RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy254
(187 letters)
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain. This domain of the
is actually a small beta-barrel domain nested within a
larger TIM barrel. The active site is found in a cleft
between the two domains.
Length = 348
Score = 191 bits (488), Expect = 1e-60
Identities = 74/148 (50%), Positives = 96/148 (64%), Gaps = 7/148 (4%)
Query: 35 RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
R T I+CTIGPA+ +V+ LEK+I+ GMN+AR+NFSHGS+EYH I N+R+A E +
Sbjct: 2 RRTKIVCTIGPATDSVENLEKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAEEKLGGLV 61
Query: 95 GMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYT 154
AIALDTKGPEIRTGL + G ++EL G ++TD A+ G +YVDY
Sbjct: 62 ------AIALDTKGPEIRTGLFK-DGKKDIELKAGDKFLVSTDPAYKGAGDKEKIYVDYK 114
Query: 155 NITKVVKPGSRIFVDDGLISLVVKSIVK 182
N+TK V PG I VDDG++SL V
Sbjct: 115 NLTKDVSPGGIILVDDGVLSLKVLEKDD 142
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer.
Length = 480
Score = 194 bits (494), Expect = 3e-60
Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 9/148 (6%)
Query: 35 RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
R T I+CTIGPA+ +V+ L+K+I+ GMN+AR+NFSHGS+EYH I N+R+A E
Sbjct: 2 RRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKT---- 57
Query: 95 GMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYT 154
+AIALDTKGPEIRTGL +GG ++ L G +TTD A A+KG+ +YVDY
Sbjct: 58 --GGPVAIALDTKGPEIRTGLFKGG--KDISLKAGDKFLVTTDPA-AKKGTKEKIYVDYK 112
Query: 155 NITKVVKPGSRIFVDDGLISLVVKSIVK 182
N+TK V PG+ I VDDGL+SL V S
Sbjct: 113 NLTKDVSPGNTILVDDGLLSLKVLSKDD 140
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a
homotetramer. Some forms are active only in the presence
of fructose-1,6-bisphosphate or similar phosphorylated
sugars [Energy metabolism, Glycolysis/gluconeogenesis].
Length = 473
Score = 177 bits (451), Expect = 7e-54
Identities = 74/146 (50%), Positives = 100/146 (68%), Gaps = 10/146 (6%)
Query: 35 RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
R T I+CTIGPA+ + +ML+K+++ GMN+ARLNFSHGS+E HG+ I+N+R+A E + +
Sbjct: 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPV 60
Query: 95 GMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYT 154
AI LDTKGPEIRTG ++GG V+L KG + +TTD +G D+ VDY
Sbjct: 61 ------AILLDTKGPEIRTGEIKGG---PVKLKKGDKVIITTDDI-KGEGDEEDVSVDYK 110
Query: 155 NITKVVKPGSRIFVDDGLISLVVKSI 180
+TK V G +I VDDG ISLVV S+
Sbjct: 111 GLTKDVSEGDKILVDDGKISLVVVSV 136
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 163 bits (414), Expect = 2e-48
Identities = 71/146 (48%), Positives = 95/146 (65%), Gaps = 10/146 (6%)
Query: 35 RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
R T I+ T+GPA+ + +MLEK+IE GMN+ RLNFSHG +E H + I N+R+A ++++
Sbjct: 5 RKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREA----AEKL 60
Query: 95 GMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYT 154
G P +AI LD KGP+IRTG +GG VEL KG+ LTTD E G + VDY
Sbjct: 61 GRP--VAILLDLKGPKIRTGKFKGGA---VELEKGEKFTLTTDDKVGE-GDEERVSVDYK 114
Query: 155 NITKVVKPGSRIFVDDGLISLVVKSI 180
++ K VKPG RI +DDG I L V +
Sbjct: 115 DLAKDVKPGDRILLDDGKIELRVVEV 140
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 154 bits (393), Expect = 3e-45
Identities = 60/146 (41%), Positives = 86/146 (58%), Gaps = 11/146 (7%)
Query: 35 RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
R T I+ T+GPAS + + LEK+IE G+N+ RLNFSHGS+E HG+ +R+ + ++
Sbjct: 4 RRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREI----AAKL 59
Query: 95 GMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYT 154
G P +AI LD KGP+IR G + G ++ L G L TD E+G + VDY
Sbjct: 60 GRP--VAILLDLKGPKIRVGKFKEG---KITLKTGDKFTLDTDQ--KEEGDKERVGVDYK 112
Query: 155 NITKVVKPGSRIFVDDGLISLVVKSI 180
+ K VKPG + +DDG + L V +
Sbjct: 113 GLPKDVKPGDILLLDDGKLQLKVVEV 138
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional.
