Query psy2540
Match_columns 58
No_of_seqs 125 out of 1015
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 18:48:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1by1_A Protein (PIX); RHO-GTPa 99.9 6.4E-22 2.2E-26 117.4 5.0 57 2-58 136-192 (209)
2 3jv3_A Intersectin-1; SH3 doma 99.8 3.2E-21 1.1E-25 117.6 5.8 57 2-58 211-267 (283)
3 2z0q_A XPLN, RHO guanine nucle 99.8 2.1E-20 7E-25 116.9 6.3 57 2-58 144-200 (346)
4 1xcg_A PDZ-rhogef, RHO guanine 99.8 2.6E-20 8.8E-25 117.1 5.3 57 2-58 153-209 (368)
5 2rgn_B RHOA/RAC/CDC42 exchange 99.8 4.4E-20 1.5E-24 116.3 6.0 57 2-58 131-187 (354)
6 1foe_A T-lymphoma invasion and 99.8 3.5E-20 1.2E-24 117.0 5.4 57 2-58 148-204 (377)
7 2dfk_A Collybistin II; DH doma 99.8 1.1E-19 3.9E-24 116.0 6.1 57 2-58 168-224 (402)
8 2pz1_A RHO guanine nucleotide 99.8 2.1E-19 7.3E-24 116.0 6.1 57 2-58 245-301 (466)
9 3t06_A PDZ-rhogef, RHO guanine 99.8 1.8E-19 6.2E-24 114.8 5.3 57 2-58 195-251 (418)
10 1kz7_A Guanine nucleotide exch 99.8 5.1E-19 1.7E-23 111.4 6.0 56 2-58 135-190 (353)
11 3mpx_A FYVE, rhogef and PH dom 99.8 3.4E-19 1.2E-23 113.9 5.0 57 2-58 157-213 (434)
12 2vrw_B P95VAV, VAV1, proto-onc 99.8 3.4E-19 1.2E-23 113.5 4.9 56 2-58 148-203 (406)
13 3p6a_A RHO guanine nucleotide 99.8 6.8E-19 2.3E-23 110.8 4.6 56 2-58 160-215 (377)
14 1txd_A RHO guanine nucleotide 99.7 7.2E-19 2.5E-23 111.3 4.5 56 2-58 158-213 (385)
15 1dbh_A Protein (human SOS 1); 99.7 3.2E-19 1.1E-23 111.8 2.7 54 3-57 138-191 (354)
16 3jzy_A Intersectin 2; C2 domai 99.7 1.8E-19 6.3E-24 116.4 0.0 57 2-58 156-212 (510)
17 1nty_A Triple functional domai 99.7 3.3E-18 1.1E-22 105.9 5.5 53 3-58 131-183 (311)
18 3odw_A RHO guanine nucleotide 99.7 5.1E-18 1.8E-22 111.9 4.5 56 2-58 313-368 (536)
19 3ky9_A Proto-oncogene VAV; cal 99.7 6.7E-18 2.3E-22 111.9 4.9 56 2-58 320-375 (587)
20 3ksy_A SOS-1, SON of sevenless 99.6 1.9E-16 6.6E-21 110.5 2.5 54 3-57 335-388 (1049)
21 2lg1_A A-kinase anchor protein 95.1 0.0001 3.6E-09 43.1 -6.6 28 31-58 2-29 (185)
22 4gou_A EHRGS-rhogef; RGS domai 86.2 1.5 5.1E-05 28.0 4.7 47 1-47 315-361 (518)
23 2wzn_A TET3, 354AA long hypoth 47.3 20 0.0007 20.5 3.1 27 31-57 322-348 (354)
24 2ozb_B U4/U6 small nuclear rib 33.6 47 0.0016 20.3 3.2 24 34-57 12-35 (260)
25 4f7g_B Talin-1; alpha-helix bu 33.3 34 0.0012 20.5 2.5 31 27-57 15-45 (216)
26 2asw_A Hypothetical protein AF 27.5 41 0.0014 13.7 3.1 42 9-53 3-51 (56)
27 3ksh_A Putative uncharacterize 26.5 60 0.002 18.0 2.7 34 19-52 13-46 (160)
28 2hc5_A ORF 99, hypothetical pr 25.7 81 0.0028 16.9 3.0 23 36-58 34-56 (117)
29 2yqr_A KIAA0907 protein; struc 24.1 84 0.0029 16.8 2.9 20 37-56 81-100 (119)
30 2gww_B IPAA; protein complex, 23.7 49 0.0017 13.4 2.2 24 34-57 7-30 (30)
31 3a8y_C BAG family molecular ch 23.6 94 0.0032 17.4 3.1 25 34-58 28-52 (142)
32 3kdq_A Uncharacterized conserv 23.6 88 0.003 17.5 3.0 26 32-57 38-65 (154)
33 3lb7_A RAF proto-oncogene seri 22.2 29 0.001 20.4 0.9 34 24-57 273-306 (307)
34 3t68_A Succinyl-diaminopimelat 21.7 1E+02 0.0034 17.9 3.2 25 31-55 241-265 (268)
35 3ajm_A Programmed cell death p 21.3 88 0.003 18.7 2.8 44 14-57 92-139 (213)
36 1zzp_A P150, C-ABL, proto-onco 20.8 76 0.0026 17.5 2.3 39 18-56 85-129 (130)
37 1uk5_A BAG-family molecular ch 20.7 1.1E+02 0.0038 16.4 3.2 24 34-57 24-47 (111)
38 3rfb_A Putative uncharacterize 20.6 76 0.0026 17.9 2.4 37 17-53 12-48 (171)
No 1
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.85 E-value=6.4e-22 Score=117.43 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=54.5
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+++++|.+||++|||||+||+|||++++|+||++|||+..+++|++.+++++..||+
T Consensus 136 ~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~h~d~~~l~~Al~~i~~v~~~iNe 192 (209)
T 1by1_A 136 PGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQE 192 (209)
T ss_dssp STTTHHHHHTTSTTTGGGTHHHHHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHhhHHHHHHhHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999984
