Query psy2547
Match_columns 1807
No_of_seqs 575 out of 2990
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 18:59:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0994|consensus 100.0 0E+00 0E+00 3257.7 139.3 1745 6-1806 2-1758(1758)
2 KOG1836|consensus 100.0 7E-146 1E-150 1461.0 41.7 987 38-1204 40-1066(1705)
3 KOG0994|consensus 100.0 6E-134 1E-138 1216.4 90.1 1338 339-1798 269-1743(1758)
4 KOG3512|consensus 100.0 2E-100 4E-105 865.0 29.1 432 31-495 33-479 (592)
5 KOG1836|consensus 100.0 4.9E-67 1.1E-71 702.6 41.0 850 125-1167 193-1083(1705)
6 smart00136 LamNT Laminin N-ter 100.0 7.5E-66 1.6E-70 577.5 20.6 230 35-276 2-238 (238)
7 PF00055 Laminin_N: Laminin N- 100.0 1.5E-63 3.3E-68 561.5 12.7 228 40-276 1-237 (237)
8 KOG3512|consensus 99.9 3.8E-27 8.2E-32 269.3 10.4 196 338-547 275-480 (592)
9 TIGR00606 rad50 rad50. This fa 99.8 1.1E-13 2.4E-18 195.9 70.6 217 1215-1465 448-672 (1311)
10 KOG4289|consensus 99.8 8.1E-19 1.8E-23 219.3 13.4 108 1048-1174 1740-1853(2531)
11 KOG4289|consensus 99.8 4.5E-16 9.8E-21 195.3 35.8 121 931-1127 1728-1853(2531)
12 PRK02224 chromosome segregatio 99.8 9.3E-13 2E-17 181.9 72.2 102 1605-1707 538-639 (880)
13 KOG0161|consensus 99.7 7.8E-12 1.7E-16 172.1 73.5 38 1759-1796 1506-1543(1930)
14 KOG0161|consensus 99.7 1.9E-11 4.2E-16 168.3 75.1 7 227-233 131-137 (1930)
15 PRK02224 chromosome segregatio 99.7 6.3E-12 1.4E-16 173.7 70.3 29 1613-1641 525-553 (880)
16 TIGR02169 SMC_prok_A chromosom 99.7 4.3E-12 9.2E-17 181.8 68.4 22 1483-1504 527-548 (1164)
17 TIGR02168 SMC_prok_B chromosom 99.7 4E-11 8.6E-16 172.3 73.5 13 1564-1576 675-687 (1179)
18 KOG0996|consensus 99.7 5.5E-11 1.2E-15 151.7 64.1 8 1245-1252 341-348 (1293)
19 COG1196 Smc Chromosome segrega 99.7 1.5E-10 3.3E-15 162.2 74.2 36 1759-1794 878-913 (1163)
20 TIGR00606 rad50 rad50. This fa 99.7 8.6E-11 1.9E-15 166.7 71.8 18 1214-1231 471-488 (1311)
21 KOG0933|consensus 99.7 2.4E-10 5.2E-15 143.6 66.2 25 1436-1460 448-472 (1174)
22 KOG0976|consensus 99.7 1E-10 2.3E-15 141.8 60.0 191 1608-1798 327-523 (1265)
23 PF12128 DUF3584: Protein of u 99.7 1.5E-10 3.2E-15 162.4 70.5 25 1281-1305 315-339 (1201)
24 KOG3509|consensus 99.6 1.2E-13 2.6E-18 178.0 34.7 169 941-1120 717-903 (964)
25 KOG4674|consensus 99.6 2.1E-10 4.6E-15 155.1 66.3 67 1644-1710 1234-1300(1822)
26 KOG0996|consensus 99.6 6.5E-10 1.4E-14 142.2 66.4 15 1240-1254 343-357 (1293)
27 KOG4674|consensus 99.6 2.2E-09 4.8E-14 145.5 68.5 58 1735-1792 1241-1298(1822)
28 KOG3509|consensus 99.6 8.1E-14 1.8E-18 179.5 25.2 194 781-1020 709-904 (964)
29 KOG0933|consensus 99.6 7.8E-09 1.7E-13 130.4 64.7 57 1735-1791 963-1020(1174)
30 PRK01156 chromosome segregatio 99.6 9.4E-09 2E-13 142.3 73.1 21 1654-1674 588-608 (895)
31 KOG0964|consensus 99.6 2.4E-08 5.1E-13 125.5 67.9 28 1273-1300 259-286 (1200)
32 PF05483 SCP-1: Synaptonemal c 99.6 8.3E-08 1.8E-12 117.2 70.0 40 1761-1800 618-657 (786)
33 PF12128 DUF3584: Protein of u 99.5 9.6E-09 2.1E-13 144.4 69.5 11 1441-1451 447-457 (1201)
34 KOG0250|consensus 99.5 1.3E-08 2.8E-13 131.3 64.0 55 1600-1654 664-718 (1074)
35 KOG0250|consensus 99.5 3.2E-09 6.8E-14 136.8 57.0 26 1492-1517 509-534 (1074)
36 KOG0976|consensus 99.5 1.5E-08 3.2E-13 123.6 59.2 34 1272-1305 92-125 (1265)
37 KOG0964|consensus 99.5 9.9E-08 2.2E-12 120.1 65.7 29 1427-1455 354-382 (1200)
38 KOG0971|consensus 99.5 1.3E-07 2.9E-12 117.4 65.1 89 1334-1449 387-475 (1243)
39 PF10174 Cast: RIM-binding pro 99.5 5.6E-08 1.2E-12 126.4 64.1 27 1605-1631 337-363 (775)
40 PF05701 WEMBL: Weak chloropla 99.5 3.1E-08 6.7E-13 126.9 60.9 34 1419-1452 155-188 (522)
41 PF10174 Cast: RIM-binding pro 99.5 1E-07 2.2E-12 124.1 64.4 56 1715-1770 547-602 (775)
42 PRK04863 mukB cell division pr 99.4 4.1E-07 9E-12 127.0 72.5 41 1760-1800 1076-1116(1486)
43 PRK04778 septation ring format 99.4 2.2E-08 4.7E-13 130.2 56.7 160 1643-1803 352-513 (569)
44 PF05483 SCP-1: Synaptonemal c 99.4 3.8E-06 8.3E-11 103.1 72.0 20 1777-1796 744-763 (786)
45 KOG4643|consensus 99.4 3.1E-07 6.7E-12 116.1 60.8 147 1600-1750 411-557 (1195)
46 PRK04863 mukB cell division pr 99.4 4.2E-07 9.1E-12 126.9 68.9 38 1353-1390 441-478 (1486)
47 PRK04778 septation ring format 99.4 8.1E-08 1.7E-12 125.0 56.5 19 1207-1225 57-75 (569)
48 KOG0978|consensus 99.4 3.1E-06 6.7E-11 107.3 67.8 114 1678-1791 507-620 (698)
49 PF05701 WEMBL: Weak chloropla 99.4 1.9E-07 4.1E-12 119.8 58.0 31 1326-1356 38-68 (522)
50 KOG4673|consensus 99.4 1.2E-06 2.6E-11 106.4 59.5 18 1780-1797 933-950 (961)
51 PF06160 EzrA: Septation ring 99.4 2.8E-07 6E-12 119.4 59.1 19 1208-1226 54-72 (560)
52 KOG4593|consensus 99.3 8.1E-06 1.8E-10 101.4 66.7 30 1773-1802 601-630 (716)
53 KOG0018|consensus 99.3 8.6E-07 1.9E-11 113.8 57.9 76 1605-1680 677-752 (1141)
54 PF13514 AAA_27: AAA domain 99.3 1.1E-05 2.3E-10 114.0 74.4 22 1370-1391 362-383 (1111)
55 PF13514 AAA_27: AAA domain 99.3 4.3E-06 9.4E-11 117.8 70.5 39 1267-1305 348-386 (1111)
56 PF06160 EzrA: Septation ring 99.3 7.7E-07 1.7E-11 115.3 57.9 28 1760-1787 467-494 (560)
57 KOG0962|consensus 99.3 3.6E-06 7.7E-11 112.0 63.9 38 1428-1465 634-671 (1294)
58 KOG4643|consensus 99.3 2.8E-05 6.1E-10 99.1 67.4 66 1323-1389 178-243 (1195)
59 PF00261 Tropomyosin: Tropomyo 99.3 4E-09 8.7E-14 121.7 31.1 198 1601-1798 33-230 (237)
60 KOG0018|consensus 99.3 6.4E-06 1.4E-10 106.1 61.1 11 1224-1234 143-153 (1141)
61 PF00261 Tropomyosin: Tropomyo 99.2 5.9E-09 1.3E-13 120.3 30.8 199 1598-1796 37-235 (237)
62 TIGR02680 conserved hypothetic 99.2 7.9E-06 1.7E-10 116.0 67.5 33 1274-1306 292-324 (1353)
63 KOG0962|consensus 99.2 3.3E-05 7.1E-10 103.1 66.8 17 1369-1385 639-655 (1294)
64 COG4477 EzrA Negative regulato 99.2 2.4E-05 5.3E-10 94.5 58.8 33 1607-1639 378-410 (570)
65 PF07888 CALCOCO1: Calcium bin 99.2 1.3E-06 2.7E-11 108.1 49.0 46 1753-1798 412-457 (546)
66 KOG4673|consensus 99.1 0.00011 2.4E-09 90.0 64.7 68 1731-1798 888-958 (961)
67 KOG4593|consensus 99.1 0.00016 3.4E-09 90.3 61.7 21 1779-1799 600-620 (716)
68 PF01576 Myosin_tail_1: Myosin 99.1 1.2E-11 2.6E-16 166.0 0.0 123 1605-1727 610-732 (859)
69 PF09730 BicD: Microtubule-ass 99.1 0.00018 4E-09 92.9 64.0 52 1324-1379 130-181 (717)
70 COG4477 EzrA Negative regulato 99.1 3.4E-05 7.3E-10 93.4 53.1 18 1237-1254 62-79 (570)
71 PF07888 CALCOCO1: Calcium bin 99.1 1E-05 2.2E-10 100.3 49.5 47 1752-1798 418-464 (546)
72 TIGR02680 conserved hypothetic 99.1 7.8E-05 1.7E-09 106.1 65.2 39 1267-1305 278-316 (1353)
73 PRK10246 exonuclease subunit S 99.1 0.00027 5.9E-09 98.8 69.5 9 1396-1405 503-511 (1047)
74 PF01576 Myosin_tail_1: Myosin 99.1 2.4E-11 5.2E-16 163.2 0.0 187 1613-1799 555-763 (859)
75 KOG0979|consensus 99.1 0.0001 2.2E-09 94.9 58.4 24 1758-1781 870-893 (1072)
76 KOG0971|consensus 99.1 6.6E-06 1.4E-10 102.9 46.5 16 1664-1679 459-474 (1243)
77 KOG0612|consensus 99.0 3.8E-06 8.2E-11 109.3 45.6 6 846-851 257-262 (1317)
78 PTZ00121 MAEBL; Provisional 99.0 0.00058 1.3E-08 89.9 65.7 16 373-388 247-262 (2084)
79 KOG1225|consensus 99.0 2E-09 4.4E-14 132.8 12.7 202 837-1157 160-365 (525)
80 KOG0612|consensus 99.0 9.9E-06 2.1E-10 105.5 45.6 23 1427-1449 463-485 (1317)
81 KOG0995|consensus 99.0 6.5E-05 1.4E-09 91.9 49.7 59 1434-1492 233-291 (581)
82 PTZ00121 MAEBL; Provisional 99.0 0.00089 1.9E-08 88.2 66.2 14 370-383 282-295 (2084)
83 PF06008 Laminin_I: Laminin Do 98.9 1.9E-07 4.1E-12 110.0 26.9 190 1200-1391 6-201 (264)
84 KOG1225|consensus 98.9 5E-09 1.1E-13 129.5 12.9 203 788-1109 159-365 (525)
85 PF07111 HCR: Alpha helical co 98.9 0.00083 1.8E-08 84.1 65.4 70 1716-1785 589-659 (739)
86 COG4372 Uncharacterized protei 98.9 4.4E-06 9.5E-11 95.8 34.3 39 1752-1790 246-284 (499)
87 PF05557 MAD: Mitotic checkpoi 98.9 3.7E-09 8.1E-14 141.6 11.7 35 1768-1802 602-636 (722)
88 KOG0517|consensus 98.9 0.0021 4.5E-08 86.8 64.1 57 1516-1572 1194-1252(2473)
89 PF15450 DUF4631: Domain of un 98.9 0.00086 1.9E-08 81.7 61.0 13 1324-1336 101-113 (531)
90 PF15450 DUF4631: Domain of un 98.9 0.00075 1.6E-08 82.2 53.1 21 1558-1578 307-327 (531)
91 COG1340 Uncharacterized archae 98.9 3.5E-05 7.6E-10 88.3 39.9 114 1468-1582 39-154 (294)
92 KOG0977|consensus 98.9 6.8E-06 1.5E-10 101.8 37.0 109 1692-1800 279-391 (546)
93 COG4372 Uncharacterized protei 98.9 1.4E-05 3E-10 91.8 36.4 66 1732-1797 219-284 (499)
94 PF09730 BicD: Microtubule-ass 98.8 7.9E-05 1.7E-09 96.2 45.5 23 1467-1489 125-147 (717)
95 KOG1003|consensus 98.8 4E-06 8.7E-11 88.7 27.7 176 1620-1795 20-195 (205)
96 KOG0999|consensus 98.8 0.0012 2.5E-08 79.5 56.3 50 1468-1517 199-255 (772)
97 PRK11637 AmiB activator; Provi 98.8 3E-06 6.5E-11 107.2 31.9 60 1604-1663 61-120 (428)
98 KOG0979|consensus 98.8 0.0018 3.9E-08 84.0 55.6 34 1765-1798 863-896 (1072)
99 KOG0999|consensus 98.8 0.0014 2.9E-08 79.0 58.6 100 1277-1380 147-255 (772)
100 PF07111 HCR: Alpha helical co 98.8 0.0021 4.5E-08 80.7 60.7 23 1368-1390 162-184 (739)
101 KOG0517|consensus 98.8 0.0042 9E-08 84.1 60.5 44 228-275 109-158 (2473)
102 KOG0963|consensus 98.8 0.00033 7.2E-09 86.7 46.8 31 1595-1625 240-270 (629)
103 KOG0995|consensus 98.8 0.00026 5.7E-09 86.8 45.2 14 1558-1571 331-344 (581)
104 cd00055 EGF_Lam Laminin-type e 98.8 6.3E-09 1.4E-13 88.9 4.4 49 461-511 1-49 (50)
105 smart00180 EGF_Lam Laminin-typ 98.8 5.9E-09 1.3E-13 87.2 3.9 40 462-502 1-40 (46)
106 KOG1003|consensus 98.8 9.8E-06 2.1E-10 85.8 28.5 191 1606-1796 13-203 (205)
107 COG3096 MukB Uncharacterized p 98.8 0.0021 4.6E-08 79.3 61.4 188 1529-1727 909-1112(1480)
108 KOG0977|consensus 98.8 1.2E-05 2.6E-10 99.8 33.9 54 1609-1662 139-192 (546)
109 PF05911 DUF869: Plant protein 98.8 0.00094 2E-08 87.7 52.8 108 1642-1749 606-713 (769)
110 COG5185 HEC1 Protein involved 98.8 9.2E-05 2E-09 87.2 38.8 28 1431-1458 332-359 (622)
111 KOG0963|consensus 98.7 0.00012 2.5E-09 90.5 40.8 33 1692-1724 239-271 (629)
112 PF00053 Laminin_EGF: Laminin 98.7 3.4E-09 7.4E-14 90.4 1.6 49 462-511 1-49 (49)
113 PF00038 Filament: Intermediat 98.7 0.00012 2.5E-09 89.1 40.4 51 1593-1643 85-135 (312)
114 PHA02562 46 endonuclease subun 98.7 8.6E-06 1.9E-10 107.5 32.9 57 1714-1770 335-391 (562)
115 PF05622 HOOK: HOOK protein; 98.7 8.8E-09 1.9E-13 137.7 4.7 66 1716-1781 576-645 (713)
116 COG1340 Uncharacterized archae 98.7 6.5E-05 1.4E-09 86.2 34.6 6 1640-1645 166-171 (294)
117 KOG1029|consensus 98.7 0.00019 4.1E-09 89.0 39.9 22 1746-1767 551-572 (1118)
118 PF09726 Macoilin: Transmembra 98.6 2.1E-05 4.6E-10 102.8 33.3 36 1758-1793 622-657 (697)
119 KOG0946|consensus 98.6 3.2E-05 6.9E-10 96.7 32.6 74 1649-1722 809-882 (970)
120 smart00180 EGF_Lam Laminin-typ 98.6 2.7E-08 5.9E-13 83.2 4.3 41 773-813 1-41 (46)
121 KOG0946|consensus 98.6 4.6E-05 9.9E-10 95.4 33.7 32 1620-1651 801-832 (970)
122 PRK10929 putative mechanosensi 98.6 0.00073 1.6E-08 92.2 47.9 79 1425-1507 61-139 (1109)
123 KOG1218|consensus 98.6 2.6E-06 5.6E-11 103.9 21.9 283 784-1160 9-297 (316)
124 PF05557 MAD: Mitotic checkpoi 98.6 8.5E-08 1.8E-12 128.7 8.9 17 1758-1774 566-582 (722)
125 cd00055 EGF_Lam Laminin-type e 98.6 6.7E-08 1.5E-12 82.6 4.6 44 772-815 1-44 (50)
126 KOG1029|consensus 98.5 0.00054 1.2E-08 85.1 38.7 32 1736-1767 548-579 (1118)
127 TIGR03185 DNA_S_dndD DNA sulfu 98.5 0.00058 1.3E-08 91.2 42.5 19 1780-1798 503-521 (650)
128 PF00038 Filament: Intermediat 98.5 0.00066 1.4E-08 82.6 39.5 14 1519-1532 4-17 (312)
129 KOG1219|consensus 98.5 1.3E-07 2.9E-12 125.2 7.0 120 907-1068 3860-3984(4289)
130 PF05622 HOOK: HOOK protein; 98.5 4.1E-08 9E-13 131.3 2.2 19 1180-1198 63-81 (713)
131 PF06008 Laminin_I: Laminin Do 98.5 0.00034 7.4E-09 82.7 34.8 60 1472-1531 54-113 (264)
132 COG4942 Membrane-bound metallo 98.5 0.00011 2.3E-09 88.6 30.3 35 1758-1792 210-244 (420)
133 KOG1218|consensus 98.5 5.4E-06 1.2E-10 101.1 20.2 250 832-1168 9-263 (316)
134 PF09726 Macoilin: Transmembra 98.5 0.00013 2.7E-09 95.7 33.3 66 1733-1798 590-655 (697)
135 PRK10929 putative mechanosensi 98.5 0.0026 5.6E-08 87.0 46.2 15 1786-1800 496-510 (1109)
136 PF00053 Laminin_EGF: Laminin 98.4 5.7E-08 1.2E-12 82.9 1.4 43 773-815 1-43 (49)
137 PRK11281 hypothetical protein; 98.4 0.00025 5.5E-09 96.9 36.6 55 1672-1726 197-251 (1113)
138 TIGR00618 sbcc exonuclease Sbc 98.4 0.043 9.4E-07 77.6 66.1 6 1395-1400 500-505 (1042)
139 COG4717 Uncharacterized conser 98.4 0.02 4.4E-07 73.5 65.1 13 1787-1799 819-831 (984)
140 PRK11281 hypothetical protein; 98.4 0.0014 3.1E-08 89.8 42.3 104 1425-1528 76-179 (1113)
141 KOG0243|consensus 98.4 0.034 7.3E-07 74.0 61.7 12 681-692 179-190 (1041)
142 PF15070 GOLGA2L5: Putative go 98.4 0.0026 5.6E-08 82.4 40.9 21 1769-1789 290-310 (617)
143 TIGR01612 235kDa-fam reticuloc 98.4 0.061 1.3E-06 75.9 57.4 15 115-129 81-95 (2757)
144 PF03148 Tektin: Tektin family 98.4 0.0055 1.2E-07 76.1 42.4 10 1590-1599 218-227 (384)
145 COG3883 Uncharacterized protei 98.3 0.00057 1.2E-08 77.8 29.8 35 1669-1703 129-163 (265)
146 KOG4809|consensus 98.3 0.0039 8.4E-08 75.6 37.5 35 1754-1788 524-558 (654)
147 PTZ00440 reticulocyte binding 98.3 0.11 2.3E-06 75.7 71.3 28 1502-1529 1305-1332(2722)
148 COG3096 MukB Uncharacterized p 98.3 0.032 6.9E-07 69.4 64.3 14 1439-1452 516-529 (1480)
149 PF15070 GOLGA2L5: Putative go 98.3 0.0086 1.9E-07 77.8 42.6 18 1475-1492 27-44 (617)
150 KOG4809|consensus 98.2 0.034 7.5E-07 67.7 44.2 15 1561-1575 340-354 (654)
151 PF14915 CCDC144C: CCDC144C pr 98.2 0.019 4.1E-07 65.8 38.7 44 1677-1720 217-260 (305)
152 KOG1937|consensus 98.2 0.0077 1.7E-07 71.7 36.4 42 1756-1797 474-520 (521)
153 PF04108 APG17: Autophagy prot 98.2 0.047 1E-06 68.6 49.8 89 1698-1786 293-381 (412)
154 PF12252 SidE: Dot/Icm substra 98.2 0.063 1.4E-06 69.8 49.8 32 1767-1798 1394-1425(1439)
155 COG1579 Zn-ribbon protein, pos 98.2 0.00054 1.2E-08 77.3 25.4 14 1699-1712 100-113 (239)
156 PTZ00440 reticulocyte binding 98.2 0.17 3.6E-06 73.8 65.6 24 1277-1300 989-1012(2722)
157 COG4717 Uncharacterized conser 98.2 0.067 1.5E-06 69.0 62.3 22 1233-1254 176-197 (984)
158 PF05667 DUF812: Protein of un 98.2 0.00049 1.1E-08 88.6 28.3 22 1750-1771 504-525 (594)
159 PF05911 DUF869: Plant protein 98.2 0.089 1.9E-06 69.7 62.8 20 1776-1795 737-756 (769)
160 PF05667 DUF812: Protein of un 98.2 0.0023 5E-08 82.5 33.6 19 1780-1798 572-590 (594)
161 KOG0980|consensus 98.2 0.075 1.6E-06 68.5 58.5 15 1215-1229 359-373 (980)
162 KOG1219|consensus 98.2 1.8E-06 3.8E-11 115.2 5.6 102 1023-1158 3865-3976(4289)
163 COG3883 Uncharacterized protei 98.1 0.0021 4.6E-08 73.3 29.3 38 1724-1761 159-196 (265)
164 PF14662 CCDC155: Coiled-coil 98.1 0.004 8.7E-08 67.0 28.9 30 1759-1788 159-188 (193)
165 KOG1226|consensus 98.1 9.6E-06 2.1E-10 101.9 10.6 133 790-960 478-624 (783)
166 PF03148 Tektin: Tektin family 98.1 0.021 4.6E-07 71.0 39.4 40 1759-1798 325-364 (384)
167 PF04849 HAP1_N: HAP1 N-termin 98.1 0.0065 1.4E-07 70.8 31.8 57 1694-1757 205-261 (306)
168 PF09728 Taxilin: Myosin-like 98.1 0.04 8.6E-07 66.2 39.6 16 1708-1723 215-230 (309)
169 COG4913 Uncharacterized protei 98.1 0.088 1.9E-06 66.1 49.3 70 1423-1492 385-455 (1104)
170 KOG1226|consensus 98.0 1.2E-05 2.5E-10 101.2 9.6 133 941-1115 477-624 (783)
171 KOG2685|consensus 98.0 0.018 4E-07 68.7 35.1 51 1620-1670 280-330 (421)
172 PF15619 Lebercilin: Ciliary p 98.0 0.0024 5.1E-08 71.0 26.5 18 1639-1656 68-85 (194)
173 TIGR00634 recN DNA repair prot 98.0 0.0012 2.7E-08 86.5 28.3 26 1759-1784 347-372 (563)
174 smart00283 MA Methyl-accepting 98.0 0.038 8.2E-07 65.2 38.4 11 1787-1797 246-256 (262)
175 KOG1217|consensus 98.0 0.00013 2.9E-09 94.2 19.0 222 837-1116 109-362 (487)
176 PF14662 CCDC155: Coiled-coil 98.0 0.0089 1.9E-07 64.4 28.7 38 1758-1795 151-188 (193)
177 KOG0993|consensus 98.0 0.079 1.7E-06 62.3 46.8 14 1279-1292 38-51 (542)
178 PF09789 DUF2353: Uncharacteri 98.0 0.0016 3.5E-08 76.6 24.7 158 1639-1798 72-229 (319)
179 PRK09039 hypothetical protein; 98.0 0.00063 1.4E-08 82.8 22.0 6 1620-1625 48-53 (343)
180 KOG1937|consensus 98.0 0.094 2E-06 62.8 38.4 26 1764-1789 494-519 (521)
181 PF05010 TACC: Transforming ac 97.9 0.023 4.9E-07 63.5 31.5 33 1648-1680 71-103 (207)
182 PF04108 APG17: Autophagy prot 97.9 0.15 3.3E-06 64.1 48.3 21 1605-1625 249-269 (412)
183 PRK09039 hypothetical protein; 97.9 0.0016 3.4E-08 79.4 24.4 23 1609-1631 79-101 (343)
184 PF03302 VSP: Giardia variant- 97.9 0.00032 6.8E-09 87.2 18.1 102 851-977 1-111 (397)
185 PF04849 HAP1_N: HAP1 N-termin 97.9 0.0076 1.6E-07 70.3 27.8 87 1639-1725 206-292 (306)
186 PF05010 TACC: Transforming ac 97.9 0.027 5.9E-07 62.9 30.6 40 1641-1680 71-110 (207)
187 PTZ00214 high cysteine membran 97.8 0.00095 2.1E-08 88.9 22.3 65 1107-1176 558-635 (800)
188 PF05276 SH3BP5: SH3 domain-bi 97.8 0.028 6E-07 64.2 30.7 35 1764-1798 190-224 (239)
189 PRK10869 recombination and rep 97.8 0.013 2.9E-07 76.3 32.3 23 1760-1782 343-365 (553)
190 PF09728 Taxilin: Myosin-like 97.8 0.16 3.5E-06 61.0 42.0 44 1732-1775 232-275 (309)
191 PF12252 SidE: Dot/Icm substra 97.8 0.27 5.8E-06 64.4 41.8 14 1368-1381 1103-1116(1439)
192 PF13166 AAA_13: AAA domain 97.8 0.063 1.4E-06 73.3 39.7 10 1243-1252 94-103 (712)
193 TIGR01005 eps_transp_fam exopo 97.8 0.0026 5.6E-08 86.9 26.3 27 1764-1790 375-401 (754)
194 KOG4260|consensus 97.8 3.3E-05 7.1E-10 85.1 6.2 158 945-1153 131-303 (350)
195 PRK15048 methyl-accepting chem 97.8 0.37 8E-06 63.8 62.6 25 1778-1802 489-513 (553)
196 PF13166 AAA_13: AAA domain 97.8 0.13 2.9E-06 70.2 42.3 6 1775-1780 441-446 (712)
197 PHA03247 large tegument protei 97.8 0.7 1.5E-05 66.4 54.1 52 1693-1744 1709-1760(3151)
198 PF15619 Lebercilin: Ciliary p 97.7 0.016 3.4E-07 64.5 26.7 33 1648-1680 63-95 (194)
199 PLN03188 kinesin-12 family pro 97.7 0.12 2.6E-06 69.8 38.9 34 1651-1684 1112-1145(1320)
200 cd09235 V_Alix Middle V-domain 97.7 0.11 2.5E-06 63.6 36.8 37 1608-1644 128-164 (339)
201 TIGR03007 pepcterm_ChnLen poly 97.7 0.0081 1.8E-07 78.1 28.5 28 1763-1790 353-380 (498)
202 TIGR01005 eps_transp_fam exopo 97.7 0.0039 8.4E-08 85.3 26.7 29 1757-1785 375-403 (754)
203 KOG1388|consensus 97.7 1.8E-05 4E-10 85.6 3.1 116 971-1120 47-167 (217)
204 COG0497 RecN ATPase involved i 97.7 0.028 6E-07 71.1 31.0 25 1760-1784 344-368 (557)
205 PF08317 Spc7: Spc7 kinetochor 97.7 0.032 7E-07 67.9 31.1 14 1779-1792 276-289 (325)
206 TIGR01612 235kDa-fam reticuloc 97.7 0.85 1.9E-05 65.2 69.6 26 1506-1531 1373-1398(2757)
207 PRK15041 methyl-accepting chem 97.7 0.5 1.1E-05 62.4 64.5 26 1777-1802 490-515 (554)
208 KOG2685|consensus 97.7 0.24 5.1E-06 59.6 35.8 41 1758-1798 351-391 (421)
209 PF09755 DUF2046: Uncharacteri 97.7 0.23 4.9E-06 58.1 36.5 20 1643-1662 110-129 (310)
210 PF15254 CCDC14: Coiled-coil d 97.6 0.022 4.9E-07 72.3 28.3 63 1737-1799 501-563 (861)
211 KOG1388|consensus 97.6 3.1E-05 6.8E-10 83.8 3.2 123 858-1020 43-168 (217)
212 PF06637 PV-1: PV-1 protein (P 97.6 0.26 5.7E-06 58.0 41.7 22 1468-1489 56-77 (442)
213 smart00787 Spc7 Spc7 kinetocho 97.6 0.048 1E-06 65.3 29.8 41 1710-1750 205-245 (312)
214 TIGR02977 phageshock_pspA phag 97.6 0.029 6.4E-07 64.3 27.1 7 1619-1625 39-45 (219)
215 PF09787 Golgin_A5: Golgin sub 97.6 0.099 2.1E-06 67.8 34.9 41 1756-1796 390-430 (511)
216 TIGR03007 pepcterm_ChnLen poly 97.6 0.011 2.4E-07 76.9 26.7 26 1758-1783 355-380 (498)
217 PF05276 SH3BP5: SH3 domain-bi 97.6 0.16 3.4E-06 58.2 32.1 42 1749-1790 182-223 (239)
218 PF08580 KAR9: Yeast cortical 97.6 0.094 2E-06 69.3 34.6 22 1776-1797 349-370 (683)
219 PF13949 ALIX_LYPXL_bnd: ALIX 97.6 0.19 4.1E-06 60.8 35.3 40 1607-1646 80-119 (296)
220 TIGR00634 recN DNA repair prot 97.6 0.011 2.3E-07 77.8 26.3 18 1759-1776 354-371 (563)
221 PRK10698 phage shock protein P 97.6 0.032 6.9E-07 63.8 26.6 25 1763-1788 193-217 (222)
222 PF09755 DUF2046: Uncharacteri 97.6 0.31 6.6E-06 57.1 37.9 20 1664-1683 182-201 (310)
223 PF13851 GAS: Growth-arrest sp 97.6 0.077 1.7E-06 59.7 29.0 13 1592-1604 29-41 (201)
224 KOG1217|consensus 97.6 0.0019 4E-08 83.5 18.9 130 790-955 152-306 (487)
225 PRK10698 phage shock protein P 97.5 0.037 8E-07 63.3 26.5 9 1592-1600 15-23 (222)
226 PF15066 CAGE1: Cancer-associa 97.5 0.09 1.9E-06 63.3 29.9 16 1672-1687 416-431 (527)
227 cd09238 V_Alix_like_1 Protein- 97.5 0.29 6.3E-06 60.0 36.0 37 1608-1644 131-167 (339)
228 cd09236 V_AnPalA_UmRIM20_like 97.5 0.16 3.6E-06 62.6 34.1 38 1607-1644 130-167 (353)
229 TIGR01843 type_I_hlyD type I s 97.5 0.015 3.2E-07 74.1 25.7 15 1777-1791 251-265 (423)
230 KOG1850|consensus 97.5 0.33 7.1E-06 55.8 44.0 39 1759-1797 293-331 (391)
231 KOG4302|consensus 97.5 0.73 1.6E-05 59.8 39.6 43 1498-1540 160-202 (660)
232 KOG2129|consensus 97.5 0.13 2.8E-06 60.7 29.9 23 1701-1723 252-274 (552)
233 PF10168 Nup88: Nuclear pore c 97.5 0.0047 1E-07 81.8 21.1 29 1766-1794 686-714 (717)
234 PF12795 MscS_porin: Mechanose 97.5 0.023 5E-07 66.2 24.6 111 1587-1697 21-136 (240)
235 PF06548 Kinesin-related: Kine 97.5 0.49 1.1E-05 57.3 37.6 33 1651-1683 342-374 (488)
236 PRK10869 recombination and rep 97.4 0.046 1E-06 71.3 29.2 18 1758-1775 348-365 (553)
237 PF12795 MscS_porin: Mechanose 97.4 0.03 6.5E-07 65.3 24.7 98 1586-1683 34-136 (240)
238 KOG0982|consensus 97.4 0.38 8.3E-06 57.5 32.9 6 1153-1158 57-62 (502)
239 KOG0249|consensus 97.4 0.013 2.9E-07 73.1 22.2 43 1736-1778 215-257 (916)
240 PF15397 DUF4618: Domain of un 97.4 0.32 6.9E-06 56.0 31.8 33 1763-1795 191-223 (258)
241 smart00787 Spc7 Spc7 kinetocho 97.4 0.11 2.3E-06 62.5 29.5 11 1584-1594 74-84 (312)
242 PF10168 Nup88: Nuclear pore c 97.4 0.006 1.3E-07 80.9 20.9 23 1765-1787 692-714 (717)
243 TIGR03017 EpsF chain length de 97.4 0.032 6.9E-07 71.6 27.3 27 1764-1790 341-367 (444)
244 KOG4438|consensus 97.4 0.55 1.2E-05 56.6 45.5 7 1525-1531 158-164 (446)
245 PF13851 GAS: Growth-arrest sp 97.4 0.15 3.1E-06 57.6 28.9 27 1604-1630 48-74 (201)
246 KOG2008|consensus 97.4 0.3 6.5E-06 55.7 30.6 9 1788-1796 220-228 (426)
247 cd07653 F-BAR_CIP4-like The F- 97.4 0.43 9.3E-06 56.2 34.5 44 1657-1700 109-152 (251)
248 KOG4572|consensus 97.4 0.81 1.7E-05 58.2 52.8 18 1363-1380 963-980 (1424)
249 TIGR01843 type_I_hlyD type I s 97.4 0.022 4.8E-07 72.5 25.5 25 1765-1789 246-270 (423)
250 KOG2991|consensus 97.4 0.22 4.7E-06 55.4 28.4 40 1759-1798 272-311 (330)
251 cd09234 V_HD-PTP_like Protein- 97.4 0.23 5.1E-06 60.9 32.9 38 1607-1644 127-164 (337)
252 PF09787 Golgin_A5: Golgin sub 97.4 0.55 1.2E-05 61.0 37.9 42 1741-1782 389-430 (511)
253 KOG2129|consensus 97.4 0.11 2.4E-06 61.2 27.8 17 1667-1683 208-224 (552)
254 PLN03229 acetyl-coenzyme A car 97.4 0.096 2.1E-06 67.5 29.7 43 1212-1254 99-142 (762)
255 KOG1853|consensus 97.4 0.057 1.2E-06 59.5 23.7 46 1748-1797 137-182 (333)
256 KOG1853|consensus 97.3 0.089 1.9E-06 58.1 24.8 18 1737-1754 164-181 (333)
257 KOG0992|consensus 97.3 0.72 1.6E-05 56.2 49.3 40 1757-1796 480-519 (613)
258 TIGR03017 EpsF chain length de 97.3 0.04 8.7E-07 70.6 26.7 27 1758-1784 342-368 (444)
259 KOG1899|consensus 97.3 0.021 4.5E-07 70.2 21.8 75 1605-1679 140-214 (861)
260 PLN02939 transferase, transfer 97.3 0.082 1.8E-06 71.0 29.2 23 1644-1666 262-284 (977)
261 PLN02939 transferase, transfer 97.3 0.064 1.4E-06 72.0 28.2 28 1769-1796 373-400 (977)
262 PF09789 DUF2353: Uncharacteri 97.3 0.074 1.6E-06 63.0 25.1 32 1633-1664 80-111 (319)
263 TIGR02977 phageshock_pspA phag 97.3 0.11 2.5E-06 59.5 26.4 10 1777-1786 206-215 (219)
264 PF04012 PspA_IM30: PspA/IM30 97.3 0.078 1.7E-06 61.1 25.4 12 1614-1625 33-44 (221)
