RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2540
(58 letters)
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 45.8 bits (108), Expect = 2e-08
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
++ P R+ KYP LL L + D+HT + + ++ +
Sbjct: 145 LSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQ 191
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 41.3 bits (96), Expect = 7e-07
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
+ P+QRV KYPLLL L+ +T L A + HIN
Sbjct: 153 LIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHIN 199
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 41.3 bits (96), Expect = 8e-07
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
+ PVQ++ KYPL LA L K T H+ + A ++ + IN
Sbjct: 150 LLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQIN 196
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 41.3 bits (96), Expect = 8e-07
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
I +QR+TKYPLLL + K T + + L A+ + L+++N
Sbjct: 162 IISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE 209
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 40.9 bits (95), Expect = 1e-06
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
+ PVQR+TKY LLL + K + G + L EA +I L+ +N
Sbjct: 142 LLKPVQRITKYQLLLKEMLKYSKHCE-GAEDLQEALSSILGILKAVN 187
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 39.7 bits (92), Expect = 2e-06
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
I P+QRVT+YPL++ + + TP++H L A + +N
Sbjct: 147 ILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVN 193
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 37.8 bits (87), Expect = 1e-05
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
+ PV Y LL +L + + D K+ L +A + +
Sbjct: 146 LLAPVYHCLHYFELLKQLEEKSEDQE-DKECLKQAITALLNVQSGMEK 192
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 37.9 bits (87), Expect = 1e-05
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
I +QR+TKYPLLL + K T T ++ + +A + + L +N
Sbjct: 165 IPTQMQRLTKYPLLLDNIAKYTEW-PTEREKVKKAADHCRQILNFVNQ 211
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 37.4 bits (86), Expect = 2e-05
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
+ PVQR+TKY LLL L + + + + + N
Sbjct: 133 LIKPVQRITKYQLLLKELLTCCEEGK---GEIKDGLEVMLSVPKRAN 176
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 37.4 bits (86), Expect = 2e-05
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
+ VP+QRV KY LLL L K T D ++ L A ++ + +N
Sbjct: 159 LMVPMQRVLKYHLLLQELVKHTQDATEKEN-LRLALDAMRDLAQCVN 204
>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor
a3(2) [TaxId: 100226]}
Length = 75
Score = 22.5 bits (48), Expect = 2.6
Identities = 4/37 (10%), Positives = 11/37 (29%)
Query: 21 YPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
+ + ++T + +DL+ E
Sbjct: 17 LDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFR 53
>d1ljra1 a.45.1.1 (A:80-244) Class theta GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 165
Score = 21.7 bits (45), Expect = 7.2
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 32 TPDHHTGKDLLIEAQHNIQLHLEHIN 57
TPDH DL A+ + L
Sbjct: 1 TPDHWYPSDLQARARVHEYLGWHADC 26
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
cereus [TaxId: 1396]}
Length = 370
Score = 22.0 bits (46), Expect = 7.3
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 18 VTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
+ +PL+ L + D GK + +++I ++ H N
Sbjct: 63 IAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTN 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.387
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 200,439
Number of extensions: 6342
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 13
Length of query: 58
Length of database: 2,407,596
Length adjustment: 28
Effective length of query: 30
Effective length of database: 2,023,156
Effective search space: 60694680
Effective search space used: 60694680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)