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEI 175
+ + + +A G + GD ++ + G +T + + L G V +++
Sbjct: 37 PVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV 92
Score = 32.5 bits (74), Expect = 0.11
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEI 327
+ GD ++ + G +T + + L G V +++
Sbjct: 54 AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV 92
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 49.9 bits (118), Expect = 2e-06
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
G + +GI++ V++ A G L+ GDQ+L+V+ I +E+A +L+ +
Sbjct: 19 GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVT 77
Query: 175 I 175
I
Sbjct: 78 I 78
Score = 34.9 bits (79), Expect = 0.081
Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 19/172 (11%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMT 349
L+ GDQ+L+V+ I +E+A +L+ + I Q +
Sbjct: 41 LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV-----YRRIVESDV 95
Query: 350 RAYKNMNKFKCYKTPKDNELCL-CEDIFQQH-----------QAKLIDCDSEDAKA--VS 395
+ Y+ L ++F+ A I + ++ + +
Sbjct: 96 GDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIP 155
Query: 396 SYTNNTESEQVKENVDVDTASSSMSECCCNHSDNTTSTQSSDNNSEPKQEVH 447
+ + V+ + ++ Q V
Sbjct: 156 NKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQ 207
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 45.4 bits (107), Expect = 4e-06
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
+Y+ SV + G A G L+AGD++L+++ ++ + ++L + +
Sbjct: 38 VEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLL 96
Query: 173 L 173
+
Sbjct: 97 V 97
Score = 28.5 bits (63), Expect = 3.4
Identities = 6/36 (16%), Positives = 20/36 (55%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
L+AGD++L+++ ++ + ++L + + +
Sbjct: 62 LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLV 97
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 43.8 bits (103), Expect = 8e-06
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
+Y+ SV + G A G L+AGD++L+++ ++ + ++L + P +
Sbjct: 29 VEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFL--SQPSLG 85
Query: 173 LEI 175
L +
Sbjct: 86 LLV 88
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 42.2 bits (99), Expect = 6e-05
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G+ I SVV G A L G + ++G +T AA + G ++ + +
Sbjct: 26 GVQIDSVVPGSPAS--KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGT 83
Score = 28.3 bits (63), Expect = 4.3
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
L G + ++G +T AA + G ++ + +
Sbjct: 40 KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGT 83
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 40.7 bits (96), Expect = 1e-04
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
S + GIY++ V + G +Q GD ++KV+G+ + + V T
Sbjct: 25 ASNPDFPEVSSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRP---LVDSSELQEAVLTE 80
Query: 169 PIVTLEIAKQG 179
+ LE+ +
Sbjct: 81 SPLLLEVRRGN 91
Score = 27.3 bits (61), Expect = 7.2
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
+Q GD ++KV+G+ + + V T + LE+ +
Sbjct: 53 IQDGDIIVKVNGRP---LVDSSELQEAVLTESPLLLEVRRGN 91
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 40.4 bits (95), Expect = 1e-04
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G+Y+ SV+ A RL+AGD++ +DGQ + Q + + G V + +
Sbjct: 6 GVYVMSVLPNMPAAG--RLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDR 63
Query: 180 AIYHGLATLLSQPS 193
+ L P
Sbjct: 64 KQHEAELVLKPFPH 77
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 40.8 bits (96), Expect = 1e-04
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
+ E + G+ I V+ G A G L+ GD +L + Q + + VRT
Sbjct: 25 LREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQM---VQNAEDVYEAVRTQ 80
Query: 169 PIVTLEIAKQG 179
+ ++I +
Sbjct: 81 SQLAVQIRRGR 91
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 39.2 bits (92), Expect = 3e-04
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
GIY SVV+ A +++ GD+++ DG++ + + G VTL+I ++
Sbjct: 2 GIYASSVVENMPAKG--KIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREE 59
Query: 180 AIYHGLATLLSQPS 193
TL P
Sbjct: 60 KEKRVTLTLKQFPD 73
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 42.2 bits (100), Expect = 3e-04
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G+ I V+ G A G L+ GD +L + Q + + VRT + ++I +