265 PF06785 UPF0242: Uncharacteri 97.3 0.068 1.5E-06 61.5 23.6 33 1639-1671 85-117 (401)
266 cd08915 V_Alix_like Protein-in 97.3 0.91 2E-05 56.0 36.2 38 1607-1644 129-166 (342)
267 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.3 0.029 6.3E-07 58.9 19.7 9 1769-1777 109-117 (132)
268 PTZ00214 high cysteine membran 97.3 0.0085 1.8E-07 80.2 19.5 95 893-1026 559-665 (800)
269 COG0497 RecN ATPase involved i 97.2 0.16 3.5E-06 64.5 29.2 20 1530-1549 104-123 (557)
270 PF15254 CCDC14: Coiled-coil d 97.2 0.12 2.7E-06 65.9 27.8 22 1558-1579 355-376 (861)
271 PF01442 Apolipoprotein: Apoli 97.2 0.12 2.6E-06 58.2 26.2 19 1779-1797 177-195 (202)
272 PF08580 KAR9: Yeast cortical 97.2 0.88 1.9E-05 60.4 37.0 28 1552-1579 185-212 (683)
273 COG1842 PspA Phage shock prote 97.2 0.075 1.6E-06 60.5 23.6 22 1695-1716 113-134 (225)
274 PF05384 DegS: Sensor protein 97.2 0.12 2.7E-06 55.3 23.4 31 1692-1722 81-111 (159)
275 PF04912 Dynamitin: Dynamitin 97.2 0.06 1.3E-06 67.4 25.0 62 1739-1800 324-385 (388)
276 KOG4360|consensus 97.2 0.071 1.5E-06 64.7 23.8 51 1692-1742 202-252 (596)
277 PF12777 MT: Microtubule-bindi 97.2 0.06 1.3E-06 66.2 24.3 54 1486-1549 73-126 (344)
278 PF03302 VSP: Giardia variant- 97.2 0.02 4.2E-07 71.5 20.2 90 801-905 37-135 (397)
279 KOG4260|consensus 97.1 0.00033 7.2E-09 77.4 3.9 103 1051-1178 132-239 (350)
280 PRK09793 methyl-accepting prot 97.1 1.8 4E-05 56.9 63.3 23 1780-1802 489-511 (533)
281 PRK15048 methyl-accepting chem 97.1 1.9 4.1E-05 57.1 62.6 11 1779-1789 497-507 (553)
282 KOG1214|consensus 97.1 0.0043 9.4E-08 77.9 13.6 221 886-1152 708-948 (1289)
283 PF13949 ALIX_LYPXL_bnd: ALIX 97.1 0.34 7.3E-06 58.6 30.2 34 1758-1791 255-288 (296)
284 PHA03247 large tegument protei 97.1 3.5 7.7E-05 59.9 50.1 11 64-74 72-82 (3151)
285 KOG1899|consensus 97.1 0.044 9.6E-07 67.5 21.6 27 1758-1784 274-300 (861)
286 cd08915 V_Alix_like Protein-in 97.1 0.73 1.6E-05 56.9 33.2 13 1790-1802 309-321 (342)
287 KOG0992|consensus 97.1 1.3 2.7E-05 54.2 44.4 17 1779-1795 403-419 (613)
288 KOG0244|consensus 97.1 2.1 4.6E-05 56.8 44.9 37 1194-1230 308-346 (913)
289 PF15397 DUF4618: Domain of un 97.1 0.9 1.9E-05 52.4 32.0 50 1750-1799 185-234 (258)
290 KOG4286|consensus 97.1 0.45 9.8E-06 60.4 30.0 36 1491-1526 78-113 (966)
291 KOG0993|consensus 97.1 1.1 2.5E-05 53.1 46.5 28 1643-1670 349-376 (542)
292 KOG4360|consensus 97.0 0.2 4.3E-06 61.1 25.8 79 1653-1731 219-297 (596)
293 PF12777 MT: Microtubule-bindi 97.0 0.091 2E-06 64.6 24.0 16 1288-1303 10-25 (344)
294 COG3206 GumC Uncharacterized p 97.0 0.23 4.9E-06 63.9 28.4 46 1676-1721 287-332 (458)
295 KOG2008|consensus 97.0 1.1 2.3E-05 51.5 30.8 16 1752-1767 191-206 (426)
296 PF06818 Fez1: Fez1; InterPro 97.0 0.14 3E-06 56.4 21.9 22 1706-1727 135-156 (202)
297 PF05816 TelA: Toxic anion res 96.9 1.7 3.7E-05 53.3 41.0 17 1774-1790 311-327 (333)
298 PF01540 Lipoprotein_7: Adhesi 96.9 1 2.2E-05 50.5 30.2 18 1557-1574 61-78 (353)
299 PLN03229 acetyl-coenzyme A car 96.9 0.39 8.5E-06 62.2 28.6 15 1439-1453 432-446 (762)
300 PTZ00332 paraflagellar rod pro 96.9 1.7 3.8E-05 53.1 51.2 10 1418-1427 207-216 (589)
301 KOG4807|consensus 96.9 1.4 3.1E-05 51.8 32.0 23 1554-1576 240-262 (593)
302 cd09234 V_HD-PTP_like Protein- 96.9 0.41 8.9E-06 58.8 28.3 17 1787-1803 301-317 (337)
303 PF11172 DUF2959: Protein of u 96.9 0.32 6.9E-06 53.2 23.6 25 1769-1793 167-191 (201)
304 TIGR01000 bacteriocin_acc bact 96.9 0.1 2.2E-06 67.0 23.8 27 1769-1795 288-314 (457)
305 PF13870 DUF4201: Domain of un 96.9 0.38 8.2E-06 53.4 25.1 29 1767-1795 147-175 (177)
306 KOG0804|consensus 96.8 0.044 9.5E-07 65.7 18.1 11 1172-1182 231-241 (493)
307 KOG4302|consensus 96.8 2.9 6.3E-05 54.5 36.9 15 1438-1452 70-84 (660)
308 KOG4438|consensus 96.8 1.9 4.1E-05 52.2 43.8 22 1553-1574 238-259 (446)
309 KOG1214|consensus 96.8 0.0071 1.5E-07 76.1 12.0 54 940-1020 807-860 (1289)
310 PF10481 CENP-F_N: Cenp-F N-te 96.8 0.09 2E-06 59.1 18.9 14 1783-1796 289-302 (307)
311 TIGR01000 bacteriocin_acc bact 96.8 0.15 3.3E-06 65.4 24.2 26 1763-1788 289-314 (457)
312 cd09237 V_ScBro1_like Protein- 96.8 2.5 5.4E-05 52.5 35.5 38 1607-1644 124-161 (356)
313 PF14073 Cep57_CLD: Centrosome 96.8 0.19 4.1E-06 54.1 20.3 49 1740-1788 123-171 (178)
314 KOG4460|consensus 96.7 0.21 4.5E-06 61.1 22.6 30 1765-1794 709-738 (741)
315 PF15294 Leu_zip: Leucine zipp 96.7 0.75 1.6E-05 53.4 26.2 14 1558-1571 32-45 (278)
316 KOG4677|consensus 96.7 2.3 5E-05 51.4 35.1 15 1777-1791 506-520 (554)
317 PRK15041 methyl-accepting chem 96.7 4 8.7E-05 54.0 62.9 13 1778-1790 498-510 (554)
318 KOG1850|consensus 96.7 1.8 4E-05 50.0 42.2 38 1752-1789 293-330 (391)
319 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.7 0.24 5.2E-06 52.1 20.3 28 1768-1795 101-128 (132)
320 KOG0244|consensus 96.6 0.4 8.6E-06 63.2 26.0 30 1763-1792 637-666 (913)
321 PF06785 UPF0242: Uncharacteri 96.6 0.4 8.6E-06 55.5 22.9 61 1651-1711 111-171 (401)
322 PF10481 CENP-F_N: Cenp-F N-te 96.6 0.12 2.7E-06 58.1 18.5 86 1634-1719 41-126 (307)
323 PF00754 F5_F8_type_C: F5/8 ty 96.6 0.0031 6.8E-08 65.4 6.1 67 97-169 14-84 (129)
324 KOG2991|consensus 96.6 1.4 3E-05 49.3 25.9 61 1729-1789 249-309 (330)
325 cd07648 F-BAR_FCHO The F-BAR ( 96.6 2.5 5.5E-05 50.0 30.9 6 1795-1800 240-245 (261)
326 KOG4787|consensus 96.6 0.35 7.6E-06 59.4 23.0 20 1441-1460 464-483 (852)
327 COG4913 Uncharacterized protei 96.6 4 8.6E-05 52.1 50.8 17 1380-1396 445-461 (1104)
328 PF04094 DUF390: Protein of un 96.5 4.2 9.1E-05 52.2 35.9 23 1770-1792 713-735 (828)
329 COG2433 Uncharacterized conser 96.5 0.085 1.8E-06 65.9 18.1 24 1619-1642 346-369 (652)
330 PF14073 Cep57_CLD: Centrosome 96.5 0.95 2.1E-05 49.0 23.5 10 1595-1604 9-18 (178)
331 COG2433 Uncharacterized conser 96.5 0.21 4.5E-06 62.6 21.2 10 1539-1548 301-310 (652)
332 KOG3595|consensus 96.5 2.5 5.4E-05 61.5 35.5 45 1471-1515 774-818 (1395)
333 PF08614 ATG16: Autophagy prot 96.5 0.023 5E-07 63.9 12.1 110 1690-1799 76-185 (194)
334 PRK15374 pathogenicity island 96.4 4.2 9.1E-05 50.9 32.8 282 1500-1793 20-312 (593)
335 PF10212 TTKRSYEDQ: Predicted 96.4 4.5 9.7E-05 50.9 38.8 60 1689-1748 421-480 (518)
336 PF11172 DUF2959: Protein of u 96.4 0.65 1.4E-05 50.9 21.6 23 1762-1784 167-189 (201)
337 PF10234 Cluap1: Clusterin-ass 96.4 0.7 1.5E-05 53.7 23.3 85 1697-1781 171-255 (267)
338 cd07655 F-BAR_PACSIN The F-BAR 96.4 1.9 4.2E-05 50.9 27.8 15 1749-1763 205-219 (258)
339 KOG0163|consensus 96.4 5.1 0.00011 51.2 32.6 12 1521-1532 776-787 (1259)
340 cd07676 F-BAR_FBP17 The F-BAR 96.4 3.2 6.8E-05 48.8 33.3 49 1748-1796 200-249 (253)
341 KOG3647|consensus 96.3 1 2.2E-05 50.6 23.1 17 1661-1677 127-143 (338)
342 PF00769 ERM: Ezrin/radixin/mo 96.3 0.2 4.3E-06 58.4 18.9 18 1646-1663 12-29 (246)
343 PF06818 Fez1: Fez1; InterPro 96.3 1.1 2.4E-05 49.6 23.1 19 1612-1630 32-50 (202)
344 PF10498 IFT57: Intra-flagella 96.3 0.2 4.4E-06 61.2 19.2 38 1690-1727 282-319 (359)
345 cd09236 V_AnPalA_UmRIM20_like 96.3 3.6 7.8E-05 50.9 30.5 16 1787-1802 317-332 (353)
346 smart00806 AIP3 Actin interact 96.2 3.8 8.2E-05 50.3 29.1 99 1696-1794 218-325 (426)
347 PHA03246 large tegument protei 96.2 13 0.00027 53.9 53.2 54 115-172 198-256 (3095)
348 KOG3958|consensus 96.2 3.5 7.5E-05 47.3 27.4 13 1614-1626 246-258 (371)
349 PF04912 Dynamitin: Dynamitin 96.2 1.3 2.8E-05 55.7 26.3 13 1440-1452 91-103 (388)
350 smart00051 DSL delta serrate l 96.1 0.0049 1.1E-07 55.3 3.5 22 1136-1158 42-63 (63)
351 PF14643 DUF4455: Domain of un 96.1 6.8 0.00015 50.5 52.3 7 1539-1545 125-131 (473)
352 cd07664 BAR_SNX2 The Bin/Amphi 96.1 3.8 8.3E-05 47.4 29.2 13 1519-1531 50-62 (234)
353 PF14992 TMCO5: TMCO5 family 96.1 0.18 3.9E-06 58.2 16.6 22 1595-1616 23-44 (280)
354 PF00769 ERM: Ezrin/radixin/mo 96.1 0.29 6.4E-06 57.0 18.8 46 1616-1661 10-55 (246)
355 PF04949 Transcrip_act: Transc 96.1 1 2.3E-05 46.4 19.8 27 1693-1719 96-122 (159)
356 PF14817 HAUS5: HAUS augmin-li 96.1 8.1 0.00018 50.8 38.6 24 1430-1453 80-103 (632)
357 cd09235 V_Alix Middle V-domain 96.1 5.6 0.00012 49.0 33.4 13 1556-1568 53-65 (339)
358 KOG0810|consensus 96.1 1.6 3.4E-05 52.0 24.7 25 1559-1583 33-57 (297)
359 cd00176 SPEC Spectrin repeats, 96.0 1.1 2.4E-05 50.6 23.3 10 1781-1790 188-197 (213)
360 KOG4687|consensus 96.0 3.6 7.9E-05 46.4 27.7 42 1637-1678 88-129 (389)
361 PF15294 Leu_zip: Leucine zipp 96.0 2.4 5.2E-05 49.4 25.2 10 1573-1582 30-39 (278)
362 cd07653 F-BAR_CIP4-like The F- 96.0 4.7 0.0001 47.4 29.3 25 1559-1583 5-29 (251)
363 PF08614 ATG16: Autophagy prot 95.9 0.095 2.1E-06 59.0 13.5 44 1633-1676 96-139 (194)
364 KOG4286|consensus 95.9 8.3 0.00018 49.7 31.0 49 1660-1708 199-247 (966)
365 PF10234 Cluap1: Clusterin-ass 95.9 1.7 3.7E-05 50.6 23.3 86 1689-1774 177-262 (267)
366 KOG0163|consensus 95.9 8.3 0.00018 49.5 30.2 12 1637-1648 873-884 (1259)
367 PF09325 Vps5: Vps5 C terminal 95.9 4.9 0.00011 46.7 29.1 23 1557-1579 22-44 (236)
368 PHA03332 membrane glycoprotein 95.9 0.51 1.1E-05 62.1 20.6 159 1619-1805 854-1012(1328)
369 PF04949 Transcrip_act: Transc 95.8 1.6 3.4E-05 45.2 19.4 22 1696-1717 85-106 (159)
370 KOG1103|consensus 95.7 5.6 0.00012 46.3 29.9 28 1763-1790 264-291 (561)
371 cd00176 SPEC Spectrin repeats, 95.7 1.4 3E-05 49.7 22.3 16 1557-1572 31-46 (213)
372 smart00051 DSL delta serrate l 95.7 0.0098 2.1E-07 53.4 3.3 49 1006-1060 14-63 (63)
373 COG4192 Signal transduction hi 95.6 8 0.00017 47.4 45.6 27 1467-1493 157-183 (673)
374 COG5022 Myosin heavy chain [Cy 95.6 16 0.00036 51.1 34.1 8 1561-1568 812-819 (1463)
375 PRK09841 cryptic autophosphory 95.6 0.45 9.7E-06 64.7 20.5 13 1610-1622 273-285 (726)
376 COG3853 TelA Uncharacterized p 95.6 8 0.00017 47.1 39.9 50 1748-1797 332-381 (386)
377 KOG4807|consensus 95.6 6.9 0.00015 46.4 30.9 65 1737-1801 519-587 (593)
378 PF10212 TTKRSYEDQ: Predicted 95.6 9.7 0.00021 48.1 39.4 39 1592-1630 422-460 (518)
379 KOG4403|consensus 95.6 1.3 2.8E-05 53.0 20.7 10 1651-1660 314-323 (575)
380 PF15358 TSKS: Testis-specific 95.6 1.5 3.3E-05 52.0 21.1 83 1705-1787 294-376 (558)
381 KOG0040|consensus 95.6 17 0.00036 50.5 60.1 8 1372-1379 437-444 (2399)
382 PF12325 TMF_TATA_bd: TATA ele 95.5 0.48 1E-05 48.5 15.2 34 1765-1798 82-115 (120)
383 KOG2196|consensus 95.5 1.7 3.8E-05 48.7 20.4 18 1659-1676 140-157 (254)
384 PTZ00464 SNF-7-like protein; P 95.5 1.3 2.9E-05 50.1 20.1 13 1776-1788 161-173 (211)
385 COG5283 Phage-related tail pro 95.5 17 0.00036 50.1 50.6 502 1245-1804 22-565 (1213)
386 PF05478 Prominin: Prominin; 95.5 17 0.00038 50.2 39.8 40 1478-1517 247-286 (806)
387 PF15290 Syntaphilin: Golgi-lo 95.5 0.43 9.3E-06 54.2 15.7 17 1697-1713 119-135 (305)
388 PF06637 PV-1: PV-1 protein (P 95.4 8 0.00017 46.1 43.6 30 1761-1790 352-381 (442)
389 PF05478 Prominin: Prominin; 95.4 5.1 0.00011 55.3 29.6 7 1408-1414 120-126 (806)
390 PF03915 AIP3: Actin interacti 95.4 0.65 1.4E-05 57.8 18.9 295 1486-1783 76-399 (424)
391 PF01540 Lipoprotein_7: Adhesi 95.4 6.2 0.00014 44.5 33.0 21 1738-1758 278-298 (353)
392 PF04100 Vps53_N: Vps53-like, 95.4 1 2.2E-05 56.2 20.6 11 1669-1679 66-76 (383)
393 PRK15178 Vi polysaccharide exp 95.4 0.71 1.5E-05 57.4 19.0 7 1713-1719 325-331 (434)
394 KOG3647|consensus 95.4 4.7 0.0001 45.6 23.0 25 1719-1743 136-160 (338)
395 PF14992 TMCO5: TMCO5 family 95.3 0.59 1.3E-05 54.2 16.6 36 1740-1776 143-178 (280)
396 smart00806 AIP3 Actin interact 95.3 10 0.00023 46.7 27.6 17 1672-1688 222-238 (426)
397 PF06548 Kinesin-related: Kine 95.3 11 0.00023 46.4 41.3 40 1755-1794 431-470 (488)
398 KOG2220|consensus 95.3 5 0.00011 53.8 27.6 36 1608-1643 477-512 (714)
399 PF05278 PEARLI-4: Arabidopsis 95.2 1.3 2.7E-05 51.2 18.9 54 1642-1695 196-249 (269)
400 cd07666 BAR_SNX7 The Bin/Amphi 95.2 3.6 7.8E-05 47.6 22.7 173 1627-1802 32-207 (243)
401 cd07680 F-BAR_PACSIN1 The F-BA 95.1 9.3 0.0002 44.8 30.1 19 1563-1581 9-27 (258)
402 TIGR02302 aProt_lowcomp conser 95.1 7.3 0.00016 52.8 28.2 20 1557-1576 475-494 (851)
403 PF15290 Syntaphilin: Golgi-lo 95.1 0.67 1.5E-05 52.7 15.8 107 1641-1747 63-169 (305)
404 PF04582 Reo_sigmaC: Reovirus 95.1 0.035 7.7E-07 65.3 6.2 138 1634-1771 16-153 (326)
405 PF04740 LXG: LXG domain of WX 95.1 4.4 9.6E-05 46.0 23.3 181 1605-1791 4-192 (204)
406 PF13779 DUF4175: Domain of un 95.0 12 0.00026 50.9 30.4 295 1500-1798 388-742 (820)
407 cd07665 BAR_SNX1 The Bin/Amphi 95.0 8.8 0.00019 44.3 30.4 218 1542-1763 3-225 (234)
408 PF03915 AIP3: Actin interacti 95.0 1.3 2.8E-05 55.2 19.7 221 1549-1770 68-321 (424)
409 cd07664 BAR_SNX2 The Bin/Amphi 95.0 9.5 0.00021 44.2 30.5 216 1561-1791 3-225 (234)
410 COG5074 t-SNARE complex subuni 94.9 6.3 0.00014 43.9 22.1 224 1483-1710 24-249 (280)
411 PF05546 She9_MDM33: She9 / Md 94.9 3.7 7.9E-05 45.6 20.5 138 1642-1779 5-149 (207)
412 COG3524 KpsE Capsule polysacch 94.9 0.9 2E-05 52.2 16.3 162 1622-1797 150-313 (372)
413 PHA03246 large tegument protei 94.9 33 0.00072 50.1 47.9 468 1224-1756 1353-1944(3095)
414 KOG2196|consensus 94.9 5.2 0.00011 45.1 21.6 152 1642-1793 74-247 (254)
415 KOG3958|consensus 94.9 9.7 0.00021 43.9 27.5 238 1565-1803 93-370 (371)
416 PF11559 ADIP: Afadin- and alp 94.9 1.9 4E-05 46.6 18.4 121 1639-1769 31-151 (151)
417 PRK11519 tyrosine kinase; Prov 94.9 1.3 2.8E-05 60.3 21.2 154 1635-1792 240-397 (719)
418 PF05278 PEARLI-4: Arabidopsis 94.9 1.7 3.7E-05 50.2 18.6 133 1575-1708 128-262 (269)
419 PF10368 YkyA: Putative cell-w 94.9 2.2 4.7E-05 48.3 19.5 179 1614-1794 14-193 (204)
420 PF05262 Borrelia_P83: Borreli 94.8 1.5 3.2E-05 55.5 19.8 162 1637-1800 183-346 (489)
421 PF10146 zf-C4H2: Zinc finger- 94.8 0.9 1.9E-05 52.1 16.5 102 1582-1683 3-105 (230)
422 cd00057 FA58C Substituted upda 94.8 0.047 1E-06 58.0 6.1 64 98-168 24-92 (143)
423 PF05262 Borrelia_P83: Borreli 94.8 1.7 3.7E-05 54.9 20.3 170 1609-1780 183-354 (489)
424 COG5283 Phage-related tail pro 94.8 25 0.00055 48.5 54.4 541 1221-1794 19-627 (1213)
425 cd07667 BAR_SNX30 The Bin/Amph 94.8 7.5 0.00016 44.8 23.7 154 1646-1802 51-204 (240)
426 PF04740 LXG: LXG domain of WX 94.8 4.9 0.00011 45.7 22.8 179 1619-1797 4-191 (204)
427 KOG1666|consensus 94.8 6.3 0.00014 43.7 21.7 187 1611-1799 3-197 (220)
428 PF05546 She9_MDM33: She9 / Md 94.8 1.7 3.6E-05 48.2 17.5 128 1670-1802 5-137 (207)
429 KOG4687|consensus 94.7 6.8 0.00015 44.3 22.2 191 1605-1795 10-204 (389)
430 PF09738 DUF2051: Double stran 94.7 3.9 8.5E-05 48.8 22.0 158 1634-1791 79-302 (302)
431 KOG4657|consensus 94.7 3.9 8.5E-05 45.3 19.9 141 1663-1803 11-155 (246)
432 PF05816 TelA: Toxic anion res 94.7 15 0.00032 45.2 39.7 310 1421-1761 22-333 (333)
433 PF14988 DUF4515: Domain of un 94.7 9.7 0.00021 43.2 29.2 182 1613-1794 6-199 (206)
434 cd07652 F-BAR_Rgd1 The F-BAR ( 94.7 9.6 0.00021 44.3 24.8 213 1578-1804 7-227 (234)
435 PF09304 Cortex-I_coil: Cortex 94.7 2.3 5.1E-05 41.9 16.2 107 1603-1709 1-107 (107)
436 KOG1655|consensus 94.7 2 4.3E-05 46.5 17.2 158 1615-1789 16-175 (218)
437 PF10368 YkyA: Putative cell-w 94.6 3.8 8.2E-05 46.4 20.7 176 1600-1777 14-197 (204)
438 PTZ00464 SNF-7-like protein; P 94.6 2.7 5.8E-05 47.7 19.4 144 1644-1789 16-174 (211)
439 COG3524 KpsE Capsule polysacch 94.6 0.79 1.7E-05 52.7 15.0 173 1598-1775 150-326 (372)
440 cd07627 BAR_Vps5p The Bin/Amph 94.6 11 0.00024 43.3 31.4 194 1575-1770 6-209 (216)
441 cd07596 BAR_SNX The Bin/Amphip 94.6 9.7 0.00021 43.5 24.9 180 1618-1801 4-188 (218)
442 PF06009 Laminin_II: Laminin D 94.6 0.0096 2.1E-07 62.9 0.0 106 1596-1701 2-110 (138)
443 PF10146 zf-C4H2: Zinc finger- 94.6 1.1 2.4E-05 51.3 16.5 102 1589-1690 3-105 (230)
444 cd07643 I-BAR_IMD_MIM Inverse 94.6 10 0.00022 42.8 25.3 207 1578-1791 10-220 (231)
445 cd07665 BAR_SNX1 The Bin/Amphi 94.5 12 0.00025 43.3 29.3 221 1561-1791 3-225 (234)
446 cd07648 F-BAR_FCHO The F-BAR ( 94.5 13 0.00029 43.9 29.3 220 1578-1800 7-232 (261)
447 PF04582 Reo_sigmaC: Reovirus 94.5 0.059 1.3E-06 63.5 6.2 150 1556-1708 4-153 (326)
448 cd09237 V_ScBro1_like Protein- 94.5 17 0.00038 45.1 35.9 303 1486-1790 4-351 (356)
449 PF13805 Pil1: Eisosome compon 94.5 2.6 5.6E-05 49.1 19.0 138 1646-1787 57-194 (271)
450 TIGR02132 phaR_Bmeg polyhydrox 94.5 3.1 6.6E-05 44.5 17.7 157 1501-1657 14-175 (189)
451 PF15035 Rootletin: Ciliary ro 94.5 3.3 7.1E-05 45.9 19.2 172 1617-1795 1-182 (182)
452 TIGR02971 heterocyst_DevB ABC 94.4 2.3 5E-05 52.2 20.4 143 1609-1754 53-203 (327)
453 PF07794 DUF1633: Protein of u 94.4 0.69 1.5E-05 55.8 14.6 212 1554-1771 504-725 (790)
454 PF13779 DUF4175: Domain of un 94.4 5.4 0.00012 54.2 24.7 303 1482-1790 387-741 (820)
455 PF15358 TSKS: Testis-specific 94.3 16 0.00034 44.0 31.3 382 1242-1665 108-530 (558)
456 TIGR02971 heterocyst_DevB ABC 94.3 2.1 4.5E-05 52.6 19.7 145 1652-1796 54-203 (327)
457 cd07675 F-BAR_FNBP1L The F-BAR 94.3 14 0.0003 43.2 31.1 229 1559-1794 5-242 (252)
458 PF04163 Tht1: Tht1-like nucle 94.3 23 0.0005 45.8 40.3 288 1497-1793 154-448 (544)
459 KOG0972|consensus 94.3 3.8 8.2E-05 46.9 19.1 173 1611-1790 188-367 (384)
460 PRK15178 Vi polysaccharide exp 94.3 2 4.3E-05 53.6 18.8 167 1577-1743 213-385 (434)
461 KOG4637|consensus 94.3 6.2 0.00013 46.8 21.3 151 1648-1798 134-295 (464)
462 PF09731 Mitofilin: Mitochondr 94.2 13 0.00029 49.4 28.3 229 1565-1793 205-441 (582)
463 PF07889 DUF1664: Protein of u 94.2 0.93 2E-05 46.6 13.2 87 1635-1724 39-125 (126)
464 cd09238 V_Alix_like_1 Protein- 94.1 19 0.00042 44.3 35.8 278 1493-1777 4-335 (339)
465 PF12661 hEGF: Human growth fa 94.1 0.019 4.2E-07 34.5 0.6 13 943-955 1-13 (13)
466 TIGR03794 NHPM_micro_HlyD NHPM 94.1 3.3 7.2E-05 52.7 21.5 162 1642-1803 92-258 (421)
467 KOG0811|consensus 94.1 16 0.00034 43.0 25.7 205 1594-1801 18-237 (269)
468 KOG1655|consensus 94.1 4.7 0.0001 43.7 18.3 150 1555-1705 15-175 (218)
469 KOG1854|consensus 94.1 25 0.00054 45.3 37.9 288 1501-1799 150-461 (657)
470 cd07674 F-BAR_FCHO1 The F-BAR 94.1 16 0.00036 43.2 30.5 230 1561-1801 7-240 (261)
471 PHA03332 membrane glycoprotein 94.0 7.2 0.00016 52.1 23.4 165 1580-1744 853-1018(1328)
472 PF02841 GBP_C: Guanylate-bind 94.0 19 0.0004 43.6 31.3 239 1542-1785 14-297 (297)
473 PF08702 Fib_alpha: Fibrinogen 94.0 4.2 9E-05 43.5 18.1 110 1675-1786 22-132 (146)
474 PTZ00332 paraflagellar rod pro 94.0 21 0.00046 44.2 47.6 452 1192-1695 108-566 (589)
475 COG4487 Uncharacterized protei 94.0 21 0.00047 44.1 28.0 188 1616-1806 33-225 (438)
476 KOG2891|consensus 93.9 6 0.00013 44.7 19.6 157 1635-1792 277-434 (445)
477 KOG0288|consensus 93.9 2.2 4.8E-05 51.2 17.2 128 1648-1775 1-128 (459)
478 PF12072 DUF3552: Domain of un 93.9 14 0.00031 41.8 26.7 176 1626-1804 21-199 (201)
479 PF04100 Vps53_N: Vps53-like, 93.9 4.2 9E-05 50.8 20.9 175 1577-1759 5-179 (383)
480 PHA02607 wac fibritin; Provisi 93.8 1.6 3.5E-05 53.8 16.6 207 1587-1795 49-299 (454)
481 COG4026 Uncharacterized protei 93.8 1.2 2.6E-05 48.8 13.6 105 1612-1718 104-214 (290)
482 PF08702 Fib_alpha: Fibrinogen 93.7 4.5 9.8E-05 43.2 17.9 112 1688-1801 22-133 (146)
483 KOG0972|consensus 93.7 7.9 0.00017 44.4 20.2 216 1540-1769 151-367 (384)
484 PF11802 CENP-K: Centromere-as 93.7 3.1 6.7E-05 48.0 17.4 170 1623-1802 14-184 (268)
485 TIGR03794 NHPM_micro_HlyD NHPM 93.7 4.6 9.9E-05 51.5 21.6 158 1621-1782 92-251 (421)
486 KOG2180|consensus 93.7 29 0.00063 45.1 27.2 231 1563-1794 23-278 (793)
487 KOG3771|consensus 93.7 8 0.00017 47.9 21.9 192 1600-1798 33-230 (460)
488 PF05266 DUF724: Protein of un 93.7 5.1 0.00011 44.7 18.8 132 1541-1672 51-185 (190)
489 PRK10884 SH3 domain-containing 93.6 0.9 2E-05 51.3 13.1 80 1644-1726 91-170 (206)
490 COG3352 FlaC Putative archaeal 93.6 0.79 1.7E-05 47.6 11.4 138 1619-1756 3-141 (157)
491 KOG1854|consensus 93.6 29 0.00064 44.7 36.7 313 1473-1797 150-486 (657)
492 PF03999 MAP65_ASE1: Microtubu 93.6 0.2 4.3E-06 66.6 9.3 368 1423-1798 20-410 (619)
493 PRK12705 hypothetical protein; 93.6 16 0.00034 47.1 25.3 165 1585-1757 25-189 (508)
494 KOG3215|consensus 93.5 9.1 0.0002 42.0 19.5 171 1627-1799 35-205 (222)
495 COG3264 Small-conductance mech 93.5 3.1 6.7E-05 55.1 19.3 196 1600-1803 11-218 (835)
496 KOG0811|consensus 93.5 20 0.00043 42.2 25.1 205 1555-1765 17-236 (269)
497 KOG0288|consensus 93.5 2.9 6.4E-05 50.3 17.2 128 1669-1796 1-128 (459)
498 KOG0040|consensus 93.4 48 0.001 46.5 58.3 562 1180-1797 1593-2191(2399)
499 KOG2751|consensus 93.4 2.4 5.2E-05 51.5 16.6 129 1658-1788 141-269 (447)
500 PRK10884 SH3 domain-containing 93.4 1.1 2.4E-05 50.6 13.3 82 1714-1798 91-172 (206)
No 1
>KOG0994|consensus
Probab=100.00 E-value=0 Score=3257.68 Aligned_cols=1745 Identities=47% Similarity=0.951 Sum_probs=1670.1
Q ss_pred chHHHHHHHHHHHHHhhhhcccCCCCC-CCCCCccccCCccccccCCCCceeecccCCCCCCccceeecccCCCcccccc
Q psy2547 6 VPLWLCVVGLLVIFQVTYVTCQLPQPI-SSCERKSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLEDKKKCFTC 84 (1807)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~c~~~~c~p~~~~~~~~~~~~~~a~~tcg~~~~~~~c~~~~~~~~~~c~~c 84 (1807)
.++|.+.++||.+.++. +..+.|..+ .+|++++|||++||||+||..+|+|+||||+++||+||++||+++.++||+|
T Consensus 2 ~l~~~~~l~lL~~~~~~-~~~q~p~q~~~~c~~~sCyP~tGnLliGR~~~L~AsSTCGl~~pe~yCi~Shlqdq~KCf~C 80 (1758)
T KOG0994|consen 2 RLPSCLRLLLLSLCLVA-VAGQSPAQQVSGCSRGSCYPATGNLLIGRARKLTASSTCGLNKPERYCIVSHLQDQKKCFKC 80 (1758)
T ss_pred CchHHHHHHHHHHHHHh-hhccCCcccCCccccCCcCCCccceeecchhheeecccccCCCCcceEEeeccccccccccc
Confidence 34555544444333332 234444433 3799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCccccccCCCCcceeEEEeccceeEEEEEEEEEcCCCCCcEEEEEecCCCCC
Q psy2547 85 NSSPRFDNNPAFSHKIHNIVYATVPRTKTISWWQSENGVENVTIQLDMEAEFHFTHLIIYFKTFRPAAMLIERSHDFGKT 164 (1807)
Q Consensus 85 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~wwqs~~~~~~v~i~l~l~~~f~~~~~~~~f~s~rP~~~~iers~d~g~~ 164 (1807)
|++.|+...++.+|.|+|||++|.|+ .+.|||||+|++++|||+|||+++||||||||+|+||||++|+||||.|||+|
T Consensus 81 dsr~p~~~~~~pshrienVvss~~p~-r~~~WWQSengv~~vtIQLDLEAEFhFTHLImtFktfRPAAMliERS~DFGkT 159 (1758)
T KOG0994|consen 81 DSRYPHKAHLNPSHRIENVVSSFAPP-RNITWWQSENGVENVTIQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGKT 159 (1758)
T ss_pred cCCCccccCCChhhhhhhhhhccCCC-cccchhhcccCCCcceEEeehhhheeeeeeeEeeccCCcceeeeeeccccccc
Confidence 99999944444499999999999986 66799999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhhhhhhCCCCCCCCCCCCCcccccccCCCCCCCCCCEEEEEeCCCCCCCCCCCCCcHhhhcceeeeeeeeee
Q psy2547 165 WQVYRYFAADCAKSFPGIPRDGLRKLTDVYCESRYSSNNPSSGGEVILRVLPPSLHHSNIDPYSSDVQNLIKMTNLRINF 244 (1807)
Q Consensus 165 w~~~qy~a~~C~~~f~~~~~~~~~~~~~~~c~~~~s~~~p~~~g~v~~~~~~~~~~~~~~~~~s~~l~~~~~~t~~ri~~ 244 (1807)
|.||+|||+||..+||++|.+++++++||||||+||++.|+++|||||++|+|+++++ ||||++||+.++||||||+|
T Consensus 160 W~vYrYFAyDC~asFPGv~~~~~kk~~DviCtSrYS~~~PstgGEVifrvl~P~~~ie--dPYs~~IQ~~LKITNLRvn~ 237 (1758)
T KOG0994|consen 160 WHVYRYFAYDCSATFPGVPTGPPKKWDDVICTSRYSDPEPSTGGEVIFRVLDPAIDIE--DPYSAKIQELLKITNLRVNF 237 (1758)
T ss_pred ceeeeeeecccccCCCCCCCCCcccccceeeecccCCCCCCCCCeEEEEecCCCCCCC--CchhHHHHHHhhhhheeeee
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cccccCCCccccccccccceeeEEeeceeeeeccccccCccccccCCCCCC-----CCCCccccccCCCCCCCCCCcccc
Q psy2547 245 TKLHTLGDDLLDTRRQIQEKYYYAITQMIVRGSCSCYGHASRCLPISEADT-----KPDMVHGRCECTHNTQGLNCEKCI 319 (1807)
Q Consensus 245 ~~~~t~~~~~~~~~~~~~~~~~yai~~~~v~g~C~C~gha~~C~~~~~~~~-----~~~~~~~~C~C~hnt~G~~Ce~C~ 319 (1807)
+|+||+|++++|.|.++.++||||||||+|+|+|+|||||++|.|.++... +..||||+|+|+|||+|+|||+|.
