RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy254
(187 letters)
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 122 bits (308), Expect = 3e-35
Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 9 QLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNF 68
QL A A+TF++H C LDID+ R TGIICTIGPAS +V+ L+++I++GMN+AR+NF
Sbjct: 5 QLHAAMADTFLEHKCRLDIDSAPITARNTGIICTIGPASRSVETLKEMIKSGMNVARMNF 64
Query: 69 SHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVK 128
SHG++EYH +TIKN+R A E+++ + +A+ALDTKGP + +Q + V
Sbjct: 65 SHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKDIQDLKFGVEQDVD 124
Query: 129 GQTIRLTTDAA--------FAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSI 180
AA EKG + N V + + DG++
Sbjct: 125 MVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLG 184
Query: 181 VK 182
++
Sbjct: 185 IE 186
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
domain {Leishmania mexicana [TaxId: 5665]}
Length = 258
Score = 106 bits (266), Expect = 2e-29
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 3/160 (1%)
Query: 17 TFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYH 76
+ + H L I + + R IICTIGP++ +V+ L+ +I++GM++AR+NFSHGS+EYH
Sbjct: 1 SQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYH 60
Query: 77 GQTIKNIRQAVENYSKRIGMPHALAIALDTKGPE---IRTGLLQGGGSAEVELVKGQTIR 133
TI N+RQA I + + ++ G+ QG ++
Sbjct: 61 QTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQV 120
Query: 134 LTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLI 173
A KG + N V S I DG++
Sbjct: 121 GDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIM 160
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 265
Score = 99.7 bits (248), Expect = 2e-26
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 17 TFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYH 76
+ ++ L L++ S R T II TIGP + + L + + G+NI R+NFSHGSYEYH
Sbjct: 2 SRLERLTSLNVVAGSDL-RRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYH 60
Query: 77 GQTIKNIRQAVENYSKR 93
I N R++ E Y R
Sbjct: 61 KSVIDNARKSEELYPGR 77
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 246
Score = 94.3 bits (234), Expect = 1e-24
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 35 RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
+ T I+CTIGP + + +ML K+++ GMN+ RLNFSHG Y HGQ I+N+R + K
Sbjct: 2 KKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTA 61
Query: 95 GMPH 98
+
Sbjct: 62 AILL 65
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 102
Score = 83.8 bits (207), Expect = 4e-22
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 109 PEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFV 168
PEIRTGL++G G+AEVEL KG T+++T D A+ EK L++DY NI KVV GS+++V
Sbjct: 1 PEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVDVGSKVYV 60
Query: 169 DDGLISLVVKSIVK 182
DDGLISL VK
Sbjct: 61 DDGLISLQVKQKGP 74
>d2vgba1 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 102
Score = 75.3 bits (185), Expect = 8e-19
Identities = 43/72 (59%), Positives = 55/72 (76%)
Query: 109 PEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFV 168
PEIRTG+LQGG +EVELVKG + +T D AF +G+A ++VDY NI +VV G RI++
Sbjct: 1 PEIRTGILQGGPESEVELVKGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPVGGRIYI 60
Query: 169 DDGLISLVVKSI 180
DDGLISLVV+ I
Sbjct: 61 DDGLISLVVQKI 72
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 101
Score = 70.7 bits (173), Expect = 4e-17
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 109 PEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFV 168
PEIRTG + + + TTD +A+ +YVDY NITKV+ G I+V
Sbjct: 1 PEIRTGTTTND--VDYPIPPNHEMIFTTDDKYAKACDDKIMYVDYKNITKVISAGRIIYV 58
Query: 169 DDGLISLVVKSIVK 182
DDG++S V +V
Sbjct: 59 DDGVLSFQVLEVVD 72
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania
mexicana [TaxId: 5665]}
Length = 99
Score = 69.2 bits (169), Expect = 2e-16
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 110 EIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVD 169
EIRTG GG + + +G T +TTD AFA+KG+ Y+DY N++KVV+PG+ I++D
Sbjct: 1 EIRTGQFVGG---DAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYID 57
Query: 170 DGLISLVVKSIVKSY 184
DG++ L V+S
Sbjct: 58 DGILILQVQSHEDEQ 72
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli
[TaxId: 562]}
Length = 98
Score = 61.9 bits (150), Expect = 1e-13
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 109 PEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFV 168
PEIRT L+GG +V L GQT TTD + G++ + V Y T + G+ + V
Sbjct: 1 PEIRTMKLEGG--NDVSLKAGQTFTFTTDKSV--IGNSEMVAVTYEGFTTDLSVGNTVLV 56
Query: 169 DDGLISLVVKSI 180
DDGLI + V +I
Sbjct: 57 DDGLIGMEVTAI 68
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 28.3 bits (63), Expect = 0.44
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 62 NIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRT 113
+AR F + G + ++N RI + + D + ++T
Sbjct: 117 GLARYVFQSENTFCSGDHVSW-HSPLDNSESRIQ---HMLLTEDPQMQPVQT 164
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 25.3 bits (55), Expect = 3.0
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 21 HLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHG 77
L K+ +L A+V + E+ +E G I ++F ++YHG
Sbjct: 45 VLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKG--IKDVSFDRSGFQYHG 99
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 25.3 bits (55), Expect = 6.9
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 48 VAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMP 97
+ V KI + +A L FSH S T +R V+ + I MP
Sbjct: 482 LPVKAATKIFQAA-QLANLPFSHTSVAILADTSMGLRNQVQRRPRSI-MP 529
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.381
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 670,791
Number of extensions: 29217
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 15
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)