BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2547
(1807 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 614 bits (1583), Expect = e-175, Method: Compositional matrix adjust.
Identities = 299/524 (57%), Positives = 373/524 (71%), Gaps = 9/524 (1%)
Query: 27 QLPQPISSCERKSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLEDKKKCFTCNS 86
Q P+ C SCYPATG+LLIGR KL +STCGLH +CIVS L++ KKCF C+S
Sbjct: 5 QEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDS 64
Query: 87 -SPRFDNNPAFSHKIHNIVYATVPRTKTISWWQSENGVENVTIQLDMEAEFHFTHLIIYF 145
P + SH I N+V P I WWQSENGVENVTIQLD+EAEFHFTHLI+ F
Sbjct: 65 RDPYHETLNPDSHLIENVVTTFAPNRLKI-WWQSENGVENVTIQLDLEAEFHFTHLIMTF 123
Query: 146 KTFRPAAMLIERSHDFGKTWQVYRYFAADCAKSFPGIPRDGLRKLTDVYCESRYSSNNPS 205
KTFRPAAMLIERS DFGK W VYRYFA DC SFPGI ++K+ D+ C+SRYS PS
Sbjct: 124 KTFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMKKVDDIICDSRYSDIEPS 183
Query: 206 SGGEVILRVLPPSLHHSNIDPYSSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQIQEKY 265
+ GEVI R L P+ DPYS +QNL+K+TNLRI F KLHTLGD+LLD+R +I+EKY
Sbjct: 184 TEGEVIFRALDPAFKIE--DPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIREKY 241
Query: 266 YYAITQMIVRGSCSCYGHASRCLPISEADTKPD-MVHGRCECTHNTQGLNCEKCIDFYND 324
YYA+ M+VRG+C CYGHAS C P+ + + + MVHG C C HNT+GLNCE C+DFY+D
Sbjct: 242 YYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHD 301
Query: 325 LPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCK 384
LPW+PA G +NACK+CNCN HS+ CHFD AV+ +TG +SGGVCD+C+HNT GRNCE+CK
Sbjct: 302 LPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCK 361
Query: 385 QYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDV--LVSGKCHCKPNVGGRRCD 442
++++ P ++ DP +C C CDP GS + GICD YTD L++G+C CK +V G RCD
Sbjct: 362 PFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCD 421
Query: 443 MCKDGFWNFNETNPNGCEPCTCNIQGTI-NSQGCNKDTGDCTCKRNVEGRDCNQCLPHFW 501
+CK+GF++ + +P GC+ C CN GTI C+ +TG C CKR V G+ C+QCLP W
Sbjct: 422 VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHW 481
Query: 502 GLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCS 545
GLS + GC+PCDCD G + +N+C SGQC C PH GR C+
Sbjct: 482 GLSNDLD-GCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 125/283 (44%), Gaps = 48/283 (16%)
Query: 867 CICNGHADLCDSKTGT-----------CISCRNSTDGENCERCINGYYGDPRLGIDI--- 912
C C GHA C G C+ CR++T G NCE C++ Y+ P +
Sbjct: 254 CFCYGHASECAPVDGVNEEVEGMVHGHCM-CRHNTKGLNCELCMDFYHDLPWRPAEGRNS 312
Query: 913 -PCRPCPCPGTVESGLSYADTCQLDPR--------SQDVICECKEGYRGTRCDGCLDNYF 963
C+ C C ++ +C D S V C+ G C+ C YF
Sbjct: 313 NACKKCNCN-------EHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYF 365
Query: 964 GNPQER---GGSCEPCDCSNNTDLALPGNCDTLT--------GKCLQCRYDTEGDHCQVC 1012
+P+ CEPC C + G CD T G+C +C+ EG+ C VC
Sbjct: 366 QHPERDIRDPNLCEPCTC-DPAGSENGGICDGYTDFSVGLIAGQC-RCKLHVEGERCDVC 423
Query: 1013 KAGFFGNALEQ--NCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKI 1070
K GF+ + E C C CN LG PCD TG C C V G CD+CL HW +
Sbjct: 424 KEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGL 483
Query: 1071 ASGT-GCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQ 1112
++ GC PCDCD G+++ C+E +GQC C GRQC++
Sbjct: 484 SNDLDGCRPCDCDLGGALN-NSCSEDSGQCSCLPHMIGRQCNE 525
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 30/245 (12%)
Query: 944 CECKEGYRGTRCDGCLDNYFGNPQE-----RGGSCEPCDCSNNT-----DLALPGNCDTL 993
C C+ +G C+ C+D Y P +C+ C+C+ ++ D+A+ +
Sbjct: 281 CMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNV 340
Query: 994 TGK-CLQCRYDTEGDHCQVCKAGFFGNALEQN-----CTECTCNILGIDHSKGPCDRTT- 1046
+G C C+++T G +C+ CK +F + C CTC+ G ++ G CD T
Sbjct: 341 SGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENG-GICDGYTD 399
Query: 1047 -------GQCPCLPNVIGVSCDRCLKNHWKIAS--GTGCEPCDCDPIGSV-DVTECNEYT 1096
GQC C +V G CD C + + +++ GC+ C C+P+G++ C+ T
Sbjct: 400 FSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSET 459
Query: 1097 GQCQCKSGFGGRQCDQCQTNFWGNPNV--ECFPCDCDPSGSATSQCHQNNGTCVCHQGIG 1154
G C CK G++CDQC WG N C PCDCD G+ + C +++G C C +
Sbjct: 460 GYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMI 519
Query: 1155 GVRCD 1159
G +C+
Sbjct: 520 GRQCN 524
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 753 EACKKQHYSIGMYVHHGANECDCDPTGST--SKYCDQLGGNCVCKPNVVGRRCDRCAPGT 810
+ CK+ Y + +G C C+P G+ CD G C CK V G+RCD+C P
Sbjct: 421 DVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQH 480
Query: 811 YGFG--PEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQ 853
+G +GC+ CDC+ GAL+N C SGQC C GR+C++
Sbjct: 481 WGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 773 CDCDPTGS-TSKYCD--------QLGGNCVCKPNVVGRRCDRCAPGTYGFG---PEGCKA 820
C CDP GS CD + G C CK +V G RCD C G Y P GCK+
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKS 440
Query: 821 CDCNHVGAL--DNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPT----CQRCICNGHAD 874
C CN +G + N CD +G C C+ G+ CDQC P +W C+ C C+
Sbjct: 441 CACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGA 500
Query: 875 L---CDSKTGTCISCRNSTDGENC 895
L C +G C SC G C
Sbjct: 501 LNNSCSEDSGQC-SCLPHMIGRQC 523
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 116/288 (40%), Gaps = 60/288 (20%)
Query: 756 KKQHYSIGMYVHHGANEC-----DCDPT-GSTSKYCDQLGGNCVCKPNVVGRRCDRCAPG 809
+K +Y++ V G C +C P G + + G+C+C+ N G C+ C
Sbjct: 239 EKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDF 298
Query: 810 TY--------GFGPEGCKACDCNH--------VGALDNICDVVSGQC-KCRAQTYGRECD 852
+ G CK C+CN + +V G C C+ T GR C+
Sbjct: 299 YHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCE 358
Query: 853 QCSPGYWNYP--------TCQRC-----------ICNGHADLCDSKTGTCISCRNSTDGE 893
QC P Y+ +P C+ C IC+G+ D C+ +GE
Sbjct: 359 QCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGE 418
Query: 894 NCERCINGYYGDPRLGIDIP--CRPCPC--PGTVESGLSYADTCQLDPRSQDVICECKEG 949
C+ C G+Y L + P C+ C C GT+ G + C S+ C CK
Sbjct: 419 RCDVCKEGFYD---LSAEDPYGCKSCACNPLGTIPGG----NPCD----SETGYCYCKRL 467
Query: 950 YRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKC 997
G RCD CL ++G + G C PCDC + AL +C +G+C
Sbjct: 468 VTGQRCDQCLPQHWGLSNDLDG-CRPCDC--DLGGALNNSCSEDSGQC 512
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 48/225 (21%)
Query: 992 TLTGKCLQCRYDTEGDHCQVCKAGF----FGNALEQN---CTECTCN------------- 1031
+ G C+ CR++T+G +C++C + + A +N C +C CN
Sbjct: 276 MVHGHCM-CRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVF 334
Query: 1032 ILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWK-----IASGTGCEPCDCDPIGS 1086
+ + S G CD C N +G +C++C +++ I CEPC CDP GS