T Consensus 238 tklhtlgdnllD~r~E~~ekyyYAiy~~vVrGsCfCyGHAs~C~P~~g~~s~~~~~ta~mVHG~C~C~HNT~G~nCE~C~ 317 (1758)
T KOG0994|consen 238 TKLHTLGDNLLDSREEIREKYYYAIYDLVVRGSCFCYGHASQCAPVDGARSAKAPGTAHMVHGRCMCKHNTAGLNCEHCA 317 (1758)
T ss_pred EeeccccccccccccccccchhheeeeeeeecceeecCchhhcccCCCCCcccCCCccceecceeEeccCCCCCChHHhh
Confidence 999999999999999999999999999999999999999999999998762 335999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCcCCCCCCCCCCcccchhhhccCCCccccccCCCCCCCCCCCccccccCCcCCCCCCCCCCC
Q psy2547 320 DFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPE 399 (1807)
Q Consensus 320 ~~~~~~p~~~~~~~~~~~C~~C~Cn~ha~~C~~d~~~~~~~g~~~gg~C~~C~~nt~G~~C~~C~~g~~~~~~~~~~~~~ 399 (1807)
|||||+||+||.|.++|+|++|+||+||.+||||++||.++|+++||||++|+|||+|.|||+|+|+|||+|.+++++|+
T Consensus 318 ~fYnDlPWrpAeG~~~neCrkC~CNgHa~sCHFD~aV~~ASG~vSGGVCDdCqHNT~G~~CE~CkP~fYRdprr~i~~p~ 397 (1758)
T KOG0994|consen 318 PFYNDLPWRPAEGKTSNECRKCECNGHADTCHFDMAVYEASGNVSGGVCDDCQHNTEGQNCERCKPFFYRDPRRDISDPD 397 (1758)
T ss_pred HhhcCCCCCccCCCCcccccccCCCCCcccccccHHHHhhcCCcccccCccccccccccchhhcCcccccCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCCCCccCCCCCCC--cCCcccccCCCCCCCCCCcCCCCcccCCCCCCCCcccCCCCCCCCcCCCCCCC
Q psy2547 400 VCLRCDCDPGGSLDDGICDPYTDDV--LVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNK 477 (1807)
Q Consensus 400 ~C~~C~C~~~gs~~~~~C~~~~~~~--~~~G~C~Ck~~~~G~~Cd~C~~g~~~~~~~~~~gC~~C~C~~~Gs~~~~~Cd~ 477 (1807)
+|+||+|||.||.+.|.||.+.|++ .+.|+|.||++|.|+|||+|++|||||+..||.||.+|.||+.||+++++||+
T Consensus 398 vC~pC~CdP~GS~~~g~cds~~Dp~~GlvaGqC~CK~~V~G~RCd~Ck~Gywgl~~~dp~GC~~C~CN~lGT~~~s~CD~ 477 (1758)
T KOG0994|consen 398 VCKPCECDPAGSQDGGICDSFCDPSTGLVAGQCRCKEHVAGRRCDRCKDGYWGLTSADPYGCRPCDCNPLGTRNGSGCDP 477 (1758)
T ss_pred ccccccCCCCcCcCCCccccccCccccccccccccccCcCccccchhccCcccCccCCCCCccccccccccccCCCCCCC
Confidence 9999999999999999999999988 68899999999999999999999999999999999999999999999888999
Q ss_pred CCCCcccCCCcCCCCcCcccCCccccCCcCCCCcccCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCccccCCCC
Q psy2547 478 DTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYD 557 (1807)
Q Consensus 478 ~~G~C~Ck~~v~G~~Cd~C~~G~~~l~~~~~~GC~~C~C~~~g~~~~~C~~~tGqC~Cr~~~~G~~C~~~~~g~~~~~~~ 557 (1807)
.||.|.||+.|+|+.||+|.|+||+|+++. .||.||+||.|||+++.|+.++|||.||+++.||+|.++.+|||.+.|+
T Consensus 478 ~TG~C~ckrlvTg~~cdqclPeh~gLs~~~-~gc~~cdcd~GGs~d~sc~~~sGqC~CRe~~~GR~c~~~~~~yy~~~l~ 556 (1758)
T KOG0994|consen 478 ETGDCYCKRLVTGIDCDQCLPEHWGLSNDL-EGCRPCDCDQGGSYDNSCDLHSGQCECREHMLGRRCEQVCPGYYSPVLD 556 (1758)
T ss_pred CCCceEeeccccCCCccccCccccccCCCC-CCCcccccCCCCCCCcccccccCccccccccccccccccCCcccccccc
Confidence 999999999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCcccCCceEEEeccCCCCCCCCcccCCccccccCCCeeEEEeccCCCCCcceEEEEeccCCCCccceeeEEE
Q psy2547 558 NFLYEAENANCKTDKCVVEIRQPLGGGNENTWTGPGFMKGFENTGLVFEIDNIPTPMDYDIVVRYEPVTNTDWENVDVIV 637 (1807)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1807)
|++||||+... .....++.|..+......+|+|.||+++++|+.+.|++..||.+|.|+|+|||+|..|..|+.+.|+|
T Consensus 557 h~i~eAe~~~~-~~~~~v~~r~~~~~~~~~sftG~gf~r~~e~~~l~f~~~~ip~sm~Ydv~ir~~~~~~~~wen~~itv 635 (1758)
T KOG0994|consen 557 HYIYEAEDAGT-GVEVNVKERKVLKSTKLPSFTGKGFVRVPEGTTLEFTVPIIPPSMEYDVLIRYDPRTPKLWENAKITV 635 (1758)
T ss_pred hhhhhhhhccc-cceeeeeeeeecccCCCccccccceeecCCCceeeeecCCCCcccccchheeccCCCcchhhhheEEe
Confidence 99999999865 45556666766455577899999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcceEEecCCCcceeecCCcccCCCceEEEEEEeecCCCCCCCCCcceeEeeeEeccCccc
Q psy2547 638 EREGNVDINGPCGNAVPQDDIKRTRLPVGSRAVKVYPPACLEPGKKYKVHLIFHQDNNGTTGPSASILIDSIALLPNIQS 717 (1807)
Q Consensus 638 ~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 717 (1807)
.+|+. ++.+.|+..+|.++.+.++|++++||++++++|||+.|+.|+++|.|.+.+....+|.+ ||||++|+|++.+
T Consensus 636 qrp~~-p~~g~c~~~~~~dd~~~~sl~p~sRyvv~~~~vClE~G~~Yklri~~~~~~~~~esp~a--LiDSl~L~P~~~~ 712 (1758)
T KOG0994|consen 636 QRPGQ-PSLGRCGMAIPKDDRIPFSLPPGSRYVVAPNPVCLEAGKVYKLRIYFERKSHDVESPYA--LIDSLVLIPRIDV 712 (1758)
T ss_pred ecCCC-CcccccccccccccccccccCCCceeeecCCchhhccCcceEEEEEeccccCCcccchh--hhhhhhhcccccc
Confidence 99998 78899999999999999999999999999999999999999999999985544444444 9999999999999
Q ss_pred cccccCCchhhhhhccccccccCcccccccCCCCchhhhcccccCCccccCCCccCCCCCCCCCCCcccCCCCcccCCCC
Q psy2547 718 IPFFQGPENFERAREFDHYRCGDSYITVYRGVPIPEACKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPN 797 (1807)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~s~~~~~~~g~~~c~C~~~gs~~~~c~~~~g~C~C~~~ 797 (1807)
+++|+|+. ...+.+|++|+| +++.++++. ++.+.|.++.+++++++|+++.+|+|||+||+|.+|++.+|||.|+||
T Consensus 713 l~iFqg~~-~a~~~~yerYqC-~~sl~~~k~-~~~e~C~~l~~~lsa~l~n~a~~CnCnptGSlS~vCn~~GGqCqCkPn 789 (1758)
T KOG0994|consen 713 LPIFQGSV-LADKKTYERYQC-ESSLSDMKT-KSDEVCQNLDNSLSALLHNGASMCNCNPTGSLSSVCNPNGGQCQCKPN 789 (1758)
T ss_pred ccccccch-hhhhHHHHHhhh-hhccccccc-CcchhhhhhhhhHHHHHhcCccccccCCCccccccccCCCceecccCc
Confidence 99999985 334999999999 555566666 789999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCcccCCCCcccCCCCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCC
Q psy2547 798 VVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCD 877 (1807)
Q Consensus 798 ~~G~~C~~C~~g~~~~~~~~C~~C~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~~~~~C~~C~C~~~~~~Cd 877 (1807)
++|++||+|+||+|||+|.||++|+|+..||++..||.+||||.|++|++|+.|++|+|||||||.|+||+||||+++||
T Consensus 790 VVGR~CdqCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~C~~g~ygrqCnqCqpG~WgFPeCr~CqCNgHA~~Cd 869 (1758)
T KOG0994|consen 790 VVGRRCDQCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITGQCQCRPGTYGRQCNQCQPGYWGFPECRPCQCNGHADTCD 869 (1758)
T ss_pred cccccccccCCcccCcCCccCccccccccccccccccccccceeeccccchhhccccCCCccCCCcCccccccCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCccCCCCCcCCCCcccCCCCCCCCCCcCCCCCCCCCCCCccCCccccCCCCCceeeecCCCCcCCCCCC
Q psy2547 878 SKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDG 957 (1807)
Q Consensus 878 ~~tg~C~~C~~~~~G~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~~~~C~C~~g~~G~~Ce~ 957 (1807)
+.||.|+.|++.|+|.+|++|.+||||+|..|+++.|+|||||.++.||.+|+.+|++++++.+.+|+|.+||+|.+|+.
T Consensus 870 ~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~ 949 (1758)
T KOG0994|consen 870 PITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEI 949 (1758)
T ss_pred ccccccccccccccccchhhhhccccCCcccCCCCCCCCCCCCCCCccchhccccccccccccceeeecccCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCCCcccCCCCCCcCCCCCCCC
Q psy2547 958 CLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDH 1037 (1807)
Q Consensus 958 C~~g~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~~~~C~~C~C~~~g~~~ 1037 (1807)
|++||||+|.. ||+|++|+|+||||+.+++.||..||.||+|++.|+|.||+.|.+||||++..++|+.|.|+..||++
T Consensus 950 CA~~~fGnP~~-GGtCq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~GdA~~q~CqrC~Cn~LGTn~ 1028 (1758)
T KOG0994|consen 950 CADNHFGNPSE-GGTCQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDHCEHCKDGFYGDALRQNCQRCVCNFLGTNS 1028 (1758)
T ss_pred hcccccCCccc-CCccccccccCCcCccCCCccchhhchhhhhhhcccccchhhccccchhHHHHhhhhhheccccccCC
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcCCCCccccCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCCccccCCCcccCCCCcCCCCc
Q psy2547 1038 SKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNF 1117 (1807)
Q Consensus 1038 ~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~~~C~~c~C~~~gs~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~ 1117 (1807)
. +.||++||||+|+||+.|.+||+|+++||+++||.||++|.|++.| ++ +||.+||||+|+|||+|+.|++|.+-|
T Consensus 1029 ~-~~CDr~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~--~p-qCN~ftGQCqCkpGfGGR~C~qCqel~ 1104 (1758)
T KOG0994|consen 1029 T-CHCDRFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPIG--GP-QCNEFTGQCQCKPGFGGRTCSQCQELY 1104 (1758)
T ss_pred c-cccccccCcCCCCcccccccccccccchhccccCCCCCccCCCccC--Cc-cccccccceeccCCCCCcchhHHHHhh
Confidence 8 9999999999999999999999999999999999999999999965 67 999999999999999999999999999
Q ss_pred cCCCCCCCccCCCCCCCCCCCccccCCceEeccCCccccCCCcCCCCCccCCCCCCCCCCcccchhhhhHhHHHhHHHHH
Q psy2547 1118 WGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDSILRGLADQTTKVI 1197 (1807)
Q Consensus 1118 ~g~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~C~~C~~c~~~~~~~~~~~~~~~~~l~ 1197 (1807)
||+|..+|++|+|++.|+.+++||+.||+|.|+||++|.+||+|++||.|.+|.|.||++||+.||.++.+|.+++.+|+
T Consensus 1105 WGdP~~~C~aCdCd~rG~~tpQCdr~tG~C~C~~Gv~G~rCdqCaRgy~G~fP~C~PCh~CF~~WD~il~~L~~rt~rl~ 1184 (1758)
T KOG0994|consen 1105 WGDPNEKCRACDCDPRGIETPQCDRATGRCVCRPGVGGPRCDQCARGYSGQFPVCVPCHECFQTWDAILQELALRTHRLI 1184 (1758)
T ss_pred cCCCCCCceecCCCCCCCCCCCccccCCceeecCCCCCcchhhhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCcchhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhh-hccCCchhhhhhhhhhHHHHHH
Q psy2547 1198 TDASNIKQTGASGAYTKEFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQI-MNNEDPNGVGKTLGNTTQRINL 1276 (1807)
Q Consensus 1198 ~~~~~~~~~~~~~~~~~~~~~le~~l~~lq~lL~~~~~~~~~~~~l~~~l~~l~~~l-~~~~~l~~~e~~l~~~~~~~~~ 1276 (1807)
.+++.|+.+|+.++|..+|.+++++|++|+.+|+..+.+...+++|.+.++.|+++| ...+.|.+++..|.++.+.+..
T Consensus 1185 ~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~ 1264 (1758)
T KOG0994|consen 1185 NRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPL 1264 (1758)
T ss_pred HHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccch
Confidence 999999999999999999999999999999999999999999999999999999999 8889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1277 ARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTF 1356 (1807)
Q Consensus 1277 ~~~~le~L~~el~~l~~~~~~l~~~~~~l~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~~i~~a~~~~~~a~~ll~~~~ 1356 (1807)
+.++|+.|+++...++..+.+|+++++++++.++.+|+++++.+++++.+++++++++...+....++. +++.+|++.+
T Consensus 1265 a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~~s-R~e~l~~k~k 1343 (1758)
T KOG0994|consen 1265 AGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQSAEAERRVDASSRELASLVDQS-RVEELLVKQK 1343 (1758)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhh-HHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998877776666655 8899999999
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHhhhcccchhHHHhhccCCCCCCCCCCCCCCC---CCCCcccCCchhHHHHHHHHHHHH
Q psy2547 1357 PQFTQGQEENEKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLCGGAGCG---KCGGMWCSNGTLSESNSAKDYAET 1433 (1807)
Q Consensus 1357 ~~~~~~~~e~~~~L~~L~~kL~~l~~~L~~l~~~icg~~~~~C~~~Cgg~~C~---~Cgg~~C~~~a~~~a~~A~~~a~~ 1433 (1807)
.+|+. +.+++.+|.+|+.+|..|. |+++++++||++++||+++|||+||+ .|||++| .||++.|++|+.+|.+
T Consensus 1344 ~~f~~-~~~n~~~L~el~~~l~sL~--L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC-~Ga~t~A~~A~~~A~~ 1419 (1758)
T KOG0994|consen 1344 GDFGG-LAENSRLLVELRAELSSLP--LTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSC-RGAVTRAGGALLMAGD 1419 (1758)
T ss_pred hcccc-cccccHHHHHHHHHhcCCC--CchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccc-cchhcccchHHHHhhh
Confidence 99988 7888999999999999998 99999999999999999999999986 8899999 5999999999999999
Q ss_pred hhHhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1434 SKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNK 1513 (1807)
Q Consensus 1434 l~~~i~e~~~~~eeL~~~~~~~~~~~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~ 1513 (1807)
+...|..+.++++++++.+.+++.++.+|+++|++++++++..+++
T Consensus 1420 ----------------------------------~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q 1465 (1758)
T KOG0994|consen 1420 ----------------------------------ADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQ 1465 (1758)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6666777778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy2547 1514 TAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKAN 1593 (1807)
Q Consensus 1514 ~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~ 1593 (1807)
+++...++++|+++|++||....++|+.|+++++.||+++||+++++|+.|..+|.+.+++|.+++.||.+++.++++|+
T Consensus 1466 ~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~ 1545 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAE 1545 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1594 DLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQ 1673 (1807)
Q Consensus 1594 ~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~ 1673 (1807)
.|+.+|++++++|+.++..++.|.++|++|+.++.+++++|+++...|+.+++.|.++++++..+|..+..+.++|.+|+
T Consensus 1546 ~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1546 NLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELE 1625 (1758)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1674 ERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNT 1753 (1807)
Q Consensus 1674 ~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~ 1753 (1807)
.++++|+.++.++...++.|++.+..++.+|.++++.++.|.+.++.+++.++.+.+....++.|+++|+++|++|..++
T Consensus 1626 ~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a 1705 (1758)
T KOG0994|consen 1626 TRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQA 1705 (1758)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q psy2547 1754 TAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSNNYKNCV 1806 (1807)
Q Consensus 1754 ~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~~Y~tc~ 1806 (1807)
.+++++|++|+..+..++++|+.++++|..|+++|+++++.|.+++.+|+||.
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv~~y~tC~ 1758 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINERVLYYATCK 1758 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999995
No 2
>KOG1836|consensus
Probab=100.00 E-value=6.8e-146 Score=1461.02 Aligned_cols=987 Identities=32% Similarity=0.725 Sum_probs=809.3
Q ss_pred ccccCCccccccCCCCceeecccCCCCCCccceeecccCCC--ccccccCCCCCCCCCCCCCCCccccccccCCCCCCcc
Q psy2547 38 KSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLEDK--KKCFTCNSSPRFDNNPAFSHKIHNIVYATVPRTKTIS 115 (1807)
Q Consensus 38 ~~c~p~~~~~~~~~~~~~~a~~tcg~~~~~~~c~~~~~~~~--~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 115 (1807)
.+|+|.|.|+++.. .++++.|||+.++ .||++...... ..|.+|++. ++...||+++|||.. ..+|
T Consensus 40 q~~~pe~~~aa~~~--~~~~~~~cg~~~~-~~c~~~~~~g~~~~~C~~C~~a-----g~~~~h~~~~~id~~----~~~t 107 (1705)
T KOG1836|consen 40 QASCPEFANAAGNL--LATETNTCGLKGG-GYCVPCNCNGHSNGYCVICNAA-----GEHCEHPASNLIDGA----VGET 107 (1705)
T ss_pred cccccccccccCCc--ceeEeccccCCCC-CcCcccCCcCCCCCcceeCCCC-----CcccccCHhhhccCC----cCCc
Confidence 58999999999876 7899999999887 99996544332 369999986 688999999999953 2579
Q ss_pred ccccCCCC-----cceeEEEeccceeEEEEE-EEEEcCCCCCcEEEEEecCCCCCccchhhhHhhhhhhCCCCCCC----
Q psy2547 116 WWQSENGV-----ENVTIQLDMEAEFHFTHL-IIYFKTFRPAAMLIERSHDFGKTWQVYRYFAADCAKSFPGIPRD---- 185 (1807)
Q Consensus 116 wwqs~~~~-----~~v~i~l~l~~~f~~~~~-~~~f~s~rP~~~~iers~d~g~~w~~~qy~a~~C~~~f~~~~~~---- 185 (1807)
||||++.. ..||++++|.+.|++.++ +++|.||||++|+||||+|++.+|.||||||.+|...+. .++.
T Consensus 108 wwQS~~l~~g~q~~~~~~~~~~~g~~~~i~~~~~~~~sprp~s~~l~k~~~~~g~~~p~q~~s~s~~~~~~-~~~~~~l~ 186 (1705)
T KOG1836|consen 108 WWQSPPLPEGHQYNFVTNLTDLLGKFRIITVVRKKANSPRPESFGLYKSTDEDGPWCPWQFCSGSCRDCLS-RPDRQALR 186 (1705)
T ss_pred cccCCCCCcccccchhhhhhhcCCeEEEEEeeeeccCCCCCccceeecccccCCCcCCceeecccCccccc-cCCccccc
Confidence 99999754 379999999998888655 555689999999999999999999999999998876662 3332
Q ss_pred CCCCCCcccccccCCCCCCCCCCEEEEEeCCCCCCCCCCCCCcHhhhcceeeeeeeeeecccccCCCccccc----cccc
Q psy2547 186 GLRKLTDVYCESRYSSNNPSSGGEVILRVLPPSLHHSNIDPYSSDVQNLIKMTNLRINFTKLHTLGDDLLDT----RRQI 261 (1807)
Q Consensus 186 ~~~~~~~~~c~~~~s~~~p~~~g~v~~~~~~~~~~~~~~~~~s~~l~~~~~~t~~ri~~~~~~t~~~~~~~~----~~~~ 261 (1807)
+..+++.++||+.||+|.|+++|+|+|++|.+++... +..+||+||+|++||+|||+|++++|++.++|+. ++.+
T Consensus 187 ~~~~d~~~~Ct~e~S~i~PL~ng~i~~s~l~grpsa~-~f~~S~~L~ef~tat~ir~~l~r~~T~~~~l~~~~~~~dp~v 265 (1705)
T KOG1836|consen 187 GGENDDAAICTTEFSDISPLENGEIAFSTLEGRPSAY-NFETSPELQEFTTATNIRIRLQRLNTFGLHLMSDEIFKDPKV 265 (1705)
T ss_pred CCCCCccceeccccccCcccccchhhhhhhcCCCccc-ccCCCHHHHhhhccchhhhhhhhhcccchhhcchhhhcCCce
Confidence 2337789999999999999999999999996544332 1237999999999999999999999999665543 6889
Q ss_pred cceeeEEeeceeeeeccccccCccccccCCCCCCCCCCccccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcCC
Q psy2547 262 QEKYYYAITQMIVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQC 341 (1807)
Q Consensus 262 ~~~~~yai~~~~v~g~C~C~gha~~C~~~~~~~~~~~~~~~~C~C~hnt~G~~Ce~C~~~~~~~p~~~~~~~~~~~C~~C 341 (1807)
+++|||||+||+|+|||+|||||++|...... ...+|+|+|||.|..||+|.|||+++||++++...+++|+.|
T Consensus 266 ~~~yyyaisdi~vggrc~cnGha~~c~~~~~~------~~lvc~c~hNT~g~~ce~c~p~fn~rpw~~~ts~~~~Ec~~c 339 (1705)
T KOG1836|consen 266 TRSYYYAISDISVGGRCKCNGHASECDESEPQ------NLLVCRCQHNTCGLDCERCLPFFNDRPWARATSQTANECEAC 339 (1705)
T ss_pred eeeeeeeHhhccccceEEEccchhhcCcccCC------ccceeecccccccccccccccchhcchhhhhhhcccCceeec
Confidence 99999999999999999999999999876542 124899999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccchhhhccCCCccccccCCCCCCCCCCCccccccCCcCCCCCCCCCCCCcccccCCCCCCCCCCccCCCC
Q psy2547 342 NCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYT 421 (1807)
Q Consensus 342 ~Cn~ha~~C~~d~~~~~~~g~~~gg~C~~C~~nt~G~~C~~C~~g~~~~~~~~~~~~~~C~~C~C~~~gs~~~~~C~~~~ 421 (1807)
+|||||..|.||+.+++.++ +||+|.+|++||+|.|||+|..+|||.+.++ .+++|++|.|++.|+++. .|+.
T Consensus 340 nc~g~S~ec~~d~~l~r~~~--~gg~c~~c~entag~~CerC~~~f~R~~~~~--~~~~c~~C~c~~~gsl~~-~~~~-- 412 (1705)
T KOG1836|consen 340 NCNGRSEECYFDRELDRRTG--GGGHCLDCRENTAGVHCERCLLGFYRSRQVT--EPNPCRPCICNSAGSLSA-QCDD-- 412 (1705)
T ss_pred cCCCchHhhhhcHHHHHhhc--CCccccCccccccCcchhhccccccccCCCC--CCCcCcccCCCCccchhh-hhcc--
Confidence 99999999999999998887 5999999999999999999999999988776 689999999999999864 6776
Q ss_pred CCCcCCcccccCCCCCCCCCCcCCCCcccCCCCCCCCccc----CCCCCCCCcCCCCCCCCCCCcccCCCcCCCCcCccc
Q psy2547 422 DDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEP----CTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCL 497 (1807)
Q Consensus 422 ~~~~~~G~C~Ck~~~~G~~Cd~C~~g~~~~~~~~~~gC~~----C~C~~~Gs~~~~~Cd~~~G~C~Ck~~v~G~~Cd~C~ 497 (1807)
.|.|.|||+|+|.+||+|++|||+++ ..+|+. |.|++.|++.+ |+ +|+|.||+||+|.+|++|+
T Consensus 413 -----~g~c~c~P~v~g~~cD~ca~g~~~~~---~~~~~~~~~~~~~~~~g~~~~--c~--~g~c~cK~nveg~~ce~ck 480 (1705)
T KOG1836|consen 413 -----TGRCQCKPGVTGQKCDRCAPGFYGLP---ACGCQLNQVSCQCLPAGSLDN--CD--SGRCLCKENVEGTRCERCK 480 (1705)
T ss_pred -----CCcceecccccccccCccCcccccCc---cccccccccccccccccCccc--cC--CceeeeccCccceeccccC
Confidence 49999999999999999999999987 467876 89999999864 77 8999999999999999999
Q ss_pred CCccccCCcCCCCcccCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCccccCCCCCcccccccCcccCCceEEEe
Q psy2547 498 PHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYDNFLYEAENANCKTDKCVVEI 577 (1807)
Q Consensus 498 ~G~~~l~~~~~~GC~~C~C~~~g~~~~~C~~~tGqC~Cr~~~~G~~C~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1807)
||||+|+..|+.||++|+|+.+++.-..+++.||+|.+.+++.+..++++..+++.+..+ ..|....... .+..
T Consensus 481 pgyfnl~~~n~~gc~~C~c~g~s~~c~~~~~~t~~~~~~s~f~~~s~~~~a~~~~~~~~~-~~~~~~~~~~-~~~~---- 554 (1705)
T KOG1836|consen 481 PGYFNLEAENPLGCTPCFCSGHSSECDSADGYTGVCVILSNFHQDSCGWVAVQRFGSEDD-QQWSENPSGA-APSA---- 554 (1705)
T ss_pred CcccccCcCCCCCCccceeeccccccccccCcceeEEEecccccccccceeecccCCccc-cccccccccc-cccc----
Confidence 999999999999999999999999999999999999999999999999999888764322 1111000000 0000
Q ss_pred ccCCCCCCCCcccCCc-c---ccccCCCeeEEEeccCCCCCcceEEEEeccCCCCccceeeEEEecCCcccCCCCCCCCC
Q psy2547 578 RQPLGGGNENTWTGPG-F---MKGFENTGLVFEIDNIPTPMDYDIVVRYEPVTNTDWENVDVIVEREGNVDINGPCGNAV 653 (1807)
Q Consensus 578 ~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 653 (1807)
..-....|..+. | .++.+++.+.|+ ++|.....
T Consensus 555 ----~~~~~v~~~a~a~flG~q~~sy~~~l~~~-------------~~~~~~~~-------------------------- 591 (1705)
T KOG1836|consen 555 ----QDNEPVYFQAPAKFLGDQRVSYGSELNFT-------------LRVDACDT-------------------------- 591 (1705)
T ss_pred ----ccccceeEecchhhhcchhhcccccceeE-------------EEEecccC--------------------------
Confidence 000001111110 0 001111111111 11100000
Q ss_pred CCCCcceEEecCCCcceeecCCcccCCCceEEEEEEeecCCCCCCCCCcceeEeeeEeccCccccccccCCchhhhhhcc
Q psy2547 654 PQDDIKRTRLPVGSRAVKVYPPACLEPGKKYKVHLIFHQDNNGTTGPSASILIDSIALLPNIQSIPFFQGPENFERAREF 733 (1807)
Q Consensus 654 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 733 (1807)
.+...++.|+.+....+. ..+ ...+.
T Consensus 592 ----------------~~~~~~~~l~ga~~~~~s---------------------~~~--------~~~g~--------- 617 (1705)
T KOG1836|consen 592 ----------------DPSGADVILEGAGKLNCS---------------------TPL--------QAKGN--------- 617 (1705)
T ss_pred ----------------CCcccceEEecCCccccc---------------------ccc--------ccccC---------
Confidence 000000001100000000 000 00000
Q ss_pred ccccccCcccccccCCCCchhhhcccccCCccccCCCccCCCCCCCCCCCcccCCCCcccCCCCcccCCCCCCCCCCcCC
Q psy2547 734 DHYRCGDSYITVYRGVPIPEACKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGF 813 (1807)
Q Consensus 734 ~~~~c~~~~~~~~~~~~~~~~c~~~~~s~~~~~~~g~~~c~C~~~gs~~~~c~~~~g~C~C~~~~~G~~C~~C~~g~~~~ 813 (1807)
.|.+ .+++.+.+.-...+.+...+++...+..-..++.|+....|..|+.+.+..+.+
T Consensus 618 ---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~i~~~~~~~~~~~~~~v 675 (1705)
T KOG1836|consen 618 ---QCSE-------------------EAVGFYLFRLHEVTIYKWAPSLRLFDFRRLLQNLTRGRIRGTYSDACLGYLDNV 675 (1705)
T ss_pred ---CCcc-------------------cccccceeccccccccccccccChhhHhhhhccccccceEEEEccccccccccc
Confidence 0000 011111111222333444455566677777899999999999999999966665
Q ss_pred CCCCCcCCC-CCCCCCCCCcccCCCCcccCCCCccCCCCCCCCCCCCCCC-------CCccCCCCCCCCCCCCCCCCccC
Q psy2547 814 GPEGCKACD-CNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYP-------TCQRCICNGHADLCDSKTGTCIS 885 (1807)
Q Consensus 814 ~~~~C~~C~-C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~~~~-------~C~~C~C~~~~~~Cd~~tg~C~~ 885 (1807)
. .+.... +++.| ..+.+..+|.|++||+|+.|+.|.+|||... .|.+|+||||+.+||+.||+|.
T Consensus 676 ~--le~a~~~~~~~~----~~~~wve~c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~- 748 (1705)
T KOG1836|consen 676 T--LESARPLGDGAG----ATDTWVEQCTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCK- 748 (1705)
T ss_pred c--hhcccccCCCCC----CccchhhhccCCCCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCcee-
Confidence 3 345555 55544 5667888999999999999999999999743 4899999999999999999998
Q ss_pred CCCCccCCCCCcCCCCcccCCCCCCCCCCcCCCCCCCCCCCCccCCccccCCCCCceee-ecCCCCcCCCCCCCCCCCCC
Q psy2547 886 CRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVIC-ECKEGYRGTRCDGCLDNYFG 964 (1807)
Q Consensus 886 C~~~~~G~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~~~~C-~C~~g~~G~~Ce~C~~g~~g 964 (1807)
|++++.|.+|++|.+||||++..++..+|++|+||++ +.|...+....++| .||+||+|.+|+.|+.||||
T Consensus 749 C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~--------~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~dgyfg 820 (1705)
T KOG1836|consen 749 CKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNG--------GACGQTPEILEVVCKNCPPGYTGLRCEECADGYFG 820 (1705)
T ss_pred cccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCC--------hhhcCcCcccceecCCCCCCCcccccccCCCcccc
Confidence 9999999999999999999999998888999999987 34544444567899 59999999999999999999
Q ss_pred CCCCCC---CCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCCCccc----CCCCCCcCCCCCCCC
Q psy2547 965 NPQERG---GSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALE----QNCTECTCNILGIDH 1037 (1807)
Q Consensus 965 ~p~~~~---~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~~----~~C~~C~C~~~g~~~ 1037 (1807)
+|...+ ..|++|+|++|+|++..+.|+..+|.|+.|.++|+|.+|+.|.+||||++.. +.|..|.|++.|+..
T Consensus 821 ~p~~~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~gs~~ 900 (1705)
T KOG1836|consen 821 NPLGHDGDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPAGSEL 900 (1705)
T ss_pred CCCCCCCCcccCccceeccccCccccccccccccceeeccCCcccccccccccCccccccCCCcCCccccccCccCCccc
Confidence 999877 7999999999999999999999999999999999999999999999999876 779999999999875
Q ss_pred CCCCCcCCCCccccCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCCccccCCCcccCCCCcCCCCc
Q psy2547 1038 SKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNF 1117 (1807)
Q Consensus 1038 ~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~~~C~~c~C~~~gs~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~ 1117 (1807)
..-.|++.||||.|+|++.|..|..|.+||||+.++.+|.+|+|++.||.+. .|+..||||.|+||++|.+|++|..+|
T Consensus 901 ~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s~~gC~~c~c~~~gs~~~-~c~~~tGqc~c~~gVtgqrc~qc~~~~ 979 (1705)
T KOG1836|consen 901 PSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLNSGVGCEPCNCDPTGSESS-DCDVGTGQCYCRPGVTGQRCDQCETYH 979 (1705)
T ss_pred ccccCCCcccceeccCCCCccccccccccccccCCCCCcccccccccccccc-cccccCCceeeecCccccccCccccCc
Confidence 5567999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cCCCCCCCccCCCCCCCCCCCccccCCceEeccCCccccCCCcCCCCCccCCCCCCCCCCcccchhhhhHhHHHhHHHHH
Q psy2547 1118 WGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDSILRGLADQTTKVI 1197 (1807)
Q Consensus 1118 ~g~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~C~~C~~c~~~~~~~~~~~~~~~~~l~ 1197 (1807)
||+...+|.+|.|++.||.+.+||+.+|+|.|++|+.|.+|++|.+++|+...+|.+|+.|+......+..+..++..+.
T Consensus 980 ~~~~~~gc~~c~c~~~Gs~~~qc~~~~G~c~c~~~~~g~~c~~c~~~~~~~~~~~~~~~~c~~~i~~~~~~l~~~~~~~~ 1059 (1705)
T KOG1836|consen 980 FGFQTEGCGLCECDPLGSRGFQCDPEDGQCPCRPGFEGRRCDQCEEGFFGNAQGCSPCPGCYALIQITVGQLKKRLPELD 1059 (1705)
T ss_pred ccccccCCcceecccCCcccceecccCCeeeecCCCCCcccccccCCccccccCCCCCcceeeccchHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999988899999999999899999998888777
Q ss_pred hhhhccc
Q psy2547 1198 TDASNIK 1204 (1807)
Q Consensus 1198 ~~~~~~~ 1204 (1807)
..+..+.
T Consensus 1060 ~~~~~~~ 1066 (1705)
T KOG1836|consen 1060 GYLVKII 1066 (1705)
T ss_pred ceeEeec
Confidence 6665554
No 3
>KOG0994|consensus
Probab=100.00 E-value=6.3e-134 Score=1216.36 Aligned_cols=1338 Identities=23% Similarity=0.474 Sum_probs=883.4
Q ss_pred cCCCCCCCCCCcccchhhh--ccCC--CccccccCCCCCCCCCCCccccccCCcCCCCCCC--CCCCCcccccCCCCCCC
Q psy2547 339 KQCNCNNHSTKCHFDEAVY--NSTG--RISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEF--SDPEVCLRCDCDPGGSL 412 (1807)
Q Consensus 339 ~~C~Cn~ha~~C~~d~~~~--~~~g--~~~gg~C~~C~~nt~G~~C~~C~~g~~~~~~~~~--~~~~~C~~C~C~~~gs~ 412 (1807)
..|.|+|||+.|..-+... ...| .+..|+| .|+|||.|.|||+|+++|...||+|. ..++.|+.|+||.+.
T Consensus 269 GsCfCyGHAs~C~P~~g~~s~~~~~ta~mVHG~C-~C~HNT~G~nCE~C~~fYnDlPWrpAeG~~~neCrkC~CNgHa-- 345 (1758)
T KOG0994|consen 269 GSCFCYGHASQCAPVDGARSAKAPGTAHMVHGRC-MCKHNTAGLNCEHCAPFYNDLPWRPAEGKTSNECRKCECNGHA-- 345 (1758)
T ss_pred cceeecCchhhcccCCCCCcccCCCccceeccee-EeccCCCCCChHHhhHhhcCCCCCccCCCCcccccccCCCCCc--
Confidence 4699999999996433322 1223 3457999 59999999999999999999999985 568999999999652
Q ss_pred CCCccCCCCC-----CCcCCccc-ccCCCCCCCCCCcCCCCcccC---CCCCCCCcccCCCCCCCCcCCCC----CCCCC
Q psy2547 413 DDGICDPYTD-----DVLVSGKC-HCKPNVGGRRCDMCKDGFWNF---NETNPNGCEPCTCNIQGTINSQG----CNKDT 479 (1807)
Q Consensus 413 ~~~~C~~~~~-----~~~~~G~C-~Ck~~~~G~~Cd~C~~g~~~~---~~~~~~gC~~C~C~~~Gs~~~~~----Cd~~~ 479 (1807)
.+|..... .....|.| .|.+|++|++|++|+|+||.. +.++|..|.||.|||.||.+... ||+.+
T Consensus 346 --~sCHFD~aV~~ASG~vSGGVCDdCqHNT~G~~CE~CkP~fYRdprr~i~~p~vC~pC~CdP~GS~~~g~cds~~Dp~~ 423 (1758)
T KOG0994|consen 346 --DTCHFDMAVYEASGNVSGGVCDDCQHNTEGQNCERCKPFFYRDPRRDISDPDVCKPCECDPAGSQDGGICDSFCDPST 423 (1758)
T ss_pred --ccccccHHHHhhcCCcccccCccccccccccchhhcCcccccCCCCCCCCccccccccCCCCcCcCCCccccccCccc
Confidence 12321100 00123445 499999999999999999974 46679999999999999998633 68888
Q ss_pred ----CCcccCCCcCCCCcCcccCCccccCCcCCCCcccCCCCCCCCCCCC-CcccCCcccccCCCCCCCCCCCCCccccC
Q psy2547 480 ----GDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNN-CDVISGQCKCKPHASGRTCSTPEQSYYSP 554 (1807)
Q Consensus 480 ----G~C~Ck~~v~G~~Cd~C~~G~~~l~~~~~~GC~~C~C~~~g~~~~~-C~~~tGqC~Cr~~~~G~~C~~~~~g~~~~ 554 (1807)
|+|.||+||.|++||+|++|||+|+.++|+||.||+|++.|++.+. ||+.||.|.|++.|+|+.|+++.|+||..
T Consensus 424 GlvaGqC~CK~~V~G~RCd~Ck~Gywgl~~~dp~GC~~C~CN~lGT~~~s~CD~~TG~C~ckrlvTg~~cdqclPeh~gL 503 (1758)
T KOG0994|consen 424 GLVAGQCRCKEHVAGRRCDRCKDGYWGLTSADPYGCRPCDCNPLGTRNGSGCDPETGDCYCKRLVTGIDCDQCLPEHWGL 503 (1758)
T ss_pred cccccccccccCcCccccchhccCcccCccCCCCCccccccccccccCCCCCCCCCCceEeeccccCCCccccCcccccc
Confidence 9999999999999999999999999999999999999999999887 99999999999999999999999999986
Q ss_pred CCCCc--------ccccccCcccCCceEEEeccCCCCCCCCcccCCccccccCCCeeEEEeccCCCCCcceEEEEeccCC
Q psy2547 555 PYDNF--------LYEAENANCKTDKCVVEIRQPLGGGNENTWTGPGFMKGFENTGLVFEIDNIPTPMDYDIVVRYEPVT 626 (1807)
Q Consensus 555 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1807)
.-+.. ...+.+..+.....+...|+.+...+.....+..|..+.+. ..|...+......++|++|-.+..