Length = 470
Score = 154 bits (390), Expect = 5e-45
Identities = 65/144 (45%), Positives = 86/144 (59%), Gaps = 10/144 (6%)
Query: 37 TGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGM 96
T I+CTIGP + + +ML K+++ GMN+ RLNFSHG Y HGQ IKN+R + K+
Sbjct: 4 TKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKA-- 61
Query: 97 PHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNI 156
AI LDTKGPEIRT L+GG +V L GQT TTD + G+ + V Y
Sbjct: 62 ----AILLDTKGPEIRTMKLEGG--NDVSLKAGQTFTFTTDKSV--VGNKERVAVTYEGF 113
Query: 157 TKVVKPGSRIFVDDGLISLVVKSI 180
T + G+ + VDDGLI + V +I
Sbjct: 114 TADLSVGNTVLVDDGLIGMEVTAI 137
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase.
Length = 511
Score = 153 bits (389), Expect = 1e-44
Identities = 74/167 (44%), Positives = 97/167 (58%), Gaps = 12/167 (7%)
Query: 13 LAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGS 72
+A L GL T I+CT+GPAS +V MLEK++ GMN+AR NFSHGS
Sbjct: 1 MANIDIEGILKGLP--ADGLRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGS 58
Query: 73 YEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTI 132
+EYH +T+ N+RQA+ N A+ LDTKGPEIRTG L+ G V+L +GQ I
Sbjct: 59 HEYHQETLDNLRQAMANTGILC------AVMLDTKGPEIRTGFLKDGKP--VQLKQGQEI 110
Query: 133 RLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKS 179
+TTD ++ KG + + Y + VKPGS I DG I+L V S
Sbjct: 111 TITTD--YSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLS 155
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional.
Length = 590
Score = 145 bits (367), Expect = 5e-41
Identities = 61/146 (41%), Positives = 81/146 (55%), Gaps = 12/146 (8%)
Query: 35 RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
R T I+ TIGPAS + + L ++IE G ARLNFSHG +E HG IKNIR+A SK++
Sbjct: 8 RRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREA----SKKL 63
Query: 95 GMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYT 154
G + I D +GP+IR G + G +EL G LT+ G+ V Y
Sbjct: 64 GKT--VGILQDLQGPKIRLGRFEDGP---IELKTGDEFILTSREV---LGTQEKFSVTYD 115
Query: 155 NITKVVKPGSRIFVDDGLISLVVKSI 180
+ V GSRI +DDGLI L V+ +
Sbjct: 116 GLADEVPVGSRILLDDGLIELEVEEV 141
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 134 bits (338), Expect = 3e-37
Identities = 64/151 (42%), Positives = 90/151 (59%), Gaps = 11/151 (7%)
Query: 35 RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
+ T I+CT+GPA V+ L K+I+ GMNI R NFSHG +E H +T+ N+R+A + R
Sbjct: 38 KKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAK---AR- 93
Query: 95 GMPHA-LAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDY 153
P+A L I LDTKGPEIRTG L+ + L +GQT+++TTD F G T + Y
Sbjct: 94 --PNANLGILLDTKGPEIRTGFLKNH--KPITLKEGQTLKITTDYTF--LGDETCISCSY 147
Query: 154 TNITKVVKPGSRIFVDDGLISLVVKSIVKSY 184
+ + VK G+ I + DG +S V + Y
Sbjct: 148 KKLPQSVKVGNIILIADGSLSCKVLEVHDDY 178
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional.