Sbjct: 335 LATGNVSGGVCDN------CQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGS 388
Query: 1087 VDVTECNEYT--------GQCQCKSGFGGRQCDQCQTNFW---GNPNVECFPCDCDPSGS 1135
+ C+ YT GQC+CK G +CD C+ F+ C C C+P G+
Sbjct: 389 ENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGT 448
Query: 1136 --ATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPD---CSPC 1175
+ C G C C + + G RCD C + G + D C PC
Sbjct: 449 IPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPC 493
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 33/157 (21%)
Query: 425 LVSGKCHCKPNVGGRRCDMCKDGF----WNFNE-TNPNGCEPCTCNIQGTINSQGCNKD- 478
+V G C C+ N G C++C D + W E N N C+ C CN S C+ D
Sbjct: 276 MVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEH----SSSCHFDM 331
Query: 479 -----TGDCT------CKRNVEGRDCNQCLPHFWGLSESEEYG---CKPCDCDPGASYDN 524
TG+ + C+ N GR+C QC P ++ E + C+PC CDP S +
Sbjct: 332 AVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENG 391
Query: 525 N-CD--------VISGQCKCKPHASGRTCSTPEQSYY 552
CD +I+GQC+CK H G C ++ +Y
Sbjct: 392 GICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFY 428
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 171/329 (51%), Gaps = 33/329 (10%)
Query: 95 AFSHKIHNIVYATVPRTKTISWWQS---ENGVE--NVTIQLDMEAEFHFTHLIIYFK-TF 148
A S+K H + A T WWQS G+E V + LD+ FH +++I F +
Sbjct: 75 ANSNKAHPVSNAI---DGTERWWQSPPLSRGLEYNEVNVTLDLGQVFHVAYVLIKFANSP 131
Query: 149 RPAAMLIERSHDFGKTWQVYRYFAA---DCAKSFPGIPRDGLRKLTDVYCESRYSSNNPS 205
RP ++ERS DFG T+Q +++FA+ DC + F + + + DV C + YS P
Sbjct: 132 RPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLERITQDDDVICTTEYSRIVPL 191
Query: 206 SGGEVILRVL---PPSLHHSNIDPYSSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQ-- 260
GE+++ ++ P +L+ S YS +++ K TN+R+ F + +TL L+ +
Sbjct: 192 ENGEIVVSLVNGRPGALNFS----YSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDP 247
Query: 261 -IQEKYYYAITQMIVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCI 319
+ +YYY+I + + G C C+GHA C +A D +C C HNT G +C++C
Sbjct: 248 TVTRRYYYSIKDISIGGRCVCHGHADVC----DAKDPLDPFRLQCACQHNTCGGSCDRCC 303
Query: 320 DFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFD------EAVYNSTGRI-SGGVCDSCE 372
+N PWKPA N C+ CNC+ H+ C++D EA N GGVC C+
Sbjct: 304 PGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQ 363
Query: 373 HNTEGRNCERCKQYFYKDPNKEFSDPEVC 401
H+T G NCERC F++ P++ P VC
Sbjct: 364 HHTTGINCERCLPGFFRAPDQPLDSPHVC 392
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 30/113 (26%)
Query: 834 DVVSGQCKCRAQTYGRECDQCSPGY----WNYPT------CQRCICNGHADLC--DSKT- 880
D QC C+ T G CD+C PG+ W T CQ C C+GHA C D +
Sbjct: 282 DPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVD 341
Query: 881 ---------------GTCISCRNSTDGENCERCINGYYGDPRLGIDIP--CRP 916
G C+ C++ T G NCERC+ G++ P +D P CRP
Sbjct: 342 RREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRP 394
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 31/127 (24%)
Query: 866 RCICNGHADLCDSKTG-----TCISCRNSTDGENCERCINGYYGDPRLGIDI----PCRP 916
RC+C+GHAD+CD+K +C+++T G +C+RC G+ P C+
Sbjct: 265 RCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQS 324
Query: 917 CPCPGTVESGLSYADTCQLDP--------RSQD-------VICECKEGYRGTRCDGCLDN 961
C C G +A C DP ++QD V +C+ G C+ CL
Sbjct: 325 CNCHG-------HAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPG 377
Query: 962 YFGNPQE 968
+F P +
Sbjct: 378 FFRAPDQ 384
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 20/293 (6%)
Query: 115 SWWQSEN---GVE---NVTIQLDMEAEFHFTHLIIYFKTFRPAAMLIERSHDFGKTWQVY 168
+WWQS+ GV+ ++ + L + F T++ + F T RP + I + W Y
Sbjct: 85 TWWQSQTMLAGVQYPNSINLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTREDGPWIPY 144
Query: 169 RYFAADCAKSFPGIPRDGLRKLTD---VYCESRYSSNNPSSGGEVILRVLPPSLHHSNID 225
+Y++ C ++ R +R D C +S +P +GG V L N D
Sbjct: 145 QYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFD 204
Query: 226 PYSSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQIQEKYYYAITQMIVRGSCSCYGHAS 285
S +Q + T++R+ +L+T GD++ + ++ + YYYAI+ V G C C GHAS
Sbjct: 205 N-SPVLQEWVTATDIRVTLNRLNTFGDEVFN-EPKVLKSYYYAISDFAVGGRCKCNGHAS 262
Query: 286 RCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNN 345
C+ K + C C HNT G++CEKC+ F+ND PW+ A + C C+CN
Sbjct: 263 ECV-------KNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNG 315
Query: 346 HSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDP 398
S +C+FD +Y STG GG C +C NT+G CERC++ F++ N E P
Sbjct: 316 RSQECYFDPELYRSTGH--GGHCTNCRDNTDGAKCERCRENFFRLGNTEACSP 366
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 22/97 (22%)
Query: 839 QCKCRAQTYGRECDQCSPGY----WNYPT------CQRCICNGHADLC---------DSK 879
C C+ TYG +C++C P + W T C C CNG + C
Sbjct: 273 MCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGH 332
Query: 880 TGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRP 916
G C +CR++TDG CERC ++ RLG C P
Sbjct: 333 GGHCTNCRDNTDGAKCERCRENFF---RLGNTEACSP 366
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 340 QCNCNNHSTKC---HFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFS 396
+C CN H+++C FD+ + N C+HNT G +CE+C +F P + +
Sbjct: 254 RCKCNGHASECVKNEFDKLMCN------------CKHNTYGVDCEKCLPFFNDRPWRRAT 301
Query: 397 DPEV--CLRCDCDPGGSLDDGICDP-YTDDVLVSGKC-HCKPNVGGRRCDMCKDGFWNFN 452
CL CDC+ G + DP G C +C+ N G +C+ C++ F F
Sbjct: 302 AESASECLPCDCN--GRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENF--FR 357
Query: 453 ETNPNGCEP 461
N C P
Sbjct: 358 LGNTEACSP 366
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 942 VICECKEGYRGTRCDGCLDNYFGNPQERGGS-----CEPCDCSNNT-----DLALPGNCD 991
++C CK G C+ CL + P R + C PCDC+ + D L +
Sbjct: 272 LMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTG 331
Query: 992 TLTGKCLQCRYDTEGDHCQVCKAGFF 1017
G C CR +T+G C+ C+ FF
Sbjct: 332 H-GGHCTNCRDNTDGAKCERCRENFF 356
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
Query: 866 RCICNGHADLC--DSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDI----PCRPCPC 919
RC CNGHA C + +C+++T G +CE+C+ + P C PC C
Sbjct: 254 RCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDC 313
Query: 920 PGTVESGLSYADTCQLDPRSQDVI------CECKEGYRGTRCDGCLDNYFGNPQERGGSC 973
G + C DP C++ G +C+ C +N+F R G+
Sbjct: 314 NGRSQE-------CYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFF-----RLGNT 361
Query: 974 EPC 976
E C
Sbjct: 362 EAC 364
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 482 CTCKRNVEGRDCNQCLPHF----WGLSESEEYG-CKPCDCD 517
C CK N G DC +CLP F W + +E C PCDC+
Sbjct: 274 CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCN 314
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 27/145 (18%)