T Consensus 504 s~~~~gc~~cdcd~GGs~d~sc~~~sGqC~CRe~~~GR~c~~~~~~yy~~~l~h--~i~eAe~~~~~~~~~v~~r~~~~~ 581 (1758)
T KOG0994|consen 504 SNDLEGCRPCDCDQGGSYDNSCDLHSGQCECREHMLGRRCEQVCPGYYSPVLDH--YIYEAEDAGTGVEVNVKERKVLKS 581 (1758)
T ss_pred CCCCCCCcccccCCCCCCCcccccccCccccccccccccccccCCcccccccch--hhhhhhhccccceeeeeeeeeccc
Confidence 54321 11111111111112333444433323332322222111110 011111111223344544433222
Q ss_pred --CCccceeeEEEecCCcccCCCCCCCCCCCCCcceEEe---cCCCcceeecC--CcccCCCceEEEEEEeecCCCCCCC
Q psy2547 627 --NTDWENVDVIVEREGNVDINGPCGNAVPQDDIKRTRL---PVGSRAVKVYP--PACLEPGKKYKVHLIFHQDNNGTTG 699 (1807)
Q Consensus 627 --~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~l---~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~ 699 (1807)
...|++..++....+. .+.+.+ |.+..|.++.+ +..-..+....|.|.-+...+...-
T Consensus 582 ~~~~sftG~gf~r~~e~~---------------~l~f~~~~ip~sm~Ydv~ir~~~~~~~~wen~~itvqrp~~p~~g~c 646 (1758)
T KOG0994|consen 582 TKLPSFTGKGFVRVPEGT---------------TLEFTVPIIPPSMEYDVLIRYDPRTPKLWENAKITVQRPGQPSLGRC 646 (1758)
T ss_pred CCCccccccceeecCCCc---------------eeeeecCCCCcccccchheeccCCCcchhhhheEEeecCCCCccccc
Confidence 1245555544332221 111111 11111111111 1001111222222221111000000
Q ss_pred CCcceeEee-eEeccCccccccccCCchhh------hhhcccccccc-Cc-ccccccCCCCchhhhcccccCCcccc-CC
Q psy2547 700 PSASILIDS-IALLPNIQSIPFFQGPENFE------RAREFDHYRCG-DS-YITVYRGVPIPEACKKQHYSIGMYVH-HG 769 (1807)
Q Consensus 700 ~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~------~~~~~~~~~c~-~~-~~~~~~~~~~~~~c~~~~~s~~~~~~-~g 769 (1807)
..+..--|. +..+|.-..+-++......+ .+..|.+.+-. +. +..|+..+.++..-.--+|.-+...+ ..
T Consensus 647 ~~~~~~dd~~~~sl~p~sRyvv~~~~vClE~G~~Yklri~~~~~~~~~esp~aLiDSl~L~P~~~~l~iFqg~~~a~~~~ 726 (1758)
T KOG0994|consen 647 GMAIPKDDRIPFSLPPGSRYVVAPNPVCLEAGKVYKLRIYFERKSHDVESPYALIDSLVLIPRIDVLPIFQGSVLADKKT 726 (1758)
T ss_pred ccccccccccccccCCCceeeecCCchhhccCcceEEEEEeccccCCcccchhhhhhhhhccccccccccccchhhhhHH
Confidence 000000000 01111111111111110000 01111110000 00 00011110000000011222222111 11
Q ss_pred CccCCCCCCCCCCCcccCCCCcccCCCCcccCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCcccCCCCcccCCCCccCC
Q psy2547 770 ANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGR 849 (1807)
Q Consensus 770 ~~~c~C~~~gs~~~~c~~~~g~C~C~~~~~G~~C~~C~~g~~~~~~~~C~~C~C~~~g~~~~~C~~~~g~C~C~~g~~G~ 849 (1807)
....+|. -|++..=++....|.=--+.. --+-.+|-.+|+|++.||++.+|++..|||.|+||+.|+
T Consensus 727 yerYqC~--~sl~~~k~~~~e~C~~l~~~l-----------sa~l~n~a~~CnCnptGSlS~vCn~~GGqCqCkPnVVGR 793 (1758)
T KOG0994|consen 727 YERYQCE--SSLSDMKTKSDEVCQNLDNSL-----------SALLHNGASMCNCNPTGSLSSVCNPNGGQCQCKPNVVGR 793 (1758)
T ss_pred HHHhhhh--hcccccccCcchhhhhhhhhH-----------HHHHhcCccccccCCCccccccccCCCceecccCccccc
Confidence 2233341 223322222222221100000 011234668999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC--CCccCCCCCC---CCCCCCCCCCccCCCCCccCCCCCcCCCCcccCCCCCCCCCCcCCCCCCCCC
Q psy2547 850 ECDQCSPGYWNYP--TCQRCICNGH---ADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVE 924 (1807)
Q Consensus 850 ~C~~C~~g~~~~~--~C~~C~C~~~---~~~Cd~~tg~C~~C~~~~~G~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~ 924 (1807)
+|++|+||+|||. +|++|+|+.. ...||..||+|. |+.|+.|..|++|.+||||+| .|+||.|+++
T Consensus 794 ~CdqCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~-C~~g~ygrqCnqCqpG~WgFP------eCr~CqCNgH-- 864 (1758)
T KOG0994|consen 794 RCDQCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITGQCQ-CRPGTYGRQCNQCQPGYWGFP------ECRPCQCNGH-- 864 (1758)
T ss_pred cccccCCcccCcCCccCcccccccccccccccccccccee-eccccchhhccccCCCccCCC------cCccccccCc--
Confidence 9999999999996 5999999964 358999999997 999999999999999999998 5999999974
Q ss_pred CCCccCCccccCCCCCceee-ecCCCCcCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC--CCCCccCCCc----c
Q psy2547 925 SGLSYADTCQLDPRSQDVIC-ECKEGYRGTRCDGCLDNYFGNPQE-RGGSCEPCDCSNNTDLA--LPGNCDTLTG----K 996 (1807)
Q Consensus 925 ~~~~~~~~C~~~~~~~~~~C-~C~~g~~G~~Ce~C~~g~~g~p~~-~~~~C~~C~C~~~~~~~--~~~~C~~~tG----~ 996 (1807)
+.+|+.. ++.| .|+.-++|.+|++|.+||||+|.. .|..|+||+|+++.+.. ...+|...+- .
T Consensus 865 -----A~~Cd~~----tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~iv 935 (1758)
T KOG0994|consen 865 -----ADTCDPI----TGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIV 935 (1758)
T ss_pred -----ccccCcc----ccccccccccccccchhhhhccccCCcccCCCCCCCCCCCCCCCccchhcccccccccccccee
Confidence 6888643 4779 999999999999999999999986 46799999999875322 1346744332 5
Q ss_pred cccCCCCCCCCCCCcccCCCCCCccc-CCCCCCcCCCCCCCCCCCCCcCCCCccc-cCCCcccccccccCCCCcccCCCC
Q psy2547 997 CLQCRYDTEGDHCQVCKAGFFGNALE-QNCTECTCNILGIDHSKGPCDRTTGQCP-CLPNVIGVSCDRCLKNHWKIASGT 1074 (1807)
Q Consensus 997 C~~C~~~~~G~~C~~C~~G~~G~~~~-~~C~~C~C~~~g~~~~~~~C~~~tG~C~-C~~g~~G~~C~~C~~g~~~~~~~~ 1074 (1807)
| +|..||.|.+|+.|++||||++.. ..|++|.|+++-.....+.||..||+|. |+..+.|.+|+.|.+||||.+.-+
T Consensus 936 C-~C~~GY~G~RCe~CA~~~fGnP~~GGtCq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~GdA~~q 1014 (1758)
T KOG0994|consen 936 C-HCQEGYSGSRCEICADNHFGNPSEGGTCQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDHCEHCKDGFYGDALRQ 1014 (1758)
T ss_pred e-ecccCccccchhhhcccccCCcccCCccccccccCCcCccCCCccchhhchhhhhhhcccccchhhccccchhHHHHh
Confidence 8 599999999999999999999886 8899999998765545589999999996 999999999999999999999889
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCccccCCCcccCCCCcCCCCccCCCCC-CCccCCCCCCCCCCCccccCCceEeccCCc
Q psy2547 1075 GCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNV-ECFPCDCDPSGSATSQCHQNNGTCVCHQGI 1153 (1807)
Q Consensus 1075 ~C~~c~C~~~gs~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~~-~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~ 1153 (1807)
.|+.|.|+-.|+.+...||++||||.|.|++.|.+||+|+++||...+. ||.||+|++.| .++|+..||||.|+|||
T Consensus 1015 ~CqrC~Cn~LGTn~~~~CDr~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~--~pqCN~ftGQCqCkpGf 1092 (1758)
T KOG0994|consen 1015 NCQRCVCNFLGTNSTCHCDRFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPIG--GPQCNEFTGQCQCKPGF 1092 (1758)
T ss_pred hhhhheccccccCCccccccccCcCCCCcccccccccccccchhccccCCCCCccCCCccC--CccccccccceeccCCC
Confidence 9999999999988766899999999999999999999999999998876 99999999955 56999999999999999
Q ss_pred cccCCCcCCCCCccCC-CCCCCCCCcccchhhhhHhHHHhHHHHHhhhhcccccCCCcchh------------------H
Q psy2547 1154 GGVRCDTCARGYIGTA-PDCSPCGECFDNWDSILRGLADQTTKVITDASNIKQTGASGAYT------------------K 1214 (1807)
Q Consensus 1154 ~G~~C~~C~~g~~~~~-~~C~~C~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------~ 1214 (1807)
+|++|++|+.-|||++ ..|.+|+.-....+. . +.++ .....+...|+.|+.. .
T Consensus 1093 GGR~C~qCqel~WGdP~~~C~aCdCd~rG~~t----p--QCdr--~tG~C~C~~Gv~G~rCdqCaRgy~G~fP~C~PCh~ 1164 (1758)
T KOG0994|consen 1093 GGRTCSQCQELYWGDPNEKCRACDCDPRGIET----P--QCDR--ATGRCVCRPGVGGPRCDQCARGYSGQFPVCVPCHE 1164 (1758)
T ss_pred CCcchhHHHHhhcCCCCCCceecCCCCCCCCC----C--Cccc--cCCceeecCCCCCcchhhhhhhhcCCCCCCcchHH
Confidence 9999999999999998 589999732211110 0 0110 1233444445544311 2
Q ss_pred HHHHHHHHHHHHH----HHHHhc---------cCCchhHHHHHHHHHHHHHhh-hcc---CCchhhhhhhhhhHHHHHH-
Q psy2547 1215 EFELLEKKIEDVK----ALVENT---------TRSSHDLTVMLTTIDDMKKQI-MNN---EDPNGVGKTLGNTTQRINL- 1276 (1807)
Q Consensus 1215 ~~~~le~~l~~lq----~lL~~~---------~~~~~~~~~l~~~l~~l~~~l-~~~---~~l~~~e~~l~~~~~~~~~- 1276 (1807)
-|..++.-|++|. .++..+ .....++..|+++|..++.-| ... +.++++...+..++.++..
T Consensus 1165 CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~ 1244 (1758)
T KOG0994|consen 1165 CFQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQAL 1244 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3555544443333 222221 223356777778887777776 111 1112222222222222222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1277 ------ARLALNDLTEEIKKLNKTGEMLKENATLLQENN------VEGA-LELTRQAHDTSLKLKEQSTETEKQINDAER 1343 (1807)
Q Consensus 1277 ------~~~~le~L~~el~~l~~~~~~l~~~~~~l~~~~------~~~a-~~~~~~a~~~~~~a~~~~~~~~~~i~~a~~ 1343 (1807)
++..|..+..++....+.++.|.++...+.... ++.+ ...+..|++.+..+-.++.+++..++.+
T Consensus 1245 ~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s-- 1322 (1758)
T KOG0994|consen 1245 TEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQSAEAERRVDAS-- 1322 (1758)
T ss_pred HhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHhhhhh--
Confidence 222222222222222222222222222111100 0000 0012222222222222222222222222
Q ss_pred HHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhh---hcccchhHHHhhccCCCCC-CCCCC--CCCCC-CCCCccc
Q psy2547 1344 QCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSL---EKNLPDLNELICDKRGDPC-DNLCG--GAGCG-KCGGMWC 1416 (1807)
Q Consensus 1344 ~~~~a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~~l---~~~L~~l~~~icg~~~~~C-~~~Cg--g~~C~-~Cgg~~C 1416 (1807)
..++....+. ...+..+.+.+.+..++ +..|.+++.++.+..-.+- +.+|| |+.|+ .|||++|
T Consensus 1323 -----~~~l~s~~~~-----sR~e~l~~k~k~~f~~~~~n~~~L~el~~~l~sL~L~~lne~vCG~p~apC~s~CGG~gC 1392 (1758)
T KOG0994|consen 1323 -----SRELASLVDQ-----SRVEELLVKQKGDFGGLAENSRLLVELRAELSSLPLTPLNEQVCGAPGAPCDSLCGGAGC 1392 (1758)
T ss_pred -----hhcccchhhh-----hHHHHHHHHhhhcccccccccHHHHHHHHHhcCCCCchhhHHhcCCCCCCCCCCCCCCCC
Confidence 2122111111 01112222222222221 1123333333322211111 35566 56698 9999999
Q ss_pred CCch---hHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1417 SNGT---LSESNSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQES 1493 (1807)
Q Consensus 1417 ~~~a---~~~a~~A~~~a~~l~~~i~e~~~~~eeL~~~~~~~~~~~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~~ 1493 (1807)
...- -...++|.. .+..|..++.++..++...++++.++...+
T Consensus 1393 ~~~~~cGg~sC~Ga~t----------------------------------~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v 1438 (1758)
T KOG0994|consen 1393 RQDGTCGGLSCRGAVT----------------------------------RAGGALLMAGDADTQLRSKLAEAEQTLSMV 1438 (1758)
T ss_pred CCCCCccCccccchhc----------------------------------ccchHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6421 122234433 344488889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHH-
Q psy2547 1494 HAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVI- 1572 (1807)
Q Consensus 1494 ~~a~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~- 1572 (1807)
.+|+.+|.+++.+|+.+..++++++.++++-+++++++ |+.+.+++. .-.+++++|+.+++++..+.
T Consensus 1439 ~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~L----------i~~v~~Flt--~~~adp~si~~vA~~vL~l~l 1506 (1758)
T KOG0994|consen 1439 REAKLSASEAQQSAQRALEQANASRSQMEESNRELRNL----------IQQVRDFLT--QPDADPDSIEEVAEEVLALEL 1506 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhc--CCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999988866 445666652 23467899999999866654
Q ss_pred ----HhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1573 ----KSLTDIDTI-------LTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDI 1641 (1807)
Q Consensus 1573 ----~~L~~~~~~-------l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i 1641 (1807)
..|.++... |......+.+.+.-+.+|+.+..+|..+.+.+++++.+.+.+..+++++..++..+++.|
T Consensus 1507 p~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai 1586 (1758)
T KOG0994|consen 1507 PLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAI 1586 (1758)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 223333333334444588888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1642 SAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQET 1721 (1807)
Q Consensus 1642 ~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~ 1721 (1807)
+.+...+..+++.+.+++++...++..+..+.+++.+|+..+++++.++.+...+++.+++.+..++..+..+++.++.+
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~l 1666 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEIL 1666 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1722 DNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1722 ~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
.+.++...+-+++........+++|+.|..++++++.+-++..+.|++++..++..+..|....++|..|..++++-
T Consensus 1667 q~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1667 QKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 88887777777777777788889999999999999999988899999999999999999999999999988887764
No 4
>KOG3512|consensus
Probab=100.00 E-value=1.8e-100 Score=864.97 Aligned_cols=432 Identities=34% Similarity=0.727 Sum_probs=371.2
Q ss_pred CCCCCCC-----ccccCCccccccCCCCceeecccCCCCCCccceeecccCCCcccc-ccCCCCCCCCCCCCCCCccccc
Q psy2547 31 PISSCER-----KSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLEDKKKCF-TCNSSPRFDNNPAFSHKIHNIV 104 (1807)
Q Consensus 31 ~~~~c~~-----~~c~p~~~~~~~~~~~~~~a~~tcg~~~~~~~c~~~~~~~~~~c~-~c~~~~~~~~~~~~~h~~~~~~ 104 (1807)
..++|++ ++|.|.|+|+++|+ +|-|++||| ++||+||.+ .+...|. .|||+ ||.++||++.|+
T Consensus 33 ~~dpc~~e~g~p~~C~P~~vnaa~g~--~V~as~TCG-drPe~~c~~---~~~~~~~~eCdAs-----~p~~AHpPallt 101 (592)
T KOG3512|consen 33 QVDPCEDETGEPRACQPEFVNAAFGK--KVPASSTCG-DRPETFCSV---ENPYLCSNECDAS-----NPDLAHPPALLT 101 (592)
T ss_pred CCCCccCCCCCeeecChhhhhhhhCC--ccCCccccC-CCccceeee---cCCCcccccccCC-----CccccCChHHhc
Confidence 4566765 68999999999998 789999999 789999996 4567786 99999 699999999998
Q ss_pred cccCCCCCCccccccCCCC-----cceeEEEeccceeEEEEEEEEEcCCCCCcEEEEEecCCCCCccchhhhHhhhhhhC
Q psy2547 105 YATVPRTKTISWWQSENGV-----ENVTIQLDMEAEFHFTHLIIYFKTFRPAAMLIERSHDFGKTWQVYRYFAADCAKSF 179 (1807)
Q Consensus 105 ~~~~~~~~~~~wwqs~~~~-----~~v~i~l~l~~~f~~~~~~~~f~s~rP~~~~iers~d~g~~w~~~qy~a~~C~~~f 179 (1807)
|... .++.|+|||++|. .||||||.|++.|++|||+|+|.|+||++|+||||+|||+||+||||||++|++.|
T Consensus 102 D~n~--~~n~TcWqS~tw~~~~~PlnVtlTLSlgKkfELT~Vsl~FcS~rPdsmaL~KS~D~GrTWqPfQFYss~C~~~f 179 (592)
T KOG3512|consen 102 DLNG--PGNATCWQSETWSRYPSPLNVTLTLSLGKKFELTYVSLTFCSGRPDSMALEKSLDYGRTWQPFQFYSSDCRKAF 179 (592)
T ss_pred CCCC--CCCcceeeccccCCCCCCceEEEEEecCcEEEEEEEEEEEecCCCceeeeeeccccCCcccccchhHHHHHHHh
Confidence 8543 4799999999664 49999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC---CCCCCcccccccCCCCCCCCCCEEEEEeCCCCCCCCCCCCCcHhhhcceeeeeeeeeecccccCCCcccc
Q psy2547 180 PGIPRDG---LRKLTDVYCESRYSSNNPSSGGEVILRVLPPSLHHSNIDPYSSDVQNLIKMTNLRINFTKLHTLGDDLLD 256 (1807)
Q Consensus 180 ~~~~~~~---~~~~~~~~c~~~~s~~~p~~~g~v~~~~~~~~~~~~~~~~~s~~l~~~~~~t~~ri~~~~~~t~~~~~~~ 256 (1807)
++.|... -.+.++|+||..|+...|..+|.|+|..|..++.+.+.| .||+||||||||||||+|+|++++|++..+
T Consensus 180 gr~~~~a~isk~n~~Ea~Ct~s~~~~~~~~~~~~af~~l~~Rps~~dld-ss~vLqDwvTaTDiRvvl~Rp~s~G~~~dd 258 (592)
T KOG3512|consen 180 GRSPRRADISKSNEQEALCTESYSDGAGSGGGKIAFFELEDRPSAFDLD-SSPVLQDWVTATDIRVVLLRPASLGEEYDD 258 (592)
T ss_pred CCCCcccccccCCccceeeccccccCCCCCCceEEeeeecCCccccccc-cchhhhhheeeeeeEEEEechhhcCCcchh
Confidence 7755432 356899999999999999999999999997665544212 599999999999999999999999986443
Q ss_pred ccccccceeeEEeeceeeeeccccccCccccccCCCCCCCCCCccccccCCCCCCCCCCcccccccCCCCCCCCCCCCCC
Q psy2547 257 TRRQIQEKYYYAITQMIVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTN 336 (1807)
Q Consensus 257 ~~~~~~~~~~yai~~~~v~g~C~C~gha~~C~~~~~~~~~~~~~~~~C~C~hnt~G~~Ce~C~~~~~~~p~~~~~~~~~~ 336 (1807)
. ..+.+|||||+||.|+|||+|||||++|+.+.. .|.+|+|+|||+|+.|++|+|||+++||++|+...+|
T Consensus 259 e--~~l~rYfYAisdl~VgGRCKCNgHAs~Cv~d~~-------~~ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~ 329 (592)
T KOG3512|consen 259 E--ANLARYFYAISDLAVGGRCKCNGHASRCVMDES-------SHLTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPAN 329 (592)
T ss_pred h--hhhhhhheecccceeeeeeeecCccceeeeccC-------CceEEecccCCCCCCcccccccccCCCccccccCCCc
Confidence 3 355679999999999999999999999997643 3679999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCCCcccchhhhccCCCccccccCCCCCCCCCCCccccccCCcCCCCCCCCCCCCcccccCCCCCCCCCCc
Q psy2547 337 ACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGI 416 (1807)
Q Consensus 337 ~C~~C~Cn~ha~~C~~d~~~~~~~g~~~gg~C~~C~~nt~G~~C~~C~~g~~~~~~~~~~~~~~C~~C~C~~~gs~~~~~ 416 (1807)
+|.+|+||+|+.+|+|+.++|..+|+.+||||.+|+|||+|+||+.|++||||++.+++++.++|+.|+|||+||+.. .
T Consensus 330 ~c~ac~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gk-t 408 (592)
T KOG3512|consen 330 ECVACNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGK-T 408 (592)
T ss_pred cccccccchhhhhcccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCcccccccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999865 8
Q ss_pred cCCCCCCCcCCcccccCCCCCCCCCCcCCCCcccCCCCCCCCcccCCCCCCC-CcCCCCCCCCCCCcccCCCcCCCCcCc
Q psy2547 417 CDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQG-TINSQGCNKDTGDCTCKRNVEGRDCNQ 495 (1807)
Q Consensus 417 C~~~~~~~~~~G~C~Ck~~~~G~~Cd~C~~g~~~~~~~~~~gC~~C~C~~~G-s~~~~~Cd~~~G~C~Ck~~v~G~~Cd~ 495 (1807)
|+.. +|+|.||+||+|..|++|+|||+.... ...-|.. ++..+ +...+.=.+..-.|.||+..+|.+|++
T Consensus 409 CNq~------tGqCpCkeGvtG~tCnrCa~gyqqsrs-~vapcik--~p~~~~~~~~s~ve~qd~~s~Ck~~~~~~r~n~ 479 (592)
T KOG3512|consen 409 CNQT------TGQCPCKEGVTGLTCNRCAPGYQQSRS-PVAPCIK--IPTDAPTLGSSGVEPQDQCSKCKASPGGKRLNQ 479 (592)
T ss_pred cccc------CCcccCCCCCcccccccccchhhcccC-CCcCcee--cCCCCccccCCCCcchhccccCCCCCcceeccc
Confidence 9976 699999999999999999999987421 1112332 22222 111111123344567888888877754
No 5
>KOG1836|consensus
Probab=100.00 E-value=4.9e-67 Score=702.56 Aligned_cols=850 Identities=27% Similarity=0.547 Sum_probs=578.9
Q ss_pred ceeEEEeccceeEEEEEEEEEc--CCCCCcEEEEEecCCCCCccchhhhHhhhh--hhCCCCC-CCCCCCCCcccccccC
Q psy2547 125 NVTIQLDMEAEFHFTHLIIYFK--TFRPAAMLIERSHDFGKTWQVYRYFAADCA--KSFPGIP-RDGLRKLTDVYCESRY 199 (1807)
Q Consensus 125 ~v~i~l~l~~~f~~~~~~~~f~--s~rP~~~~iers~d~g~~w~~~qy~a~~C~--~~f~~~~-~~~~~~~~~~~c~~~~ 199 (1807)
.+..|=+.....=++..-|.|. --||.++--+.|-- =..|.--.|.-..+. .+|..-- ...+..+..|+=...|
T Consensus 193 ~~~Ct~e~S~i~PL~ng~i~~s~l~grpsa~~f~~S~~-L~ef~tat~ir~~l~r~~T~~~~l~~~~~~~dp~v~~~yyy 271 (1705)
T KOG1836|consen 193 AAICTTEFSDISPLENGEIAFSTLEGRPSAYNFETSPE-LQEFTTATNIRIRLQRLNTFGLHLMSDEIFKDPKVTRSYYY 271 (1705)
T ss_pred cceeccccccCcccccchhhhhhhcCCCcccccCCCHH-HHhhhccchhhhhhhhhcccchhhcchhhhcCCceeeeeee
Confidence 4556666666666666666663 56888887665543 223443333332222 2332100 1112222233322233
Q ss_pred CCCCCCCCCEEEEEeCCCCCCCCCCCCCcHhhhcceeeee-eeeeecccccCCCccccccccccceee-EEeecee-eee
Q psy2547 200 SSNNPSSGGEVILRVLPPSLHHSNIDPYSSDVQNLIKMTN-LRINFTKLHTLGDDLLDTRRQIQEKYY-YAITQMI-VRG 276 (1807)
Q Consensus 200 s~~~p~~~g~v~~~~~~~~~~~~~~~~~s~~l~~~~~~t~-~ri~~~~~~t~~~~~~~~~~~~~~~~~-yai~~~~-v~g 276 (1807)
+-..-..+|+............. ..++ |+++- +++|.|.+.-..-|-...+.| -++++.. -.-
T Consensus 272 aisdi~vggrc~cnGha~~c~~~-------------~~~~~lvc~c-~hNT~g~~ce~c~p~fn~rpw~~~ts~~~~Ec~ 337 (1705)
T KOG1836|consen 272 AISDISVGGRCKCNGHASECDES-------------EPQNLLVCRC-QHNTCGLDCERCLPFFNDRPWARATSQTANECE 337 (1705)
T ss_pred eHhhccccceEEEccchhhcCcc-------------cCCccceeec-ccccccccccccccchhcchhhhhhhcccCcee
Confidence 32223336777665543322211 2222 34444 688998765332221111222 1233332 344
Q ss_pred ccccccCccccccCCCCCCCCCCccccc-cCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcCCCCCCCCCCcccchh
Q psy2547 277 SCSCYGHASRCLPISEADTKPDMVHGRC-ECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEA 355 (1807)
Q Consensus 277 ~C~C~gha~~C~~~~~~~~~~~~~~~~C-~C~hnt~G~~Ce~C~~~~~~~p~~~~~~~~~~~C~~C~Cn~ha~~C~~d~~ 355 (1807)
.|.|||||.+|.++..+..... ..|+| .|++||+|.+||+|..+|++. |.+ ..++.|.+|+||.-.+. .
T Consensus 338 ~cnc~g~S~ec~~d~~l~r~~~-~gg~c~~c~entag~~CerC~~~f~R~-~~~---~~~~~c~~C~c~~~gsl----~- 407 (1705)
T KOG1836|consen 338 ACNCNGRSEECYFDRELDRRTG-GGGHCLDCRENTAGVHCERCLLGFYRS-RQV---TEPNPCRPCICNSAGSL----S- 407 (1705)
T ss_pred eccCCCchHhhhhcHHHHHhhc-CCccccCccccccCcchhhcccccccc-CCC---CCCCcCcccCCCCccch----h-
Confidence 8999999999998876543211 34789 699999999999999999643 222 16789999999864331 0
Q ss_pred hhccCCCccccccCCCCCCCCCCCccccccCCcCCCCCCCCCCCCccc----ccCCCCCCCCCCccCCCCCCCcCCcccc
Q psy2547 356 VYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLR----CDCDPGGSLDDGICDPYTDDVLVSGKCH 431 (1807)
Q Consensus 356 ~~~~~g~~~gg~C~~C~~nt~G~~C~~C~~g~~~~~~~~~~~~~~C~~----C~C~~~gs~~~~~C~~~~~~~~~~G~C~ 431 (1807)
.--...|.| .|+++.+|..|++|.+|||..+. ..|++ |.|++.|+.. .|+ .|.|.
T Consensus 408 ----~~~~~~g~c-~c~P~v~g~~cD~ca~g~~~~~~------~~~~~~~~~~~~~~~g~~~--~c~--------~g~c~ 466 (1705)
T KOG1836|consen 408 ----AQCDDTGRC-QCKPGVTGQKCDRCAPGFYGLPA------CGCQLNQVSCQCLPAGSLD--NCD--------SGRCL 466 (1705)
T ss_pred ----hhhccCCcc-eecccccccccCccCcccccCcc------ccccccccccccccccCcc--ccC--------Cceee
Confidence 001135889 69999999999999999999774 34565 8999999874 577 49999
Q ss_pred cCCCCCCCCCCcCCCCcccCCCCCCCCcccCCCCCCCCcCCCCCCCCCCCcccCCCcCCCCcCcccCCccccCCcCCCCc
Q psy2547 432 CKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGC 511 (1807)
Q Consensus 432 Ck~~~~G~~Cd~C~~g~~~~~~~~~~gC~~C~C~~~Gs~~~~~Cd~~~G~C~Ck~~v~G~~Cd~C~~G~~~l~~~~~~GC 511 (1807)
||+||+|.+|++|+||||++.+.++.||.+|.|+..++.-.. ++..+|+|.+..++.+..++.+..++++.. -+
T Consensus 467 cK~nveg~~ce~ckpgyfnl~~~n~~gc~~C~c~g~s~~c~~-~~~~t~~~~~~s~f~~~s~~~~a~~~~~~~-----~~ 540 (1705)
T KOG1836|consen 467 CKENVEGTRCERCKPGYFNLEAENPLGCTPCFCSGHSSECDS-ADGYTGVCVILSNFHQDSCGWVAVQRFGSE-----DD 540 (1705)
T ss_pred eccCccceeccccCCcccccCcCCCCCCccceeecccccccc-ccCcceeEEEecccccccccceeecccCCc-----cc
Confidence 999999999999999999999999999999999998887654 899999999999999999999999999854 35
Q ss_pred ccCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCccccCCCCCcccccccCcccCCceEEEeccCCCCCCCCcccC
Q psy2547 512 KPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYDNFLYEAENANCKTDKCVVEIRQPLGGGNENTWTG 591 (1807)
Q Consensus 512 ~~C~C~~~g~~~~~C~~~tGqC~Cr~~~~G~~C~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1807)
..+.+++.+.....++...+++.++..+.|.++......+.+.. .|.+.+...
T Consensus 541 ~~~~~~~~~~~~~~~~~~~v~~~a~a~flG~q~~sy~~~l~~~~----~~~~~~~~~----------------------- 593 (1705)
T KOG1836|consen 541 QQWSENPSGAAPSAQDNEPVYFQAPAKFLGDQRVSYGSELNFTL----RVDACDTDP----------------------- 593 (1705)
T ss_pred ccccccccccccccccccceeEecchhhhcchhhcccccceeEE----EEecccCCC-----------------------
Confidence 67788888888888888888999999988877766554443211 000000000
Q ss_pred CccccccCCCeeEEEeccCCCCCcceEEEEeccCCCCccceeeEEEecCCcccCCCCCCCCCCCCCcceEEecCCCccee
Q psy2547 592 PGFMKGFENTGLVFEIDNIPTPMDYDIVVRYEPVTNTDWENVDVIVEREGNVDINGPCGNAVPQDDIKRTRLPVGSRAVK 671 (1807)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~ 671 (1807)
...++++.+.... . ...+.. .. +...+.
T Consensus 594 ----------------------~~~~~~l~ga~~~-------~--~s~~~~--~~---g~~~~~---------------- 621 (1705)
T KOG1836|consen 594 ----------------------SGADVILEGAGKL-------N--CSTPLQ--AK---GNQCSE---------------- 621 (1705)
T ss_pred ----------------------cccceEEecCCcc-------c--cccccc--cc---cCCCcc----------------
Confidence 0001111111000 0 000000 00 000000
Q ss_pred ecCCcccCCCceEEEEEEeecCCCCCCCCCcceeEeeeEeccCcccccc---ccCCchhhhhhccccccccCcccccccC
Q psy2547 672 VYPPACLEPGKKYKVHLIFHQDNNGTTGPSASILIDSIALLPNIQSIPF---FQGPENFERAREFDHYRCGDSYITVYRG 748 (1807)
Q Consensus 672 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 748 (1807)
+.-..|.+++...... .+.|......+ .+.......+.