Sbjct: 257 GVLIHKVILGSPAHRAG-LRPGDVILAIGEQM---VQNAEDVYEAVRTQSQLAVQIRRGR 312
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 41.9 bits (99), Expect = 5e-04
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 116 QDRLGIYIK--SVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI--- 170
G + + GG A+ G +AGD ++ VDG ++ G++ ++ L++ G
Sbjct: 94 DGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSD-LLQ-GEADSQ 150
Query: 171 VTLEIAKQGA 180
V + + GA
Sbjct: 151 VEVVLHAPGA 160
Score = 39.2 bits (92), Expect = 0.003
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI---VTLEIAKQGA 332
+AGD ++ VDG ++ G++ ++ L++ G V + + GA
Sbjct: 117 ARAGDVIVTVDGTAVKGMSLYDVSD-LLQ-GEADSQVEVVLHAPGA 160
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 38.4 bits (90), Expect = 8e-04
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G+Y+ SV A L AGD + ++DG + + + + G V +
Sbjct: 8 GVYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGD 65
Query: 180 AIYHGLATLLSQPSP 194
L +
Sbjct: 66 KNEQADIKLTAIDKK 80
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 39.1 bits (92), Expect = 0.001
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G+ ++SV A+ + L+ D + KVD + + T ++A Y G + + + G
Sbjct: 58 GVIVRSVQSNMPANGH--LEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNG 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 0.001
Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 72/219 (32%)
Query: 5 SVRDMLRQEAKLSEMSEEEI-HRNQEIHRNQQ---EMHNGY----VDKSPTQLHKGYSTQ 56
S+ ++ +++ ++ + N + +Q + NG V P L+ G +
Sbjct: 340 SISNLTQEQV------QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-GLNLT 392
Query: 57 V--LNRPP-------PGPERGDRPASAYLPNYPGTPPNRLDSSMKSHS-----VRDMLRQ 102
+ P P ER + ++ +LP +P HS D++ +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLP--VASP---------FHSHLLVPASDLINK 441
Query: 103 EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVG-ITQ---- 157
+ L + + +D + I + G +D L+ + + +V I +
Sbjct: 442 D--LVKNNVSFNAKD-IQIPVYDTFDG--SD----LRVLSGSI---SERIVDCIIRLPVK 489
Query: 158 -EKA----AEYLVRTGPIVTLEIAKQGAIYHGLATLLSQ 191
E A +++ GP G GL L +
Sbjct: 490 WETTTQFKATHILDFGP---------GGA-SGLGVLTHR 518
Score = 36.2 bits (83), Expect = 0.050
Identities = 47/327 (14%), Positives = 82/327 (25%), Gaps = 122/327 (37%)
Query: 230 GSHHPAPGPGSGM---NHHPVVSR---QA----------STPSLPQASP-----YPAPAP 268
GS G GM +A S + +P +
Sbjct: 1625 GSQEQ----GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 269 APADPERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG---P-IVT 324
E Y + +G+L+ +++ K + T L T P +
Sbjct: 1681 GKRIREN-YSAMIFETIVDGKLKT-EKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 325 LEIA------KQGAIY-------HGL----ATLLSQPSPVMT----------RAYKNMNK 357
+E A +G I H L A L+ + VM+ R
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAA--LASLADVMSIESLVEVVFYRG-----M 1791
Query: 358 FKCYKTPKDNELCLCEDIFQQHQAKL-IDCDSEDAKAVSSYTNNTESEQVKENVDVDTAS 416
P+D + + ++ E + V V+
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV-----------------VERVG 1834
Query: 417 SSMSECCC--NHSDNTTSTQSSDNNSEPKQEVHQSTSVDVV---ETNKDKLTLEEREKAL 471
N+ N E +Q V + +AL
Sbjct: 1835 KRTGWLVEIVNY------------NVENQQ---------YVAAGDL-----------RAL 1862
Query: 472 KELDEIINSIKITRNIREFGSLDLSTS 498
+ ++N IK+ + I + L S S
Sbjct: 1863 DTVTNVLNFIKL-QKI-DIIELQKSLS 1887
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 40.7 bits (96), Expect = 0.001
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G YI V+ A+A G L+ D ++ ++GQS + +++ + + + +
Sbjct: 255 GAYIIEVIPDTPAEAGG-LKENDVIISINGQS---VVSANDVSDVIKRESTLNMVVRRGN 310
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 39.2 bits (92), Expect = 0.003
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
D LG I VV GGAA G + G + KVD + + AA G V L
Sbjct: 240 DTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTF 297
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 39.0 bits (91), Expect = 0.004
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT 167
I VV G A+ G LQ G ++ ++G + + + + R
Sbjct: 92 ALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESELLQGSTRQ 137
Score = 29.8 bits (67), Expect = 3.0
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRT 319
LQ G ++ ++G + + + + R
Sbjct: 108 LQRGHWIMMMNGDYITKKVESELLQGSTRQ 137