Query: 1001 RYDTEGDHC----QVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVI 1056
R +T GD +V K+ ++ + C CN + K D+ C C N
Sbjct: 224 RLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKL--MCNCKHNTY 281
Query: 1057 GVSCDRCLKNH----WKIA---SGTGCEPCDC---------DPIGSVDVTECNEYTGQC- 1099
GV C++CL W+ A S + C PCDC DP ++ + G C
Sbjct: 282 GVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDP----ELYRSTGHGGHCT 337
Query: 1100 QCKSGFGGRQCDQCQTNFWGNPNVE 1124
C+ G +C++C+ NF+ N E
Sbjct: 338 NCRDNTDGAKCERCRENFFRLGNTE 362
>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex
Length = 164
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 16/171 (9%)
Query: 915 RPCPCPGTVESGLSYADTCQLDPRSQDVIC-ECKEGYRGTRCDGCLDNYFGNPQERGGS- 972
+PCPCPG +C + P++++V+C C G G RC+ C D YFG+P G
Sbjct: 1 QPCPCPG--------GSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPV 52
Query: 973 --CEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQN----CT 1026
C PC C++N D GNC+ LTG+CL+C Y+T G +C CK GFFGN L N C
Sbjct: 53 RLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 112
Query: 1027 ECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCE 1077
C CN G + C+ TGQC CLP+V G C C ++ + SG GCE
Sbjct: 113 ACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 163
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 16/156 (10%)
Query: 408 PGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNG----CEPCT 463
PGGS + P T +V+ + HC G+RC++C DG++ + NG C PC
Sbjct: 6 PGGSSCAIV--PKTKEVVCT---HCPTGTAGKRCELCDDGYFG-DPLGSNGPVRLCRPCQ 59
Query: 464 CNIQGTINSQG-CNKDTGDCT-CKRNVEGRDCNQCLPHFWG--LSESEEYGCKPCDCDPG 519
CN N+ G CN+ TG+C C N G C++C F+G L+ + CK C C+P
Sbjct: 60 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPY 119
Query: 520 ASYD--NNCDVISGQCKCKPHASGRTCSTPEQSYYS 553
+ ++C+ ++GQC+C PH SGR C T + YY+
Sbjct: 120 GTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYN 155
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 974 EPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQN-----CTEC 1028
+PC C + A+ + C C T G C++C G+FG+ L N C C
Sbjct: 1 QPCPCPGGSSCAIVPKTKEVV--CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPC 58
Query: 1029 TCNILGIDHSKGPCDRTTGQC-PCLPNVIGVSCDRC----LKNHWKIASGTGCEPCDCDP 1083
CN ++ G C+R TG+C C+ N G CDRC N C+ C C+P
Sbjct: 59 QCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNP 118
Query: 1084 IGSVDV-TECNEYTGQCQCKSGFGGRQCDQCQTNFW 1118
G+V + CN TGQCQC GR C C ++
Sbjct: 119 YGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYY 154
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 367 VCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDC----DPGGSLDDGICDPYTD 422
VC C T G+ CE C ++ DP +C C C DP G C+ T
Sbjct: 21 VCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAV---GNCNRLTG 77
Query: 423 DVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNG---CEPCTCNIQGTINSQG-CNKD 478
+ L C N G CD CK+GF+ N PN C+ C CN GT+ Q CN
Sbjct: 78 ECL-----KCIYNTAGFYCDRCKEGFFG-NPLAPNPADKCKACACNPYGTVQQQSSCNPV 131
Query: 479 TGDCTCKRNVEGRDCNQCLPHFWGLSESE 507
TG C C +V GRDC C P ++ L +
Sbjct: 132 TGQCQCLPHVSGRDCGTCDPGYYNLQSGQ 160
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 306 CTH---NTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGR 362
CTH T G CE C D Y P C+ C CN++ D + R
Sbjct: 22 CTHCPTGTAGKRCELCDDGYFGDPL--GSNGPVRLCRPCQCNDN-----IDPNAVGNCNR 74
Query: 363 ISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSL-DDGICDPYT 421
++G C C +NT G C+RCK+ F+ +P + + C C C+P G++ C+P
Sbjct: 75 LTG-ECLKCIYNTAGFYCDRCKEGFFGNPLAP-NPADKCKACACNPYGTVQQQSSCNP-- 130
Query: 422 DDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCE 460
V+G+C C P+V GR C C G++N GCE
Sbjct: 131 ----VTGQCQCLPHVSGRDCGTCDPGYYNLQSG--QGCE 163
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 785 CDQLGGNCV-CKPNVVGRRCDRCAPGTYG--FGP---EGCKACDCNHVGALD--NICDVV 836
C++L G C+ C N G CDRC G +G P + CKAC CN G + + C+ V
Sbjct: 72 CNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPV 131
Query: 837 SGQCKCRAQTYGRECDQCSPGYWNYPTCQRC 867
+GQC+C GR+C C PGY+N + Q C
Sbjct: 132 TGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 162
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 12/153 (7%)
Query: 878 SKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIP---CRPCPCPGTVESGLSYADTCQ 934
+K C C T G+ CE C +GY+GDP LG + P CRPC C ++ + C
Sbjct: 17 TKEVVCTHCPTGTAGKRCELCDDGYFGDP-LGSNGPVRLCRPCQCNDNIDP--NAVGNCN 73
Query: 935 LDPRSQDVICECKEGYRGTRCDGCLDNYFGNP--QERGGSCEPCDCSNNTDLALPGNCDT 992
R +C G CD C + +FGNP C+ C C+ + +C+
Sbjct: 74 ---RLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNP 130
Query: 993 LTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNC 1025
+TG+C QC G C C G++ Q C
Sbjct: 131 VTGQC-QCLPHVSGRDCGTCDPGYYNLQSGQGC 162
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 1076 CEPCDC-DPIGSVDVTECNEYTGQC-QCKSGFGGRQCDQCQTNFWGNPNV-----ECFPC 1128
C PC C D I V CN TG+C +C G CD+C+ F+GNP +C C
Sbjct: 55 CRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKAC 114
Query: 1129 DCDPSGSATSQ--CHQNNGTCVCHQGIGGVRCDTCARGY 1165
C+P G+ Q C+ G C C + G C TC GY
Sbjct: 115 ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGY 153
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 59/136 (43%), Gaps = 32/136 (23%)
Query: 794 CKPNVVGRRCDRCAPGTYG--FGPEG----CKACDCNHVGALDNI-------CDVVSGQC 840
C G+RC+ C G +G G G C+ C CN DNI C+ ++G+C
Sbjct: 25 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCN-----DNIDPNAVGNCNRLTGEC 79
Query: 841 -KCRAQTYGRECDQCSPGYWNYPT-------CQRCICNGHADL-----CDSKTGTCISCR 887
KC T G CD+C G++ P C+ C CN + + C+ TG C C
Sbjct: 80 LKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQC-QCL 138
Query: 888 NSTDGENCERCINGYY 903
G +C C GYY
Sbjct: 139 PHVSGRDCGTCDPGYY 154
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 842 CRAQTYGRECDQCSPGYWNYPT--------CQRCICNGHADL-----CDSKTGTCISCRN 888
C T G+ C+ C GY+ P C+ C CN + D C+ TG C+ C
Sbjct: 25 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIY 84
Query: 889 STDGENCERCINGYYGDP 906
+T G C+RC G++G+P
Sbjct: 85 NTAGFYCDRCKEGFFGNP 102
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 1100 QCKSGFGGRQCDQCQTNFWGNPNVE------CFPCDC----DPSGSATSQCHQNNGTCV- 1148
C +G G++C+ C ++G+P C PC C DP +A C++ G C+
Sbjct: 24 HCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDP--NAVGNCNRLTGECLK 81
Query: 1149 CHQGIGGVRCDTCARGYIG 1167
C G CD C G+ G
Sbjct: 82 CIYNTAGFYCDRCKEGFFG 100
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 773 CDCDPTGSTSKY--CDQLGGNCVCKPNVVGRRCDRCAPGTY 811