No 2
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.84 E-value=3.2e-21 Score=117.60 Aligned_cols=57 Identities=26% Similarity=0.428 Sum_probs=54.9
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
|++++|.+||++|||||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus 211 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~iNe 267 (283)
T 3jv3_A 211 CKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNE 267 (283)
T ss_dssp GTTCCHHHHTTHHHHHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHhhhhHHHhcchHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence 567999999999999999999999999999999999999999999999999999984
No 3
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.82 E-value=2.1e-20 Score=116.92 Aligned_cols=57 Identities=33% Similarity=0.438 Sum_probs=51.9
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+++++|.+||++|||||+|||+||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus 144 ~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~iN~ 200 (346)
T 2z0q_A 144 SRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINT 200 (346)
T ss_dssp ----CTTTGGGHHHHHHHHHHHHHHHHHHTSCTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999984
No 4
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=99.81 E-value=2.6e-20 Score=117.10 Aligned_cols=57 Identities=30% Similarity=0.377 Sum_probs=55.0
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
|++++|.+||++|+|||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus 153 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~ 209 (368)
T 1xcg_A 153 CRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE 209 (368)
T ss_dssp GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChHHHhhhHhhhhhhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999983
No 5
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.80 E-value=4.4e-20 Score=116.31 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=54.8
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+++++|.+||++|||||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus 131 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~in~ 187 (354)
T 2rgn_B 131 GHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCND 187 (354)
T ss_dssp CCSSCHHHHTTHHHHHHTSHHHHHHHHHHHTSSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHhhhHHHHHhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999983
No 6
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.80 E-value=3.5e-20 Score=117.04 Aligned_cols=57 Identities=30% Similarity=0.364 Sum_probs=54.7
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+++++|.+||++|||||+||||||++|+|+|+++|+|+..+++|++.+++++..||.
T Consensus 148 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~~~~v~~~iNe 204 (377)
T 1foe_A 148 QHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINE 204 (377)
T ss_dssp CGGGSHHHHTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHhccchhhhccHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999983
No 7
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=99.79 E-value=1.1e-19 Score=116.04 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=54.6
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+.+++|.+||++|||||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus 168 ~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d~~~L~~Al~~i~~v~~~iNe 224 (402)
T 2dfk_A 168 MIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINE 224 (402)
T ss_dssp CCSCCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhHHHHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999983
No 8
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.78 E-value=2.1e-19 Score=115.98 Aligned_cols=57 Identities=30% Similarity=0.355 Sum_probs=54.6
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+.+++|.+||++|||||+||+|||++|+|+|+++|+|+..+++|++.+++++..||.