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 35.9 bits (83), Expect = 0.004
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 182
+++V AA G LQAGD+++ VDGQ + G + LEI +QG+
Sbjct: 8 LENVQPNSAASXAG-LQAGDRIVXVDGQP-LTQWVTFVMLVRDNPGXSLALEIERQGSPL 65
Query: 183 HGLATLLSQPSPVMTRGQV 201
S P G V
Sbjct: 66 SLTLIPESXPGNGXAIGFV 84
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 38.3 bits (90), Expect = 0.005
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
GI + V G A G +Q D ++ VD + + + +R G ++ + + +
Sbjct: 245 GIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDD 303
Query: 180 AIYHGLATLLSQPS 193
T+ P+
Sbjct: 304 KQLTLQVTIQEYPA 317
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 36.1 bits (83), Expect = 0.007
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 95 SVRDMLRQE----AKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQ 150
++R+ + + + +S+ LG + ++ G LQ GD + ++G
Sbjct: 9 AIREAIARNPQEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGL 67
Query: 151 SLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
L + ++L + + G
Sbjct: 68 DLTDPNVMNTLFQSMNEMTEMSLTVERDG 96
Score = 28.4 bits (63), Expect = 3.2
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
LQ GD + ++G L + ++L + + G
Sbjct: 55 LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDG 96
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 38.5 bits (88), Expect = 0.008
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 116 QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
G+ + +V +A G L AGD+++ +D + ++ E G VT+
Sbjct: 493 ASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRILERY-IPGDTVTIHA 550
Query: 176 AKQGAIYHGLATLLSQPSP 194
++ + T
Sbjct: 551 FRRDELMTLELTWQEPAKS 569
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 34.4 bits (79), Expect = 0.013
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEK 159
+ Q +LS++ + G + ++ G LQ GD + ++G L
Sbjct: 3 IFQYVRLSQVKRDDKVL---GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMN 58
Query: 160 AAEYLVRTGPIVTLEIAKQG 179
+ ++L + + G
Sbjct: 59 TLFQSMNEMTEMSLTVERDG 78
Score = 28.3 bits (63), Expect = 1.9
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
LQ GD + ++G L + ++L + + G
Sbjct: 37 LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDG 78
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.017
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 465 EEREKALKELDEIINSIKITRNIREFGSLDLSTSDRNKDFKKSRFLSSMLELNFSEMKID 524
EE+ K L+ELD S + + RE DL +++ + + S +E N +I
Sbjct: 92 EEQRKRLQELDA--ASKVMEQEWREKAKKDL------EEWNQRQ--SEQVEKNKINNRIA 141
Query: 525 DKD 527
DK
Sbjct: 142 DKA 144
Score = 30.5 bits (68), Expect = 1.2
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 11 RQEAKLSEMSEEEIHRNQEI-HRNQQEMHNGYVDKSPTQLHKGYSTQVLNR 60
Q +L E+ QE + ++++ +S Q+ K ++ NR
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS-EQVEK---NKINNR 139
Score = 29.0 bits (64), Expect = 3.7
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 587 DPRQRRLAQQQQEKMLSNKTSQVPEKLSFKEKMKMFAMETGEDGTPR-----DKVKIS-- 639
+P R +++Q K L + +++ + A + E+ R +K KI+
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVM---EQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 640 ------RAQRDID 646
Q D D
Sbjct: 140 IADKAFYQQPDAD 152
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 36.9 bits (86), Expect = 0.021
Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI---VTLEIA 176
G ++ V+ G + G ++AGD + ++G+ + + T V L +
Sbjct: 264 GAFVSEVLPGSGSAKAG-VKAGDIITSLNGKP---LNSFAELRSRIATTEPGTKVKLGLL 319
Query: 177 KQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQN 220
+ G TL + S + + ++ + +
Sbjct: 320 RNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGK 363
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 35.3 bits (82), Expect = 0.055
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G ++ V+ G + G ++AGD + ++G+ L + ++ G V L + + G
Sbjct: 264 GAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNG 322
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 35.4 bits (82), Expect = 0.062
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
G +D G + V A+ G L+AGD + +++ + TQ K L+R G V
Sbjct: 276 GYPEDFQGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVGSTVK 334
Query: 173 LEIAKQGAIYHGLATLLSQPS 193
+ + + A + S