C C+P G+ + C+ + G C C P+V GR C C PG Y
Sbjct: 114 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYY 154
>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type
Epidermal Growth Factor-Like (Le) Modules Of Laminin
Gamma1 Chain Harboring The Nidogen Binding Site
Length = 162
Score = 120 bits (300), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 92/168 (54%), Gaps = 16/168 (9%)
Query: 918 PCPGTVESGLSYADTCQLDPRSQDVIC-ECKEGYRGTRCDGCLDNYFGNPQERGGS---C 973
PCPG +C + P++++V+C C G G RC+ C D YFG+P G C
Sbjct: 2 PCPG--------GSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
Query: 974 EPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQN----CTECT 1029
PC C++N D GNC+ LTG+CL+C Y+T G +C CK GFFGN L N C C
Sbjct: 54 RPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACA 113
Query: 1030 CNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCE 1077
CN G + C+ TGQC CLP+V G C C ++ + SG GCE
Sbjct: 114 CNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 16/156 (10%)
Query: 408 PGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNG----CEPCT 463
PGGS + P T +V+ + HC G+RC++C DG++ + NG C PC
Sbjct: 4 PGGSSCAIV--PKTKEVVCT---HCPTGTAGKRCELCDDGYFG-DPLGSNGPVRLCRPCQ 57
Query: 464 CNIQGTINSQG-CNKDTGDCT-CKRNVEGRDCNQCLPHFWG--LSESEEYGCKPCDCDPG 519
CN N+ G CN+ TG+C C N G C++C F+G L+ + CK C C+P
Sbjct: 58 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPY 117
Query: 520 ASYD--NNCDVISGQCKCKPHASGRTCSTPEQSYYS 553
+ ++C+ ++GQC+C PH SGR C T + YY+
Sbjct: 118 GTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYN 153
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 997 CLQCRYDTEGDHCQVCKAGFFGNALEQN-----CTECTCNILGIDHSKGPCDRTTGQC-P 1050
C C T G C++C G+FG+ L N C C CN ++ G C+R TG+C
Sbjct: 20 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLK 79
Query: 1051 CLPNVIGVSCDRC----LKNHWKIASGTGCEPCDCDPIGSVDV-TECNEYTGQCQCKSGF 1105
C+ N G CDRC N C+ C C+P G+V + CN TGQCQC
Sbjct: 80 CIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHV 139
Query: 1106 GGRQCDQCQTNFW 1118
GR C C ++
Sbjct: 140 SGRDCGTCDPGYY 152
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 367 VCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDC----DPGGSLDDGICDPYTD 422
VC C T G+ CE C ++ DP +C C C DP G C+ T
Sbjct: 19 VCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAV---GNCNRLTG 75
Query: 423 DVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNG---CEPCTCNIQGTINSQG-CNKD 478
+ L C N G CD CK+GF+ N PN C+ C CN GT+ Q CN
Sbjct: 76 ECL-----KCIYNTAGFYCDRCKEGFFG-NPLAPNPADKCKACACNPYGTVQQQSSCNPV 129
Query: 479 TGDCTCKRNVEGRDCNQCLPHFWGLSESE 507
TG C C +V GRDC C P ++ L +
Sbjct: 130 TGQCQCLPHVSGRDCGTCDPGYYNLQSGQ 158
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 306 CTH---NTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGR 362
CTH T G CE C D Y P C+ C CN++ D + R
Sbjct: 20 CTHCPTGTAGKRCELCDDGYFGDPL--GSNGPVRLCRPCQCNDN-----IDPNAVGNCNR 72
Query: 363 ISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSL-DDGICDPYT 421
++G C C +NT G C+RCK+ F+ +P + + C C C+P G++ C+P
Sbjct: 73 LTG-ECLKCIYNTAGFYCDRCKEGFFGNPLAP-NPADKCKACACNPYGTVQQQSSCNP-- 128
Query: 422 DDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCE 460
V+G+C C P+V GR C C G++N GCE
Sbjct: 129 ----VTGQCQCLPHVSGRDCGTCDPGYYNLQSG--QGCE 161
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 785 CDQLGGNCV-CKPNVVGRRCDRCAPGTYG--FGP---EGCKACDCNHVGALD--NICDVV 836
C++L G C+ C N G CDRC G +G P + CKAC CN G + + C+ V
Sbjct: 70 CNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPV 129
Query: 837 SGQCKCRAQTYGRECDQCSPGYWNYPTCQRC 867
+GQC+C GR+C C PGY+N + Q C
Sbjct: 130 TGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 160
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 12/153 (7%)
Query: 878 SKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIP---CRPCPCPGTVESGLSYADTCQ 934
+K C C T G+ CE C +GY+GDP LG + P CRPC C ++ + C
Sbjct: 15 TKEVVCTHCPTGTAGKRCELCDDGYFGDP-LGSNGPVRLCRPCQCNDNIDP--NAVGNCN 71
Query: 935 LDPRSQDVICECKEGYRGTRCDGCLDNYFGNP--QERGGSCEPCDCSNNTDLALPGNCDT 992
R +C G CD C + +FGNP C+ C C+ + +C+
Sbjct: 72 ---RLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNP 128
Query: 993 LTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNC 1025
+TG+C QC G C C G++ Q C
Sbjct: 129 VTGQC-QCLPHVSGRDCGTCDPGYYNLQSGQGC 160
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 1076 CEPCDC-DPIGSVDVTECNEYTGQC-QCKSGFGGRQCDQCQTNFWGNPNV-----ECFPC 1128
C PC C D I V CN TG+C +C G CD+C+ F+GNP +C C
Sbjct: 53 CRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKAC 112
Query: 1129 DCDPSGSATSQ--CHQNNGTCVCHQGIGGVRCDTCARGY 1165
C+P G+ Q C+ G C C + G C TC GY
Sbjct: 113 ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGY 151
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 59/136 (43%), Gaps = 32/136 (23%)
Query: 794 CKPNVVGRRCDRCAPGTYG--FGPEG----CKACDCNHVGALDNI-------CDVVSGQC 840
C G+RC+ C G +G G G C+ C CN DNI C+ ++G+C
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCN-----DNIDPNAVGNCNRLTGEC 77
Query: 841 -KCRAQTYGRECDQCSPGYWNYPT-------CQRCICNGHADL-----CDSKTGTCISCR 887
KC T G CD+C G++ P C+ C CN + + C+ TG C C
Sbjct: 78 LKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQC-QCL 136
Query: 888 NSTDGENCERCINGYY 903
G +C C GYY
Sbjct: 137 PHVSGRDCGTCDPGYY 152
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 842 CRAQTYGRECDQCSPGYWNYPT--------CQRCICNGHADL-----CDSKTGTCISCRN 888
C T G+ C+ C GY+ P C+ C CN + D C+ TG C+ C
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIY 82
Query: 889 STDGENCERCINGYYGDP 906
+T G C+RC G++G+P
Sbjct: 83 NTAGFYCDRCKEGFFGNP 100
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 773 CDCDPTGSTSKY--CDQLGGNCVCKPNVVGRRCDRCAPGTY 811
C C+P G+ + C+ + G C C P+V GR C C PG Y
Sbjct: 112 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYY 152
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 34/238 (14%)
Query: 115 SWWQSENGVE-----NVTIQLDMEAEFHFT-HLIIYFKTFRPAAMLIERSHDFGKTWQVY 168
++WQS E V I L T +++I F++ RP M++E+S D+G+TWQ Y
Sbjct: 116 TFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPY 175
Query: 169 RYFAADCAKSFPGIPRD----GLRKLTDVYCESRYSSNNPSSGGEVILRV-------LPP 217
+Y+A DC +F P+ + ++ C YS+ ++ + + P
Sbjct: 176 QYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGP 235
Query: 218 SLH-----HSNIDPYSSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQIQEKYYYAITQM 272
L + +D + +++ +T+LRI + +G+ +D +Y+YAI+ +
Sbjct: 236 RLRNMASLYGQLDT-TKKLRDFFTVTDLRIRLLR-PAVGEIFVDELH--LARYFYAISDI 291
Query: 273 IVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPA 330