T Consensus 622 -------~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~r~~i~~----------------- 662 (1705)
T KOG1836|consen 622 -------EAVGFYLFRLHEVTIY---------------KWAPSLRLFDFRRLLQNLTRGRIRG----------------- 662 (1705)
T ss_pred -------cccccceecccccccc---------------ccccccChhhHhhhhccccccceEE-----------------
Confidence 0001122222111100 00011000000 00000000001
Q ss_pred CCCchhhhcccccCCccccCCCccCCCCCCCCCCCcccCCCCcccCCCCcccCCCCCCCCCCcCCCC---CC--CcCCCC
Q psy2547 749 VPIPEACKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGP---EG--CKACDC 823 (1807)
Q Consensus 749 ~~~~~~c~~~~~s~~~~~~~g~~~c~C~~~gs~~~~c~~~~g~C~C~~~~~G~~C~~C~~g~~~~~~---~~--C~~C~C 823 (1807)
..++.+...+..+.. ..+.+= ++ .....+.++++|.|++||+|++|+.|+|||++..+ .. |-+|+|
T Consensus 663 -~~~~~~~~~~~~v~l---e~a~~~-~~----~~~~~~~wve~c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~c 733 (1705)
T KOG1836|consen 663 -TYSDACLGYLDNVTL---ESARPL-GD----GAGATDTWVEQCTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDC 733 (1705)
T ss_pred -EEcccccccccccch---hccccc-CC----CCCCccchhhhccCCCCcccchhhhcchhhhcccccCCCCCccccccc
Confidence 111111111111111 111110 22 23456779999999999999999999999997643 33 455566
Q ss_pred CCCCCCCCcccCCCCcccCCCCccCCCCCCCCCCCCCCC------CCccCCCCCCC---CCCCCCCCCccCCCCCccCCC
Q psy2547 824 NHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYP------TCQRCICNGHA---DLCDSKTGTCISCRNSTDGEN 894 (1807)
Q Consensus 824 ~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~~~~------~C~~C~C~~~~---~~Cd~~tg~C~~C~~~~~G~~ 894 (1807)
+++ ++.||+.||+|.|++++.|++|++|++||||.+ .|++|+|++.+ .+++..++.|.+|+.+|+|.+
T Consensus 734 ngh---~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~r 810 (1705)
T KOG1836|consen 734 NGH---SNICDPRTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLR 810 (1705)
T ss_pred CCc---cccccCCCCceecccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccc
Confidence 555 679999999999999999999999999999975 29999999863 467778899988999999999
Q ss_pred CCcCCCCcccCCCCC--CCCCCcCCCCCCCCCCCCccCCccccCCCCCceee-ecCCCCcCCCCCCCCCCCCCCCCC--C
Q psy2547 895 CERCINGYYGDPRLG--IDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVIC-ECKEGYRGTRCDGCLDNYFGNPQE--R 969 (1807)
Q Consensus 895 Ce~C~~G~~G~~~~~--~~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~~~~C-~C~~g~~G~~Ce~C~~g~~g~p~~--~ 969 (1807)
|+.|..||||+|... ....|++|+|.++.+.+ -.+.|+.. .+.| .|..+.+|.+|+.|.+||||+|.. +
T Consensus 811 Ce~c~dgyfg~p~~~~~~~~~c~~c~c~~n~dp~--~~g~c~~~----tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p 884 (1705)
T KOG1836|consen 811 CEECADGYFGNPLGHDGDVRPCQSCQCNFNVDPN--AFGNCNRL----TGECLKCIHNTAGEYCDLCKEGYFGDPLAPNP 884 (1705)
T ss_pred cccCCCccccCCCCCCCCcccCccceeccccCcc--cccccccc----ccceeeccCCcccccccccccCccccccCCCc
Confidence 999999999999743 23589999999876543 12566543 4789 999999999999999999999986 4
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCCCcccCCCCCCcCCCCCCCCCCCCCcCCCCcc
Q psy2547 970 GGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQC 1049 (1807)
Q Consensus 970 ~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C 1049 (1807)
-+.|.+|.|+.-+.....-+|++.||+| .|.+++.|..|..|.+||||......|.+|.|+..|+.+ ..|+..||||
T Consensus 885 ~~~c~~c~c~p~gs~~~~~~c~~~tGQc-ec~~~v~g~~c~~c~~g~fnl~s~~gC~~c~c~~~gs~~--~~c~~~tGqc 961 (1705)
T KOG1836|consen 885 EDKCFACGCVPAGSELPSLTCNPVTGQC-ECKPNVEGRDCLYCFKGFFNLNSGVGCEPCNCDPTGSES--SDCDVGTGQC 961 (1705)
T ss_pred CCccccccCccCCcccccccCCCcccce-eccCCCCccccccccccccccCCCCCccccccccccccc--ccccccCCce
Confidence 5789999998765443356799999999 599999999999999999999988999999999999866 3999999999
Q ss_pred ccCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCCccccCCCcccCCCCcCCCCccCCCCC-----C
Q psy2547 1050 PCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNV-----E 1124 (1807)
Q Consensus 1050 ~C~~g~~G~~C~~C~~g~~~~~~~~~C~~c~C~~~gs~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~~-----~ 1124 (1807)
.|.|||+|.+|++|..+||++.. .+|.+|.|++.||.+. +|++.+|+|.|++|+.|.+|++|.+|+|+.+.. +
T Consensus 962 ~c~~gVtgqrc~qc~~~~~~~~~-~gc~~c~c~~~Gs~~~-qc~~~~G~c~c~~~~~g~~c~~c~~~~~~~~~~~~~~~~ 1039 (1705)
T KOG1836|consen 962 YCRPGVTGQRCDQCETYHFGFQT-EGCGLCECDPLGSRGF-QCDPEDGQCPCRPGFEGRRCDQCEEGFFGNAQGCSPCPG 1039 (1705)
T ss_pred eeecCccccccCccccCcccccc-cCCcceecccCCcccc-eecccCCeeeecCCCCCcccccccCCccccccCCCCCcc
Confidence 99999999999999999999976 8999999999999988 999999999999999999999999999998753 3
Q ss_pred CccCCCCCCCCCCCccccCCceEeccCCcccc-CCCcCCCCCcc
Q psy2547 1125 CFPCDCDPSGSATSQCHQNNGTCVCHQGIGGV-RCDTCARGYIG 1167 (1807)
Q Consensus 1125 C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~-~C~~C~~g~~~ 1167 (1807)
|.++.++..+.....+...++++.+.....+. .++++..++.+
T Consensus 1040 c~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1083 (1705)
T KOG1836|consen 1040 CYALIQITVGQLKKRLPELDGYLVKIIDGSAEDPDTEFEGGLKE 1083 (1705)
T ss_pred eeeccchHHHHHhhhhhcccceeEeecccCCCCCCchhhcccCC
Confidence 44444444455555666678888887766644 44445444443
No 6
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=100.00 E-value=7.5e-66 Score=577.53 Aligned_cols=230 Identities=40% Similarity=0.760 Sum_probs=213.2
Q ss_pred CCCccccCCccccccCCCCceeecccCCCCCCccceee-cccCCCccccccCCCCCCCCCCCCCCCccccccccCCCCCC
Q psy2547 35 CERKSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIV-SFLEDKKKCFTCNSSPRFDNNPAFSHKIHNIVYATVPRTKT 113 (1807)
Q Consensus 35 c~~~~c~p~~~~~~~~~~~~~~a~~tcg~~~~~~~c~~-~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 113 (1807)
|..++|+|+|+|||+|| +|.||||||.++||+||++ ++....++|++||++ +|.++|||++|+|.+.+ ++
T Consensus 2 ~~~~~C~P~~~nla~g~--~v~assTCG~~~pe~yC~~~~~~~~~~~C~~CDa~-----~p~~~Hp~~~l~D~~~~--~~ 72 (238)
T smart00136 2 GRPRSCYPPFVNLAFGR--EVTATSTCGEPGPERYCKLVGHTEQGKKCDYCDAR-----NPRRSHPAENLTDGNNP--NN 72 (238)
T ss_pred CCCccccCchhhhhcCC--eeeEecCCCCCCCcceeEeccccCcCCcCCCCCCC-----CccccCCHHHhhccCCC--CC
Confidence 56789999999999998 8999999999999999998 455668999999999 58899999999998755 57
Q ss_pred ccccccCCC---CcceeEEEeccceeEEEEEEEEEcCCCCCcEEEEEecCCCCCccchhhhHhhhhhhCCCCCCCCCCC-
Q psy2547 114 ISWWQSENG---VENVTIQLDMEAEFHFTHLIIYFKTFRPAAMLIERSHDFGKTWQVYRYFAADCAKSFPGIPRDGLRK- 189 (1807)
Q Consensus 114 ~~wwqs~~~---~~~v~i~l~l~~~f~~~~~~~~f~s~rP~~~~iers~d~g~~w~~~qy~a~~C~~~f~~~~~~~~~~- 189 (1807)
.|||||+++ .++|||||||+++|||+||+|+|+||||++|||||| |||+||+||||||.||.++|++.+.+.+.+
T Consensus 73 ~TwWQS~~~~~~~~~VtitLdL~k~fevtyi~l~F~s~RPa~~i~erS-d~G~tW~p~qyfa~dC~~~f~~~~~~~~~~~ 151 (238)
T smart00136 73 PTWWQSEPLSNGPQNVNLTLDLGKEFHVTYVILKFCSPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPPRGPITKG 151 (238)
T ss_pred CceecCCCcCCCCccEEEEEecCCEEEEEEEEEEecCCCCceEEEeec-CCCCCCcEeeeeecchhhhcCCCCCCCCCCC
Confidence 899999984 568999999999999999999999999999999999 999999999999999999999888877665
Q ss_pred -CCcccccccCCCCCCCCCCEEEEEeCCCCCCCCCCC-CCcHhhhcceeeeeeeeeecccccCCCccccccccccceeeE
Q psy2547 190 -LTDVYCESRYSSNNPSSGGEVILRVLPPSLHHSNID-PYSSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQIQEKYYY 267 (1807)
Q Consensus 190 -~~~~~c~~~~s~~~p~~~g~v~~~~~~~~~~~~~~~-~~s~~l~~~~~~t~~ri~~~~~~t~~~~~~~~~~~~~~~~~y 267 (1807)
+++|+||+.||++.|+++|+|+|++|++++... | +||++||||++||||||+|+|++|+|+++++.++.++++|||
T Consensus 152 n~~~v~Ct~~ys~~~P~~~g~V~fs~l~~rps~~--~~~~S~~LQd~vtaTdiRi~l~rl~t~g~~~~~~~~~~~~~yyY 229 (238)
T smart00136 152 NEDEVICTSEYSDIVPLEGGEIAFSLLEGRPSAT--DFDNSPVLQEWVTATNIRVRLTRLRTLGDELMDDRPEVTRRYYY 229 (238)
T ss_pred CCCccEECCCCCCCcCCCCCEEEEEecCCCCCCc--CCCCCHHHHhheeeeEEEEEEEccCcCCccccccccccccceeE
Confidence 999999999999999999999999999877665 5 589999999999999999999999999999887889999999
Q ss_pred Eeeceeeee
Q psy2547 268 AITQMIVRG 276 (1807)
Q Consensus 268 ai~~~~v~g 276 (1807)
||+||+|||
T Consensus 230 AIsdi~VgG 238 (238)
T smart00136 230 AISDIAVGG 238 (238)
T ss_pred EEEeeEecC
Confidence 999999998
No 7
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=100.00 E-value=1.5e-63 Score=561.54 Aligned_cols=228 Identities=46% Similarity=0.820 Sum_probs=168.9
Q ss_pred ccCCccccccCCCCceeecccCCCCCCccceeecccCC-CccccccCCCCCCCCCCCCCCCccccccccCCCCCCccccc
Q psy2547 40 CYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLED-KKKCFTCNSSPRFDNNPAFSHKIHNIVYATVPRTKTISWWQ 118 (1807)
Q Consensus 40 c~p~~~~~~~~~~~~~~a~~tcg~~~~~~~c~~~~~~~-~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~wwq 118 (1807)
|+|+|+|||+|| .|.||||||+++||+||++.+..+ ..+|++||++.|. |.++||++||+|...+ ++.||||
T Consensus 1 C~P~~~nla~gr--~v~assTCG~~~pe~yC~~~~~~~~~~~C~~Cda~~~~---~~~~Hp~~~~~D~~~~--~~~TwWQ 73 (237)
T PF00055_consen 1 CYPPFGNLAFGR--EVTASSTCGEPGPERYCRLSGSQGRQRQCFICDASDPD---PRRSHPPSYLTDSHNP--NNSTWWQ 73 (237)
T ss_dssp -----EETTTT---EEECCCBS-SS--EEE--SSSTTT---E-EEE-TTSTS---TTT---GGGGCSSSCT--TB---EE
T ss_pred CCCCcchhhcCC--EeEEEcCCCCCCCccceeccCccccCcccccCCCcccc---cccccChhhccccccc--ccCceec
Confidence 899999999999 699999999999999999877654 6889999999533 4589999999997644 5689999
Q ss_pred cC---CCC--cceeEEEeccceeEEEEEEEEEcCCCCCcEEEEEecCCCCCccchhhhHhhhhhhCCCCCCCCCC---CC
Q psy2547 119 SE---NGV--ENVTIQLDMEAEFHFTHLIIYFKTFRPAAMLIERSHDFGKTWQVYRYFAADCAKSFPGIPRDGLR---KL 190 (1807)
Q Consensus 119 s~---~~~--~~v~i~l~l~~~f~~~~~~~~f~s~rP~~~~iers~d~g~~w~~~qy~a~~C~~~f~~~~~~~~~---~~ 190 (1807)
|+ +|. ++|||||||+++|||+||+|+|+||||++||||||+|+| ||+||||||.||.+.|++.+.+.+. ++
T Consensus 74 S~~~~~g~~~~~VtitLdL~~~f~v~~v~l~F~spRP~~miierS~D~g-tW~p~qYfA~~C~~~f~~~~~~~~~~~~~~ 152 (237)
T PF00055_consen 74 SETLQNGVQYENVTITLDLGKEFEVTYVILQFCSPRPAAMIIERSSDFG-TWQPWQYFASDCSRTFGMPPNGPPPKFANP 152 (237)
T ss_dssp B--STTTTSTT-EEEEEEEEEEEEEEEEEEEESS---SEEEEEEESSTT-SEEEEEEEESSHHHHCS--BTTGGG-STST
T ss_pred CCccCCCCcCcceEEEEcccceEEEEEEEEEEcCCCCCeEEEEEccCCC-ceeEeHHhhcCChhhcCCcccccccccCCC
Confidence 99 676 699999999999999999999999999999999999999 9999999999999999888877654 49
Q ss_pred CcccccccCCCCCCCCCCEEEEEeCCCCCCCCCCCCCcHhhhcceeeeeeeeeecccccCCCccccccccccceeeEEee
Q psy2547 191 TDVYCESRYSSNNPSSGGEVILRVLPPSLHHSNIDPYSSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQIQEKYYYAIT 270 (1807)
Q Consensus 191 ~~~~c~~~~s~~~p~~~g~v~~~~~~~~~~~~~~~~~s~~l~~~~~~t~~ri~~~~~~t~~~~~~~~~~~~~~~~~yai~ 270 (1807)
++|+||++||++.|+++|+|+|++|++++.....+ +||+||+|++||||||+|+|++|+|+++++.++.+.++|||||+
T Consensus 153 ~~v~Ct~~yS~~~P~~~g~V~f~~l~grP~~~~~~-~S~~Lq~~~~aT~lRi~l~~~~t~~~~~~~~~~~~~~~yyYAI~ 231 (237)
T PF00055_consen 153 DEVICTSRYSDIEPLTGGEVIFSLLEGRPSANDFD-PSPELQDWVTATNLRIRLTRLHTLGDELMDRDPKVLRSYYYAIS 231 (237)
T ss_dssp T---EESTTTTSSSTSTTEEEEESHHCCCCCTTHH-HSHHHHHHCEEEEEEEEEEE----TTSSCHH-TTTGGG---EEE
T ss_pred CcCeecCcCCCCcCccccceeeeeccCCCCCCcCC-CCHHHHhhhceeEEEEEEeeeccCCCcccCcCcccCccccEEEE
Confidence 99999999999999999999999998654443112 39999999999999999999999999999978899999999999
Q ss_pred ceeeee
Q psy2547 271 QMIVRG 276 (1807)
Q Consensus 271 ~~~v~g 276 (1807)
||.|+|
T Consensus 232 di~V~G 237 (237)
T PF00055_consen 232 DIQVGG 237 (237)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999998
No 8
>KOG3512|consensus
Probab=99.94 E-value=3.8e-27 Score=269.33 Aligned_cols=196 Identities=30% Similarity=0.697 Sum_probs=146.4
Q ss_pred CcCCCCCCCCCCcccchhhhccCCCccccccCCCCCCCCCCCccccccCCcCCCCCCC--CCCCCcccccCCCCCCC--C
Q psy2547 338 CKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEF--SDPEVCLRCDCDPGGSL--D 413 (1807)
Q Consensus 338 C~~C~Cn~ha~~C~~d~~~~~~~g~~~gg~C~~C~~nt~G~~C~~C~~g~~~~~~~~~--~~~~~C~~C~C~~~gs~--~ 413 (1807)
=.+|+|||||++|.||.. +.-+| +|+|||+|+.|++|||+||+.||... .+.+.|.+|+|+++++. .
T Consensus 275 gGRCKCNgHAs~Cv~d~~--------~~ltC-dC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrf 345 (592)
T KOG3512|consen 275 GGRCKCNGHASRCVMDES--------SHLTC-DCEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRF 345 (592)
T ss_pred eeeeeecCccceeeeccC--------CceEE-ecccCCCCCCcccccccccCCCccccccCCCccccccccchhhhhccc
Confidence 358999999999999862 23679 69999999999999999999999764 45678999999988762 1
Q ss_pred CCccCCCCCCCcCCcccc-cCCCCCCCCCCcCCCCccc---CCCCCCCCcccCCCCCCCCcCCCCCCCCCCCcccCCCcC
Q psy2547 414 DGICDPYTDDVLVSGKCH-CKPNVGGRRCDMCKDGFWN---FNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVE 489 (1807)
Q Consensus 414 ~~~C~~~~~~~~~~G~C~-Ck~~~~G~~Cd~C~~g~~~---~~~~~~~gC~~C~C~~~Gs~~~~~Cd~~~G~C~Ck~~v~ 489 (1807)
+..+.... .....|.|. |++|++|++|..|++|||. .+.++...|..|+|++.|++... |++.||||.||++|+
T Consensus 346 n~Ely~lS-gr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gkt-CNq~tGqCpCkeGvt 423 (592)
T KOG3512|consen 346 NMELYRLS-GRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKT-CNQTTGQCPCKEGVT 423 (592)
T ss_pred chhhhccc-CccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCccccccccc-ccccCCcccCCCCCc
Confidence 11111110 001246784 9999999999999999996 45667788999999999998764 999999999999999
Q ss_pred CCCcCcccCCccccCCcCCCCcccCCCCC--CCCCCCCCcccCCcccccCCCCCCCCCCC
Q psy2547 490 GRDCNQCLPHFWGLSESEEYGCKPCDCDP--GASYDNNCDVISGQCKCKPHASGRTCSTP 547 (1807)
Q Consensus 490 G~~Cd~C~~G~~~l~~~~~~GC~~C~C~~--~g~~~~~C~~~tGqC~Cr~~~~G~~C~~~ 547 (1807)
|..|++|++||+.-...- .-|..|.=+. .|+... ......|.||....|.++++.
T Consensus 424 G~tCnrCa~gyqqsrs~v-apcik~p~~~~~~~~s~v--e~qd~~s~Ck~~~~~~r~n~k 480 (592)
T KOG3512|consen 424 GLTCNRCAPGYQQSRSPV-APCIKIPTDAPTLGSSGV--EPQDQCSKCKASPGGKRLNQK 480 (592)
T ss_pred ccccccccchhhcccCCC-cCceecCCCCccccCCCC--cchhccccCCCCCcceecccc
Confidence 999999999999654321 2344443221 111111 123445678888888887764
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=1.1e-13 Score=195.85 Aligned_cols=217 Identities=12% Similarity=0.134 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhh---hccCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1215 EFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQI---MNNEDPNGVGKTLGNTTQRINLARLALNDLTEEIKKL 1291 (1807)
Q Consensus 1215 ~~~~le~~l~~lq~lL~~~~~~~~~~~~l~~~l~~l~~~l---~~~~~l~~~e~~l~~~~~~~~~~~~~le~L~~el~~l 1291 (1807)
.+......+..++..+..+..+...+..++..+..+..++ ........+...|...+.++..++.+++.|..++..+
T Consensus 448 ~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~ 527 (1311)
T TIGR00606 448 ILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQL 527 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666667777778888888888888888 2223334666777777777888888888888888877
Q ss_pred HHHHHH-----HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHH
Q psy2547 1292 NKTGEM-----LKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEEN 1366 (1807)
Q Consensus 1292 ~~~~~~-----l~~~~~~l~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~~i~~a~~~~~~a~~ll~~~~~~~~~~~~e~ 1366 (1807)
+..+.. ++++...-+...+..........+..+.. .+. .. ..+.++...+......++.....+++...++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~-~~--~~l~~~~~~~~~el~~~~~~~~~~~~el~~~ 603 (1311)
T TIGR00606 528 NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG-YFP-NK--KQLEDWLHSKSKEINQTRDRLAKLNKELASL 603 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC-Cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776653 11111111122222222222222222211 110 00 2233333333333333334344444555566
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHhhccCCCCCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHhhHhhhhhHHHHH
Q psy2547 1367 EKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLCGGAGCGKCGGMWCSNGTLSESNSAKDYAETSKKLINEKESKAE 1446 (1807)
Q Consensus 1367 ~~~L~~L~~kL~~l~~~L~~l~~~icg~~~~~C~~~Cgg~~C~~Cgg~~C~~~a~~~a~~A~~~a~~l~~~i~e~~~~~e 1446 (1807)
+..+..+++++..+..+|....+.|. +.| ...+|...|.+...+++...+
T Consensus 604 e~~l~~~~~~l~~~~~eL~~~~~~i~----~~~--------------------------~~~~~~~~L~~~~~~l~~~~~ 653 (1311)
T TIGR00606 604 EQNKNHINNELESKEEQLSSYEDKLF----DVC--------------------------GSQDEESDLERLKEEIEKSSK 653 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCC--------------------------CchhHHHHHHHHHHHHHHHHH
Confidence 66677777777777766776666663 112 123445555555556666666
Q ss_pred HHHHHHHHhhhhhhhhhhH
Q psy2547 1447 ELRKHMIILSESNSAKDYA 1465 (1807)
Q Consensus 1447 eL~~~~~~~~~~~~a~~~a 1465 (1807)
++....+...++..++..+
T Consensus 654 ~~~~~~~~~~~~~k~ie~a 672 (1311)
T TIGR00606 654 QRAMLAGATAVYSQFITQL 672 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6665555555555555554
No 10
>KOG4289|consensus
Probab=99.78 E-value=8.1e-19 Score=219.33 Aligned_cols=108 Identities=35% Similarity=0.947 Sum_probs=91.6
Q ss_pred ccccCCCccccccc-----ccCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCCccccCCCcccCCCCcCCCCccCCCC
Q psy2547 1048 QCPCLPNVIGVSCD-----RCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPN 1122 (1807)
Q Consensus 1048 ~C~C~~g~~G~~C~-----~C~~g~~~~~~~~~C~~c~C~~~gs~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~ 1122 (1807)
.|.|+|||+|.+|+ .|+.|+||++ -|.+|+|...--+.+ .||..+|||+||. +||-..
T Consensus 1740 ~C~C~~g~~G~~Ce~~~dq~CPrGWWG~P---~CgpC~CavsKgfdp-~CnKt~G~CqCKe------------~hy~~~- 1802 (2531)
T KOG4289|consen 1740 TCECPPGYTGPYCELRADQPCPRGWWGFP---TCGPCNCAVSKGFDP-DCNKTNGQCQCKE------------NHYRPI- 1802 (2531)
T ss_pred eEECCCcccCcchhhhccCCCCCcccCCC---CccCccccccCCCCC-CccccCcceeecc------------ccccCC-
Confidence 79999999999998 3999999965 599999998777788 9999999999884 445443
Q ss_pred CCCccCCCCCCCCCCCccccCCceEeccCCccccCCCcCCCCCccC-CCCCCC
Q psy2547 1123 VECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGT-APDCSP 1174 (1807)
Q Consensus 1123 ~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~-~~~C~~ 1174 (1807)
.+|.+|+|. .||.+..|+ .+|||.|+||..|++||+|..-|.-. ..+|++
T Consensus 1803 ~~Cl~CdC~-~Gs~Sr~C~-adGqC~C~pgaiGRqCdrCd~pfaevttlgCrv 1853 (2531)
T KOG4289|consen 1803 GSCLPCDCY-FGSDSRECD-ADGQCPCKPGAIGRQCDRCDNPFAEVTTLGCRV 1853 (2531)
T ss_pred Ccceeeccc-cCCCccccc-CCCcCCCCCccccccccccCChhhhccccCcEE
Confidence 369999999 899999999 99999999999999999998444332 247765
No 11
>KOG4289|consensus
Probab=99.77 E-value=4.5e-16 Score=195.29 Aligned_cols=121 Identities=40% Similarity=0.984 Sum_probs=89.4
Q ss_pred CccccCCCCCceeeecCCCCcCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCC
Q psy2547 931 DTCQLDPRSQDVICECKEGYRGTRCD-----GCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTE 1005 (1807)
Q Consensus 931 ~~C~~~~~~~~~~C~C~~g~~G~~Ce-----~C~~g~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~ 1005 (1807)
++|...+.+..+.|.|++||+|.+|| .|+.||||+| +|.||+|.-.-
T Consensus 1728 g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~~dq~CPrGWWG~P-----~CgpC~CavsK----------------------- 1779 (2531)
T KOG4289|consen 1728 GTCVRSPGAHGYTCECPPGYTGPYCELRADQPCPRGWWGFP-----TCGPCNCAVSK----------------------- 1779 (2531)
T ss_pred ceeecCCCCCceeEECCCcccCcchhhhccCCCCCcccCCC-----CccCccccccC-----------------------
Confidence 67877666677899999999999998 4777777766 46666554210
Q ss_pred CCCCCcccCCCCCCcccCCCCCCcCCCCCCCCCCCCCcCCCCccccCCCcccccccccCCCCcccCCCCCCCCCCCCCCC
Q psy2547 1006 GDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIG 1085 (1807)
Q Consensus 1006 G~~C~~C~~G~~G~~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~~~C~~c~C~~~g 1085 (1807)
| ....|+..+|+|+|+.+ ||.. ..+|.+|+|. .|
T Consensus 1780 ----------------------------g---fdp~CnKt~G~CqCKe~------------hy~~--~~~Cl~CdC~-~G 1813 (2531)
T KOG4289|consen 1780 ----------------------------G---FDPDCNKTNGQCQCKEN------------HYRP--IGSCLPCDCY-FG 1813 (2531)
T ss_pred ----------------------------C---CCCCccccCcceeeccc------------cccC--CCcceeeccc-cC
Confidence 1 11368888898887654 4543 2349999999 79
Q ss_pred CCCCCCccCCCCccccCCCcccCCCCcCCCCccCCCCCCCcc
Q psy2547 1086 SVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFP 1127 (1807)
Q Consensus 1086 s~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~~~C~~ 1127 (1807)
|.+. .|+ .+|||.|+||..|++|++|..-|--....||.+
T Consensus 1814 s~Sr-~C~-adGqC~C~pgaiGRqCdrCd~pfaevttlgCrv 1853 (2531)
T KOG4289|consen 1814 SDSR-ECD-ADGQCPCKPGAIGRQCDRCDNPFAEVTTLGCRV 1853 (2531)
T ss_pred CCcc-ccc-CCCcCCCCCccccccccccCChhhhccccCcEE
Confidence 9998 999 799999999999999999995554444447754
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=99.77 E-value=9.3e-13 Score=181.87 Aligned_cols=102 Identities=8% Similarity=0.115 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1605 GADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFL 1684 (1807)
Q Consensus 1605 ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~ 1684 (1807)
++..+++++++++..+++...+.+.++..+.++..++.++..++++++.++..++ .+.++..++.++..++++++..+.
T Consensus 538 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~ 616 (880)
T PRK02224 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKRE 616 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333444444444444444444444444444444 344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1685 QNGRSAMDVENEEKNLEKEVALA 1707 (1807)
Q Consensus 1685 ~~~~~~~~a~~~ae~a~~~a~~a 1707 (1807)
.++....++.+++.++..+++.+
T Consensus 617 ~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 617 ALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333334444444444444433
No 13
>KOG0161|consensus
Probab=99.74 E-value=7.8e-12 Score=172.12 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1759 QLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
.+.++.+.+.+++..+..++.++.+|+..++++.++++
T Consensus 1506 ~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le 1543 (1930)
T KOG0161|consen 1506 QKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALE 1543 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333344444444444444444333
No 14
>KOG0161|consensus
Probab=99.73 E-value=1.9e-11 Score=168.32 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=3.5
Q ss_pred CcHhhhc
Q psy2547 227 YSSDVQN 233 (1807)
Q Consensus 227 ~s~~l~~ 233 (1807)
||+.+..
T Consensus 131 Yt~~v~~ 137 (1930)
T KOG0161|consen 131 YTESVVR 137 (1930)
T ss_pred CCHHHHH
Confidence 5555443
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=99.72 E-value=6.3e-12 Score=173.69 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1613 VQKIVDVLTEARTAQDMAEVAIQTAKDDI 1641 (1807)
Q Consensus 1613 l~~l~~~L~~a~~~~~~a~~~l~~a~~~i 1641 (1807)
++.....+..+....+.+++++.++..++
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.71 E-value=4.3e-12 Score=181.82 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1483 FRGITTAKQESHAANILAKEAY 1504 (1807)
Q Consensus 1483 ~~~~~~~~~~~~~a~~~A~~~~ 1504 (1807)
+.++..+...+..|++.|....
T Consensus 527 l~dli~v~~~y~~Aie~~lg~~ 548 (1164)
T TIGR02169 527 VAQLGSVGERYATAIEVAAGNR 548 (1164)
T ss_pred HHHhcCcCHHHHHHHHHHhhhh
Confidence 4455555666777777666543
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.69 E-value=4e-11 Score=172.29 Aligned_cols=13 Identities=23% Similarity=0.435 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhhh
Q psy2547 1564 RANEINNVIKSLT 1576 (1807)
Q Consensus 1564 l~~~i~~~~~~L~ 1576 (1807)
+..++..+...+.
T Consensus 675 l~~e~~~l~~~~~ 687 (1179)
T TIGR02168 675 RRREIEELEEKIE 687 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 18
>KOG0996|consensus
Probab=99.68 E-value=5.5e-11 Score=151.73 Aligned_cols=8 Identities=0% Similarity=0.447 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy2547 1245 TTIDDMKK 1252 (1807)
Q Consensus 1245 ~~l~~l~~ 1252 (1807)
+++..+++
T Consensus 341 ~~~~~~~e 348 (1293)
T KOG0996|consen 341 EELEKIEE 348 (1293)
T ss_pred HHHHHHHh
Confidence 33333333
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.67 E-value=1.5e-10 Score=162.23 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1759 QLNETEAMFNSQESELTELSKNIAELQKRIQSCINF 1794 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~ 1794 (1807)
.|..++.+...+++++..++.++.+++.+++.+...
T Consensus 878 ~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 913 (1163)
T COG1196 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRER 913 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444333333333
No 20
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=8.6e-11 Score=166.71 Aligned_cols=18 Identities=6% Similarity=0.174 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2547 1214 KEFELLEKKIEDVKALVE 1231 (1807)
Q Consensus 1214 ~~~~~le~~l~~lq~lL~ 1231 (1807)
..+..++..+..+...+.
T Consensus 471 ~~~~~~~~~~~~~~~~~~ 488 (1311)
T TIGR00606 471 DRILELDQELRKAERELS 488 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666665554
No 21
>KOG0933|consensus
Probab=99.67 E-value=2.4e-10 Score=143.60 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=13.4
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhh
Q psy2547 1436 KLINEKESKAEELRKHMIILSESNS 1460 (1807)
Q Consensus 1436 ~~i~e~~~~~eeL~~~~~~~~~~~~ 1460 (1807)
+.+..++..+++|++++..+.+...
T Consensus 448 ~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 448 EELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3344555556666666655555443
No 22
>KOG0976|consensus
Probab=99.66 E-value=1e-10 Score=141.78 Aligned_cols=191 Identities=11% Similarity=0.076 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy2547 1608 STKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQ-- 1685 (1807)
Q Consensus 1608 ~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~-- 1685 (1807)
++..++.+++.+|.+++...+-..+.+++++++-+.+..+...+++.++..+..+..+.....+.+++|++++..+-.
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 444455566666666665555555556666666666666666666666666666666666666677777777665533
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q psy2547 1686 -NGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKL---KQLN 1761 (1807)
Q Consensus 1686 -~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~---~~l~ 1761 (1807)
.+..-+.+++++.++.++++.+...+-.+..++...+-..+..+.....+..+-.++...++.+....+.+. .+++
T Consensus 407 ~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~e 486 (1265)
T KOG0976|consen 407 QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYE 486 (1265)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHH
Confidence 333344555556666666555555555555444444443333333333344444445555554443333322 4445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1762 ETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1762 ~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
.|.....+..++++.++++|.+-.-.++.-+.++..+
T Consensus 487 mlKaen~rqakkiefmkEeiQethldyR~els~lA~r 523 (1265)
T KOG0976|consen 487 MLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHR 523 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555555666666666666555555555555444
No 23
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.66 E-value=1.5e-10 Score=162.43 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1281 LNDLTEEIKKLNKTGEMLKENATLL 1305 (1807)
Q Consensus 1281 le~L~~el~~l~~~~~~l~~~~~~l 1305 (1807)
+..+..++..++..++.+..+....
T Consensus 315 ~~~~~~~l~~~~~~L~~i~~~~~~y 339 (1201)
T PF12128_consen 315 LSALNADLARIKSELDEIEQQKKDY 339 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333333
No 24
>KOG3509|consensus
Probab=99.65 E-value=1.2e-13 Score=178.03 Aligned_cols=169 Identities=27% Similarity=0.646 Sum_probs=118.9
Q ss_pred ceeeecCCCCcCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCC
Q psy2547 941 DVICECKEGYRGTRCDGCLDNYFGNP--QERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFG 1018 (1807)
Q Consensus 941 ~~~C~C~~g~~G~~Ce~C~~g~~g~p--~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G 1018 (1807)
.-+|.|++||.|.+|+.|++||--.- .-..+.|..|.|+.++ ..|....+.|..|.+++.|.+|+.|.+||||
T Consensus 717 ~~~C~c~~g~~G~~ce~c~e~~~ls~t~~~~~~~~~~c~~~~h~-----~~c~~~~~~nt~~q~~~~~~~~~~~~~g~~~ 791 (964)
T KOG3509|consen 717 VEQCQCPKGLVGTSCEDCAEGYTLSTTGGLYPGLCEDCECNSHI-----SQCEDDLGYNTDCQNNTEGDRCELCSPGTYG 791 (964)
T ss_pred ccccccCccccCcccccccccccccccCCcCcccCcccccCCCc-----ccccccccccccccccCccceeeecCCCccc
Confidence 34899999999999999999986432 1123678899999987 4899999999999999999999999999999
Q ss_pred Cccc---CCCCCCcCCCCCCC----CCCCCCcCCCCccc-cCCCcccccccccCCCCcccCCC---CCCCCCCCCCCCCC
Q psy2547 1019 NALE---QNCTECTCNILGID----HSKGPCDRTTGQCP-CLPNVIGVSCDRCLKNHWKIASG---TGCEPCDCDPIGSV 1087 (1807)
Q Consensus 1019 ~~~~---~~C~~C~C~~~g~~----~~~~~C~~~tG~C~-C~~g~~G~~C~~C~~g~~~~~~~---~~C~~c~C~~~gs~ 1087 (1807)
++.. .+|.+ .|....-. ...-.++...-.|. |++|.+|.+|++|.++|+++++. ..|.++.+...+
T Consensus 792 da~~g~~~D~~p-~~~l~~~~~~~~r~~l~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~atdgS~~~~~~~~~~~~~-- 868 (964)
T KOG3509|consen 792 DARRGTPEDCRP-ATALTIQCSCNNRSPLSCDGFGPGCLLCPHNTEGTTCERVKAGYYGFATDGSPYDCSPCLLRGAS-- 868 (964)
T ss_pred cCccCCcccCCc-cchhhhhhhhcccCccccccCCCCcccCCCCccccchhhhccccccccCcCCccccccccCcccc--
Confidence 9864 34444 12222110 00123444444785 99999999999999999998653 346555443311
Q ss_pred CCCCccCC-CC---cc-ccCCCcccCCCCcCCCCccCC
Q psy2547 1088 DVTECNEY-TG---QC-QCKSGFGGRQCDQCQTNFWGN 1120 (1807)
Q Consensus 1088 ~~~~C~~~-tg---~C-~C~~g~~G~~C~~C~~g~~g~ 1120 (1807)
.|... .+ .| .++.|-.|+.++.|+.++|-+
T Consensus 869 ---~~~~~~r~p~~~~~~~p~~~q~~~~~~e~~~~~~~ 903 (964)
T KOG3509|consen 869 ---DCIVSGRGPQVTCRIPPQGLQGRNQNEEATGYYRD 903 (964)
T ss_pred ---ceeeccCCCCCCCCCCCccccccccccccCccccc
Confidence 23310 11 24 566677777778888887654
No 25
>KOG4674|consensus
Probab=99.64 E-value=2.1e-10 Score=155.12 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1644 ARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQ 1710 (1807)
Q Consensus 1644 ~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~ 1710 (1807)
++..+......+.++..+++.+...+..|+..+..++.++......+..++.+...-+.+..++...
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555666666666666555555555555555555555554444
No 26
>KOG0996|consensus
Probab=99.64 E-value=6.5e-10 Score=142.19 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhh
Q psy2547 1240 LTVMLTTIDDMKKQI 1254 (1807)
Q Consensus 1240 ~~~l~~~l~~l~~~l 1254 (1807)
+..+++.+......+
T Consensus 343 ~~~~~e~lk~~~ek~ 357 (1293)
T KOG0996|consen 343 LEKIEEGLKDENEKF 357 (1293)
T ss_pred HHHHHhHHHHHHHHh
Confidence 334444444444444
No 27
>KOG4674|consensus
Probab=99.60 E-value=2.2e-09 Score=145.47 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1735 KRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCI 1792 (1807)
Q Consensus 1735 ~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~ 1792 (1807)
...++++++++++.+..++......+.++..++....+.+..++.+...+.++...+.
T Consensus 1241 ~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1241 NLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555444444444444555555555555544444444444444444433
No 28
>KOG3509|consensus
Probab=99.59 E-value=8.1e-14 Score=179.52 Aligned_cols=194 Identities=25% Similarity=0.520 Sum_probs=140.1
Q ss_pred CCCcccCCCCcccCCCCcccCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCcccCCCCcccCCCCccCCCCCCCCCCCCC
Q psy2547 781 TSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWN 860 (1807)
Q Consensus 781 ~~~~c~~~~g~C~C~~~~~G~~C~~C~~g~~~~~~~~C~~C~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~~ 860 (1807)
....++..+.+|+|++++.|.+|+.|++||-.+...+| .
T Consensus 709 ~~~~~~~~~~~C~c~~g~~G~~ce~c~e~~~ls~t~~~-----------------------------------------~ 747 (964)
T KOG3509|consen 709 KTDIIAAEVEQCQCPKGLVGTSCEDCAEGYTLSTTGGL-----------------------------------------Y 747 (964)
T ss_pred CCchhhhhccccccCccccCcccccccccccccccCCc-----------------------------------------C
Confidence 44567899999999999999999999999876431110 1
Q ss_pred CCCCccCCCCCCCCCCCCCCCCccCCCCCccCCCCCcCCCCcccCCCCCCCCCCcCCCCCCCCCCCCccCCccccCCCCC
Q psy2547 861 YPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQ 940 (1807)
Q Consensus 861 ~~~C~~C~C~~~~~~Cd~~tg~C~~C~~~~~G~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~ 940 (1807)
...|..|.|+.|+..|....+.|..|++++.|.+|+.|.+||||++..+++.+|+| .|+..... +.+..++.. ..+.
T Consensus 748 ~~~~~~c~~~~h~~~c~~~~~~nt~~q~~~~~~~~~~~~~g~~~da~~g~~~D~~p-~~~l~~~~-~~~~r~~l~-~~~~ 824 (964)
T KOG3509|consen 748 PGLCEDCECNSHISQCEDDLGYNTDCQNNTEGDRCELCSPGTYGDARRGTPEDCRP-ATALTIQC-SCNNRSPLS-CDGF 824 (964)
T ss_pred cccCcccccCCCcccccccccccccccccCccceeeecCCCccccCccCCcccCCc-cchhhhhh-hhcccCccc-cccC
Confidence 12467799999999999999999999999999999999999999999999999988 34433220 011112221 1233
Q ss_pred ceee-ecCCCCcCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCC
Q psy2547 941 DVIC-ECKEGYRGTRCDGCLDNYFGNPQER-GGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFG 1018 (1807)
Q Consensus 941 ~~~C-~C~~g~~G~~Ce~C~~g~~g~p~~~-~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G 1018 (1807)
...| .|++|++|.+|+.|.+||+|++... ...|.++.+.+-++...++.=.+. .|-.+.-+..|.++..|+.|+|-
T Consensus 825 ~~~~~~~p~~~~g~~~~~~~~~~~~~atdgS~~~~~~~~~~~~~~~~~~~r~p~~--~~~~~p~~~q~~~~~~e~~~~~~ 902 (964)
T KOG3509|consen 825 GPGCLLCPHNTEGTTCERVKAGYYGFATDGSPYDCSPCLLRGASDCIVSGRGPQV--TCRIPPQGLQGRNQNEEATGYYR 902 (964)
T ss_pred CCCcccCCCCccccchhhhccccccccCcCCccccccccCccccceeeccCCCCC--CCCCCCccccccccccccCcccc
Confidence 4578 9999999999999999999998763 467888877663222222211111 23356667777777778888775
Q ss_pred Cc
Q psy2547 1019 NA 1020 (1807)
Q Consensus 1019 ~~ 1020 (1807)
+.
T Consensus 903 ~~ 904 (964)
T KOG3509|consen 903 DN 904 (964)
T ss_pred cc
Confidence 43
No 29
>KOG0933|consensus
Probab=99.57 E-value=7.8e-09 Score=130.40 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1735 KRARGQMLLNKASQLSVNTTAKL-KQLNETEAMFNSQESELTELSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1735 ~~~r~~~l~~~a~~l~~~~~~~~-~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l 1791 (1807)
.+.++++|+.+...+.+.+..+. .-|+..+.++.++...++.++.+-..+.+-|..+
T Consensus 963 are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~l 1020 (1174)
T KOG0933|consen 963 AREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKL 1020 (1174)
T ss_pred HHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35555555555555544432222 3334444444444444444444444444444333
No 30
>PRK01156 chromosome segregation protein; Provisional
Probab=99.56 E-value=9.4e-09 Score=142.30 Aligned_cols=21 Identities=5% Similarity=0.227 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2547 1654 DLDDAQQKSNETNVKVKLLQE 1674 (1807)
Q Consensus 1654 ~l~~~e~~l~~~e~~l~~l~~ 1674 (1807)
++..+..++..+...+.+++.
T Consensus 588 ~l~e~~~~l~~l~~~l~~le~ 608 (895)
T PRK01156 588 RSNEIKKQLNDLESRLQEIEI 608 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 333333344444444444443
No 31
>KOG0964|consensus
Probab=99.56 E-value=2.4e-08 Score=125.49 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1273 RINLARLALNDLTEEIKKLNKTGEMLKE 1300 (1807)
Q Consensus 1273 ~~~~~~~~le~L~~el~~l~~~~~~l~~ 1300 (1807)
++...+.+++.+..++.+|+..+..|.+
T Consensus 259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ 286 (1200)
T KOG0964|consen 259 ALDKVEDESEDLKCEIKELENKLTNLRE 286 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444444455555555444444333
No 32
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=99.56 E-value=8.3e-08 Score=117.21 Aligned_cols=40 Identities=5% Similarity=0.133 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2547 1761 NETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSN 1800 (1807)
Q Consensus 1761 ~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~ 1800 (1807)
+.|.+++..-..++..++-.|..|+.+++++.....+..+
T Consensus 618 k~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~ 657 (786)
T PF05483_consen 618 KALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETD 657 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444555555555555555555555444444333
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.53 E-value=9.6e-09 Score=144.40 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=4.1
Q ss_pred hHHHHHHHHHH
Q psy2547 1441 KESKAEELRKH 1451 (1807)
Q Consensus 1441 ~~~~~eeL~~~ 1451 (1807)
+..++..++..