Sbjct: 335 IIVERDNKPLTLSAVVTDIKS 355
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 35.0 bits (81), Expect = 0.086
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI---VTLEIA 176
G ++ V+ +A G ++AGD + ++G+ I+ A V T P+ +TL +
Sbjct: 287 GAFVSQVLPNSSAAKAG-IKAGDVITSLNGKP---ISSFAALRAQVGTMPVGSKLTLGLL 342
Query: 177 KQG 179
+ G
Sbjct: 343 RDG 345
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 32.5 bits (73), Expect = 0.15
Identities = 10/57 (17%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 120 GIYIKSVVKGG-AADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
+ +K V + + + + GD++L+++G + + E+ + + +T + L I
Sbjct: 45 TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI 101
Score = 29.0 bits (64), Expect = 1.8
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ GD++L+++G + + E+ + + +T + L I
Sbjct: 62 NAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI 101
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 33.1 bits (75), Expect = 0.16
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 2/109 (1%)
Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
S S E G G ++ V + G D ++ ++G L
Sbjct: 4 SSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKAN 63
Query: 167 TGPIVTLEI--AKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQR 213
V + I +K + T + G + S +
Sbjct: 64 VEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANEN 112
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 31.3 bits (70), Expect = 1.0
Identities = 7/46 (15%), Positives = 10/46 (21%), Gaps = 5/46 (10%)
Query: 228 VGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADP 273
+G SHH V + + A P
Sbjct: 1 MGSSHHHHHHSSG-----LVPRGSHMVIPSASVTSAASDFLAALHP 41
Score = 30.1 bits (67), Expect = 2.6
Identities = 8/46 (17%), Positives = 10/46 (21%), Gaps = 1/46 (2%)
Query: 231 SHHPAPGPGSGMNH-HPVVSRQASTPSLPQASPYPAPAPAPADPER 275
S + HP V+ P P A P
Sbjct: 25 SASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses,
GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus
kaustophilus}
Length = 101
Score = 28.8 bits (65), Expect = 1.6
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 14/49 (28%)
Query: 461 KLTLEEREKALKELD--EIINSIKITRNIREFGSLDLSTSDRNKDFKKS 507
+LT EE + L++ D ++ + I + R F +D+ +
Sbjct: 2 RLTEEEVQALLEKADGWKLADERWIVKKYR-F-----------QDYLQG 38
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint
center for structura genomics, JCSG, protein structure
initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Length = 223
Score = 30.3 bits (68), Expect = 1.6
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 126 VVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
V+ G + L L +G++L + A+ ++TG +
Sbjct: 171 VLDGDVTVNDEVLGRNAWLRLPEGEALSATAGARGAKIWMKTGHL 215
>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi,
papain, phytocystatin, allergen, disulfide bond,
hydrolase, protease; 2.03A {Colocasia esculenta}
Length = 91
Score = 28.8 bits (64), Expect = 1.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 541 RELNNNISNNESEEPAEFTVGKVNLGLNSILRQSTVVK 578
++ ++ E EE A F V + N N++L+ S +VK
Sbjct: 7 VDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVK 44
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 5/24 (20%)
Query: 250 RQASTPSLPQAS--PYPAPAPAPA 271
+Q + L QAS Y A APA
Sbjct: 19 KQ-ALKKL-QASLKLY-ADDSAPA 39
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 30.5 bits (68), Expect = 2.3
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 125 SVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY 182
+ + G G + +DG++ + ++ G + ++ +G
Sbjct: 762 NEGEKSPIFEYGIDPTGYLIEDIDGET---VGAGSNIYRVLSEKAGTSARIRLSGKGGDK 818
Query: 183 HGLA-TLLSQPSPVMTRGQVKTYESTIS 209
L +L + R V+ +
Sbjct: 819 RDLMIDILDDDRFIRYRSWVEANRRYVH 846
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 28.4 bits (63), Expect = 2.6
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
+ + A + G +L VDG + T+ +A G
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFG 61
>2q17_A Formylglycine generating enzyme; FGE, sulfatase, unknown function;
2.10A {Streptomyces coelicolor}
Length = 346
Score = 30.0 bits (67), Expect = 2.9
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 232 HH-----PAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPER 275