VRG C C HA+ C+ + T CEC HNT G +C KC Y PW P
Sbjct: 292 KVRGRCKCNLHATVCVYDNSKLT--------CECEHNTTGPDCGKCKKNYQGRPWSPG 341
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 340 QCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDP 391
+C CN H+T C +D S C+ CEHNT G +C +CK+ + P
Sbjct: 296 RCKCNLHATVCVYDN---------SKLTCE-CEHNTTGPDCGKCKKNYQGRP 337
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 866 RCICNGHADLC--DSKTGTCISCRNSTDGENCERCINGYYGDP 906
RC CN HA +C D+ TC C ++T G +C +C Y G P
Sbjct: 296 RCKCNLHATVCVYDNSKLTC-ECEHNTTGPDCGKCKKNYQGRP 337
>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2
Length = 338
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 46/255 (18%)
Query: 112 KTISWWQSENGVE-NVTIQLDMEAEFHFTHLIIYFKTFRPAAMLIERSHDFGKTWQVYRY 170
++I+W + + +E N+T+ + E +++ F+ RP M++E+S D G+TWQ Y++
Sbjct: 91 QSITWSRYPSPLEANITLSWNKTVELT-DDVVMTFEYGRPTVMVLEKSLDNGRTWQPYQF 149
Query: 171 FAADCAKSFPGIPRDGLRKLTD-----VYCESRYSSNNPSSGGEVILR---------VLP 216
+A DC ++F G+ R ++ V C Y S S E +R
Sbjct: 150 YAEDCMEAF-GMSARRARDMSSSSAHRVLCTEEY-SRWAGSKKEKHVRFEVRDRFAIFAG 207
Query: 217 PSLHHSNIDPYSSDVQN------LIKMTNLRINFTKLHTLGDDLLDTRRQIQEKYYYAIT 270
P L N+D + +++ +T+LR+ + LG + +R+ KY+YAI+
Sbjct: 208 PDLR--NMDNLYTRLESAKGLKEFFTLTDLRMRLLR-PALGGTYV--QRENLYKYFYAIS 262
Query: 271 QMIVRGSCSCYGHASRCLPISEADTKPDMVHG--RCECTHNTQGLNCEKCIDFYNDLPWK 328
+ V G C C HA+ C M G +CEC HNT G +C KC + W+
Sbjct: 263 NIEVIGRCKCNLHANLC----------SMREGSLQCECEHNTTGPDCGKCKKNFRTRSWR 312
Query: 329 -----PAFGSQTNAC 338
P NAC
Sbjct: 313 AGSYLPLPHGSPNAC 327
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 333 SQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYF 387
S +C CN H+ C E G + CEHNT G +C +CK+ F
Sbjct: 262 SNIEVIGRCKCNLHANLCSMRE----------GSLQCECEHNTTGPDCGKCKKNF 306
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 866 RCICNGHADLCDSKTGTC-ISCRNSTDGENCERCINGY 902
RC CN HA+LC + G+ C ++T G +C +C +
Sbjct: 269 RCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNF 306
>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains
pdb|3ZYG|B Chain B, Netring2 Lam And Egf1 Domains
pdb|3ZYI|B Chain B, Netring2 In Complex With Ngl2
Length = 353
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 46/255 (18%)
Query: 112 KTISWWQSENGVE-NVTIQLDMEAEFHFTHLIIYFKTFRPAAMLIERSHDFGKTWQVYRY 170
++I+W + + +E N+T+ + E +++ F+ RP M++E+S D G+TWQ Y++
Sbjct: 108 QSITWSRYPSPLEANITLSWNKTVELT-DDVVMTFEYGRPTVMVLEKSLDNGRTWQPYQF 166
Query: 171 FAADCAKSFPGIPRDGLRKLTD-----VYCESRYSSNNPSSGGEVILR---------VLP 216
+A DC ++F G+ R ++ V C Y S S E +R
Sbjct: 167 YAEDCMEAF-GMSARRARDMSSSSAHRVLCTEEY-SRWAGSKKEKHVRFEVRDRFAIFAG 224
Query: 217 PSLHHSNIDPYSSDVQN------LIKMTNLRINFTKLHTLGDDLLDTRRQIQEKYYYAIT 270
P L N+D + +++ +T+LR+ + LG + +R+ KY+YAI+
Sbjct: 225 PDLR--NMDNLYTRLESAKGLKEFFTLTDLRMRLLR-PALGGTYV--QRENLYKYFYAIS 279
Query: 271 QMIVRGSCSCYGHASRCLPISEADTKPDMVHG--RCECTHNTQGLNCEKCIDFYNDLPWK 328
+ V G C C HA+ C M G +CEC HNT G +C KC + W+
Sbjct: 280 NIEVIGRCKCNLHANLC----------SMREGSLQCECEHNTTGPDCGKCKKNFRTRSWR 329
Query: 329 -----PAFGSQTNAC 338
P NAC
Sbjct: 330 AGSYLPLPHGSPNAC 344
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 333 SQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYF 387
S +C CN H+ C E G + CEHNT G +C +CK+ F
Sbjct: 279 SNIEVIGRCKCNLHANLCSMRE----------GSLQCECEHNTTGPDCGKCKKNF 323
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 866 RCICNGHADLCDSKTGTC-ISCRNSTDGENCERCINGY 902
RC CN HA+LC + G+ C ++T G +C +C +
Sbjct: 286 RCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNF 323
>pdb|1TLE|A Chain A, Le (Laminin-Type Egf-Like) Module Giii4 In Solution At Ph
3.5 And 290 K, Nmr, 14 Structures
Length = 58
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 974 EPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQN 1024
PC C++N D GNC+ LTG+CL+C Y+T G +C CK GFFGN L N
Sbjct: 1 RPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPN 51
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 1077 EPCDC-DPIGSVDVTECNEYTGQC-QCKSGFGGRQCDQCQTNFWGNP 1121
PC C D I V CN TG+C +C G CD+C+ F+GNP
Sbjct: 1 RPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNP 47
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 867 CICNGHADL-----CDSKTGTCISCRNSTDGENCERCINGYYGDP 906
C CN + D C+ TG C+ C +T G C+RC G++G+P
Sbjct: 3 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNP 47
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 31/142 (21%)
Query: 785 CDQLGGNCVCKPNVVGRRCDR-CAPGTYG-------FGPEGCKACDCNHVGALDNICDVV 836
C + G C+C P +GR C++ C T+G G EGCK+ +V L +
Sbjct: 211 CHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKS----YVFCLPD----- 261
Query: 837 SGQCKCRAQTYGRECDQ-CSPGYWNYPTCQ-RCICNGHADLCDSKTGTCISCRNSTDGEN 894
C C G +C++ C PG++ P C+ RC CN + ++CD G C+ C G
Sbjct: 262 PYGCSCATGWKGLQCNEACHPGFYG-PDCKLRCSCN-NGEMCDRFQG-CL-CSPGWQGLQ 317
Query: 895 CERCINGYYGDPRLG---IDIP 913
CER G PR+ +D+P
Sbjct: 318 CER-----EGIPRMTPKIVDLP 334
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 1012 CKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIA 1071
C+A +G CT C N G C TG+C C P +G +C++ + H
Sbjct: 189 CEAQKWGPECNHLCTACMNN--------GVCHEDTGECICPPGFMGRTCEKACELH---T 237
Query: 1072 SGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQ-CQTNFWGNPNVECFPCDC 1130
G C+ G C C C +G+ G QC++ C F+G P+ + C C
Sbjct: 238 FGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYG-PDCK-LRCSC 295
Query: 1131 DPSGSATSQCHQNNGTCVCHQGIGGVRCD 1159
+ C + G C+C G G++C+
Sbjct: 296 N----NGEMCDRFQG-CLCSPGWQGLQCE 319
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 1092 CNEYTGQCQCKSGFGGRQCDQ-CQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCH 1150
C+E TG+C C GF GR C++ C+ + +G E C + C + C C
Sbjct: 211 CHEDTGECICPPGFMGRTCEKACELHTFGRTCKE--RCSGQEGCKSYVFCLPDPYGCSCA 268
Query: 1151 QGIGGVRC-DTCARGYIGTAPDC 1172
G G++C + C G+ G PDC
Sbjct: 269 TGWKGLQCNEACHPGFYG--PDC 289
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 841 KCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCER-CI 899
+C AQ +G EC+ C C+ NG +C TG CI C G CE+ C
Sbjct: 188 RCEAQKWGPECNH---------LCTACMNNG---VCHEDTGECI-CPPGFMGRTCEKACE 234
Query: 900 NGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRC-DGC 958
+G R C + + G C DP C C G++G +C + C
Sbjct: 235 LHTFG----------RTCKERCSGQEGCKSYVFCLPDPYG----CSCATGWKGLQCNEAC 280
Query: 959 LDNYFG 964
++G
Sbjct: 281 HPGFYG 286
>pdb|2CH7|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 40.0 bits (92), Expect = 0.011, Method: Composition-based stats.
Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 27/203 (13%)
Query: 1213 TKEFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNG-VGKTLGNTT 1271
+KE + + +IE + A V+ TT S +++ I D +Q + D + + K G+
Sbjct: 36 SKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQSTQLAKEAGDAL 95
Query: 1272 QR-INLARLALNDL-------------TEEIKKLNKTGEMLKENATLLQENNVEGALELT 1317
++ I + R+ N EEI +T + E LL N A+E
Sbjct: 96 KKVIEVTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNLLALN---AAIEAA 152
Query: 1318 RQAH---------DTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEK 1368
R D KL E+S + + + + + K + T EE K
Sbjct: 153 RAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTK 212
Query: 1369 ALQRLNEKITSLEKNLPDLNELI 1391
+EK+ S+ + +NE++
Sbjct: 213 LADEADEKLNSIVGAVERINEML 235
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 57/333 (17%), Positives = 129/333 (38%), Gaps = 43/333 (12%)
Query: 1349 ENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLXXXXXX 1408
+++ T+TF + EE KA + + ++ + K + +++ I +++
Sbjct: 5 KDVQTETF-SVAESIEEISKANEEITNQLLGISKEMDNISTRI--------ESISASVQE 55
Query: 1409 XXXXXMWCSNGTLSESNSAKDYAETSKKLINEKESKAEELRKHMIILSE-SNSAKDYAET 1467
S+ T + ++SA+ A + + + + L+K + + SNSAKD
Sbjct: 56 TTAGSEEISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDV--- 112
Query: 1468 SKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQ 1527
++++ + AEE+ + T + N+LA A AA + I K
Sbjct: 113 -ERVVESFQKGAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKL 171
Query: 1528 LDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAG 1587
+E Q E +R NEI ++ + + + +T
Sbjct: 172 AEE-----------------------SQQASENVRRVVNEIRSIAEDAGKVSSEIT---- 204
Query: 1588 DLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKD 1647
A+ + + A+ +S V++I ++L A + A+ ++ K+
Sbjct: 205 --ARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKN 262
Query: 1648 LSQITNDLDDAQQKSNETNVKVKLLQERLKSIQ 1680
+ITN + + + E + + + R+++I+
Sbjct: 263 AEEITNSVKEVNARLQEISASTEEVTSRVQTIR 295
>pdb|2CH7|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 27/203 (13%)
Query: 1213 TKEFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNG-VGKTLGNTT 1271
+KE + + +IE + A V+ TT S +++ I D +Q + D + + K G+
Sbjct: 36 SKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQSTQLAKEAGDAL 95
Query: 1272 QR-INLARLALNDL-------------TEEIKKLNKTGEMLKENATLLQENNVEGALELT 1317
++ I + R+ N EEI +T + E LL N A+E
Sbjct: 96 KKVIEVTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNLLALN---AAIEAA 152
Query: 1318 RQAH---------DTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEK 1368
R D KL E+S + + + + + K + T EE K
Sbjct: 153 RAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTK 212
Query: 1369 ALQRLNEKITSLEKNLPDLNELI 1391
+EK+ S+ + +NE++
Sbjct: 213 LADEADEKLNSIVGAVERINEML 235
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 57/333 (17%), Positives = 129/333 (38%), Gaps = 43/333 (12%)
Query: 1349 ENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLXXXXXX 1408
+++ T+TF + EE KA + + ++ + K + +++ I +++
Sbjct: 5 KDVQTETF-SVAESIEEISKANEEITNQLLGISKEMDNISTRI--------ESISASVQE 55
Query: 1409 XXXXXMWCSNGTLSESNSAKDYAETSKKLINEKESKAEELRKHMIILSE-SNSAKDYAET 1467
S+ T + ++SA+ A + + + + L+K + + SNSAKD
Sbjct: 56 TTAGSEEISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDV--- 112
Query: 1468 SKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQ 1527
++++ + AEE+ + T + N+LA A AA + I K
Sbjct: 113 -ERVVESFQKGAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKL 171
Query: 1528 LDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAG 1587
+E Q E +R NEI ++ + + + +T
Sbjct: 172 AEE-----------------------SQQASENVRRVVNEIRSIAEDAGKVSSEIT---- 204
Query: 1588 DLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKD 1647
A+ + + A+ +S V++I ++L A + A+ ++ K+
Sbjct: 205 --ARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQNAAVDEITTAMTENAKN 262
Query: 1648 LSQITNDLDDAQQKSNETNVKVKLLQERLKSIQ 1680
+ITN + + + E + + + R+++I+
Sbjct: 263 AEEITNSVKEVNARLQEISASTEEVTSRVQTIR 295
>pdb|2TMA|A Chain A, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For Tropomyosin
And Implications For Interactions With Actin
pdb|2TMA|B Chain B, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For Tropomyosin
And Implications For Interactions With Actin
Length = 284
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 1311 EGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKAL 1370
E AL+ QA +++S + E ++ +++ K TE+ + K +++ ++ ++ L
Sbjct: 16 ENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDK----YSEALKDAQEKL 71
Query: 1371 QRLNEKITSLEKNLPDLNELICDKRGDPCDNLXXXXXXXXXXXMWCSNGTLSESNSAKDY 1430
+ +K T E ++ LN I L + + L E+ A D
Sbjct: 72 ELAEKKATDAEADVASLNRRI---------QLVEEELDRAQERLATALQKLEEAEKAADE 122
Query: 1431 AETSKKLINEKESKAEE-LRKHMIILSES-----NSAKDYAETSKKL--INEKEAKAEE 1481
+E K+I + K EE + I L E+ ++ + Y E ++KL I +AEE
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 181
>pdb|2W49|A Chain A, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|B Chain B, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|C Chain C, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|T Chain T, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|U Chain U, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|V Chain V, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|W Chain W, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|X Chain X, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W4U|A Chain A, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|B Chain B, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|C Chain C, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|T Chain T, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|U Chain U, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|V Chain V, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|W Chain W, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|X Chain X, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
Length = 277
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 1311 EGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKAL 1370
E AL+ QA +++S + E ++ +++ K TE+ + K +++ ++ ++ L
Sbjct: 9 ENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDK----YSEALKDAQEKL 64
Query: 1371 QRLNEKITSLEKNLPDLNELICDKRGDPCDNLXXXXXXXXXXXMWCSNGTLSESNSAKDY 1430
+ +K T E ++ LN I L + + L E+ A D
Sbjct: 65 ELAEKKATDAEADVASLNRRI---------QLVEEELDRAQERLATALQKLEEAEKAADE 115
Query: 1431 AETSKKLINEKESKAEE-LRKHMIILSES-----NSAKDYAETSKKL--INEKEAKAEE 1481
+E K+I + K EE + I L E+ ++ + Y E ++KL I +AEE