T Consensus 245 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iNe 301 (466)
T 2pz1_A 245 MIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINE 301 (466)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHhhhHHHHhhhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999983
No 9
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=114.83 Aligned_cols=57 Identities=30% Similarity=0.377 Sum_probs=54.9
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
|++++|.+||++|||||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus 195 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~v~~~iN~ 251 (418)
T 3t06_A 195 CRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE 251 (418)
T ss_dssp GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999983
No 10
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.77 E-value=5.1e-19 Score=111.42 Aligned_cols=56 Identities=38% Similarity=0.446 Sum_probs=52.9
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+++++|.+||++|||||+||+|||++++|+|+ +|+|+..+++|++.+++++..||.
T Consensus 135 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~-~~~d~~~L~~Al~~i~~v~~~iN~ 190 (353)
T 1kz7_A 135 DHKLSLDSYLLKPVQRITKYQLLLKEMLKYSK-HCEGAEDLQEALSSILGILKAVND 190 (353)
T ss_dssp TCSSCHHHHHTHHHHHHHHHHHHHHHHHHTCT-TSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998 589999999999999999999984
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=3.4e-19 Score=113.89 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=51.8
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+++++|.+||++|||||+||+|||++|+|+|+++|+|+..+++|++.+++++..||.
T Consensus 157 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iN~ 213 (434)
T 3mpx_A 157 GGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRAND 213 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHhhhHHhhhHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999983
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.76 E-value=3.4e-19 Score=113.51 Aligned_cols=56 Identities=32% Similarity=0.348 Sum_probs=53.5
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+++++|.+||++|||||+||+|||++|+|+| ++|+|+..+++|++.+++++..||+
T Consensus 148 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t-~~~~d~~~l~~Al~~i~~v~~~iNe 203 (406)
T 2vrw_B 148 NGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRLALDAMRDLAQCVNE 203 (406)
T ss_dssp TTSCCHHHHTTHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHhhhHHHHHhhHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999 8999999999999999999999983
No 13
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.75 E-value=6.8e-19 Score=110.79 Aligned_cols=56 Identities=30% Similarity=0.380 Sum_probs=53.3
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
|++++|.+||++||||++||++||++++|+|++ |+|+..+++|++.+++++..||+
T Consensus 160 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~-~~d~~~l~~A~~~i~~v~~~in~ 215 (377)
T 3p6a_A 160 CRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQ 215 (377)
T ss_dssp GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhhhHHHHHHHHHhhCCC-cccHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999986 89999999999999999999983
No 14
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.75 E-value=7.2e-19 Score=111.29 Aligned_cols=56 Identities=30% Similarity=0.382 Sum_probs=53.1
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
|++++|.+||++|||||+||+|||++|+|+|+++ +|+..+++|++.+++++..||.
T Consensus 158 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~-~d~~~l~~Al~~i~~v~~~iN~ 213 (385)
T 1txd_A 158 CRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWP-TEREKVKKAADHCRQILNFVNQ 213 (385)
T ss_dssp GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCChHHHhhhHHhHhhhHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999875 8999999999999999999984
No 15
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=99.75 E-value=3.2e-19 Score=111.80 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=50.8
Q ss_pred ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540 3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57 (58)
Q Consensus 3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 57 (58)
++++|.+||++|||||+||||||++++|+|| +|+|+..+++|++.+++++..||
T Consensus 138 ~~~~L~~~Li~PvQRi~rY~LLL~~llk~t~-~~~d~~~L~~Al~~~~~v~~~in 191 (354)
T 1dbh_A 138 VQYVLPRLLLAPVYHCLHYFELLKQLEEKSE-DQEDKECLKQAITALLNVQSGME 191 (354)
T ss_dssp HHHTHHHHTTHHHHHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhchHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999997 59999999999999999999876
No 16
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.73 E-value=1.8e-19 Score=116.39 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=0.0
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
|++++|.+||++|+|||+||++||++++|+|+++|+|+..+++|++.+++++.+||+
T Consensus 156 ~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~in~ 212 (510)
T 3jzy_A 156 CKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNE 212 (510)
T ss_dssp ---------------------------------------------------------
T ss_pred ccCCCHHHHhChhhhhhcCcHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999999984
No 17
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.73 E-value=3.3e-18 Score=105.93 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=49.2
Q ss_pred ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
.+++|.+||++|||||+||||||++++|+||++|+| +++|++.+++++.++|.
T Consensus 131 ~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~h~~---l~~Al~~~~~v~~~~N~ 183 (311)
T 1nty_A 131 LANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRAND 183 (311)
T ss_dssp CSSCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTCTT---HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCcHH---HHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999998876 78999999999999983
No 18
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.71 E-value=5.1e-18 Score=111.95 Aligned_cols=56 Identities=30% Similarity=0.380 Sum_probs=53.3
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
|++++|.+||++|||||+||+|||++|+|+|++ |+|+..+++|+..+++++.+||.