Length = 454
Score = 129 bits (325), Expect = 1e-35
Identities = 62/119 (52%), Positives = 82/119 (68%), Gaps = 9/119 (7%)
Query: 61 MNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGG 120
M++AR+NFSHGS+EYH TI N+RQA I AIALDTKGPEIRTGL GG
Sbjct: 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNI------AIALDTKGPEIRTGLFVGGE 54
Query: 121 SAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKS 179
+ + +G T +TTD AFA+KG+ Y+DY N++KVV+PG I++DDG++ L V+S
Sbjct: 55 AV---MERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGGYIYIDDGILILHVQS 110
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional.
Length = 476
Score = 120 bits (303), Expect = 2e-32
Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 12/146 (8%)
Query: 35 RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
R I+ T+GPAS + DM+ K++E G ++ RLNFSHG ++ H + K IR+ + + I
Sbjct: 5 RRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGRPI 64
Query: 95 GMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYT 154
G I D +GP++R G G +V+L GQT RL D A G + + +
Sbjct: 65 G------ILADLQGPKLRLGRFADG---KVQLANGQTFRLDVDDA---PGDHDRVSLPHP 112
Query: 155 NITKVVKPGSRIFVDDGLISLVVKSI 180
I +KPG R+ VDDG + LVV++
Sbjct: 113 EIAAALKPGDRLLVDDGKVRLVVEAC 138
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase.
Length = 526
Score = 104 bits (262), Expect = 1e-26
Identities = 50/144 (34%), Positives = 86/144 (59%), Gaps = 11/144 (7%)
Query: 25 LDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIR 84
L+ S + LT I+ T+GP S +V+++E ++ GM++AR +FS G EYH +T++N++
Sbjct: 18 LEPSKPSFFPALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLK 77
Query: 85 QAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKG 144
AV+N +K++ A+ LDT GPE++ + + L G T+ LT D +++
Sbjct: 78 IAVKN-TKKL-----CAVMLDTVGPELQ---VINKTEKPISLKAGNTVTLTPDQ--SKEA 126
Query: 145 SATDLYVDYTNITKVVKPGSRIFV 168
S+ L +++ + K VKPG IFV
Sbjct: 127 SSEVLPINFPGLAKAVKPGDTIFV 150
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase.
Length = 581
Score = 96.9 bits (241), Expect = 1e-23
Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 20/154 (12%)
Query: 30 KSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIR----Q 85
K S R T I+CTIGP++ +M+ K+ E GMN+ARLN SHG + H + I ++ Q
Sbjct: 105 KPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQ 164
Query: 86 AVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGS 145
+ +N +AI LDTKGPE+R+G L + L +GQ T +
Sbjct: 165 SKDN---------VIAIMLDTKGPEVRSGDL----PQPIMLEEGQEFTFTIKRGV---ST 208
Query: 146 ATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKS 179
+ V+Y + V+ G + VD G++SL VKS
Sbjct: 209 EDCVSVNYDDFVNDVEVGDMLLVDGGMMSLAVKS 242
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated.
Length = 352
Score = 93.1 bits (231), Expect = 7e-23
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 16/141 (11%)
Query: 40 ICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHA 99
ICTIGPAS + L ++I GM I RLN SHG++E H I+ ++ + +
Sbjct: 6 ICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKS----------LDDS 55
Query: 100 LAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKV 159
+ I D +GP+IR G ++G ++ L G + L T GS+T+ VDY I
Sbjct: 56 IKILGDVQGPKIRLGEIKG---EQITLQAGDSFILHTQPV---TGSSTEASVDYEGIAND 109
Query: 160 VKPGSRIFVDDGLISLVVKSI 180
VK GSRI ++DG + L+V+ +
Sbjct: 110 VKVGSRILMNDGEVELIVEKV 130
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit.
