BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2540
(58 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
+ +P R+ KYPLLL + K TP H LL +A IQ L IN
Sbjct: 166 LDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLEDAILIIQGVLSDIN 212
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 33.5 bits (75), Expect = 0.027, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 11 ITVPVQRVTKYPLLLARLYKVT-PDHHTGKDL 41
+ PVQ++ KYPL LA L K T P H KD+
Sbjct: 291 LLTPVQKICKYPLQLAELLKYTHPQHRDFKDV 322
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 11 ITVPVQRVTKYPLLLARLYKVT-PDHHTGKDL 41
+ PVQ++ KYPL LA L K T P H KD+
Sbjct: 254 LLTPVQKICKYPLQLAELLKYTHPQHRDFKDV 285
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 14 PVQRVTKYPLLLARLYKVTPDHH 36
P+QR+T+YPLL+ + + TP+ H
Sbjct: 239 PMQRITRYPLLIRSILENTPESH 261
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHH 36
I P+QRVT+YPL++ + + TP++H
Sbjct: 220 ILKPMQRVTRYPLIIKNILENTPENH 245
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHH 36
I P+QRVT+YPL++ + + TP++H
Sbjct: 147 ILKPMQRVTRYPLIIKNILENTPENH 172
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHH 36
I P+QRVT+YPL++ + + TP++H
Sbjct: 147 ILKPMQRVTRYPLIIKNILENTPENH 172
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 14 PVQRVTKYPLLLARLYKVTPDHH 36
P+QR+T+YPLL+ + + TP+ H
Sbjct: 168 PMQRITRYPLLIRSILENTPESH 190
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
+ +P R+ KYPLLL + + TP+ + + L EA + IQ + IN+
Sbjct: 153 LDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINT 200
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHT 37
+ PVQ++ KYPL LA L K T H+
Sbjct: 177 LLTPVQKICKYPLQLAELLKYTAQDHS 203
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 14 PVQRVTKYPLLLARLYKVT---PDHHTGKDLLIEAQHNIQLHL 53
P+QRV KYPLLL L+ +T + H D+ I+ + + H+
Sbjct: 160 PIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTXNKVASHI 202
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 14 PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
PVQR+TKY LLL + K + H G + L EA +I L+ +N
Sbjct: 147 PVQRITKYQLLLKEMLKYS-KHCEGAEDLQEALSSILGILKAVN 189
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 14 PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
PVQR+TKY LLL + K + H G + L EA +I L+ +N
Sbjct: 147 PVQRITKYQLLLKEMLKYS-KHCEGAEDLQEALSSILGILKAVN 189
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 14 PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
PVQR+TKY LLL + K + H G + L EA +I L+ +N
Sbjct: 147 PVQRITKYQLLLKEMLKYS-KHCEGAEDLQEALSSILGILKAVN 189
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 14 PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
PVQR+TKY LLL K + H G + L EA +I L+ +N
Sbjct: 147 PVQRITKYQLLLKEXLKYS-KHCEGAEDLQEALSSILGILKAVN 189
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDL 41
+ VP+QRV KY LLL L K T D ++L
Sbjct: 157 LMVPMQRVLKYHLLLQELVKHTQDATEKENL 187
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
I +QR+TKYPLLL + K T + + L A+ + L+++N
Sbjct: 162 IISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE 209
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
I +QR+TKYPLLL + K T + + L A+ + L+++N
Sbjct: 167 IISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE 214
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
I +QR+TKYPLLL + K T + + L A+ + L+++N
Sbjct: 204 IISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVN 250
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 9 VSITVPVQRVTKYPLLLARLYKVTPDHHTGK 39
++ P R+ KYP LL L + D+HT +
Sbjct: 143 TGLSKPFMRLDKYPTLLKELERHMEDYHTDR 173
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDL 41
+ VP+QRV KY LLL L K T + ++L
Sbjct: 329 LMVPMQRVLKYHLLLQELVKHTQEAMEKENL 359
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDL 41
+ VP+QRV KY LLL L K T + ++L
Sbjct: 138 LMVPMQRVLKYHLLLQELVKHTQEAMEKENL 168
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDL 41
+ VP+QRV KY LLL L K T D ++L
Sbjct: 159 LMVPMQRVLKYHLLLQELVKHTQDATEKENL 189
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 14 PVQRVTKYPLLLARL 28
PVQR+TKY LLL L
Sbjct: 144 PVQRITKYQLLLKEL 158
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 14 PVQRVTKYPLLLARL 28
PVQRVTKY LLL L
Sbjct: 145 PVQRVTKYQLLLKEL 159
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7
A
Length = 311
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 14 PVQRVTKYPLLLARL 28
PVQR+TKY LLL L
Sbjct: 142 PVQRITKYQLLLKEL 156
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 11 ITVPVQRVTKYPLLLARLYKVT 32
I +QR+TKYPLLL + K T
Sbjct: 167 IPTQMQRLTKYPLLLDNIAKYT 188
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 11 ITVPVQRVTKYPLLLARLYKVT--PDHHTGKDLLIEAQHNIQLHLEHIN 57
I +QR+TKYPLLL + + T P +L E I L H+N
Sbjct: 169 IPTEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREI---LHHVN 214
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 11 ITVPVQRVTKYPLLLARLYKVT--PDHHTGKDLLIEAQHNIQLHLEHIN 57
I +QR+TKYPLLL + + T P +L E I L H+N
Sbjct: 322 IPTEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREI---LHHVN 367
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 11 ITVPVQRVTKYPLLLARLYKVT--PDHHTGKDLLIEAQHNIQLHLEHIN 57
I +QR+TKYPLLL + + T P +L E I L H+N
Sbjct: 167 IPTEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREI---LHHVN 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,648,839
Number of Sequences: 62578
Number of extensions: 44287
Number of successful extensions: 156
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 32
length of query: 58
length of database: 14,973,337
effective HSP length: 30
effective length of query: 28
effective length of database: 13,095,997
effective search space: 366687916
effective search space used: 366687916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)