T Consensus 447 ~~~~l~~l~~~ 457 (1201)
T PF12128_consen 447 LKSELAELKQQ 457 (1201)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 34
>KOG0250|consensus
Probab=99.53 E-value=1.3e-08 Score=131.28 Aligned_cols=55 Identities=9% Similarity=0.155 Sum_probs=21.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1600 NLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITND 1654 (1807)
Q Consensus 1600 ~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~ 1654 (1807)
+.++.++..+++++..++..+.+++..++..+..++.+...+.++++++.....+
T Consensus 664 e~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~e 718 (1074)
T KOG0250|consen 664 EDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAE 718 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433333333333333333333333
No 35
>KOG0250|consensus
Probab=99.52 E-value=3.2e-09 Score=136.82 Aligned_cols=26 Identities=15% Similarity=-0.144 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1492 ESHAANILAKEAYDHAASVRNKTAAY 1517 (1807)
Q Consensus 1492 ~~~~a~~~A~~~~~~a~~~~~~~e~~ 1517 (1807)
....|+++++.-..++..+.+..++.
T Consensus 509 KWa~aIE~~L~n~lnaFiv~sh~D~~ 534 (1074)
T KOG0250|consen 509 KWALAIERCLGNLLNAFIVTSHKDAR 534 (1074)
T ss_pred HHHHHHHHHHHHhhhhheeCCHhhHH
Confidence 45667778888888888887777755
No 36
>KOG0976|consensus
Probab=99.52 E-value=1.5e-08 Score=123.62 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1272 QRINLARLALNDLTEEIKKLNKTGEMLKENATLL 1305 (1807)
Q Consensus 1272 ~~~~~~~~~le~L~~el~~l~~~~~~l~~~~~~l 1305 (1807)
..+..+++++..++.+|..|+.....+..+...+
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~ekq~l 125 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKL 125 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555544444444333
No 37
>KOG0964|consensus
Probab=99.50 E-value=9.9e-08 Score=120.05 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=15.9
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHh
Q psy2547 1427 AKDYAETSKKLINEKESKAEELRKHMIIL 1455 (1807)
Q Consensus 1427 A~~~a~~l~~~i~e~~~~~eeL~~~~~~~ 1455 (1807)
..+.+..+...+..++..+.+|..+.+..
T Consensus 354 l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~ 382 (1200)
T KOG0964|consen 354 LVDEEKRLKKRLAKLEQKQRDLLAKQGRY 382 (1200)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444455555666666666666555433
No 38
>KOG0971|consensus
Probab=99.49 E-value=1.3e-07 Score=117.43 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhcccchhHHHhhccCCCCCCCCCCCCCCCCCCC
Q psy2547 1334 TEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLCGGAGCGKCGG 1413 (1807)
Q Consensus 1334 ~~~~i~~a~~~~~~a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~~l~~~L~~l~~~icg~~~~~C~~~Cgg~~C~~Cgg 1413 (1807)
+++..+......+++.+++++...++ +++....+.|++++..++..+.+++++|-.+
T Consensus 387 LRDlsA~ek~d~qK~~kelE~k~sE~----~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA------------------- 443 (1243)
T KOG0971|consen 387 LRDLSASEKQDHQKLQKELEKKNSEL----EELRRQKERLSRELDQAESTIADLKEQVDAA------------------- 443 (1243)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 33444445555566666666654433 3444556788889999999999999998322
Q ss_pred cccCCchhHHHHHHHHHHHHhhHhhhhhHHHHHHHH
Q psy2547 1414 MWCSNGTLSESNSAKDYAETSKKLINEKESKAEELR 1449 (1807)
Q Consensus 1414 ~~C~~~a~~~a~~A~~~a~~l~~~i~e~~~~~eeL~ 1449 (1807)
-||-..++...++..+|++++..++..+++|.
T Consensus 444 ----lGAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 444 ----LGAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred ----hcHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 24445555555555566666666666655553
No 39
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.47 E-value=5.6e-08 Score=126.44 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1605 GADSTKNTVQKIVDVLTEARTAQDMAE 1631 (1807)
Q Consensus 1605 ea~~l~~~l~~l~~~L~~a~~~~~~a~ 1631 (1807)
++..++.+++.+...|+.+...++...
T Consensus 337 ~~~~Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 337 EAEMLQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333333333
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.47 E-value=3.1e-08 Score=126.90 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHH
Q psy2547 1419 GTLSESNSAKDYAETSKKLINEKESKAEELRKHM 1452 (1807)
Q Consensus 1419 ~a~~~a~~A~~~a~~l~~~i~e~~~~~eeL~~~~ 1452 (1807)
.|+..|..|...+....+.++++..++..++..+
T Consensus 155 ~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l 188 (522)
T PF05701_consen 155 AALKQAEEAVSAAEENEEKVEELSKEIIALKESL 188 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555666666655555544
No 41
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.46 E-value=1e-07 Score=124.14 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1715 RSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQ 1770 (1807)
Q Consensus 1715 ~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~ 1770 (1807)
...+..++..+..........+.++..|...+..+..+-..+..+|..|++.+++.
T Consensus 547 ~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~ 602 (775)
T PF10174_consen 547 RDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKA 602 (775)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 33444444444444444555555555555555555555555555555555554443
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.44 E-value=4.1e-07 Score=127.00 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2547 1760 LNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSN 1800 (1807)
Q Consensus 1760 l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~ 1800 (1807)
...|++++...+.+|+.++.+|..+++++..++..|...+.
T Consensus 1076 ~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~ 1116 (1486)
T PRK04863 1076 RNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777777777777777777766665544
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.43 E-value=2.2e-08 Score=130.24 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1643 AARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETD 1722 (1807)
Q Consensus 1643 ~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~ 1722 (1807)
.+++++..++..+..+...++......+.++.+++++..++..+.....++.+.+..+...-.++++.++.+..++..++
T Consensus 352 ~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 352 QLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333333333344444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2547 1723 NKLLSK--AESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSN 1800 (1807)
Q Consensus 1723 ~~l~~~--~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~ 1800 (1807)
..+... ...-......+..+.++++.+..+++..--.+.+++++++....+++.+..+...|...+..+...|+. .+
T Consensus 432 r~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-~n 510 (569)
T PRK04778 432 RYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-AN 510 (569)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 333321 011122344444555555555555555334466777788888888888888888888888888888877 55
Q ss_pred hcC
Q psy2547 1801 NYK 1803 (1807)
Q Consensus 1801 ~Y~ 1803 (1807)
+|+
T Consensus 511 Rfr 513 (569)
T PRK04778 511 RYR 513 (569)
T ss_pred ccC
Confidence 564
No 44
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=99.42 E-value=3.8e-06 Score=103.11 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2547 1777 LSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1777 le~el~~L~~el~~l~~~I~ 1796 (1807)
++.+|..+..++..+...|.
T Consensus 744 LE~ELs~lk~el~slK~QLk 763 (786)
T PF05483_consen 744 LELELSNLKNELSSLKKQLK 763 (786)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444443
No 45
>KOG4643|consensus
Probab=99.40 E-value=3.1e-07 Score=116.13 Aligned_cols=147 Identities=13% Similarity=0.127 Sum_probs=60.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1600 NLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSI 1679 (1807)
Q Consensus 1600 ~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~l 1679 (1807)
+.+..+.+.+++.+.++.+.+.+.+...+.+..+..++..+++.....+.+-+.+ ...++.+.....++....+++
T Consensus 411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e----~e~~~q~ls~~~Q~~~et~el 486 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLE----NEELDQLLSLQDQLEAETEEL 486 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----hHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444444444444444444444333322221111 111112222222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy2547 1680 QAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLS 1750 (1807)
Q Consensus 1680 k~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~ 1750 (1807)
..++..+...+.....++..+....+++++++.+....|+.+.++++.+.+.+.....+-..|+.++..|.
T Consensus 487 ~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 487 LNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444443
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.40 E-value=4.2e-07 Score=126.95 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=22.3
Q ss_pred HHhhhHhhhhHHHHHHHHHHHHHHHHhhhcccchhHHH
Q psy2547 1353 TKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNEL 1390 (1807)
Q Consensus 1353 ~~~~~~~~~~~~e~~~~L~~L~~kL~~l~~~L~~l~~~ 1390 (1807)
.....+|.+..++.+..+.+++.++..++..+..+++.
T Consensus 441 e~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666667777776666555555543
No 47
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.38 E-value=8.1e-08 Score=125.01 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=9.5
Q ss_pred CCCcchhHHHHHHHHHHHH
Q psy2547 1207 GASGAYTKEFELLEKKIED 1225 (1807)
Q Consensus 1207 ~~~~~~~~~~~~le~~l~~ 1225 (1807)
..+|.....|..|.++-.+
T Consensus 57 ~l~Ges~~~f~~w~~~~~~ 75 (569)
T PRK04778 57 NLTGQSEEKFEEWRQKWDE 75 (569)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 4444445555555554444
No 48
>KOG0978|consensus
Probab=99.38 E-value=3.1e-06 Score=107.25 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1678 SIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKL 1757 (1807)
Q Consensus 1678 ~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~ 1757 (1807)
.+..++.++......+...+..++.+...+......+..++......++.......++...+..|+.+++....+++...
T Consensus 507 ~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~ 586 (698)
T KOG0978|consen 507 KLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQ 586 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333334444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l 1791 (1807)
..+.+++.+++........+++++..|..+++.+
T Consensus 587 ~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 587 EQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444455555555555443
No 49
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.37 E-value=1.9e-07 Score=119.76 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1326 KLKEQSTETEKQINDAERQCKRTENLVTKTF 1356 (1807)
Q Consensus 1326 ~a~~~~~~~~~~i~~a~~~~~~a~~ll~~~~ 1356 (1807)
.++..+..+...+..++..+..+...|..++
T Consensus 38 ~~qeel~~~k~~l~~~E~~k~~~l~ELe~ak 68 (522)
T PF05701_consen 38 KAQEELAKLKEQLEAAEREKAQALSELESAK 68 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555554443
No 50
>KOG4673|consensus
Probab=99.36 E-value=1.2e-06 Score=106.39 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy2547 1780 NIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1780 el~~L~~el~~l~~~I~~ 1797 (1807)
++++|.-.|.++.+.+..
T Consensus 933 e~EELrlDl~dlK~mYk~ 950 (961)
T KOG4673|consen 933 ELEELRLDLVDLKEMYKE 950 (961)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333333333333333333
No 51
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=99.36 E-value=2.8e-07 Score=119.41 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=8.5
Q ss_pred CCcchhHHHHHHHHHHHHH
Q psy2547 1208 ASGAYTKEFELLEKKIEDV 1226 (1807)
Q Consensus 1208 ~~~~~~~~~~~le~~l~~l 1226 (1807)
.+|.....|..|.++-.+|
T Consensus 54 l~Gqt~~~fe~w~~~w~~i 72 (560)
T PF06160_consen 54 LTGQTEEKFEEWRQKWDEI 72 (560)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3444444455554444443
No 52
>KOG4593|consensus
Probab=99.34 E-value=8.1e-06 Score=101.37 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy2547 1773 ELTELSKNIAELQKRIQSCINFIVDKSNNY 1802 (1807)
Q Consensus 1773 ~le~le~el~~L~~el~~l~~~I~~~~~~Y 1802 (1807)
++.++..++..++++...+.+-...++.-|
T Consensus 601 ev~qlk~ev~s~ekr~~rlk~vF~~ki~eF 630 (716)
T KOG4593|consen 601 EVAQLKKEVESAEKRNQRLKEVFASKIQEF 630 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666665544
No 53
>KOG0018|consensus
Probab=99.31 E-value=8.6e-07 Score=113.82 Aligned_cols=76 Identities=9% Similarity=0.252 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1605 GADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQ 1680 (1807)
Q Consensus 1605 ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk 1680 (1807)
++..++..+..++..+..++..++..+..+...+.+++..+..|..+..++..++.++...+..+++|+.+++.++
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ve 752 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVE 752 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443444444444444444444444444444444444444455544444443
No 54
>PF13514 AAA_27: AAA domain
Probab=99.30 E-value=1.1e-05 Score=113.99 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhcccchhHHHh
Q psy2547 1370 LQRLNEKITSLEKNLPDLNELI 1391 (1807)
Q Consensus 1370 L~~L~~kL~~l~~~L~~l~~~i 1391 (1807)
+..++.++.+....+..+...+
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~ 383 (1111)
T PF13514_consen 362 LAQARRELEEAERELEQLQAEL 383 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 55
>PF13514 AAA_27: AAA domain
Probab=99.30 E-value=4.3e-06 Score=117.79 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1267 LGNTTQRINLARLALNDLTEEIKKLNKTGEMLKENATLL 1305 (1807)
Q Consensus 1267 l~~~~~~~~~~~~~le~L~~el~~l~~~~~~l~~~~~~l 1305 (1807)
+..+.++...+...+..+..++.++...+..+..+...+
T Consensus 348 i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l 386 (1111)
T PF13514_consen 348 IRELLQEREQLEQALAQARRELEEAERELEQLQAELAAL 386 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333344444444455555555555555555444444443
No 56
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=99.29 E-value=7.7e-07 Score=115.30 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1760 LNETEAMFNSQESELTELSKNIAELQKR 1787 (1807)
Q Consensus 1760 l~~Le~~i~~~e~~le~le~el~~L~~e 1787 (1807)
|..+.+.+......++.+..+...+-..
T Consensus 467 m~~v~~~l~~a~~~v~~L~~~t~~li~~ 494 (560)
T PF06160_consen 467 MDEVNKQLEEAEDDVETLEEKTEELIDN 494 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 57
>KOG0962|consensus
Probab=99.29 E-value=3.6e-06 Score=111.97 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=20.9
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHHhhhhhhhhhhH
Q psy2547 1428 KDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYA 1465 (1807)
Q Consensus 1428 ~~~a~~l~~~i~e~~~~~eeL~~~~~~~~~~~~a~~~a 1465 (1807)
..+...|+....+++....++.+......++.++++.+
T Consensus 634 ~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~ 671 (1294)
T KOG0962|consen 634 DEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIA 671 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 34555554444555555556666556666666665433
No 58
>KOG4643|consensus
Probab=99.28 E-value=2.8e-05 Score=99.08 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy2547 1323 TSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNE 1389 (1807)
Q Consensus 1323 ~~~~a~~~~~~~~~~i~~a~~~~~~a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~~l~~~L~~l~~ 1389 (1807)
.+..++.++..++..+.+....+.+....|+..+..+.+.++++..-+.+ ......+.+++..+.+
T Consensus 178 elAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e-a~ra~~yrdeldalre 243 (1195)
T KOG4643|consen 178 ELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE-AHRADRYRDELDALRE 243 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHH
Confidence 44566666666666666666666677777777777777766665543332 2333334334444443
No 59
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.26 E-value=4e-09 Score=121.67 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=123.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1601 LTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQ 1680 (1807)
Q Consensus 1601 ~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk 1680 (1807)
.+..++..+...+..+...|+.++..+..+...|..+.....+..+.+..+++.......++..++.++..+...+++..
T Consensus 33 ~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e 112 (237)
T PF00261_consen 33 KAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAE 112 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444555555555555555555555555555566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1681 AGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQL 1760 (1807)
Q Consensus 1681 ~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l 1760 (1807)
.++.++..++..+...++.+..+++.++..+.+|+..+..+.+.+............+...+..++..|...+.....+.
T Consensus 113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra 192 (237)
T PF00261_consen 113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA 192 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666667777777766666666666666666666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1761 NETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1761 ~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
..++.++..++.+++.++.+|...+.+...+...|..-
T Consensus 193 e~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 193 EFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777776666666443
No 60
>KOG0018|consensus
Probab=99.26 E-value=6.4e-06 Score=106.06 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=4.6
Q ss_pred HHHHHHHHhcc
Q psy2547 1224 EDVKALVENTT 1234 (1807)
Q Consensus 1224 ~~lq~lL~~~~ 1234 (1807)
.++-.+++.++
T Consensus 143 kElt~LFEEIS 153 (1141)
T KOG0018|consen 143 KELTALFEEIS 153 (1141)
T ss_pred HHHHHHHHHHh
Confidence 33444444443
No 61
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.24 E-value=5.9e-09 Score=120.28 Aligned_cols=199 Identities=9% Similarity=0.108 Sum_probs=144.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1598 KANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLK 1677 (1807)
Q Consensus 1598 ~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le 1677 (1807)
++..+..++..+...++.+...|..+...+..+++...+....++.+..+.......+..++.++..+...+.+...+++
T Consensus 37 e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 37 EVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555555566666666666666666666777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1678 SIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKL 1757 (1807)
Q Consensus 1678 ~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~ 1757 (1807)
++..++..+...+..+..+++.+..++..++..+..+...++.++...............++..|..+++.+...++...
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE 196 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAE 196 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888888888888888888888888877777776666667777788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
+.+..|+.++..++..|.....+...+..+|+....+|.
T Consensus 197 ~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888777664
No 62
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.23 E-value=7.9e-06 Score=115.98 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1274 INLARLALNDLTEEIKKLNKTGEMLKENATLLQ 1306 (1807)
Q Consensus 1274 ~~~~~~~le~L~~el~~l~~~~~~l~~~~~~l~ 1306 (1807)
+.....+++.++.++..+..+.+.+..+...++
T Consensus 292 ~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 292 LETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333334444434344444444443
No 63
>KOG0962|consensus
Probab=99.22 E-value=3.3e-05 Score=103.15 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhhcccc
Q psy2547 1369 ALQRLNEKITSLEKNLP 1385 (1807)
Q Consensus 1369 ~L~~L~~kL~~l~~~L~ 1385 (1807)
.|+.++.++......+.
T Consensus 639 ~le~l~~eie~~rk~l~ 655 (1294)
T KOG0962|consen 639 LLERLKGEIEKARKDLA 655 (1294)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34444444444433333
No 64
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=99.20 E-value=2.4e-05 Score=94.52 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1607 DSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKD 1639 (1807)
Q Consensus 1607 ~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~ 1639 (1807)
+.++..++.+..+|...++.+......+.++.+
T Consensus 378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444444443333333333333
No 65
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.19 E-value=1.3e-06 Score=108.13 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1753 TTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1753 ~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
+.+..++|.+|+..+.-...+-+++.++-.+|..-|+.++..|..-
T Consensus 412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666555555555555555555555555555555443
No 66
>KOG4673|consensus
Probab=99.13 E-value=0.00011 Score=89.97 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1731 SSGLKRARGQMLLNKAS---QLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1731 ~l~~~~~r~~~l~~~a~---~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
++..+..+.+.|+.++. .+..++++..++..++-..+-+.-.+++++.-+|..|+..++..+++|-.+
T Consensus 888 ElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk~QIdeLl~~ 958 (961)
T KOG4673|consen 888 ELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYKEQIDELLNK 958 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 33333333444443333 335555555566666666677777788888888888888888777777554
No 67
>KOG4593|consensus
Probab=99.11 E-value=0.00016 Score=90.28 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy2547 1779 KNIAELQKRIQSCINFIVDKS 1799 (1807)
Q Consensus 1779 ~el~~L~~el~~l~~~I~~~~ 1799 (1807)
.++.+|++++.......+.=+
T Consensus 600 ~ev~qlk~ev~s~ekr~~rlk 620 (716)
T KOG4593|consen 600 KEVAQLKKEVESAEKRNQRLK 620 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777666555433
No 68
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.10 E-value=1.2e-11 Score=166.00 Aligned_cols=123 Identities=11% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1605 GADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFL 1684 (1807)
Q Consensus 1605 ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~ 1684 (1807)
++..+..+++++...+..+..+...++..+.++...+..+......+......++.++..++..|++....++.+..++.
T Consensus 610 r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~k 689 (859)
T PF01576_consen 610 RLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAK 689 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555444444444444444444444444333333344444444444444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1685 QNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLS 1727 (1807)
Q Consensus 1685 ~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~ 1727 (1807)
.....+..+..++.........++..-..|+.++++++.++.+
T Consensus 690 ka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e 732 (859)
T PF01576_consen 690 KAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEE 732 (859)
T ss_dssp -------------------------------------------
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333344444444444433
No 69
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=99.10 E-value=0.00018 Score=92.89 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHh
Q psy2547 1324 SLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITS 1379 (1807)
Q Consensus 1324 ~~~a~~~~~~~~~~i~~a~~~~~~a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~~ 1379 (1807)
+..+++...-+...+.++...+.-++..|+.+...+...++. ...|+++|..
T Consensus 130 i~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReq----k~~LrkEL~~ 181 (717)
T PF09730_consen 130 IKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQ----KNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 333444444445555666666666666666655554433333 3456666665
No 70
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=99.09 E-value=3.4e-05 Score=93.38 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=8.0
Q ss_pred chhHHHHHHHHHHHHHhh
Q psy2547 1237 SHDLTVMLTTIDDMKKQI 1254 (1807)
Q Consensus 1237 ~~~~~~l~~~l~~l~~~l 1254 (1807)
+..+..+.....++....
T Consensus 62 e~~Fe~Wrq~W~di~~~~ 79 (570)
T COG4477 62 ETKFEEWRQKWDDIVTNS 79 (570)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444544444444333
No 71
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.08 E-value=1e-05 Score=100.31 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1752 NTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1752 ~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
++.++...|+-+..+-+++..+-+++...|..|+.++..+.++..+.
T Consensus 418 el~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~ 464 (546)
T PF07888_consen 418 ELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKE 464 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 33334444444445555555566666666666666666665554433
No 72
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.07 E-value=7.8e-05 Score=106.13 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1267 LGNTTQRINLARLALNDLTEEIKKLNKTGEMLKENATLL 1305 (1807)
Q Consensus 1267 l~~~~~~~~~~~~~le~L~~el~~l~~~~~~l~~~~~~l 1305 (1807)
+..+..++..+..+++..+.++.++++.+..+.++...+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l 316 (1353)
T TIGR02680 278 YDQLSRDLGRARDELETAREEERELDARTEALEREADAL 316 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555554444444
No 73
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.07 E-value=0.00027 Score=98.79 Aligned_cols=9 Identities=67% Similarity=1.789 Sum_probs=4.4
Q ss_pred CCCCCCCCCC
Q psy2547 1396 GDPCDNLCGG 1405 (1807)
Q Consensus 1396 ~~~C~~~Cgg 1405 (1807)
|+||+ +||.
T Consensus 503 GePCP-VCGS 511 (1047)
T PRK10246 503 GQPCP-LCGS 511 (1047)
T ss_pred CCCcC-CCCc
Confidence 45663 4443
No 74
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.06 E-value=2.4e-11 Score=163.17 Aligned_cols=187 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1613 VQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMD 1692 (1807)
Q Consensus 1613 l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~ 1692 (1807)
+.++..+++.+......+.+.+..+...|.+++..+.......+.+...+..++.++..+..+++++...+.........
T Consensus 555 l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~ 634 (859)
T PF01576_consen 555 LNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQ 634 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444444444444555555555555444444333334
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q psy2547 1693 VENEEKNLEKEVALAQKQAS-------GLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTA-------KLK 1758 (1807)
Q Consensus 1693 a~~~ae~a~~~a~~ae~~l~-------el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~-------~~~ 1758 (1807)
+..++.++..++..+..... .+..++..++..+++....+..+..+++.....+..+..++.. ...
T Consensus 635 aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~ 714 (859)
T PF01576_consen 635 AESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEK 714 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444332222 2333333333333333333333333333333333333222221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhh
Q psy2547 1759 QLNETEAMFNSQESELTELSK--------NIAELQKRIQSCINFIVDKS 1799 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~le~--------el~~L~~el~~l~~~I~~~~ 1799 (1807)
.-..|+.+++.+..+|++++. .|..|+.+|..+...|....
T Consensus 715 ~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~ 763 (859)
T PF01576_consen 715 EKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQ 763 (859)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHH
Confidence 223445555555555554432 35566666666666665543
No 75
>KOG0979|consensus
Probab=99.06 E-value=0.0001 Score=94.92 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNI 1781 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el 1781 (1807)
.+|.+|+..+....+.++.+.+++
T Consensus 870 ~el~~l~~~~~~~~~~le~i~~kl 893 (1072)
T KOG0979|consen 870 DELRELETKLEKLSEDLERIKDKL 893 (1072)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHH
Confidence 444444444444444444433333
No 76
>KOG0971|consensus
Probab=99.06 E-value=6.6e-06 Score=102.91 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2547 1664 ETNVKVKLLQERLKSI 1679 (1807)
Q Consensus 1664 ~~e~~l~~l~~~le~l 1679 (1807)
+++.++..|+..|.++
T Consensus 459 nlEekVklLeetv~dl 474 (1243)
T KOG0971|consen 459 NLEEKVKLLEETVGDL 474 (1243)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 77
>KOG0612|consensus
Probab=99.05 E-value=3.8e-06 Score=109.26 Aligned_cols=6 Identities=83% Similarity=1.891 Sum_probs=2.3
Q ss_pred ccCCCC
Q psy2547 846 TYGREC 851 (1807)
Q Consensus 846 ~~G~~C 851 (1807)
.+|+-|
T Consensus 257 ~yG~ec 262 (1317)
T KOG0612|consen 257 EYGREC 262 (1317)
T ss_pred ccCCcc
Confidence 334333
No 78
>PTZ00121 MAEBL; Provisional
Probab=99.02 E-value=0.00058 Score=89.88 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=6.5
Q ss_pred CCCCCCCccccccCCc
Q psy2547 373 HNTEGRNCERCKQYFY 388 (1807)
Q Consensus 373 ~nt~G~~C~~C~~g~~ 388 (1807)
.+-.|..|-|=.|.+|
T Consensus 247 ~~df~n~CFR~LP~~F 262 (2084)
T PTZ00121 247 GKDFNNECFLNLPILF 262 (2084)
T ss_pred CccCCcchhhcchHhh
Confidence 3334444444444443
No 79
>KOG1225|consensus
Probab=98.99 E-value=2e-09 Score=132.84 Aligned_cols=202 Identities=35% Similarity=0.839 Sum_probs=127.4
Q ss_pred CCcccCCCCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCccCCCCCccCCCCCc--CCCCcccCCCCCCCCCC
Q psy2547 837 SGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCER--CINGYYGDPRLGIDIPC 914 (1807)
Q Consensus 837 ~g~C~C~~g~~G~~C~~C~~g~~~~~~C~~C~C~~~~~~Cd~~tg~C~~C~~~~~G~~Ce~--C~~G~~G~~~~~~~~~C 914 (1807)
.+.|.+.+++.|..| |+|+. ++.|.+|+ .-.++.|+ +..+++|..|-. |..-++... -|
T Consensus 160 ~~~c~~~~~~~~~~~-----g~~~~----~~~~~~hg---~~~~~~~l-~~~~~s~~~~~~~~~~~~~~~~~------r~ 220 (525)
T KOG1225|consen 160 NGVCSLKPNPFGAEC-----GQYKC----PNDGSGHG---RYYFGNCL-SGISASGETCNQLGCNDDCFRTG------RC 220 (525)
T ss_pred cccccccCCcccccc-----ceecC----CcCCCCCc---cceecccc-cccCcchhhhhcccCCccceecc------cc
Confidence 467888888888655 44553 34555554 22456776 788888888842 222222221 12
Q ss_pred cCCCCCCCCCCCCccCCccccCCCCCceeeecCCCCcCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q psy2547 915 RPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDG--CLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDT 992 (1807)
Q Consensus 915 ~~c~C~~~~~~~~~~~~~C~~~~~~~~~~C~C~~g~~G~~Ce~--C~~g~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~ 992 (1807)
...+|- ......+++|.|+.+|+|..|.. |..+-+|. +.|.
T Consensus 221 ~~~~~~--------------~~~~~~~~ic~c~~~~~g~~c~~~~C~~~c~~~-----g~c~------------------ 263 (525)
T KOG1225|consen 221 REGRCF--------------CTAGFFDGICECPEGYFGPLCSTIYCPGGCTGR-----GQCV------------------ 263 (525)
T ss_pred ccCccc--------------ccccccCceeecCCceeCCccccccCCCCCccc-----ceEe------------------
Confidence 222221 11122345899999999999983 76655443 2222
Q ss_pred CCcccccCCCCCCCCCCCcccCCCCCCcccCCCCCCcCCCCCCCCCCCCCcCCCCccccCCCcccccccccCCCCcccCC
Q psy2547 993 LTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIAS 1072 (1807)
Q Consensus 993 ~tG~C~~C~~~~~G~~C~~C~~G~~G~~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~ 1072 (1807)
.|+|+ |.+||+|..|+. ..|. ..|+..+ .| +.|+|+|+++|.|..|+.
T Consensus 264 -~G~CI-C~~Gf~G~dC~e-----------~~Cp-~~cs~~g------~~--~~g~CiC~~g~~G~dCs~---------- 311 (525)
T KOG1225|consen 264 -EGRCI-CPPGFTGDDCDE-----------LVCP-VDCSGGG------VC--VDGECICNPGYSGKDCSI---------- 311 (525)
T ss_pred -CCeEe-CCCCCcCCCCCc-----------ccCC-cccCCCc------ee--cCCEeecCCCcccccccc----------
Confidence 47786 777777777753 1221 1233322 22 567999999999999974
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCccccCCCcccCCCCcCCCCccCCCCCCCccCCCCCCCCCCCccccCCceEeccCC
Q psy2547 1073 GTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQG 1152 (1807)
Q Consensus 1073 ~~~C~~c~C~~~gs~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g 1152 (1807)
..| +-+|.+.| .|. .|+|.|.+||+|..|..= .|... ++| +.| |.|+.|
T Consensus 312 -~~c-padC~g~G-----~Ci--~G~C~C~~Gy~G~~C~~~---------------~C~~~----g~c--v~g-C~C~~G 360 (525)
T KOG1225|consen 312 -RRC-PADCSGHG-----KCI--DGECLCDEGYTGELCIQR---------------ACSGG----GQC--VNG-CKCKKG 360 (525)
T ss_pred -ccC-CccCCCCC-----ccc--CCceEeCCCCcCCccccc---------------ccCCC----cee--ccC-ceeccC
Confidence 233 34777777 898 899999999999999861 13332 355 578 999999
Q ss_pred ccccC
Q psy2547 1153 IGGVR 1157 (1807)
Q Consensus 1153 ~~G~~ 1157 (1807)
|.|..
T Consensus 361 w~G~d 365 (525)
T KOG1225|consen 361 WRGPD 365 (525)
T ss_pred ccCCC
Confidence 99988
No 80
>KOG0612|consensus
Probab=98.98 E-value=9.9e-06 Score=105.54 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=11.5
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHH
Q psy2547 1427 AKDYAETSKKLINEKESKAEELR 1449 (1807)
Q Consensus 1427 A~~~a~~l~~~i~e~~~~~eeL~ 1449 (1807)
+.....+|.+.++.++....+|+
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554
No 81
>KOG0995|consensus
Probab=98.97 E-value=6.5e-05 Score=91.92 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=25.2
Q ss_pred hhHhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1434 SKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQE 1492 (1807)
Q Consensus 1434 l~~~i~e~~~~~eeL~~~~~~~~~~~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~ 1492 (1807)
+..+++.++...++|..++..+....+.+...++....+++-..+.+....++...++.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~ 291 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence 34445556666666665555333333333333333333333333333333333333333
No 82
>PTZ00121 MAEBL; Provisional
Probab=98.97 E-value=0.00089 Score=88.22 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=6.3
Q ss_pred CCCCCCCCCCcccc
Q psy2547 370 SCEHNTEGRNCERC 383 (1807)
Q Consensus 370 ~C~~nt~G~~C~~C 383 (1807)
+|..+++-.+=.+|
T Consensus 282 nC~s~~~d~n~~rC 295 (2084)
T PTZ00121 282 NCLSGNSDQGFERC 295 (2084)
T ss_pred hhhhcccccCCcce
Confidence 45544443444444
No 83
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=98.95 E-value=1.9e-07 Score=110.04 Aligned_cols=190 Identities=18% Similarity=0.256 Sum_probs=129.0
Q ss_pred hhccc-ccCCCcchhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhh-hccCCchhhhhhhhhhHHHHHHH
Q psy2547 1200 ASNIK-QTGASGAYTKEFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQI-MNNEDPNGVGKTLGNTTQRINLA 1277 (1807)
Q Consensus 1200 ~~~~~-~~~~~~~~~~~~~~le~~l~~lq~lL~~~~~~~~~~~~l~~~l~~l~~~l-~~~~~l~~~e~~l~~~~~~~~~~ 1277 (1807)
+.++. .+|+.++...-...+++...+++............+..++..+..|..++ .+.++...+......+......+
T Consensus 6 l~~~n~~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t 85 (264)
T PF06008_consen 6 LQSVNALTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERT 85 (264)
T ss_pred HhcCcchhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 34443333333333444444444444444444455666666666666666 44444455555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1278 RLALNDLTEEIKKLNKTGEMLKENATLLQEN----NVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVT 1353 (1807)
Q Consensus 1278 ~~~le~L~~el~~l~~~~~~l~~~~~~l~~~----~~~~a~~~~~~a~~~~~~a~~~~~~~~~~i~~a~~~~~~a~~ll~ 1353 (1807)
......|...+..+...+.++.+++..+... ..........++..++.+++.+- +......|+.++..|+.+++
T Consensus 86 ~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~ 163 (264)
T PF06008_consen 86 LQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLS 163 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHH
Confidence 7777777778888888888888887776551 11223335566677777776663 66677789999999999999
Q ss_pred HhhhHhhhhHHHHHHHHHHHHHHHHhhhcccchhHHHh
Q psy2547 1354 KTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELI 1391 (1807)
Q Consensus 1354 ~~~~~~~~~~~e~~~~L~~L~~kL~~l~~~L~~l~~~i 1391 (1807)
++...|...+.+++..++.+++.|.++..+|.+++..+
T Consensus 164 ~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l 201 (264)
T PF06008_consen 164 RVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLL 201 (264)
T ss_pred HHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988999999999999999999988
No 84
>KOG1225|consensus
Probab=98.93 E-value=5e-09 Score=129.49 Aligned_cols=203 Identities=33% Similarity=0.825 Sum_probs=127.0
Q ss_pred CCCcccCCCCcccCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCcccCCCCcccCCCCccCCCCCC--CCCCCCCCCCCc
Q psy2547 788 LGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQ--CSPGYWNYPTCQ 865 (1807)
Q Consensus 788 ~~g~C~C~~~~~G~~C~~C~~g~~~~~~~~C~~C~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~--C~~g~~~~~~C~ 865 (1807)
..+.|.+.+++.|..| |+|+. +++|..+| .-..++|.+..++.|..|.. |..-.+....|.
T Consensus 159 ~~~~c~~~~~~~~~~~-----g~~~~------~~~~~~hg------~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~r~~ 221 (525)
T KOG1225|consen 159 KNGVCSLKPNPFGAEC-----GQYKC------PNDGSGHG------RYYFGNCLSGISASGETCNQLGCNDDCFRTGRCR 221 (525)
T ss_pred hcccccccCCcccccc-----ceecC------CcCCCCCc------cceecccccccCcchhhhhcccCCccceeccccc
Confidence 3577899999998875 45554 33455554 23467899999999998864 333333322233
Q ss_pred cCCCCCCCCCCCCCCCCccCCCCCccCCCCCcCCCCcccCCCCCCCCCCcCCCCCCCCCCCCccCCccccCCCCCceeee
Q psy2547 866 RCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICE 945 (1807)
Q Consensus 866 ~C~C~~~~~~Cd~~tg~C~~C~~~~~G~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~~~~C~ 945 (1807)
.+.|. |..+..+..| .|..||+|.. |..-.|+.+- ++ .+.|. .+.|.
T Consensus 222 ~~~~~---------------~~~~~~~~ic-~c~~~~~g~~-------c~~~~C~~~c-~~---~g~c~------~G~CI 268 (525)
T KOG1225|consen 222 EGRCF---------------CTAGFFDGIC-ECPEGYFGPL-------CSTIYCPGGC-TG---RGQCV------EGRCI 268 (525)
T ss_pred cCccc---------------ccccccCcee-ecCCceeCCc-------cccccCCCCC-cc---cceEe------CCeEe
Confidence 33222 3344444444 3566666643 3333444331 11 13442 57899
Q ss_pred cCCCCcCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCCCcccC
Q psy2547 946 CKEGYRGTRCDG--CLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQ 1023 (1807)
Q Consensus 946 C~~g~~G~~Ce~--C~~g~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~~~ 1023 (1807)
|++||+|..|+. |.. .|+++ +.| +.|+|+ |.++|.|..|+. .
T Consensus 269 C~~Gf~G~dC~e~~Cp~----------------~cs~~------g~~--~~g~Ci-C~~g~~G~dCs~-----------~ 312 (525)
T KOG1225|consen 269 CPPGFTGDDCDELVCPV----------------DCSGG------GVC--VDGECI-CNPGYSGKDCSI-----------R 312 (525)
T ss_pred CCCCCcCCCCCcccCCc----------------ccCCC------cee--cCCEee-cCCCcccccccc-----------c
Confidence 999999999996 532 13332 122 357886 888888888752 2
Q ss_pred CCCCCcCCCCCCCCCCCCCcCCCCccccCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCCccccCC
Q psy2547 1024 NCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKS 1103 (1807)
Q Consensus 1024 ~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~~~C~~c~C~~~gs~~~~~C~~~tg~C~C~~ 1103 (1807)
.|. =+|++. +.|+ .|+|.|.+||+|..|.+ . +|...| .|. .| |.|+.