Length = 509
Score = 82.5 bits (204), Expect = 1e-18
Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 34 VRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKR 93
R T ++CTIGPA + LE + GMN+ARLN HG+ E+H I+ +R+ E
Sbjct: 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG-- 81
Query: 94 IGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDY 153
A+A+ +DT+G EI G L G SA+ E G+ T F + V+Y
Sbjct: 82 ----FAVAVMMDTEGSEIHMGDLGGASSAKAE--DGE-EWTFTVRKFDGSRPEFTIQVNY 134
Query: 154 TNITKVVKPGSRIFVDDGLISLVV 177
+ VK G + VD G++ V
Sbjct: 135 DGFAEDVKVGDELVVDGGMVRFEV 158
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated.
Length = 493
Score = 62.7 bits (153), Expect = 6e-12
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 35 RLTGIICTIGPASVAVD---MLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYS 91
R T I+ T+ P+ A D +L + E GM+ AR+N +H I ++RQA
Sbjct: 133 RRTRIMVTL-PSEAADDPDFVLR-LAERGMDCARINCAHDDPAAWQAMIGHLRQAERATG 190
Query: 92 KRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAF-AEKGSATDLY 150
+R I +D GP+IRTG + G + L G + L +
Sbjct: 191 RRC------KILMDLAGPKIRTGAV-AGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVT 243
Query: 151 VDYTNITKVVKPGSRIFVDDGLISLVVKSI 180
I + G+R+++DDG + V+ +
Sbjct: 244 CTLPEILARLAVGARVWIDDGKLGARVERV 273
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 50.7 bits (122), Expect = 8e-08
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 51 DMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPE 110
D++ +++ GM+IAR+N +H E I N+R A + +G IA+D GP+
Sbjct: 156 DLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTA----EEELGRR--CRIAMDLAGPK 209
Query: 111 IRTG 114
+RTG
Sbjct: 210 LRTG 213
Score = 26.8 bits (60), Expect = 8.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 160 VKPGSRIFVDDGLISLVV 177
+ G R++ DDG I VV
Sbjct: 373 ARVGERVWFDDGKIGAVV 390
>gnl|CDD|215751 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).
Length = 269
Score = 29.6 bits (67), Expect = 0.84
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 51 DMLEKIIETGMNIARLNFSHGSY-----EYH-GQTIKNIRQAVENYSKRIGM 96
M++ + + G N+ RL S G Y +Y + N V +Y+ GM
Sbjct: 26 AMIDLVKDWGFNVVRLPVSWGGYVPNNPDYLIDENWLNRVDEVVDYAIDNGM 77
>gnl|CDD|146788 pfam04336, DUF479, Protein of unknown function, DUF479. This
family includes several bacterial proteins of
uncharacterized function.
Length = 106
Score = 28.3 bits (64), Expect = 0.93
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 71 GSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDT 106
GSY ++ I +A++ ++R+ P+ LA A++
Sbjct: 53 GSY----ADLEGIERALDRMARRLSRPNPLAGAVEE 84
>gnl|CDD|224895 COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid
transport and metabolism].
Length = 314
Score = 28.3 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 123 EVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDG 171
E+ L G T+ T+DA A G+ + +D + V P S V G
Sbjct: 53 EITL-GGPTLEFTSDALIALTGADCEATLD----GQEVPPWSPYLVKAG 96
>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate
transaminase. Members of this family are
2-aminoethylphosphonate--pyruvate transaminase. This
enzyme acts on the most common type of naturally
occurring phosphonate. It interconverts
2-aminoethylphosphonate plus pyruvate with
2-phosphonoacetaldehyde plus alanine. The enzyme
phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually
encoded by an adjacent gene, then cleaves the C-P bond
of phosphonoacetaldehyde, adding water to yield
acetaldehyde plus inorganic phosphate. Species with this
pathway generally have an identified phosphonate ABC
transporter but do not also have the multisubunit C-P
lysase complex as found in Escherichia coli [Central
intermediary metabolism, Phosphorus compounds].