T Consensus 313 ~~~l~L~s~Li~PvQRi~rY~LLL~~LlK~T~~-~~d~~~L~~Al~~i~~v~~~iNe 368 (536)
T 3odw_A 313 CRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQ 368 (536)
T ss_dssp GTTCCHHHHTTHHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999976 89999999999999999999983
No 19
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.71 E-value=6.7e-18 Score=111.88 Aligned_cols=56 Identities=30% Similarity=0.323 Sum_probs=53.2
Q ss_pred CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+++++|.+||++|||||+||+|||++++|+|+ +|+|+..+++|++.+++++..||+
T Consensus 320 ~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~T~-~~~d~~~L~~Al~~i~~v~~~iNe 375 (587)
T 3ky9_A 320 NGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVNE 375 (587)
T ss_dssp SSSCCHHHHHHHHHHHHTTHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHhHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999997 699999999999999999999983
No 20
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.60 E-value=1.9e-16 Score=110.51 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=51.0
Q ss_pred ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540 3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57 (58)
Q Consensus 3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 57 (58)
++++|.+||++|||||+||+|||++++|+|+ +|+|+..+++|++.+++++..||
T Consensus 335 ~~l~L~s~LikPvQRI~rY~LLL~~LlK~Tp-~~~D~~~L~~Al~~i~~v~~~VN 388 (1049)
T 3ksy_A 335 VQYVLPRLLLAPVYHCLHYFELLKQLEEKSE-DQEDKECLKQAITALLNVQSGME 388 (1049)
T ss_dssp HHHTHHHHTTHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999996 56999999999999999999988
No 21
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=95.14 E-value=0.0001 Score=43.10 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=26.4
Q ss_pred hCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 31 VTPDHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 31 ~t~~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
||+++|+|+.++++|++.+++++.+||+
T Consensus 2 ~T~~~~~e~~~L~~Al~~ik~i~~~VNe 29 (185)
T 2lg1_A 2 MTKDNEVEQEDLAQSLSLVKDVIGAVDS 29 (185)
T ss_dssp CSSTTTSCCTTSCCSSSSSTTTSGGGGG
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHhH
Confidence 7899999999999999999999999994
No 22
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=86.19 E-value=1.5 Score=28.05 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=38.0
Q ss_pred CCccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHH
Q psy2540 1 MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQH 47 (58)
Q Consensus 1 ~~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~ 47 (58)
|.++++.-..|+.|--|+-.|+--..+.+|-|..++.+-..++-...
T Consensus 315 mtkkmsvlqmlvypyfrvrtyqayvddfikitkkdsqevkelevvhs 361 (518)
T 4gou_A 315 MTKKMSVLQMLVYPYFRVRTYQAYVDDFIKITKKDSQEVKELEVVHS 361 (518)
T ss_dssp HHTSCCHHHHHHGGGGHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhheehhHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 44677778889999999999999999999999888876665554433
No 23
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=47.29 E-value=20 Score=20.49 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=23.5
Q ss_pred hCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540 31 VTPDHHTGKDLLIEAQHNIQLHLEHIN 57 (58)
Q Consensus 31 ~t~~~~~d~~~l~~a~~~~~~~~~~iN 57 (58)
||+.++-+.+++.++.+.+..++..++
T Consensus 322 Ht~~E~v~i~dl~~~~~ll~~~i~~L~ 348 (354)
T 2wzn_A 322 HSQVELADARDVDNTIKLAKALLEELK 348 (354)
T ss_dssp TSTTCEEEHHHHHHHHHHHHHHHHHCC
T ss_pred CcccEEEEHHHHHHHHHHHHHHHHhCc
Confidence 777778899999999999999998765
No 24
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=33.55 E-value=47 Score=20.27 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=21.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhc
Q psy2540 34 DHHTGKDLLIEAQHNIQLHLEHIN 57 (58)
Q Consensus 34 ~~~~d~~~l~~a~~~~~~~~~~iN 57 (58)
+++|+|..+.+|...+.++-..||
T Consensus 12 e~~~eY~~Ivqa~~lld~idkein 35 (260)
T 2ozb_B 12 EAAPEYRVIVDANNLTVEIENELN 35 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999888887
No 25
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=33.26 E-value=34 Score=20.47 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=19.1
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540 27 RLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57 (58)
Q Consensus 27 ~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 57 (58)
.|+-..-+.-|+-..+++|++.++.++..++
T Consensus 15 ~lisaird~APGQ~eCd~AI~~in~~i~dLd 45 (216)
T 4f7g_B 15 TENLYFQSKAPGQLECETAIAALNSCLRDLD 45 (216)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 3444444556888999999999999888775
No 26
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=27.52 E-value=41 Score=13.74 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=23.0