T Consensus 313 ~cp-adC~g~------G~Ci--~G~C~C~~Gy~G~~C~~-----------~-----~C~~~g-----~cv--~g-C~C~~ 359 (525)
T KOG1225|consen 313 RCP-ADCSGH------GKCI--DGECLCDEGYTGELCIQ-----------R-----ACSGGG-----QCV--NG-CKCKK 359 (525)
T ss_pred cCC-ccCCCC------Cccc--CCceEeCCCCcCCcccc-----------c-----ccCCCc-----eec--cC-ceecc
Confidence 222 245554 4787 89999999999999986 1 356655 675 67 99999
Q ss_pred CcccCC
Q psy2547 1104 GFGGRQ 1109 (1807)
Q Consensus 1104 g~~G~~ 1109 (1807)
||.|++
T Consensus 360 Gw~G~d 365 (525)
T KOG1225|consen 360 GWRGPD 365 (525)
T ss_pred CccCCC
Confidence 999998
No 85
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=98.91 E-value=0.00083 Score=84.12 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1716 SRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQL-NETEAMFNSQESELTELSKNIAELQ 1785 (1807)
Q Consensus 1716 ~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l-~~Le~~i~~~e~~le~le~el~~L~ 1785 (1807)
++|.+++..+.+...+-.++..-+.+++.++..-+....+..+.. +....+...+.++|.+++++-+-+-
T Consensus 589 E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerdkNl~l 659 (739)
T PF07111_consen 589 EQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELERDKNLML 659 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344444444444444444444444555544443332222222111 1223344455555555555444443
No 86
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.91 E-value=4.4e-06 Score=95.80 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1752 NTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1752 ~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
++..+...|.+-+.+++.++.+..-++.++++|++-...
T Consensus 246 ~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~ 284 (499)
T COG4372 246 QIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284 (499)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444333
No 87
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.91 E-value=3.7e-09 Score=141.58 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy2547 1768 NSQESELTELSKNIAELQKRIQSCINFIVDKSNNY 1802 (1807)
Q Consensus 1768 ~~~e~~le~le~el~~L~~el~~l~~~I~~~~~~Y 1802 (1807)
.....++.++..+|..+++++..+..-...++..|
T Consensus 602 ~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eF 636 (722)
T PF05557_consen 602 ESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEF 636 (722)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777788888888777777776544
No 88
>KOG0517|consensus
Probab=98.88 E-value=0.0021 Score=86.80 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHh--hhhccCCCHHHHHHHHHHHHHHH
Q psy2547 1516 AYVASTSNITKQLDEFLNAPGATLADIRNISGLA--VNKNIQSNPEQIRERANEINNVI 1572 (1807)
Q Consensus 1516 ~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~v--l~~~i~~~~~~I~~l~~~i~~~~ 1572 (1807)
.++.++..+++.-++|+....+.-+.|+.+...- +-.+-....+.|.+..+.|....
T Consensus 1194 ~sle~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~ 1252 (2473)
T KOG0517|consen 1194 DSLEEAEALLKRHRDFLTTMDANDEKIEALVDTGDKLVSEGHIDSDKIREKAQSILARR 1252 (2473)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 4477888888888888876655555555433222 11133445666666666555444
No 89
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=98.87 E-value=0.00086 Score=81.68 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy2547 1324 SLKLKEQSTETEK 1336 (1807)
Q Consensus 1324 ~~~a~~~~~~~~~ 1336 (1807)
+.++++.+..++.
T Consensus 101 Lvevre~L~~irr 113 (531)
T PF15450_consen 101 LVEVREALTQIRR 113 (531)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 90
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=98.87 E-value=0.00075 Score=82.17 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhH
Q psy2547 1558 PEQIRERANEINNVIKSLTDI 1578 (1807)
Q Consensus 1558 ~~~I~~l~~~i~~~~~~L~~~ 1578 (1807)
..++.+++..+.+.+..+..+
T Consensus 307 ~sk~eeL~~~L~~~lea~q~a 327 (531)
T PF15450_consen 307 ESKAEELATKLQENLEAMQLA 327 (531)
T ss_pred HhhHHHHHHHHHHHHHHHHHh
Confidence 455666666666665554433
No 91
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.87 E-value=3.5e-05 Score=88.29 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhH
Q psy2547 1468 SKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISG 1547 (1807)
Q Consensus 1468 a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~ 1547 (1807)
.....+.+..++.++...+.....+.++..+.+.+..+.-..+...+...+..+.++....+.+. ..+.++..++..-.
T Consensus 39 ~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~ 117 (294)
T COG1340 39 LAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIE 117 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHH
Confidence 44455566667777777777777777777777777777777777777777777777777666663 22334444443333
Q ss_pred Hh--hhhccCCCHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy2547 1548 LA--VNKNIQSNPEQIRERANEINNVIKSLTDIDTIL 1582 (1807)
Q Consensus 1548 ~v--l~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~l 1582 (1807)
.+ .....+.+++.-..+++.|..+...|..+...+
T Consensus 118 ~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~ 154 (294)
T COG1340 118 RLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKAL 154 (294)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 233456677777777777777776666555443
No 92
>KOG0977|consensus
Probab=98.87 E-value=6.8e-06 Score=101.80 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1692 DVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNK----ASQLSVNTTAKLKQLNETEAMF 1767 (1807)
Q Consensus 1692 ~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~----a~~l~~~~~~~~~~l~~Le~~i 1767 (1807)
+++..++......+.+++++..+...+..+..++.+++.....+..+++.|..+ .+.+...+.++..+|..+..+.
T Consensus 279 ~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec 358 (546)
T KOG0977|consen 279 EIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREEC 358 (546)
T ss_pred HHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 333333333334444445555555555555555555544444444444444433 3344555566667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2547 1768 NSQESELTELSKNIAELQKRIQSCINFIVDKSN 1800 (1807)
Q Consensus 1768 ~~~e~~le~le~el~~L~~el~~l~~~I~~~~~ 1800 (1807)
..+..++++|-+--..|..+|..++..|.....
T Consensus 359 ~~l~~Elq~LlD~ki~Ld~EI~~YRkLLegee~ 391 (546)
T KOG0977|consen 359 QQLSVELQKLLDTKISLDAEIAAYRKLLEGEEE 391 (546)
T ss_pred HHHHHHHHHhhchHhHHHhHHHHHHHHhccccC
Confidence 777777777777666777777777766655443
No 93
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.87 E-value=1.4e-05 Score=91.79 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1732 SGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1732 l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~ 1797 (1807)
+.......+++..++......+..+..+|..-++.|.+.+++++.++.+..-|++++..++...+.
T Consensus 219 la~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~ 284 (499)
T COG4372 219 LARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555555556666666666666666666666666666666666666655443
No 94
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.82 E-value=7.9e-05 Score=96.16 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1467 TSKKLINEKEAKAEEVFRGITTA 1489 (1807)
Q Consensus 1467 ~a~~~l~~~~~~~~~l~~~~~~~ 1489 (1807)
+++..++.+..++.-+..++.++
T Consensus 125 ~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 125 GLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655555554
No 95
>KOG1003|consensus
Probab=98.81 E-value=4e-06 Score=88.70 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1620 LTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKN 1699 (1807)
Q Consensus 1620 L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~ 1699 (1807)
++.++..+..+..++.++.....+..+.+..+++.....+.+++.++.++++.+...++..+++.++..++.-+..+++.
T Consensus 20 le~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~ 99 (205)
T KOG1003|consen 20 LDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELER 99 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333333333333444444444444444445555555555556666666666555566666666666666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1700 LEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSK 1779 (1807)
Q Consensus 1700 a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~ 1779 (1807)
+..+++..+..+.+|...+..+.+.+......-+....+......+++.+..++.+...+-+..++.+..++..++.++.
T Consensus 100 ~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~ 179 (205)
T KOG1003|consen 100 AEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEE 179 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHH
Confidence 77777777777777766666666655555444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2547 1780 NIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1780 el~~L~~el~~l~~~I 1795 (1807)
.+.....+...+.+.|
T Consensus 180 kl~~~k~ky~~~~~eL 195 (205)
T KOG1003|consen 180 KLEEAKEKYEEAKKEL 195 (205)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4444444444444433
No 96
>KOG0999|consensus
Probab=98.81 E-value=0.0012 Score=79.54 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1468 SKKLINEKEAKAEEVFRGITT-------AKQESHAANILAKEAYDHAASVRNKTAAY 1517 (1807)
Q Consensus 1468 a~~~l~~~~~~~~~l~~~~~~-------~~~~~~~a~~~A~~~~~~a~~~~~~~e~~ 1517 (1807)
++..++.+..++.-+..++.+ +..++++|++-++..+++-...+..++.+
T Consensus 199 lkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~ 255 (772)
T KOG0999|consen 199 LKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQY 255 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 455555555554444433333 23455667777777777777777766665
No 97
>PRK11637 AmiB activator; Provisional
Probab=98.80 E-value=3e-06 Score=107.18 Aligned_cols=60 Identities=8% Similarity=0.223 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1604 AGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSN 1663 (1807)
Q Consensus 1604 ~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~ 1663 (1807)
.++.+++.++.+++.++..+..++..++.+|..++.+|..++.+|..++.++..++.+++
T Consensus 61 ~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 61 KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333
No 98
>KOG0979|consensus
Probab=98.80 E-value=0.0018 Score=84.01 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1765 AMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1765 ~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
.+++..+++|..++.++..+...++.+.++|.+-
T Consensus 863 q~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ 896 (1072)
T KOG0979|consen 863 QQYEVREDELRELETKLEKLSEDLERIKDKLSDV 896 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhH
Confidence 3444444455555555555555555554444443
No 99
>KOG0999|consensus
Probab=98.79 E-value=0.0014 Score=78.99 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1277 ARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEG--ALELTRQ-------AHDTSLKLKEQSTETEKQINDAERQCKR 1347 (1807)
Q Consensus 1277 ~~~~le~L~~el~~l~~~~~~l~~~~~~l~~~~~~~--a~~~~~~-------a~~~~~~a~~~~~~~~~~i~~a~~~~~~ 1347 (1807)
.+.+...|+.+|++....-..|..+...+.+.++.- ...+++. +..++..+++...=+...+.++.+.+..
T Consensus 147 ~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~I 226 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEI 226 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666666655555555555554444321 1222222 2222333333333333444455555555
Q ss_pred HHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhh
Q psy2547 1348 TENLVTKTFPQFTQGQEENEKALQRLNEKITSL 1380 (1807)
Q Consensus 1348 a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~~l 1380 (1807)
++..|+.+...+....+. ...|+++|..+
T Consensus 227 AekQlEEALeTlq~EReq----k~alkkEL~q~ 255 (772)
T KOG0999|consen 227 AEKQLEEALETLQQEREQ----KNALKKELSQY 255 (772)
T ss_pred HHHHHHHHHHHHHhHHHH----HHHHHHHHHHh
Confidence 555555554333322222 33455666554
No 100
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=98.78 E-value=0.0021 Score=80.68 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhcccchhHHH
Q psy2547 1368 KALQRLNEKITSLEKNLPDLNEL 1390 (1807)
Q Consensus 1368 ~~L~~L~~kL~~l~~~L~~l~~~ 1390 (1807)
..+..|..+..+++..|..+...
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~~ 184 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLETR 184 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666555554443
No 101
>KOG0517|consensus
Probab=98.78 E-value=0.0042 Score=84.10 Aligned_cols=44 Identities=9% Similarity=0.244 Sum_probs=25.1
Q ss_pred cHhhhcceeeeeeeeeecccccCCCccccccccc------cceeeEEeeceeee
Q psy2547 228 SSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQI------QEKYYYAITQMIVR 275 (1807)
Q Consensus 228 s~~l~~~~~~t~~ri~~~~~~t~~~~~~~~~~~~------~~~~~yai~~~~v~ 275 (1807)
..+...|++...|++.....|.. +|..... +--.=|-|.||+|-
T Consensus 109 vdKaLqFLkeqkVhLEniGshDI----VDGN~rL~LGLIWTIILRFQIq~I~ie 158 (2473)
T KOG0517|consen 109 VDKALQFLKEQKVHLENIGSHDI----VDGNHRLILGLIWTIILRFQIQDISIE 158 (2473)
T ss_pred hHHHHHHHHhcccccccCCcccc----cCCcchhhHHHHHHHHHheeeeeeEee
Confidence 45667788887777766555432 2221100 01123679999997
No 102
>KOG0963|consensus
Probab=98.78 E-value=0.00033 Score=86.68 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2547 1595 LKRKANLTKAGADSTKNTVQKIVDVLTEART 1625 (1807)
Q Consensus 1595 L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~ 1625 (1807)
+..+.+.++..|..++.+++.+..++..+..
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555555555555555555555544444
No 103
>KOG0995|consensus
Probab=98.77 E-value=0.00026 Score=86.82 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy2547 1558 PEQIRERANEINNV 1571 (1807)
Q Consensus 1558 ~~~I~~l~~~i~~~ 1571 (1807)
.++++.+..+..++
T Consensus 331 ~~dve~mn~Er~~l 344 (581)
T KOG0995|consen 331 GEDVERMNLERNKL 344 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 104
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.77 E-value=6.3e-09 Score=88.92 Aligned_cols=49 Identities=43% Similarity=1.162 Sum_probs=43.6
Q ss_pred cCCCCCCCCcCCCCCCCCCCCcccCCCcCCCCcCcccCCccccCCcCCCCc
Q psy2547 461 PCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGC 511 (1807)
Q Consensus 461 ~C~C~~~Gs~~~~~Cd~~~G~C~Ck~~v~G~~Cd~C~~G~~~l~~~~~~GC 511 (1807)
+|.|++.|+++. .|++.+|+|.||++|+|++||+|++|||+++.. +.+|
T Consensus 1 ~C~C~~~g~~~~-~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~~-~~~C 49 (50)
T cd00055 1 PCDCNGHGSLSG-QCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQ-GGGC 49 (50)
T ss_pred CCcCcCCCCCCc-cccCCCCEEeCCCcCCCCCCCCCCCCCccCCCC-CCCC
Confidence 589999999875 499999999999999999999999999999865 4565
No 105
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.76 E-value=5.9e-09 Score=87.15 Aligned_cols=40 Identities=45% Similarity=1.229 Sum_probs=37.5
Q ss_pred CCCCCCCCcCCCCCCCCCCCcccCCCcCCCCcCcccCCccc
Q psy2547 462 CTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWG 502 (1807)
Q Consensus 462 C~C~~~Gs~~~~~Cd~~~G~C~Ck~~v~G~~Cd~C~~G~~~ 502 (1807)
|.|++.|+++. .|++.+|+|.||++|+|++|++|++|||+
T Consensus 1 C~C~~~G~~~~-~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSASG-TCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCCCC-cccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 78999999874 49999999999999999999999999999
No 106
>KOG1003|consensus
Probab=98.76 E-value=9.8e-06 Score=85.84 Aligned_cols=191 Identities=10% Similarity=0.105 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1606 ADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQ 1685 (1807)
Q Consensus 1606 a~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~ 1685 (1807)
+..++.+++..+..+..+..++..+.+.-.+....++.+..+..+.+..++.++.+|..+.....+...+.+++-.++..
T Consensus 13 i~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~i 92 (205)
T KOG1003|consen 13 IQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVI 92 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444455444444455555555555555666666666666665556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1686 NGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEA 1765 (1807)
Q Consensus 1686 ~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~ 1765 (1807)
+...+..+...++.+..+..++..++..+...++.+...-+............++.+-.+++......+...+.++.|++
T Consensus 93 iE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 93 IEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 66666666677777777777777777766666666666555555556666666666666666666666777777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1766 MFNSQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1766 ~i~~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
.+..++..+.....+...+.+.|......|+
T Consensus 173 e~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 173 ERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888877777788888877777664
No 107
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.76 E-value=0.0021 Score=79.31 Aligned_cols=188 Identities=16% Similarity=0.244 Sum_probs=100.5
Q ss_pred HHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2547 1529 DEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADS 1608 (1807)
Q Consensus 1529 k~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~ 1608 (1807)
+.|+..-......++.+++. +..+|++.+.|.+....+......+...+- .-++.+.+++.-.-.+...
T Consensus 909 ~~fI~qhG~tls~LEpia~~-----LqsDPe~~e~L~~~y~qA~~~q~q~~qq~F------AL~dv~qRr~HF~Y~ds~~ 977 (1480)
T COG3096 909 ARFIQQHGNTLSKLEPIASV-----LQSDPEQFEQLKEDYAQAQQMQRQARQQAF------ALTEVVQRRAHFSYSDSAE 977 (1480)
T ss_pred HHHHHHhcchHHhhhhHHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhcccccchhhh
Confidence 34555555555666666553 345678888887766655544433322211 1122222322222211111
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
Q psy2547 1609 TKNT----VQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKL------------L 1672 (1807)
Q Consensus 1609 l~~~----l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~------------l 1672 (1807)
+..+ -+++++.|.+++.....+..++++.+.++.+-.+-+.+++.........++++...+.+ .
T Consensus 978 ~l~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA 1057 (1480)
T COG3096 978 MLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERA 1057 (1480)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHH
Confidence 1111 13344445555555555555555555555555555555555555555555555555544 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1673 QERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLS 1727 (1807)
Q Consensus 1673 ~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~ 1727 (1807)
+.+.+++...+...+.+...++.++...+.+++.+.+.+.+++..|..+...+-.
T Consensus 1058 ~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~ 1112 (1480)
T COG3096 1058 RIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVT 1112 (1480)
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455666666666666666777777777777777777777777777766654433
No 108
>KOG0977|consensus
Probab=98.76 E-value=1.2e-05 Score=99.75 Aligned_cols=54 Identities=13% Similarity=0.297 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1609 TKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKS 1662 (1807)
Q Consensus 1609 l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l 1662 (1807)
...++......|.+++..+..++..++.+++++..++++...+..++..+..++
T Consensus 139 ~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 139 AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444433
No 109
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=98.75 E-value=0.00094 Score=87.65 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1642 SAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQET 1721 (1807)
Q Consensus 1642 ~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~ 1721 (1807)
..+...+...+.+++.++.+|.+++..|.+++.+|+.++..-......+.......+.+..++..++.++.++..++..+
T Consensus 606 ~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~L 685 (769)
T PF05911_consen 606 EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSL 685 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444433333333333333333344444444444455555555555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2547 1722 DNKLLSKAESSGLKRARGQMLLNKASQL 1749 (1807)
Q Consensus 1722 ~~~l~~~~~~l~~~~~r~~~l~~~a~~l 1749 (1807)
+..++.....-.+...+-..|+.++...
T Consensus 686 e~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 686 EEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 5555444444444444444555444444
No 110
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.75 E-value=9.2e-05 Score=87.21 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHhhHhhhhhHHHHHHHHHHHHHhhhh
Q psy2547 1431 AETSKKLINEKESKAEELRKHMIILSES 1458 (1807)
Q Consensus 1431 a~~l~~~i~e~~~~~eeL~~~~~~~~~~ 1458 (1807)
..+|+..++..+.+++.|+.+...+...
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444555555555555555444333
No 111
>KOG0963|consensus
Probab=98.73 E-value=0.00012 Score=90.51 Aligned_cols=33 Identities=9% Similarity=0.293 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1692 DVENEEKNLEKEVALAQKQASGLRSRYQETDNK 1724 (1807)
Q Consensus 1692 ~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~ 1724 (1807)
-+-.+++.++.++..|+.+++.|..++...+..
T Consensus 239 lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 239 LIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344455555566666666666555555554443
No 112
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.73 E-value=3.4e-09 Score=90.37 Aligned_cols=49 Identities=39% Similarity=1.055 Sum_probs=41.5
Q ss_pred CCCCCCCCcCCCCCCCCCCCcccCCCcCCCCcCcccCCccccCCcCCCCc
Q psy2547 462 CTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGC 511 (1807)
Q Consensus 462 C~C~~~Gs~~~~~Cd~~~G~C~Ck~~v~G~~Cd~C~~G~~~l~~~~~~GC 511 (1807)
|.|++.|+++. .|++.+|+|.||++|+|++||+|++|||+++...+.+|
T Consensus 1 C~C~~~~~~~~-~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~~~~~~C 49 (49)
T PF00053_consen 1 CDCNPHGSSSQ-TCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPSDPPCGC 49 (49)
T ss_dssp ESSTTCCBCCS-SEEETCEEESBSTTEESTTS-EE-TTEECSTTSGCCSE
T ss_pred CcCcCCCCCCC-cccCCCCEEeccccccCCcCcCCCCccccccCCCCCCC
Confidence 78999998874 49999999999999999999999999999987665554
No 113
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.70 E-value=0.00012 Score=89.15 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1593 NDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISA 1643 (1807)
Q Consensus 1593 ~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~ 1643 (1807)
+.++.+.+........++.++..++..++.+..+...++..+..++.+|.-
T Consensus 85 ~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 85 EDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 333334444344444444555555555554444444444444444444443
No 114
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.70 E-value=8.6e-06 Score=107.51 Aligned_cols=57 Identities=11% Similarity=0.104 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1714 LRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQ 1770 (1807)
Q Consensus 1714 l~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~ 1770 (1807)
+..++.++++.+......+.....+...++.+++++.....+...+|+.++.+++++
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 333333333333333333434444444444444444333333333333333333333
No 115
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.69 E-value=8.8e-09 Score=137.66 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1716 SRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLK----QLNETEAMFNSQESELTELSKNI 1781 (1807)
Q Consensus 1716 ~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~----~l~~Le~~i~~~e~~le~le~el 1781 (1807)
.++.+++..+..+...+.....+.+...++++...+.++.+.+ ++..|.+++....++++.++.++
T Consensus 576 ~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~ 645 (713)
T PF05622_consen 576 QKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKEL 645 (713)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444455555555555544443 33444444444444444444444
No 116
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.69 E-value=6.5e-05 Score=86.15 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy2547 1640 DISAAR 1645 (1807)
Q Consensus 1640 ~i~~~~ 1645 (1807)
++..++
T Consensus 166 ei~~lk 171 (294)
T COG1340 166 EIDELK 171 (294)
T ss_pred HHHHHH
Confidence 333333
No 117
>KOG1029|consensus
Probab=98.67 E-value=0.00019 Score=88.98 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1746 ASQLSVNTTAKLKQLNETEAMF 1767 (1807)
Q Consensus 1746 a~~l~~~~~~~~~~l~~Le~~i 1767 (1807)
+..+.++.+.++.+|..+..++
T Consensus 551 ldelskE~esk~~eidi~n~ql 572 (1118)
T KOG1029|consen 551 LDELSKETESKLNEIDIFNNQL 572 (1118)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 3333333444443333333333
No 118
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.65 E-value=2.1e-05 Score=102.76 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAELQKRIQSCIN 1793 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~ 1793 (1807)
..|-+..++++..+..+...+.||.+|+++|.++..
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555566666666666666666666666666554
No 119
>KOG0946|consensus
Probab=98.64 E-value=3.2e-05 Score=96.69 Aligned_cols=74 Identities=9% Similarity=0.165 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1649 SQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETD 1722 (1807)
Q Consensus 1649 ~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~ 1722 (1807)
.+.+.++...+.++..+..+++.+...++.+...-..+......++.++..++.+.+.....++++.+++..++
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 33333333333333333333333333333333222223333334444444444444444444444444444443
No 120
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.64 E-value=2.7e-08 Score=83.19 Aligned_cols=41 Identities=71% Similarity=1.443 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCcccCCCCcccCCCCcccCCCCCCCCCCcCC
Q psy2547 773 CDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGF 813 (1807)
Q Consensus 773 c~C~~~gs~~~~c~~~~g~C~C~~~~~G~~C~~C~~g~~~~ 813 (1807)
|+|++.|+.+..|++.+|+|.|++||+|++|++|++||||.
T Consensus 1 C~C~~~G~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g~ 41 (46)
T smart00180 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGD 41 (46)
T ss_pred CcCCCCCCCCCcccCCCCEEECCCCCCCCCCCcCCCCcCCC
Confidence 78999999888999999999999999999999999999993
No 121
>KOG0946|consensus
Probab=98.64 E-value=4.6e-05 Score=95.36 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1620 LTEARTAQDMAEVAIQTAKDDISAARKDLSQI 1651 (1807)
Q Consensus 1620 L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~i 1651 (1807)
+.+..+.+...+.++++.+.+++..-.+++.+
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~ 832 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAA 832 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333334444444443333333333
No 122
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.63 E-value=0.00073 Score=92.18 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1425 NSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAY 1504 (1807)
Q Consensus 1425 ~~A~~~a~~l~~~i~e~~~~~eeL~~~~~~~~~~~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~ 1504 (1807)
+...++++++++.++...++.+++++++....... ..+. ....+.++++++.+...++.+.+++..+...++.++.
T Consensus 61 ~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~--~~~~--~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~ 136 (1109)
T PRK10929 61 KGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP--RSVP--PNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREIS 136 (1109)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc--cccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44455556666666666666666666654321111 1111 0111234444444455555555555444444443333
Q ss_pred HHH
Q psy2547 1505 DHA 1507 (1807)
Q Consensus 1505 ~~a 1507 (1807)
...
T Consensus 137 ~~l 139 (1109)
T PRK10929 137 DSL 139 (1109)
T ss_pred HHH
Confidence 333
No 123
>KOG1218|consensus
Probab=98.60 E-value=2.6e-06 Score=103.88 Aligned_cols=283 Identities=31% Similarity=0.695 Sum_probs=177.3
Q ss_pred cccCCCCcccCCCCcccCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCcccCCCCcccCCCCccCCCCCC-CCCCCCCCC
Q psy2547 784 YCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQ-CSPGYWNYP 862 (1807)
Q Consensus 784 ~c~~~~g~C~C~~~~~G~~C~~C~~g~~~~~~~~C~~C~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~-C~~g~~~~~ 862 (1807)
.+....++|.|.++|+|+ ..|.....+. .-+..|.+ ...++.|.+..++.|..|.. |..+.++ .
T Consensus 9 ~~~~~~~~c~c~~~~~g~--~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~ 73 (316)
T KOG1218|consen 9 KCLGGSGQCFCDPGYTGR--LQCEHQAVTS--ACSGICPC----------EVNSGECGLGYGFVGSVCRIECVCGNAG-G 73 (316)
T ss_pred ccCCCCCceecCCCcccc--ccccCCCCCc--cccccCCc----------cCCceeEecccccCCCccccccccCCCC-C
Confidence 456678999999999997 3333211111 11223333 45678999999999999886 4444433 2
Q ss_pred CC-ccCCCCCCCCCCCCCCCCccCCCCCccCCCCCcCCCCcccCCCCCCCCCCcCCCCCCCCCCCCccCCccccCCCCCc
Q psy2547 863 TC-QRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQD 941 (1807)
Q Consensus 863 ~C-~~C~C~~~~~~Cd~~tg~C~~C~~~~~G~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~~ 941 (1807)
.| ..+.|. +...++..++.|. .+++.|..|+. +|+|... ..+ .+|....
T Consensus 74 ~c~~~~~c~-~~~~~~~~~~~~~--~~~~~g~~C~~------------------~~~~~~~----c~~-~~C~~~~---- 123 (316)
T KOG1218|consen 74 GCSQPCRCK-NGGTCVSSTGYCH--LNGYEGPQCES------------------PCPCGDG----CAE-KTCANPR---- 123 (316)
T ss_pred cccCccccC-CCCcccCCCCccc--CCCCCcccccC------------------CCCcCCc----ccc-cccCCCc----
Confidence 23 334443 2335666666663 45566666642 3333322 001 2343221
Q ss_pred eeeecCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCCCcc
Q psy2547 942 VICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNAL 1021 (1807)
Q Consensus 942 ~~C~C~~g~~G~~Ce~C~~g~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~ 1021 (1807)
..|.|..+|.|..|.. ++++|.-|.. . |.+ ...++..+|.|. |.+|+.|.+|..=..+
T Consensus 124 ~~c~~~~~~~~~~C~~--~~~~g~~C~~--~---c~~--------~~~~~~~~~~c~-c~~g~~g~~~~~~~~~------ 181 (316)
T KOG1218|consen 124 RECRCGGGYIGEQCGE--ENLVGLKCQR--D---CQC--------TGGCDCKNGICT-CQPGFVGVFCVESCSG------ 181 (316)
T ss_pred cceecCCcCccccccc--cCCCCCCccC--C---CCC--------ccccCCCCCcee-ccCCcccccccccCCC------
Confidence 1588999999999987 6777766551 2 211 246778889995 8888888877531111
Q ss_pred cCCCC-CCcCCCCCCCCCCCCCcCCCCccccCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCCCCcc--CCCCc
Q psy2547 1022 EQNCT-ECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECN--EYTGQ 1098 (1807)
Q Consensus 1022 ~~~C~-~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~~~C~~c~C~~~gs~~~~~C~--~~tg~ 1098 (1807)
|. .+.|.+. ..|+..++.|.|.+.+.+ .|..||++.... ..+.|.... .+. -.++.
T Consensus 182 ---c~~~~~~~~g------~~C~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~c~~~~-----~~~~~~~~~~ 240 (316)
T KOG1218|consen 182 ---CSPLTACENG------AKCNRSTGSCLCYPGPSG----ACKGGFHGCACL---RMCDCNEGY-----PCVNDCGPGI 240 (316)
T ss_pred ---cCCCcccCCC------CeeeccccccccCCCCcc----cccCCccCCcCc---ccccccCCC-----cccCCcCCce
Confidence 22 2344433 379999999999999988 677777754322 345666533 332 25788
Q ss_pred cccCCCcccCCCCc-CCCCccCCCCCCCccCCCCCCCCCCCccccCCceEeccCCccccCCCc
Q psy2547 1099 CQCKSGFGGRQCDQ-CQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDT 1160 (1807)
Q Consensus 1099 C~C~~g~~G~~C~~-C~~g~~g~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~ 1160 (1807)
|.+..++.+..+.+ +..+++|.... ..|.|.. +..|+..++.|.|.+++.+..|..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~c~~----g~~~~~~~~~~~~~~~~~~~~~~~ 297 (316)
T KOG1218|consen 241 CGCVLGEGETVCLRERPKGSLGGSCF--QRCQCGG----GLVCRPGKGSCRCSPGAALATCQK 297 (316)
T ss_pred eEeCcccccccccccCccceecCccc--cceeeCC----CCccccccccccCCCccccccccc
Confidence 99999999899987 66677776322 3455554 346888899999999999888875
No 124
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.58 E-value=8.5e-08 Score=128.69 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESEL 1774 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~l 1774 (1807)
..|+.|..+.+.+..++
T Consensus 566 ~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 566 STLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555544
No 125
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.56 E-value=6.7e-08 Score=82.63 Aligned_cols=44 Identities=59% Similarity=1.257 Sum_probs=41.4
Q ss_pred cCCCCCCCCCCCcccCCCCcccCCCCcccCCCCCCCCCCcCCCC
Q psy2547 772 ECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGP 815 (1807)
Q Consensus 772 ~c~C~~~gs~~~~c~~~~g~C~C~~~~~G~~C~~C~~g~~~~~~ 815 (1807)
+|.|++.|+.+..|++.+|+|.|++||+|+.|++|.+|||+++.
T Consensus 1 ~C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 44 (50)
T cd00055 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44 (50)
T ss_pred CCcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCCC
Confidence 58999999988899999999999999999999999999999863
No 126
>KOG1029|consensus
Probab=98.54 E-value=0.00054 Score=85.10 Aligned_cols=32 Identities=13% Similarity=-0.008 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1736 RARGQMLLNKASQLSVNTTAKLKQLNETEAMF 1767 (1807)
Q Consensus 1736 ~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i 1767 (1807)
++++.+|..+.++-.++++-...++++|...+
T Consensus 548 kdqldelskE~esk~~eidi~n~qlkelk~~~ 579 (1118)
T KOG1029|consen 548 KDQLDELSKETESKLNEIDIFNNQLKELKEDV 579 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33333344444333333333333333333333
No 127
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.52 E-value=0.00058 Score=91.16 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy2547 1780 NIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1780 el~~L~~el~~l~~~I~~~ 1798 (1807)
.+..|++++..+.+.|..+
T Consensus 503 ~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 503 KLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3555666666666666544
No 128
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.51 E-value=0.00066 Score=82.60 Aligned_cols=14 Identities=7% Similarity=0.408 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHh
Q psy2547 1519 ASTSNITKQLDEFL 1532 (1807)
Q Consensus 1519 ~~~~~l~~~lk~~l 1532 (1807)
.+++.|.+.+-.|+
T Consensus 4 ~eL~~LNdRla~YI 17 (312)
T PF00038_consen 4 EELQSLNDRLASYI 17 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666566554
No 129
>KOG1219|consensus
Probab=98.50 E-value=1.3e-07 Score=125.24 Aligned_cols=120 Identities=28% Similarity=0.654 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCCCCCCCCCCCccCCccccCCCCCceeeecCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2547 907 RLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLAL 986 (1807)
Q Consensus 907 ~~~~~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~~~~C~C~~g~~G~~Ce~C~~g~~g~p~~~~~~C~~C~C~~~~~~~~ 986 (1807)
|....++|..-||.++ ++|...+. +.+.|.|++-|+|.+||.=....+-+||..||+|.|
T Consensus 3860 C~l~~d~C~~npCqhg--------G~C~~~~~-ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip----------- 3919 (4289)
T KOG1219|consen 3860 CSLLTDPCNDNPCQHG--------GTCISQPK-GGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIP----------- 3919 (4289)
T ss_pred ccccccccccCcccCC--------CEecCCCC-CceEEeCcccccCcccccccccccCCCCCCCCEEEe-----------
Q ss_pred CCCccCCCcccccCCCCCCCCCCCcccCCCCCCcccCC---CCCCcCCCCCCCCCCCCCcCCCC--ccccCCCccccccc
Q psy2547 987 PGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQN---CTECTCNILGIDHSKGPCDRTTG--QCPCLPNVIGVSCD 1061 (1807)
Q Consensus 987 ~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~~~~---C~~C~C~~~g~~~~~~~C~~~tG--~C~C~~g~~G~~C~ 1061 (1807)
...+..| +|.++|+|.+||. .+ |..-+|-++| .|..+-| .|.|.||+.|+.|.
T Consensus 3920 ----~~n~f~C-nC~~gyTG~~Ce~-----------~Gi~eCs~n~C~~gg------~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3920 ----FYNGFLC-NCPNGYTGKRCEA-----------RGISECSKNVCGTGG------QCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred ----cCCCeeE-eCCCCccCceeec-----------ccccccccccccCCc------eeeccCCceEeccChhHhcccCc
Q ss_pred ccCCCCc
Q psy2547 1062 RCLKNHW 1068 (1807)
Q Consensus 1062 ~C~~g~~ 1068 (1807)
.=+|+.+
T Consensus 3978 ~~~pni~ 3984 (4289)
T KOG1219|consen 3978 AEKPNIL 3984 (4289)
T ss_pred cccCccc
No 130
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.49 E-value=4.1e-08 Score=131.30 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=9.0
Q ss_pred cchhhhhHhHHHhHHHHHh
Q psy2547 1180 DNWDSILRGLADQTTKVIT 1198 (1807)
Q Consensus 1180 ~~~~~~~~~~~~~~~~l~~ 1198 (1807)
++|...+..|..-+..|..
T Consensus 63 ~nw~lr~~NLk~l~~~i~~ 81 (713)
T PF05622_consen 63 DNWRLRVSNLKKLLRNIKS 81 (713)
T ss_dssp G-SHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3565555555554444433
No 131
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=98.48 E-value=0.00034 Score=82.66 Aligned_cols=60 Identities=10% Similarity=0.170 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1472 INEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEF 1531 (1807)
Q Consensus 1472 l~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~ 1531 (1807)
+..+...++.+..++..+...+..+...+...+.+|..+...+......+++++.++..+
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l 113 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESL 113 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444455555555555555555555555555444433
No 132
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.48 E-value=0.00011 Score=88.60 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAELQKRIQSCI 1792 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~ 1792 (1807)
+.++.|+.++...+++++++...-..|.++|.+++
T Consensus 210 k~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 210 KTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333344444444444444333333333333333
No 133
>KOG1218|consensus
Probab=98.48 E-value=5.4e-06 Score=101.09 Aligned_cols=250 Identities=30% Similarity=0.669 Sum_probs=155.3
Q ss_pred cccCCCCcccCCCCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCccCCCCCccCCCCCc-CCCCcccCCCCCC
Q psy2547 832 ICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCER-CINGYYGDPRLGI 910 (1807)
Q Consensus 832 ~C~~~~g~C~C~~g~~G~~C~~C~~g~~~~~~C~~C~C~~~~~~Cd~~tg~C~~C~~~~~G~~Ce~-C~~G~~G~~~~~~ 910 (1807)
.+....++|.|.++|+|+ .++.......+.+..|.+ ...++.|. +..++.|..|.. |..+.++..+.
T Consensus 9 ~~~~~~~~c~c~~~~~g~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~c~~~~~~~~~~~~c~-- 76 (316)
T KOG1218|consen 9 KCLGGSGQCFCDPGYTGR--LQCEHQAVTSACSGICPC-------EVNSGECG-LGYGFVGSVCRIECVCGNAGGGCS-- 76 (316)
T ss_pred ccCCCCCceecCCCcccc--ccccCCCCCccccccCCc-------cCCceeEe-cccccCCCccccccccCCCCCccc--
Confidence 466778999999999997 444333334344555555 45678885 888888888762 33333332221
Q ss_pred CCCCcCCCCCCCCCCCCccCCccccCCCCCceeeec-CCCCcCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2547 911 DIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICEC-KEGYRGTRCDG-CLDNYFGNPQERGGSCEPCDCSNNTDLALPG 988 (1807)
Q Consensus 911 ~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~~~~C~C-~~g~~G~~Ce~-C~~g~~g~p~~~~~~C~~C~C~~~~~~~~~~ 988 (1807)
. ++.|..+ .++.. ....| ..+|.|..|+. |.-+.+ |.. .