Length = 363
Score = 27.8 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 102 IALDTKGPEIRTGLLQGGGSAEVELVKGQTI 132
+AL T + LLQG G+ VE V G +
Sbjct: 45 LALATAEEGYTSVLLQGSGTFAVEAVIGSAV 75
>gnl|CDD|221138 pfam11573, Med23, Mediator complex subunit 23. Med23 is one of the
subunits of the Tail portion of the Mediator complex that
regulates RNA polymerase II activity. Med23 is required
for heat-shock-specific gene expression, and has been
shown to mediate transcriptional activation of E1A in
mice.
Length = 1341
Score = 27.5 bits (61), Expect = 5.7
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 32 SYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQA-VENY 90
++ G+I P + + ++IIE + LN+++ Y + KN+ ++ +EN
Sbjct: 1174 NWFNAIGLIMAALPEAYWKVLHDRIIEVLNSPEMLNWTYRQYPFELFNFKNVEESMLENL 1233
Query: 91 SKR 93
Sbjct: 1234 PNS 1236
>gnl|CDD|218418 pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU,
encoding the human orthologue of Drosophila suppressor
of fused, appears to have a conserved role in the
repression of Hedgehog signaling. SUFU exerts its
repressor role by physically interacting with GLI
proteins in both the cytoplasm and the nucleus. SUFU has
been found to be a tumour-suppressor gene that
predisposes individuals to medulloblastoma by modulating
the SHH signaling pathway. Genomic contextual analysis
of bacterial SUFU versions revealed that they are
immunity proteins against diverse nuclease toxins in
polymorphic toxin systems.
Length = 168
Score = 26.9 bits (60), Expect = 5.7
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 62 NIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGG 119
N+AR F G++ G TI N E + + L A PE+ GG
Sbjct: 71 NLARYPFESGTWLGPGHTIPNGG--PEPLAPDTKLTALLLTAPFLFDPELPELDTPGG 126
>gnl|CDD|149159 pfam07925, RdRP_5, Reovirus RNA-dependent RNA polymerase lambda 3.
The sequences in this family are similar to the reoviral
minor core protein lambda 3, which functions as a
RNA-dependent RNA polymerase within the protein capsid.
It is organised into 3 domains. N- and C-terminal
domains create a 'cage' that encloses a conserved
central catalytic domain within a hollow centre; this
catalytic domain is arranged to form 'fingers', 'palm'
and 'thumb' subdomains. Unlike other RNA polymerases,
like HIV reverse transcriptase and T7 RNA polymerase,
lambda 3 protein binds template and substrate with only
localised rearrangements, and catalytic activity can
occur with little structural change. However, the
structure of the catalytic complex is similar to that of
other polymerase catalytic complexes with known
structure.
Length = 1271
Score = 27.2 bits (60), Expect = 6.3
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 55 KIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMP 97
KI + +A L FSH IR V+ ++ I MP
Sbjct: 493 KIYQAA-QLANLPFSHLIVAILADVTMGIRNQVQRRARSI-MP 533
>gnl|CDD|149587 pfam08586, Rsc14, RSC complex, Rsc14/Ldb7 subunit. RSC is an
ATP-dependent chromatin remodelling complex found in
yeast. The RSC components Rsc7/Npl6 and Rsc14/Ldb7
interact physically and/or functionally with Rsc3,
Rsc30, and Htl1 to form a module important for a broad
range of RSC functions.