Sbjct: 116 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 174
>pdb|3TKL|B Chain B, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The
Coiled- Coil Domain Of Lida From Legionella Pneumophila
Length = 267
Score = 35.4 bits (80), Expect = 0.27, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 1295 GEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTK 1354
G + ++T + ++ L+ QA + + ++ E EK+++ ERQ K E+ K
Sbjct: 1 GPLGSTSSTSQADKEIQKMLDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKY-K 59
Query: 1355 TFPQFTQGQEE-----NEKALQRLNEKITSLEKNLPDLNELICDKRGD 1397
T+ + +G E+ E +L +NEK+ + K+ L +L+ +GD
Sbjct: 60 TYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSEKLTQLMEKHKGD 107
>pdb|3TNF|B Chain B, Lida From Legionella In Complex With Active Rab8a
Length = 384
Score = 35.0 bits (79), Expect = 0.35, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 1312 GALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEE-----N 1366
G L+ QA + + ++ E EK+++ ERQ K E+ KT+ + +G E+
Sbjct: 1 GMLDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKY-KTYEENLEGFEKLLTDSE 59
Query: 1367 EKALQRLNEKITSLEKNLPDLNELICDKRGD 1397
E +L +NEK+ + K+ L +L+ +GD
Sbjct: 60 ELSLSEINEKMEAFSKDSEKLTQLMEKHKGD 90
>pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
Length = 317
Score = 34.7 bits (78), Expect = 0.49, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 1580 TILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKD 1639
T+ +T G + + ++R ++ G + N +Q V +T A Q A++ A+D
Sbjct: 11 TLEAQTQGPGSMVDPVRRSTRVSARGQGARMNRLQGKVAFITGAARGQGRTH-AVRLAQD 69
Query: 1640 DISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQA 1681
DL + +LD AQ E V+L++E+ + I A
Sbjct: 70 GADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIA 111
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 34.3 bits (77), Expect = 0.65, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 1311 EGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKAL 1370
E AL+ +A +++S + E ++ +++ K TE+ + K +++ ++ ++ L
Sbjct: 16 ENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDK----YSEALKDAQEKL 71
Query: 1371 QRLNEKITSLEKNLPDLNELICDKRGDPCDNLXXXXXXXXXXXMWCSNGTLSESNSAKDY 1430
+ +K T E ++ LN I L + + L E+ A D
Sbjct: 72 ELAEKKATDAEADVASLNRRI---------QLFEEELDRAQERLATALQKLEEAEKAADE 122
Query: 1431 AETSKKLINEKESKAEE-LRKHMIILSES-----NSAKDYAETSKKL--INEKEAKAEE 1481
+E K+I + K EE + I L E+ ++ + Y E ++KL I +AEE
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 181
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 1447 ELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYD- 1505
ELR + I++ +N + E+ NE+ A+ E + + T + + + L+ E +D
Sbjct: 231 ELRDYDIVIMNTNKPRALTESK---YNERFAETREALKRMQT-RLDIQSLGELSNEEFDA 286
Query: 1506 ---------------HAASVRNKTA----AYVASTSNITKQLDEFLNAPGATLADIRNIS 1546
HA N+T A+VA N+TK E LNA A+L D ++
Sbjct: 287 NTDLIGDETLIKRARHAVYENNRTKIAQKAFVAG--NLTK-FGELLNASHASLKDDYEVT 343
Query: 1547 GLAVNKNIQSNPEQ 1560
GL ++ ++ +Q
Sbjct: 344 GLELDTLAETAQKQ 357
>pdb|3LY4|A Chain A, Crystal Structure Of Fluorophore-Labeled Class A -Lactamase
Penp- E166cb In Compelx With Penicillin G
pdb|3M2J|A Chain A, Crystal Structure Of Fluorescein-Labeled Class A -Lactamase
Penp
pdb|3M2J|B Chain B, Crystal Structure Of Fluorescein-Labeled Class A -Lactamase
Penp
pdb|3M2K|A Chain A, Crystal Structure Of Fluorescein-Labeled Class A -Beta
Lactamase Penp In Complex With Cefotaxime
pdb|3M2K|B Chain B, Crystal Structure Of Fluorescein-Labeled Class A -Beta
Lactamase Penp In Complex With Cefotaxime
Length = 257
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 1316 LTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNE 1375
+T + DT + LKE + + + ++A +NL+ K G E +K L+++ +
Sbjct: 76 ITEKHVDTGMTLKELADASLRYSDNA------AQNLILKQI----GGPESLKKELRKIGD 125
Query: 1376 KITSLEKNLPDLNEL 1390
++T+ E+ P+LNE+
Sbjct: 126 EVTNPERFCPELNEV 140
>pdb|1MBL|A Chain A, A Catalytically-Impaired Class A Beta-Lactamase: 2 Angstroms
Crystal Structure And Kinetics Of The Bacillus
Licheniformis E166a Mutant
pdb|1MBL|B Chain B, A Catalytically-Impaired Class A Beta-Lactamase: 2 Angstroms
Crystal Structure And Kinetics Of The Bacillus
Licheniformis E166a Mutant
Length = 256
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 1316 LTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNE 1375
+T + DT + LKE + + + ++A +NL+ K G E +K L+++ +
Sbjct: 75 ITEKHVDTGMTLKELADASLRYSDNA------AQNLILKQI----GGPESLKKELRKIGD 124
Query: 1376 KITSLEKNLPDLNEL 1390
++T+ E+ P+LNE+
Sbjct: 125 EVTNPERFAPELNEV 139
>pdb|3LY3|A Chain A, Crystal Structure Of Fluorophore-Labeled Class A
Beta-Lactamase Penp
Length = 259
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 1316 LTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNE 1375
+T + DT + LKE + + + ++A +NL+ K G E +K L+++ +
Sbjct: 76 ITEKHVDTGMTLKELADASLRYSDNA------AQNLILKQI----GGPESLKKELRKIGD 125
Query: 1376 KITSLEKNLPDLNEL 1390
++T+ E+ P+LNE+
Sbjct: 126 EVTNPERFCPELNEV 140
>pdb|3SH7|A Chain A, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase Penp
pdb|3SH7|B Chain B, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase Penp
pdb|3SH8|A Chain A, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase Penp
In Complex With Cephaloridine
pdb|3SH8|B Chain B, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase Penp
In Complex With Cephaloridine
pdb|3SH9|A Chain A, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase Penp
In Complex With Cefotaxime
pdb|3SH9|B Chain B, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase Penp
In Complex With Cefotaxime
Length = 266
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 1316 LTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNE 1375
+T + DT + LKE + + + ++A +NL+ K G E +K L+++ +
Sbjct: 81 ITEKHVDTGMTLKELADASLRYSDNA------AQNLILKQI----GGPESLKKELRKIGD 130
Query: 1376 KITSLEKNLPDLNEL 1390
++T+ E+ P+LNE+
Sbjct: 131 EVTNPERFCPELNEV 145
>pdb|1UCU|A Chain A, R-type Straight Flagellar Filament Made Of Full-length
Flagellin
Length = 494
Score = 31.2 bits (69), Expect = 5.2, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 1586 AGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQ-DMAEVA--IQTAKDDIS 1642
A A+ ++ K + +L +A A +T+N +QKI L + T + D+ V +A ++
Sbjct: 381 AASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLG 440
Query: 1643 AARKDLSQITNDLDDAQQKSNETNV-KVKLLQERLKSIQA 1681
+L+ + + ++D+ + +N+ + ++LQ+ S+ A
Sbjct: 441 NTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSVLA 480
>pdb|3A5X|A Chain A, L-Type Straight Flagellar Filament Made Of Full-Length
Flagellin
Length = 494