Q ss_pred hhhhhhhhhhhchHHHHHHHHhh-----CCC--CCccHHHHHHHHHHHHHHH
Q psy2540 9 VSITVPVQRVTKYPLLLARLYKV-----TPD--HHTGKDLLIEAQHNIQLHL 53 (58)
Q Consensus 9 ~~L~~P~QRi~rY~LLL~~l~k~-----t~~--~~~d~~~l~~a~~~~~~~~ 53 (58)
..+.+|+.++.+.-- .+.+- .+. ...|...+..++..|.+-+
T Consensus 3 ~~i~~pl~~l~~~~~---~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l 51 (56)
T 2asw_A 3 STITRPIIELSNTAD---KIAEGNLEAEVPHQNRADEIGILAKSIERLRRSL 51 (56)
T ss_dssp HHHHHHHHHHHHHHH---HHHTTCTTCCCTTTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHhCCCCCCcCCCCCCCchHHHHHHHHHHHHHHH
Confidence 356788887776543 33321 111 2346667777776665443
No 27
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=26.50 E-value=60 Score=18.03 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=20.7
Q ss_pred hchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHH
Q psy2540 19 TKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLH 52 (58)
Q Consensus 19 ~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~ 52 (58)
..|..++.++..-......-...+..+...+.+.
T Consensus 13 ~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~ 46 (160)
T 3ksh_A 13 TNYTLLKKQAASLIEDEHHMIAILSNMSALLNDN 46 (160)
T ss_dssp CCHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4699999999887654332234455555555443
No 28
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=25.70 E-value=81 Score=16.86 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=18.6
Q ss_pred CccHHHHHHHHHHHHHHHHHhcC
Q psy2540 36 HTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 36 ~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
..+.+.+++|++.+++.+...|.
T Consensus 34 ~~~~eel~~av~~lN~~~~~~n~ 56 (117)
T 2hc5_A 34 QVSYTNLAEMVGEMNKLLEPSQV 56 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCC
Confidence 35778999999999998877663
No 29
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.11 E-value=84 Score=16.77 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHHHHHh
Q psy2540 37 TGKDLLIEAQHNIQLHLEHI 56 (58)
Q Consensus 37 ~d~~~l~~a~~~~~~~~~~i 56 (58)
++.+.+++|.+.+++++..+
T Consensus 81 ~~~e~i~~A~~~Ie~Ll~~v 100 (119)
T 2yqr_A 81 PKPEGLAAAKKLCENLLQTV 100 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhch
Confidence 57888999999999988765
No 30
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=23.67 E-value=49 Score=13.37 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=13.6
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhc
Q psy2540 34 DHHTGKDLLIEAQHNIQLHLEHIN 57 (58)
Q Consensus 34 ~~~~d~~~l~~a~~~~~~~~~~iN 57 (58)
++..-|....+.-..++.++..||
T Consensus 7 ennniykaakdvttslskvlknin 30 (30)
T 2gww_B 7 ENNNIYKAAKDVTTSLSKVLKNIN 30 (30)
T ss_dssp --CHHHHHHHHHHHHHHHHHGGGC
T ss_pred ccchHHHHHHHHHHHHHHHHHccC
Confidence 334445555666666677776665
No 31
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=23.60 E-value=94 Score=17.45 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=20.6
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540 34 DHHTGKDLLIEAQHNIQLHLEHINS 58 (58)
Q Consensus 34 ~~~~d~~~l~~a~~~~~~~~~~iN~ 58 (58)
+.||.+..+......+..+...|++
T Consensus 28 ~~~p~~~aI~~V~~eVd~L~~eV~~ 52 (142)
T 3a8y_C 28 EEHPSHKAVWNVLGNLSEIQGEVLS 52 (142)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999998888763
No 32
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=23.57 E-value=88 Score=17.53 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=18.0
Q ss_pred CCCCCcc--HHHHHHHHHHHHHHHHHhc
Q psy2540 32 TPDHHTG--KDLLIEAQHNIQLHLEHIN 57 (58)
Q Consensus 32 t~~~~~d--~~~l~~a~~~~~~~~~~iN 57 (58)
+|+.+|+ +..+..+...+..++..||
T Consensus 38 ~P~edp~~Ll~El~~~~~~L~~Li~~IN 65 (154)
T 3kdq_A 38 QPAENPHEILTELEELTTRINDLVRRIN 65 (154)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 4567788888888888887
No 33
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=22.18 E-value=29 Score=20.36 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=18.3
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540 24 LLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57 (58)
Q Consensus 24 LL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 57 (58)
++...+..-|..-|....+.+.+..++.....+|
T Consensus 273 li~~~l~~~p~~RPs~~~il~~l~~l~~~~pk~n 306 (307)
T 3lb7_A 273 LVADCVKKVKEERPLFPQILSSIELLQHSLPKIN 306 (307)
T ss_dssp HHHHHSCSSSTTSCCHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHhhCChhhCcCHHHHHHHHHHHHhhccccC
Confidence 4444444444555677777777666665554444
No 34
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=21.67 E-value=1e+02 Score=17.93 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=20.2
Q ss_pred hCCCCCccHHHHHHHHHHHHHHHHH
Q psy2540 31 VTPDHHTGKDLLIEAQHNIQLHLEH 55 (58)
Q Consensus 31 ~t~~~~~d~~~l~~a~~~~~~~~~~ 55 (58)
|++.+.-+.+++.++.+.+.+++..