HH P P P G++ + Q P A+P PA A P R
Sbjct: 3 HHHHHGKPIPNPLLGLDSTENLYFQGIDPFTDVAAPSPAAAAEPGPAAR 51
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 29.2 bits (66), Expect = 4.5
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 120 GIYIKSVVKGGAAD----------ANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
G+ + G A GRL GD + V+G + + + G
Sbjct: 252 GVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGD 311
Query: 170 IVTLEIAKQG 179
VT+E+ +
Sbjct: 312 EVTVEVLRGD 321
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 29.3 bits (65), Expect = 5.0
Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 8/148 (5%)
Query: 478 INSI-KITRNIREFGSLDLSTSDRNKDFKKSRFLSSMLELNFSEMKIDDKDDNKFNNNNM 536
INS+ ++ ++ T + K LS ++ + + + + + NN +
Sbjct: 21 INSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPL 80
Query: 537 DPDNRELNNNISNNESEEPAEFTVGKVNLGLNSILRQSTVVKLDL-----RMFKKDPRQR 591
D NNN+ N ++ ++ N+G IL + L L R
Sbjct: 81 DNFKCIENNNVVINSAKAMGGISI--TNIGAGDILEGREHLILGLVWQIIRRGLLGKIDI 138
Query: 592 RLAQQQQEKMLSNKTSQVPEKLSFKEKM 619
L + + ++T +L ++ +
Sbjct: 139 TLHPELYRLLEEDETLDQFLRLPPEKIL 166
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 29.2 bits (66), Expect = 5.4
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 253 STPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQAGDQLLKVD-GQSLVGITQEK 311
+T + + A A+ + ++ GRL G +++ D +G
Sbjct: 486 ATWRTDGVARFHTTALPIAEGMQVLGPDDLFA---GRLPDGKKVVVYDDDHYYLGGV--- 539
Query: 312 AAEYLVRTGPIVTL 325
AE L + G V++
Sbjct: 540 VAELLAQKGYEVSI 553
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 28.8 bits (65), Expect = 6.1
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 232 HHPAPGP---GSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNL 280
HH + G GS M ++Q +T S P ADP Y L
Sbjct: 8 HHHSSGLVPRGSHMRR----TQQGTTASPPVLDLGALGQDFAADPYPTYARL 55
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 28.8 bits (65), Expect = 6.8
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 228 VGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNL 280
+G SHH +H + + S + + YP Y L
Sbjct: 1 MGSSHHHH-------HHSSGLVPRGSHMTSAEPRAYPFNDVHGLTLAGRYGEL 46
>2pu3_A Endonuclease I; cold adaptation, salt adaptation, psychrophilic
enzymes, END I, hydrolase; 1.50A {Vibrio salmonicida}
PDB: 1ouo_A 1oup_A 2ivk_A 2vnd_A 2g7e_A 2g7f_A
Length = 211
Score = 28.2 bits (62), Expect = 8.2
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 3 SHSVRDMLRQEAKLSEMSEEEIHRNQEIHRNQQEMHNGYVDK 44
S + R ++ K +S E R++ I + Q HN +V K
Sbjct: 169 SKAQRQLMEAWNKQYPVSTWECTRDERIAKIQGN-HNQFVYK 209
>2j4x_A Mitogen; bacterial superantigen, signaling protein; 1.95A
{Streptococcus dysgalactiae}
Length = 213
Score = 28.2 bits (62), Expect = 8.3
Identities = 28/177 (15%), Positives = 47/177 (26%), Gaps = 27/177 (15%)
Query: 356 NKFKCYKTPKDNELCLCEDIFQQHQAKLIDCDSEDAKAVSSYTNNTESEQVKENVDVDTA 415
K + + IF ++ + D K +SS + + + KE +VD
Sbjct: 16 KDVINKTNMKITKKIGTQLIFNTNEKTRVWDDDNYNKVISSNVSPAQERRFKEEEEVDIY 75
Query: 416 SSSMS-ECCCNHSDNTTS---TQSSDNNSEPK---------QEVHQSTSVDVVETNKDKL 462
+ S C N ++SD Q + S + +
Sbjct: 76 ALIKSYSVICKEQYNYVDGGLIKTSDREKLDSTIYMNIFGEQIPLKEQSKYKITFQNKFV 135
Query: 463 TLEE------------REKALKELDEIINS--IKITRNIREFGSLDLSTSDRNKDFK 505
T +E L E + I I DL T D +
Sbjct: 136 TFQEIDVRLRKSLMSDNRIKLYEHNSICKKGYWGIHYKDNTTKFTDLFTHPNYTDNE 192
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 28.6 bits (63), Expect = 8.6
Identities = 9/80 (11%), Positives = 19/80 (23%)
Query: 18 EMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNRPPPGPERGDRPASAYLP 77
E+ + + E + P G R + ++
Sbjct: 271 YEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPC 330
Query: 78 NYPGTPPNRLDSSMKSHSVR 97
P + P+ L + V
Sbjct: 331 TRPPSAPHYLTAVGMGAKVE 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.125 0.345
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,666,868
Number of extensions: 572423
Number of successful extensions: 1621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1542
Number of HSP's successfully gapped: 394
Length of query: 684
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 584
Effective length of database: 3,909,693
Effective search space: 2283260712
Effective search space used: 2283260712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)