Length = 101
Score = 25.9 bits (57), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 3 GYVPPSQLRALAANTF 18
GYVP QL +L++ F
Sbjct: 85 GYVPRQQLESLSSTDF 100
>gnl|CDD|143332 cd02439, DMB-PRT_CobT, Nicotinate-nucleotide-dimethylbenzimidazole
phosphoribosyltransferase (DMB-PRT), also called CobT.
Nicotinate-nucleotide-dimethylbenzimidazole
phosphoribosyltransferase (DMB-PRT/CobT, not to be
confused with the CobT subunit of cobaltochelatase,
which does not belong to this group) catalyzes the
synthesis of alpha-ribazole-5'-phosphate, from
nicotinate mononucleotide (NAMN) and
5,6-dimethylbenzimidazole (DMB). This function is
essential to the anaerobic biosynthesis pathway of
cobalamin (vitamin B12), which is the largest and most
complex cofactor in a number of enzyme-catalyzed
reactions in bacteria, archaea and eukaryotes. Only
eubacteria and archaebacteria can synthesize vitamin
B12; multicellular organisms have lost this ability
during evolution. DMB-PRT/CobT works sequentially with
CobC (a phosphatase) to couple the lower ligand of
cobalamin to a ribosyl moiety. DMB is the most common
lower ligand of cobamides; other lower ligands include
adenine, 5-methoxybenzimidazole or phenol. It has been
suggested that earlier metabolic or enzymatic steps may
control which lower ligand is available to DMB-PRT/CobT.
In Salmonella enterica, for example, the lower ligand is
DMB under aerobic conditions and adenine or
2-methyladenine under anaerobic conditions. Salmonella
enterica DMB-PRT/CobT is a homodimer with two active
sites, each active site is comprised of residues from
both monomers. This group includes two distinct
subfamilies, one archaeal-like, the other comprised of
bacterial sequences.
Length = 315
Score = 26.7 bits (60), Expect = 8.5
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 11 RALAANTFVDHL---CGLDIDNKSSYVRLTGIIC-----TIGPASVAVDMLEKIIETGMN 62
ALA D L GL +D + L + GPA + + E +E G+
Sbjct: 70 NALARLAGADLLVVDAGLAVDPPVPPILLGKVRGGTANFAKGPA-MTREEAEAALEAGIE 128
Query: 63 IAR 65
+AR
Sbjct: 129 LAR 131
>gnl|CDD|219154 pfam06738, DUF1212, Protein of unknown function (DUF1212). This
family represents a conserved region within a number of
hypothetical membrane proteins of unknown function found
in eukaryotes, bacteria and archaea.
Length = 193
Score = 26.3 bits (59), Expect = 9.3
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 25 LDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARL--------NFSHGSY--- 73
L +++ +V TGII + ++ + ++ G+N+ +L G
Sbjct: 26 LGLESVEVFVTPTGIIISFDDDGTSITRVRRVRPRGINLGKLSEVNELSREVEAGEISLE 85
Query: 74 EYHGQTIKNIRQAVENYSKRIGMPHALAIAL 104
E H + + I +A Y + + LA L
Sbjct: 86 EAH-ERLDEIDRAPPPYPRWL---VVLAAGL 112
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional.
Length = 411
Score = 26.4 bits (59), Expect = 9.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 83 IRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGG-GSAEVELVKG 129
I QA + KR+G A L +++ G+L GG G + E ++G
Sbjct: 190 IEQAAHEFYKRVGE-KANEAFLPLLEGKLK-GILIGGPGPTKEEFLEG 235
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 26.1 bits (58), Expect = 9.9
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 82 NIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTI 132
N+ A+ +Y R+ M H+ I LD G E + L E ++G T+
Sbjct: 208 NMEDAL-DYGNRLIMLHSGKIVLDVTGEE-KASLTVLDLIQMFEKIRGATL 256
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.381
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,488,013
Number of extensions: 885769
Number of successful extensions: 926
Number of sequences better than 10.0: 1
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 42
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)