T Consensus 241 Hs~~E~v~~~d~~~~~~vl~~~l~~ 265 (268)
T 3t68_A 241 HKVNECVRIADLEKLTDMYQKTLNH 265 (268)
T ss_dssp TSTTCEEEHHHHHHHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHHHHHHH
Confidence 7777778889999998888877754
No 35
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=21.26 E-value=88 Score=18.73 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=29.3
Q ss_pred hhhhhhchHHHHHHHHhhCCCCCccHHHHH----HHHHHHHHHHHHhc
Q psy2540 14 PVQRVTKYPLLLARLYKVTPDHHTGKDLLI----EAQHNIQLHLEHIN 57 (58)
Q Consensus 14 P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~----~a~~~~~~~~~~iN 57 (58)
.+|++.+-.--|+.++..-|.+=.|+...- +-.++|+.+++.+|
T Consensus 92 ~fqel~~rA~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDAvn 139 (213)
T 3ajm_A 92 EFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTVN 139 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888776666766543 33444555666555
No 36
>1zzp_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; four helix bundle, nuclear export signal, transferase; NMR {Homo sapiens}
Probab=20.83 E-value=76 Score=17.49 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=25.0
Q ss_pred hhchHHHHHHHHhhC------CCCCccHHHHHHHHHHHHHHHHHh
Q psy2540 18 VTKYPLLLARLYKVT------PDHHTGKDLLIEAQHNIQLHLEHI 56 (58)
Q Consensus 18 i~rY~LLL~~l~k~t------~~~~~d~~~l~~a~~~~~~~~~~i 56 (58)
|.|-.+=|+++.-.. |...+|++.|--.+++|+++++..
T Consensus 85 v~klE~sl~elq~~~a~~gg~p~a~~~~s~LlssVkEISDvVQR~ 129 (130)
T 1zzp_A 85 INKLENNLRELQICPATAGSGPAATQDFSKLLSSVKEISDIVQRL 129 (130)
T ss_dssp HHHHHHHHHHHSCCSSSSCSSSCCCCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHhhcCHHHHhcCccccCCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555432 234568888888888888887653
No 37
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.67 E-value=1.1e+02 Score=16.36 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=12.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhc
Q psy2540 34 DHHTGKDLLIEAQHNIQLHLEHIN 57 (58)
Q Consensus 34 ~~~~d~~~l~~a~~~~~~~~~~iN 57 (58)
+.||....+.+....+..+...|+
T Consensus 24 ~~~p~~~~I~~I~~eV~~L~~qV~ 47 (111)
T 1uk5_A 24 PKHPGVLKVEAILEKVQGLEQAVD 47 (111)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443
No 38
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=20.63 E-value=76 Score=17.86 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=22.5
Q ss_pred hhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHH
Q psy2540 17 RVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHL 53 (58)
Q Consensus 17 Ri~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~ 53 (58)
+-..|..++.++..-......-...+..+...+.+..
T Consensus 12 ~~~~~~~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l 48 (171)
T 3rfb_A 12 KQSRYQMLNEELSFLLEGETNVLANLSNASALIKSRF 48 (171)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHc
Confidence 4567999988888866443323445555555555443
Done!