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 1586 AGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQ-DMAEVA--IQTAKDDIS 1642
A A+ ++ K + +L +A A +T+N +QKI L + T + D+A V +A ++
Sbjct: 381 AASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLAAVQNRFNSAITNLG 440
Query: 1643 AARKDLSQITNDLDDAQQKSNETNV-KVKLLQERLKSIQA 1681
+L+ + ++D+ + +N+ + ++LQ+ S+ A
Sbjct: 441 NTVNNLTSARSRIEDSDYATEVSNMSRAQILQQAGTSVLA 480
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 985 ALPGNCDTLTGKCL-QCRYDTEGDHCQVCKAGFFG-NALEQNCTECTCNIL 1033
A+ G G+CL Q Y+ D CQ C GFF A E C EC + L
Sbjct: 253 AVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTL 303
>pdb|2BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|2BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|4BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
pdb|4BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
Length = 265
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 1316 LTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNE 1375
+T + DT + LKE + + + ++A +NL+ K G E +K L+++ +
Sbjct: 80 ITEKHVDTGMTLKELADASLRYSDNA------AQNLILKQI----GGPESLKKELRKIGD 129
Query: 1376 KITSLEKNLPDLNEL 1390
++T+ E+ P+LNE+
Sbjct: 130 EVTNPERFEPELNEV 144
>pdb|3SOI|A Chain A, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
pdb|3SOI|B Chain B, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
Length = 258
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 1316 LTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNE 1375
+T + DT + LKE + + + ++A +NL+ K G E +K L+++ +
Sbjct: 77 ITEKHVDTGMTLKELADASLRYSDNA------AQNLILKQI----GGPESLKKELRKIGD 126
Query: 1376 KITSLEKNLPDLNEL 1390
++T+ E+ P+LNE+
Sbjct: 127 EVTNPERFEPELNEV 141
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 985 ALPGNCDTLTGKCL-QCRYDTEGDHCQVCKAGFFG-NALEQNCTECTCNIL 1033
A+ G G+CL Q Y+ D CQ C GFF A E C EC + L
Sbjct: 250 AVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTL 300
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 985 ALPGNCDTLTGKCL-QCRYDTEGDHCQVCKAGFFG-NALEQNCTECTCNIL 1033
A+ G G+CL Q Y+ D CQ C GFF A E C EC + L
Sbjct: 250 AVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTL 300
>pdb|2BDD|A Chain A, Crystal Structure Of Holo-Acp-Synthase From Plasmodium
Yoelii
Length = 182
Score = 31.2 bits (69), Expect = 6.2, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 1432 ETSKKLINEKESKAEELRKHMIILSESNSAKD 1463
ET KK +NEK +K+ EL+K I +S+ +AK+
Sbjct: 61 ETQKKKLNEKINKSNELKKLAIYVSKKFAAKE 92
>pdb|2QG8|A Chain A, Plasmodium Yoelii Acyl Carrier Protein Synthase Py06285 With
Adp Bound
Length = 163
Score = 31.2 bits (69), Expect = 6.2, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 1432 ETSKKLINEKESKAEELRKHMIILSESNSAKD 1463
ET KK +NEK +K+ EL+K I +S+ +AK+
Sbjct: 42 ETQKKKLNEKINKSNELKKLAIYVSKKFAAKE 73
>pdb|1NT2|B Chain B, Crystal Structure Of FibrillarinNOP5P COMPLEX
Length = 258
Score = 31.2 bits (69), Expect = 6.2, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1517 YVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLT 1576
YV + +++DE +N L DIR + + + + ++RE ++ I+ +
Sbjct: 76 YVVALVKALEEIDESINMLNEKLEDIRAVKESEITEKFEKKIRELRELRRDVEREIEEVM 135
Query: 1577 D-IDTILTETAGDLAKANDLKRKANLTK 1603
+ I +TE G A L+R ++ +
Sbjct: 136 EKIAPNMTELVGAKVAAKLLERAGSMER 163
>pdb|3N3U|A Chain A, Crystal Structure Of Ibpafic2
Length = 299
Score = 30.8 bits (68), Expect = 7.0, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 40/167 (23%)
Query: 1539 LADIRNISGLAV-----NKNIQSN---PEQIRERANEINN---------VIKSLTDIDTI 1581
L D N+ GL N N +SN E+ + A EI+ + L + D I
Sbjct: 6 LEDNLNLKGLISLEDDRNANFESNVLKNEKFLDEAREISKKSIPEATVKQMSHLPEFDDI 65
Query: 1582 LTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDI 1641
LTE A K ++ + KA T + V+ +E QD+ + +T
Sbjct: 66 LTEGAK--------KVESRINKA------ITFRPSVEEFSEI---QDLVKTLPKTK---- 104
Query: 1642 SAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGR 1688
+DLS TN++ +A +++T + L+E+LK+ FLQN +
Sbjct: 105 --VIEDLSTKTNEITEALAATSKTIQRTPELKEQLKTAIEDFLQNSQ 149
>pdb|2IW4|A Chain A, Crystal Structure Of Basillus Subtilis Family Ii Inorganic
Pyrophosphatase Mutant, H98q, In Complex With Pnp
pdb|2IW4|B Chain B, Crystal Structure Of Basillus Subtilis Family Ii Inorganic
Pyrophosphatase Mutant, H98q, In Complex With Pnp
Length = 309
Score = 30.8 bits (68), Expect = 8.2, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 1574 SLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVA 1633
+ TD D + ++A + + N+ KAGAD +K TV++++ + D E
Sbjct: 157 TCTDQDVAAAKELAEIAGVDAEEYGLNMLKAGADLSKKTVEELISL--------DAKEFT 208
Query: 1634 IQTAKDDISAARKDLSQITNDLDDAQQKSNE 1664
+ + K +I+ T D++D +++ E
Sbjct: 209 LGSKKVEIAQVN------TVDIEDVKKRQAE 233
>pdb|1WPM|A Chain A, Structure Of Bacillus Subtilis Inorganic Pyrophosphatase
pdb|1WPM|B Chain B, Structure Of Bacillus Subtilis Inorganic Pyrophosphatase
pdb|2HAW|A Chain A, Crystal Structure Of Family Ii Inorganic Pyrophosphatase In
Complex With Pnp
pdb|2HAW|B Chain B, Crystal Structure Of Family Ii Inorganic Pyrophosphatase In
Complex With Pnp
Length = 309
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 1574 SLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVA 1633
+ TD D + ++A + + N+ KAGAD +K TV++++ + D E
Sbjct: 157 TCTDQDVAAAKELAEIAGVDAEEYGLNMLKAGADLSKKTVEELISL--------DAKEFT 208
Query: 1634 IQTAKDDISAARKDLSQITNDLDDAQQKSNE 1664
+ + K +I+ T D++D +++ E
Sbjct: 209 LGSKKVEIAQVN------TVDIEDVKKRQAE 233
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 985 ALPGNCDTLTGKCL-QCRYDTEGDHCQVCKAGFFG-NALEQNCTECTCNIL 1033
A+ G G+CL Q Y+ D CQ C GFF A E C EC + L
Sbjct: 222 AVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTL 272
>pdb|1WT6|A Chain A, Coiled-Coil Domain Of Dmpk
pdb|1WT6|B Chain B, Coiled-Coil Domain Of Dmpk
pdb|1WT6|D Chain D, Coiled-Coil Domain Of Dmpk
Length = 81
Score = 30.4 bits (67), Expect = 8.9, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 1620 LTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSI 1679
L E + A + + Q+ ++ A R D + L +A+ ++ + V+ LQER++ +
Sbjct: 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71
Query: 1680 QA 1681
QA
Sbjct: 72 QA 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,029,657
Number of Sequences: 62578
Number of extensions: 2497000
Number of successful extensions: 6561
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 5914
Number of HSP's gapped (non-prelim): 522
length of query: 1807
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1694
effective length of database: 7,902,023
effective search space: 13386026962
effective search space used: 13386026962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)