T Consensus 77 -~---~~~c~~~--------~~~~~------~~~~~~~~~~~g~~C~~~~~~~~~---------c~~------------~ 117 (316)
T KOG1218|consen 77 -Q---PCRCKNG--------GTCVS------STGYCHLNGYEGPQCESPCPCGDG---------CAE------------K 117 (316)
T ss_pred -C---ccccCCC--------CcccC------CCCcccCCCCCcccccCCCCcCCc---------ccc------------c
Confidence 1 1223322 11111 11233 67777777773 222211 110 1
Q ss_pred CccCCCcccccCCCCCCCCCCCcccCCCCCCcccCCCCCCcCCCCCCCCCCCCCcCCCCccccCCCcccccccccCCCCc
Q psy2547 989 NCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHW 1068 (1807)
Q Consensus 989 ~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~ 1068 (1807)
.|......| .|..++.|.+|.. ++++|..+...| .+ . ..++..+|.|.|++||.|.+|..-
T Consensus 118 ~C~~~~~~c-~~~~~~~~~~C~~--~~~~g~~C~~~c---~~--~------~~~~~~~~~c~c~~g~~g~~~~~~----- 178 (316)
T KOG1218|consen 118 TCANPRREC-RCGGGYIGEQCGE--ENLVGLKCQRDC---QC--T------GGCDCKNGICTCQPGFVGVFCVES----- 178 (316)
T ss_pred ccCCCccce-ecCCcCccccccc--cCCCCCCccCCC---CC--c------cccCCCCCceeccCCccccccccc-----
Confidence 333333356 3888888888866 789998887777 11 1 357788999999999999999861
Q ss_pred ccCCCCCCC-CCCCCCCCCCCCCCccCCCCccccCCCcccCCCCcCCCCccCCCCCCCccCCCCCCCCCCCccccCCceE
Q psy2547 1069 KIASGTGCE-PCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTC 1147 (1807)
Q Consensus 1069 ~~~~~~~C~-~c~C~~~gs~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~~~C~~C~C~~~gs~~~~C~~~tG~C 1147 (1807)
...|. .+.|.+.+ .|+..++.|.+.+++.+ .|..+|+|.+.. ..|.|........ +-.+|.|
T Consensus 179 ----~~~c~~~~~~~~g~-----~C~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~c~~~~~~~~--~~~~~~~ 241 (316)
T KOG1218|consen 179 ----CSGCSPLTACENGA-----KCNRSTGSCLCYPGPSG----ACKGGFHGCACL--RMCDCNEGYPCVN--DCGPGIC 241 (316)
T ss_pred ----CCCcCCCcccCCCC-----eeeccccccccCCCCcc----cccCCccCCcCc--ccccccCCCcccC--CcCCcee
Confidence 11253 45666644 89999999999999988 777787776322 3456665432222 3368899
Q ss_pred eccCCccccCCCcC-CCCCccC
Q psy2547 1148 VCHQGIGGVRCDTC-ARGYIGT 1168 (1807)
Q Consensus 1148 ~C~~g~~G~~C~~C-~~g~~~~ 1168 (1807)
.+..++.+..+... ..++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~ 263 (316)
T KOG1218|consen 242 GCVLGEGETVCLRERPKGSLGG 263 (316)
T ss_pred EeCcccccccccccCccceecC
Confidence 99999888888864 4445443
No 134
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.47 E-value=0.00013 Score=95.71 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1733 GLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1733 ~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
+.+...+..++++...|+..+...-+--.+|=..|-+..++|+.++..|..-++||.++...|.+-
T Consensus 590 e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 590 EVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333345555555666666666666666666666666666543
No 135
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.46 E-value=0.0026 Score=87.02 Aligned_cols=15 Identities=0% Similarity=0.100 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhhh
Q psy2547 1786 KRIQSCINFIVDKSN 1800 (1807)
Q Consensus 1786 ~el~~l~~~I~~~~~ 1800 (1807)
..+....+.+..++.
T Consensus 496 ~~~~~~l~~~~~~vg 510 (1109)
T PRK10929 496 RHYHAFLERSSSRVG 510 (1109)
T ss_pred HHHHHHHHHHHHhcC
Confidence 444444444444443
No 136
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.45 E-value=5.7e-08 Score=82.86 Aligned_cols=43 Identities=53% Similarity=1.324 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCcccCCCCcccCCCCcccCCCCCCCCCCcCCCC
Q psy2547 773 CDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGP 815 (1807)
Q Consensus 773 c~C~~~gs~~~~c~~~~g~C~C~~~~~G~~C~~C~~g~~~~~~ 815 (1807)
|+|++.++.+..|++.+|+|.|++||+|++|++|++|||+++.
T Consensus 1 C~C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp ESSTTCCBCCSSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred CcCcCCCCCCCcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence 7899999999999999999999999999999999999999854
No 137
>PRK11281 hypothetical protein; Provisional
Probab=98.45 E-value=0.00025 Score=96.90 Aligned_cols=55 Identities=15% Similarity=0.049 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1672 LQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLL 1726 (1807)
Q Consensus 1672 l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~ 1726 (1807)
++.++..++.++...+..+.......+-.+.+.+.+..+++.++..++.+++.+.
T Consensus 197 l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in 251 (1113)
T PRK11281 197 LQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN 251 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333444444444444444444444444444443
No 138
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=0.043 Score=77.65 Aligned_cols=6 Identities=33% Similarity=1.210 Sum_probs=2.9
Q ss_pred CCCCCC
Q psy2547 1395 RGDPCD 1400 (1807)
Q Consensus 1395 ~~~~C~ 1400 (1807)
.+.||+
T Consensus 500 ~~~~cp 505 (1042)
T TIGR00618 500 QEEPCP 505 (1042)
T ss_pred CCCCCC
Confidence 345553
No 139
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.02 Score=73.50 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhhh
Q psy2547 1787 RIQSCINFIVDKS 1799 (1807)
Q Consensus 1787 el~~l~~~I~~~~ 1799 (1807)
+.+.++..|++++
T Consensus 819 ~~~slk~~l~e~a 831 (984)
T COG4717 819 RRESLKEDLEEKA 831 (984)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 140
>PRK11281 hypothetical protein; Provisional
Probab=98.41 E-value=0.0014 Score=89.80 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1425 NSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAY 1504 (1807)
Q Consensus 1425 ~~A~~~a~~l~~~i~e~~~~~eeL~~~~~~~~~~~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~ 1504 (1807)
+...+.++++++.+++..+++++..+++..++...............+..++..+.++..++.+.+..+.++...+-...
T Consensus 76 ~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~q 155 (1113)
T PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQ 155 (1113)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555555555555555544332211110000001111123444555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1505 DHAASVRNKTAAYVASTSNITKQL 1528 (1807)
Q Consensus 1505 ~~a~~~~~~~e~~~~~~~~l~~~l 1528 (1807)
.+-+.+.+.+.+...+++++-+.+
T Consensus 156 T~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 156 TQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444444444444433
No 141
>KOG0243|consensus
Probab=98.38 E-value=0.034 Score=73.96 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=6.7
Q ss_pred CceEEEEEEeec
Q psy2547 681 GKKYKVHLIFHQ 692 (1807)
Q Consensus 681 ~~~~~~~~~~~~ 692 (1807)
|..|.|+|.|-+
T Consensus 179 ~~EYsvKVSfLE 190 (1041)
T KOG0243|consen 179 GAEYSVKVSFLE 190 (1041)
T ss_pred CCeEEEEEEehh
Confidence 345666665544
No 142
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.36 E-value=0.0026 Score=82.44 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2547 1769 SQESELTELSKNIAELQKRIQ 1789 (1807)
Q Consensus 1769 ~~e~~le~le~el~~L~~el~ 1789 (1807)
.....|+.+..+...|+.+|.
T Consensus 290 ~~qe~Lea~~qqNqqL~~qls 310 (617)
T PF15070_consen 290 EAQEHLEALSQQNQQLQAQLS 310 (617)
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 334444444444444444443
No 143
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=98.36 E-value=0.061 Score=75.87 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=6.3
Q ss_pred cccccCCCCcceeEE
Q psy2547 115 SWWQSENGVENVTIQ 129 (1807)
Q Consensus 115 ~wwqs~~~~~~v~i~ 129 (1807)
+++|..-...|--||
T Consensus 81 ~~~~n~kd~~n~k~t 95 (2757)
T TIGR01612 81 TYFENQKDTANDKII 95 (2757)
T ss_pred hHHhcccccccCeeE
Confidence 444444444443333
No 144
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=98.36 E-value=0.0055 Score=76.10 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy2547 1590 AKANDLKRKA 1599 (1807)
Q Consensus 1590 ~~a~~L~~~a 1599 (1807)
..+..|...+
T Consensus 218 ~~S~~LR~~i 227 (384)
T PF03148_consen 218 QSSAQLREDI 227 (384)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.33 E-value=0.00057 Score=77.80 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1669 VKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKE 1703 (1807)
Q Consensus 1669 l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~ 1703 (1807)
+.+|-.|+..+...+..++..+...+.+-..++..
T Consensus 129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~k 163 (265)
T COG3883 129 FSDLISRVTAISVIVDADKKILEQQKEDKKSLEEK 163 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444444444444333333
No 146
>KOG4809|consensus
Probab=98.32 E-value=0.0039 Score=75.56 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1754 TAKLKQLNETEAMFNSQESELTELSKNIAELQKRI 1788 (1807)
Q Consensus 1754 ~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el 1788 (1807)
+.-.+++.+....+....+-+.+.+..|.+|..+-
T Consensus 524 ektkQel~~tkarl~stqqslaEke~HL~nLr~er 558 (654)
T KOG4809|consen 524 EKTKQELDATKARLASTQQSLAEKEAHLANLRIER 558 (654)
T ss_pred HHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555555554443
No 147
>PTZ00440 reticulocyte binding protein 2-like protein; Provisional
Probab=98.29 E-value=0.11 Score=75.69 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1502 EAYDHAASVRNKTAAYVASTSNITKQLD 1529 (1807)
Q Consensus 1502 ~~~~~a~~~~~~~e~~~~~~~~l~~~lk 1529 (1807)
+-...+......+...+.++..+++.+.
T Consensus 1305 ~~t~~~e~~~~~~k~El~Ks~~l~k~v~ 1332 (2722)
T PTZ00440 1305 NSTKKAEEFSNDAKKELEKTDNLIKQVE 1332 (2722)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334444444444444555555555554
No 148
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.28 E-value=0.032 Score=69.43 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHHH
Q psy2547 1439 NEKESKAEELRKHM 1452 (1807)
Q Consensus 1439 ~e~~~~~eeL~~~~ 1452 (1807)
..+...+.+|.+.+
T Consensus 516 ~~lr~~l~eLEqr~ 529 (1480)
T COG3096 516 QPLRMRLSELEQRL 529 (1480)
T ss_pred hHHHHHHHHHHHHH
Confidence 34555555555444
No 149
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.27 E-value=0.0086 Score=77.77 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2547 1475 KEAKAEEVFRGITTAKQE 1492 (1807)
Q Consensus 1475 ~~~~~~~l~~~~~~~~~~ 1492 (1807)
++.+..++..++...+.+
T Consensus 27 ~qqr~~qmseev~~L~eE 44 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEE 44 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 150
>KOG4809|consensus
Probab=98.23 E-value=0.034 Score=67.71 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHhh
Q psy2547 1561 IRERANEINNVIKSL 1575 (1807)
Q Consensus 1561 I~~l~~~i~~~~~~L 1575 (1807)
.++|+++|..+...+
T Consensus 340 ~kdLkEkv~~lq~~l 354 (654)
T KOG4809|consen 340 NKDLKEKVNALQAEL 354 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444443333333
No 151
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.23 E-value=0.019 Score=65.83 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1677 KSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQE 1720 (1807)
Q Consensus 1677 e~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~ 1720 (1807)
+.++.++.+++..-.=+++++++|..+++.-++.+-.+..++..
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d 260 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQD 260 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333333333333333444444444444434444444444433
No 152
>KOG1937|consensus
Probab=98.22 E-value=0.0077 Score=71.67 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1756 KLKQLNETEAMFN-----SQESELTELSKNIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1756 ~~~~l~~Le~~i~-----~~e~~le~le~el~~L~~el~~l~~~I~~ 1797 (1807)
..+++.+|+.+|. .....++.+..++.++.++.+.+..+|+.
T Consensus 474 ~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L~~~iR~ 520 (521)
T KOG1937|consen 474 LKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQLFSEIRL 520 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445554442 23344555666677777776666666653
No 153
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=98.21 E-value=0.047 Score=68.60 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1698 KNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTEL 1777 (1807)
Q Consensus 1698 e~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~l 1777 (1807)
..+-..+......+......+......++..+..+......+.+|..--..+...+...+.++..-..--+....-+..+
T Consensus 293 ~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~ 372 (412)
T PF04108_consen 293 SEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREA 372 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444444444444444444444444443332222223333333344
Q ss_pred HHHHHHHHH
Q psy2547 1778 SKNIAELQK 1786 (1807)
Q Consensus 1778 e~el~~L~~ 1786 (1807)
.++|..+..
T Consensus 373 ~eeL~~l~e 381 (412)
T PF04108_consen 373 NEELDKLRE 381 (412)
T ss_pred HHHHHHHHH
Confidence 444444443
No 154
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=98.21 E-value=0.063 Score=69.81 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1767 FNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1767 i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
|...++.|.....+|..-+..+..++..|..|
T Consensus 1394 i~~K~~~l~~fk~~Lnndk~di~qLi~~La~K 1425 (1439)
T PF12252_consen 1394 IAMKQQSLARFKTDLNNDKYDIDQLISKLAKK 1425 (1439)
T ss_pred HHHHHHHHHHHHHhhccCcccHHHHHHHHHhC
Confidence 33444445555555555455555555555544
No 155
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.19 E-value=0.00054 Score=77.33 Aligned_cols=14 Identities=0% Similarity=0.052 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy2547 1699 NLEKEVALAQKQAS 1712 (1807)
Q Consensus 1699 ~a~~~a~~ae~~l~ 1712 (1807)
.++.+...++.++.
T Consensus 100 ~ak~r~~~le~el~ 113 (239)
T COG1579 100 IAKERINSLEDELA 113 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 156
>PTZ00440 reticulocyte binding protein 2-like protein; Provisional
Probab=98.18 E-value=0.17 Score=73.78 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1277 ARLALNDLTEEIKKLNKTGEMLKE 1300 (1807)
Q Consensus 1277 ~~~~le~L~~el~~l~~~~~~l~~ 1300 (1807)
-..+.+.+..++.+|+..++.|..
T Consensus 989 k~~~w~~ik~~i~~lN~ny~~l~~ 1012 (2722)
T PTZ00440 989 EKDEWEHFKSEIDKLNVNYNILNK 1012 (2722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554433
No 157
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.067 Score=68.98 Aligned_cols=22 Identities=9% Similarity=0.321 Sum_probs=10.0
Q ss_pred ccCCchhHHHHHHHHHHHHHhh
Q psy2547 1233 TTRSSHDLTVMLTTIDDMKKQI 1254 (1807)
Q Consensus 1233 ~~~~~~~~~~l~~~l~~l~~~l 1254 (1807)
++.....+.++..+|.+++.++
T Consensus 176 P~GrnP~iNq~l~klkq~~~ei 197 (984)
T COG4717 176 PSGRNPQINQLLEKLKQERNEI 197 (984)
T ss_pred CCCCChhHHHHHHHHHHHHHHH
Confidence 3333334445555554444444
No 158
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.18 E-value=0.00049 Score=88.62 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1750 SVNTTAKLKQLNETEAMFNSQE 1771 (1807)
Q Consensus 1750 ~~~~~~~~~~l~~Le~~i~~~e 1771 (1807)
..++.+.+.+.+.|.++|+.+.
T Consensus 504 k~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 504 KEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 159
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=98.16 E-value=0.089 Score=69.71 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2547 1776 ELSKNIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1776 ~le~el~~L~~el~~l~~~I 1795 (1807)
....++++=++.|..+-.+|
T Consensus 737 aAA~KLAECQeTI~sLGkQL 756 (769)
T PF05911_consen 737 AAAEKLAECQETIASLGKQL 756 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 160
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.15 E-value=0.0023 Score=82.54 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy2547 1780 NIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1780 el~~L~~el~~l~~~I~~~ 1798 (1807)
+.-.+..+++++.+.|...
T Consensus 572 ~tG~~~rEirdLe~qI~~e 590 (594)
T PF05667_consen 572 ETGTISREIRDLEEQIDTE 590 (594)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3334445555555555443
No 161
>KOG0980|consensus
Probab=98.15 E-value=0.075 Score=68.52 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy2547 1215 EFELLEKKIEDVKAL 1229 (1807)
Q Consensus 1215 ~~~~le~~l~~lq~l 1229 (1807)
.+..++..+..++..
T Consensus 359 ~~~q~~~ql~~le~~ 373 (980)
T KOG0980|consen 359 RIEQYENQLLALEGE 373 (980)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 162
>KOG1219|consensus
Probab=98.15 E-value=1.8e-06 Score=115.18 Aligned_cols=102 Identities=29% Similarity=0.763 Sum_probs=0.0
Q ss_pred CCCCCCcCCCCCCCCCCCCCcCCCC-ccccCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCC--cc
Q psy2547 1023 QNCTECTCNILGIDHSKGPCDRTTG-QCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTG--QC 1099 (1807)
Q Consensus 1023 ~~C~~C~C~~~g~~~~~~~C~~~tG-~C~C~~g~~G~~C~~C~~g~~~~~~~~~C~~c~C~~~gs~~~~~C~~~tg--~C 1099 (1807)
..|..-+|.++|+ +.=.+..| +|.|++-|.|.+|+. ....|.+.+|..+| +|.+..+ -|
T Consensus 3865 d~C~~npCqhgG~----C~~~~~ggy~CkCpsqysG~~CEi---------~~epC~snPC~~Gg-----tCip~~n~f~C 3926 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGT----CISQPKGGYKCKCPSQYSGNHCEI---------DLEPCASNPCLTGG-----TCIPFYNGFLC 3926 (4289)
T ss_pred cccccCcccCCCE----ecCCCCCceEEeCcccccCccccc---------ccccccCCCCCCCC-----EEEecCCCeeE
Q ss_pred ccCCCcccCCCCc-----CCCCccCCCCCCCccCCCCCCCCCCCccccCCc--eEeccCCccccCC
Q psy2547 1100 QCKSGFGGRQCDQ-----CQTNFWGNPNVECFPCDCDPSGSATSQCHQNNG--TCVCHQGIGGVRC 1158 (1807)
Q Consensus 1100 ~C~~g~~G~~C~~-----C~~g~~g~~~~~C~~C~C~~~gs~~~~C~~~tG--~C~C~~g~~G~~C 1158 (1807)
.|+.||+|.+|+. |..+ .|...| +|-..-| .|.|.||+.|+.|
T Consensus 3927 nC~~gyTG~~Ce~~Gi~eCs~n------------~C~~gg----~C~n~~gsf~CncT~g~~gr~c 3976 (4289)
T KOG1219|consen 3927 NCPNGYTGKRCEARGISECSKN------------VCGTGG----QCINIPGSFHCNCTPGILGRTC 3976 (4289)
T ss_pred eCCCCccCceeecccccccccc------------cccCCc----eeeccCCceEeccChhHhcccC
No 163
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.15 E-value=0.0021 Score=73.27 Aligned_cols=38 Identities=16% Similarity=-0.024 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1724 KLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLN 1761 (1807)
Q Consensus 1724 ~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~ 1761 (1807)
.|+..+..+++....+..+..+.+.....++.+..+++
T Consensus 159 ~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~ 196 (265)
T COG3883 159 SLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKN 196 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343444444444444444444444444444443333
No 164
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.12 E-value=0.004 Score=67.05 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1759 QLNETEAMFNSQESELTELSKNIAELQKRI 1788 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~le~el~~L~~el 1788 (1807)
.+.+|..-++....-.+++..++..|+.+|
T Consensus 159 ~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 159 QIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444334444444444444444
No 165
>KOG1226|consensus
Probab=98.11 E-value=9.6e-06 Score=101.87 Aligned_cols=133 Identities=31% Similarity=0.857 Sum_probs=74.6
Q ss_pred CcccCCCCcccCCCCCCCCCCcCCC--CCCCcC----CCCCCCCCCCCcccCCCCcccCCCCcc----CCCCCCCCCCCC
Q psy2547 790 GNCVCKPNVVGRRCDRCAPGTYGFG--PEGCKA----CDCNHVGALDNICDVVSGQCKCRAQTY----GRECDQCSPGYW 859 (1807)
Q Consensus 790 g~C~C~~~~~G~~C~~C~~g~~~~~--~~~C~~----C~C~~~g~~~~~C~~~~g~C~C~~g~~----G~~C~~C~~g~~ 859 (1807)
|+|.|.+||.|..|+ |..+-++-. -..|+. -.|++.| .| .=|+|.|.+... |..|+-
T Consensus 478 G~C~C~~G~~G~~CE-C~~~~~ss~~~~~~Cr~~~~~~vCSgrG----~C--~CGqC~C~~~~~~~i~G~fCEC------ 544 (783)
T KOG1226|consen 478 GQCRCDEGWLGKKCE-CSTDELSSSEEEDKCRENSDSPVCSGRG----DC--VCGQCVCHKPDNGKIYGKFCEC------ 544 (783)
T ss_pred cceecCCCCCCCccc-CCccccCcHhHHhhccCCCCCCCcCCCC----cE--eCCceEecCCCCCceeeeeeec------
Confidence 899999999999998 222222110 012321 1455555 23 348899988766 777652
Q ss_pred CCCCCccC---CCCCCCCCCCCCCCCccCCCCCccCCCCCcCCCCcccCCCCCCCCCCcCCCCCCCCCCCCccCCccccC
Q psy2547 860 NYPTCQRC---ICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLD 936 (1807)
Q Consensus 860 ~~~~C~~C---~C~~~~~~Cd~~tg~C~~C~~~~~G~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~~~~~~~~~C~~~ 936 (1807)
..-.|..= -|.||+. |. -|.|. |..||+|..| .|+ .+.+.|..-. +.+-||. ++|.+
T Consensus 545 DnfsC~r~~g~lC~g~G~-C~--CG~Cv-C~~GwtG~~C-~C~---------~std~C~~~~--G~iCSGr---G~C~C- 604 (783)
T KOG1226|consen 545 DNFSCERHKGVLCGGHGR-CE--CGRCV-CNPGWTGSAC-NCP---------LSTDTCESSD--GQICSGR---GTCEC- 604 (783)
T ss_pred cCcccccccCcccCCCCe-Ee--CCcEE-cCCCCccCCC-CCC---------CCCccccCCC--CceeCCC---ceeeC-
Confidence 11112111 1445442 42 47886 9999999999 354 1223443211 1111121 45543
Q ss_pred CCCCceeeecCCC-CcCCCCCCCCC
Q psy2547 937 PRSQDVICECKEG-YRGTRCDGCLD 960 (1807)
Q Consensus 937 ~~~~~~~C~C~~g-~~G~~Ce~C~~ 960 (1807)
++|.|-.. |.|..||.|..
T Consensus 605 -----g~C~C~~~~~sG~~CE~cpt 624 (783)
T KOG1226|consen 605 -----GRCKCTDPPYSGEFCEKCPT 624 (783)
T ss_pred -----CceEcCCCCcCcchhhcCCC
Confidence 56788766 99999998743
No 166
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=98.09 E-value=0.021 Score=71.03 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1759 QLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
++..|...+..+.++|.+.+..+..|......+..+|..|
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K 364 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVK 364 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433
No 167
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=98.07 E-value=0.0065 Score=70.83 Aligned_cols=57 Identities=7% Similarity=0.020 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1694 ENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKL 1757 (1807)
Q Consensus 1694 ~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~ 1757 (1807)
..++..|..++..+.+++..-.+.+..... ++..+..++..++.+++.+..+.++..
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQE-------EIt~LlsqivdlQ~r~k~~~~EnEeL~ 261 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQE-------EITSLLSQIVDLQQRCKQLAAENEELQ 261 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444444444444333333333333 333334444444444444433333333
No 168
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=98.07 E-value=0.04 Score=66.16 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2547 1708 QKQASGLRSRYQETDN 1723 (1807)
Q Consensus 1708 e~~l~el~~~l~~~~~ 1723 (1807)
+.++.-..++|++.+.
T Consensus 215 r~QL~~Y~~Kf~efq~ 230 (309)
T PF09728_consen 215 REQLNLYSEKFEEFQD 230 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 169
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=0.088 Score=66.05 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1423 ESNSAKDYAETSKKLINEKESKAEELRKHMIIL-SESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQE 1492 (1807)
Q Consensus 1423 ~a~~A~~~a~~l~~~i~e~~~~~eeL~~~~~~~-~~~~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~ 1492 (1807)
.|++.+...+......+++..++|.|...-... ...-.+.+.-+.+..++..+.+....+...+..+...
T Consensus 385 ~A~~~L~~~~~~~~~~dE~~AA~E~L~~~~~~~~~~~~~A~d~~~a~~~El~SL~k~~SNI~~~~l~vR~~ 455 (1104)
T COG4913 385 SAEELLELNNAARLTVDEYPAAREALESAGQRNVEDRTRAVDEFKAADQELSSLSKGSSNIEYRLLQVREN 455 (1104)
T ss_pred cHHHHHHHHHHHHHhHhhhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 346666666665566677777777775443211 1112222333344455555554444444444444443
No 170
>KOG1226|consensus
Probab=98.05 E-value=1.2e-05 Score=101.18 Aligned_cols=133 Identities=32% Similarity=0.922 Sum_probs=74.2
Q ss_pred ceeeecCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCccCCCcccccCCCCCC----CCCCCcc
Q psy2547 941 DVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPC----DCSNNTDLALPGNCDTLTGKCLQCRYDTE----GDHCQVC 1012 (1807)
Q Consensus 941 ~~~C~C~~g~~G~~Ce~C~~g~~g~p~~~~~~C~~C----~C~~~~~~~~~~~C~~~tG~C~~C~~~~~----G~~C~~C 1012 (1807)
-++|.|.+||.|.+|| |..+-+..+.. ...|+.= .|+|. |.|. =|+|+ |..... |..|| |
T Consensus 477 CG~C~C~~G~~G~~CE-C~~~~~ss~~~-~~~Cr~~~~~~vCSgr------G~C~--CGqC~-C~~~~~~~i~G~fCE-C 544 (783)
T KOG1226|consen 477 CGQCRCDEGWLGKKCE-CSTDELSSSEE-EDKCRENSDSPVCSGR------GDCV--CGQCV-CHKPDNGKIYGKFCE-C 544 (783)
T ss_pred ecceecCCCCCCCccc-CCccccCcHhH-HhhccCCCCCCCcCCC------CcEe--CCceE-ecCCCCCceeeeeee-c
Confidence 3678999999999998 44444433211 1334321 34443 4443 47775 776666 66663 1
Q ss_pred cCCCCCCcccCCCCCC---cCCCCCCCCCCCCCcCCCCccccCCCcccccccccCCCCcccCCCCCCCCC---CCCCCCC
Q psy2547 1013 KAGFFGNALEQNCTEC---TCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPC---DCDPIGS 1086 (1807)
Q Consensus 1013 ~~G~~G~~~~~~C~~C---~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~~~C~~c---~C~~~gs 1086 (1807)
.. ..|..- -|... +.| .-|+|+|.+||+|..|+ |+ .+...|..- -|+..|
T Consensus 545 Dn--------fsC~r~~g~lC~g~------G~C--~CG~CvC~~GwtG~~C~-C~------~std~C~~~~G~iCSGrG- 600 (783)
T KOG1226|consen 545 DN--------FSCERHKGVLCGGH------GRC--ECGRCVCNPGWTGSACN-CP------LSTDTCESSDGQICSGRG- 600 (783)
T ss_pred cC--------cccccccCcccCCC------CeE--eCCcEEcCCCCccCCCC-CC------CCCccccCCCCceeCCCc-
Confidence 00 011110 12222 234 24899999999999996 33 122334321 233333
Q ss_pred CCCCCccCCCCccccCCC-cccCCCCcCCC
Q psy2547 1087 VDVTECNEYTGQCQCKSG-FGGRQCDQCQT 1115 (1807)
Q Consensus 1087 ~~~~~C~~~tg~C~C~~g-~~G~~C~~C~~ 1115 (1807)
.|. =|.|.|-.. |.|..|+.|..
T Consensus 601 ----~C~--Cg~C~C~~~~~sG~~CE~cpt 624 (783)
T KOG1226|consen 601 ----TCE--CGRCKCTDPPYSGEFCEKCPT 624 (783)
T ss_pred ----eee--CCceEcCCCCcCcchhhcCCC
Confidence 444 467788755 99999998764
No 171
>KOG2685|consensus
Probab=98.04 E-value=0.018 Score=68.70 Aligned_cols=51 Identities=12% Similarity=0.302 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1620 LTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVK 1670 (1807)
Q Consensus 1620 L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~ 1670 (1807)
+.+.+.+.+.++..+.+..++|.+++..|..++..+...+.-|..+..+++
T Consensus 280 i~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle 330 (421)
T KOG2685|consen 280 IRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLE 330 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHH
Confidence 334444444455455555555555555555555555554444444444443
No 172
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=98.04 E-value=0.0024 Score=70.95 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2547 1639 DDISAARKDLSQITNDLD 1656 (1807)
Q Consensus 1639 ~~i~~~~~~l~~ie~~l~ 1656 (1807)
++++.++.++...+....
T Consensus 68 eEvr~Lr~~LR~~q~~~r 85 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQER 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 173
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.02 E-value=0.0012 Score=86.50 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1759 QLNETEAMFNSQESELTELSKNIAEL 1784 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~le~el~~L 1784 (1807)
.+++|+++++++.+++.++..+|.+.
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 174
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=98.01 E-value=0.038 Score=65.19 Aligned_cols=11 Identities=0% Similarity=0.072 Sum_probs=3.9
Q ss_pred HHHHHHHHHHh
Q psy2547 1787 RIQSCINFIVD 1797 (1807)
Q Consensus 1787 el~~l~~~I~~ 1797 (1807)
++...-..|..
T Consensus 246 ~l~~~~~~l~~ 256 (262)
T smart00283 246 ELSGLAEELKE 256 (262)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 175
>KOG1217|consensus
Probab=98.00 E-value=0.00013 Score=94.16 Aligned_cols=222 Identities=29% Similarity=0.718 Sum_probs=112.7
Q ss_pred CCcccCCCCccCCCCCC---CCCCCCCCCCCccCCCCCCCCCCCCCCCCccCCCCCccCCCCCcCCCCcccCCCCCCCCC
Q psy2547 837 SGQCKCRAQTYGRECDQ---CSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIP 913 (1807)
Q Consensus 837 ~g~C~C~~g~~G~~C~~---C~~g~~~~~~C~~C~C~~~~~~Cd~~tg~C~~C~~~~~G~~Ce~C~~G~~G~~~~~~~~~ 913 (1807)
...|.|++||.|..|+. |...-. .+-. .+.|....+ ......| .|..||.|.+.....+.
T Consensus 109 ~~~c~c~~g~~~~~~~~~~~C~~~~~--------~~~~-~~~c~~~~~-------~~~~~~c-~C~~g~~~~~~~~~~~~ 171 (487)
T KOG1217|consen 109 SYECTCPPGYQGTPCEGECECVTGPG--------VCCI-DGSCSNGPG-------SVGPFRC-SCTEGYEGEPCETDLDE 171 (487)
T ss_pred CceeeCCCccccCcCCcceeecCCCC--------CeeC-chhhcCCCC-------CCCceee-eeCCCcccccccccccc
Confidence 34688999999998886 433311 0000 111221110 1122334 46666666655432234
Q ss_pred Cc--CCCCCCCCCCCCccCCccccCCCCCceeeecCCCCcCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCC
Q psy2547 914 CR--PCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCE---PCDCSNNTDLALPG 988 (1807)
Q Consensus 914 C~--~c~C~~~~~~~~~~~~~C~~~~~~~~~~C~C~~g~~G~~Ce~C~~g~~g~p~~~~~~C~---~C~C~~~~~~~~~~ 988 (1807)
|. +.+|.++ .+|..... .+.|.|++||.|..|+.-.. ++.|. .|.|...... .
T Consensus 172 C~~~~~~c~~~--------~~C~~~~~--~~~C~c~~~~~~~~~~~~~~---------~~~c~~~~~~~~~~g~~~---~ 229 (487)
T KOG1217|consen 172 CIQYSSPCQNG--------GTCVNTGG--SYLCSCPPGYTGSTCETTGN---------GGTCVDSVACSCPPGARG---P 229 (487)
T ss_pred cccCCCCcCCC--------cccccCCC--CeeEeCCCCccCCcCcCCCC---------CceEecceeccCCCCCCC---C
Confidence 54 3335443 45654332 48899999999999985300 11111 1222211100 0
Q ss_pred CccCCCccc----ccCCCCCCCCCCCcccCCCCCCcc-----cCCCCCCc-CCCCCCCCCCCCCcCCC--CccccCCCcc
Q psy2547 989 NCDTLTGKC----LQCRYDTEGDHCQVCKAGFFGNAL-----EQNCTECT-CNILGIDHSKGPCDRTT--GQCPCLPNVI 1056 (1807)
Q Consensus 989 ~C~~~tG~C----~~C~~~~~G~~C~~C~~G~~G~~~-----~~~C~~C~-C~~~g~~~~~~~C~~~t--G~C~C~~g~~ 1056 (1807)
.|......| ..|.....+..| .|++||-+... ...|..=. |.+.+ .|.... ..|.|++||.
T Consensus 230 ~c~~~~~~~~~~~~~c~~~~~~~~C-~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~------~C~~~~~~~~C~C~~g~~ 302 (487)
T KOG1217|consen 230 ECEVSIVECASGDGTCVNTVGSYTC-RCPEGYTGDACVTCVDVDSCALIASCPNGG------TCVNVPGSYRCTCPPGFT 302 (487)
T ss_pred CcccccccccCCCCcccccCCceee-eCCCCccccccceeeeccccCCCCccCCCC------eeecCCCcceeeCCCCCC
Confidence 111000000 124444555666 56778777762 25565532 55543 466554 5899999999
Q ss_pred cccccccCCCCcccCCCCCC----CCCCCCCCCCCCCCCccC----CCCccccCCCcccCCCC----cCCCC
Q psy2547 1057 GVSCDRCLKNHWKIASGTGC----EPCDCDPIGSVDVTECNE----YTGQCQCKSGFGGRQCD----QCQTN 1116 (1807)
Q Consensus 1057 G~~C~~C~~g~~~~~~~~~C----~~c~C~~~gs~~~~~C~~----~tg~C~C~~g~~G~~C~----~C~~g 1116 (1807)
|..|..|.. ...| ..-.|...+ .|+. ....|.|.+||.|..|+ .|...
T Consensus 303 g~~~~~~~~-------~~~C~~~~~~~~c~~g~-----~C~~~~~~~~~~C~c~~~~~g~~C~~~~~~C~~~ 362 (487)
T KOG1217|consen 303 GRLCTECVD-------VDECSPRNAGGPCANGG-----TCNTLGSFGGFRCACGPGFTGRRCEDSNDECASS 362 (487)
T ss_pred CCCCccccc-------cccccccccCCcCCCCc-----ccccCCCCCCCCcCCCCCCCCCccccCCccccCC
Confidence 999821211 1122 122244433 4421 12359999999999996 55554
No 176
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.00 E-value=0.0089 Score=64.44 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I 1795 (1807)
..+.+-...++.+...++++..-...|..++..+++.+
T Consensus 151 a~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 151 AILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555556666665555554
No 177
>KOG0993|consensus
Probab=97.97 E-value=0.079 Score=62.30 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy2547 1279 LALNDLTEEIKKLN 1292 (1807)
Q Consensus 1279 ~~le~L~~el~~l~ 1292 (1807)
++|..|+.+|-++.
T Consensus 38 ~dl~~lrtql~~a~ 51 (542)
T KOG0993|consen 38 DDLGHLRTQLWEAQ 51 (542)
T ss_pred chHHHHHHHHHHHH
Confidence 34444444444433
No 178
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.97 E-value=0.0016 Score=76.57 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1639 DDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRY 1718 (1807)
Q Consensus 1639 ~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l 1718 (1807)
..+.+.+.+...++.+++.+..++.++...+.-++..+...+....... ....-.+.+.+..+++.++.+.++++..+
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~--~~~~~~ere~lV~qLEk~~~q~~qLe~d~ 149 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG--ARHFPHEREDLVEQLEKLREQIEQLERDL 149 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc--ccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555544444432222111 00111344555555566666666666666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1719 QETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1719 ~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
..+.+..++...+-...+.++..|..++..+....+.++-.|.+|-.+-.-+.++|..++.+..-+...+..+...+..+
T Consensus 150 qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 150 QSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66665555555555555555555555555444443334455788888888888889989998888888888888888743
No 179
>PRK09039 hypothetical protein; Validated
Probab=97.95 E-value=0.00063 Score=82.78 Aligned_cols=6 Identities=0% Similarity=0.241 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy2547 1620 LTEART 1625 (1807)
Q Consensus 1620 L~~a~~ 1625 (1807)
+...++
T Consensus 48 i~~~~~ 53 (343)
T PRK09039 48 ISGKDS 53 (343)
T ss_pred HhhHHH
Confidence 333333
No 180
>KOG1937|consensus
Probab=97.95 E-value=0.094 Score=62.84 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1764 EAMFNSQESELTELSKNIAELQKRIQ 1789 (1807)
Q Consensus 1764 e~~i~~~e~~le~le~el~~L~~el~ 1789 (1807)
-.+++++.+.++++..+.++|..+|+
T Consensus 494 l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 494 LKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666664
No 181
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.93 E-value=0.023 Score=63.52 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1648 LSQITNDLDDAQQKSNETNVKVKLLQERLKSIQ 1680 (1807)
Q Consensus 1648 l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk 1680 (1807)
+..+..+.+.+...|+.++....++-.+.+.++
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K 103 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQK 103 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333344444444444444444433333333
No 182
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=97.93 E-value=0.15 Score=64.10 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy2547 1605 GADSTKNTVQKIVDVLTEART 1625 (1807)
Q Consensus 1605 ea~~l~~~l~~l~~~L~~a~~ 1625 (1807)
++.++..-+.+++..+...+.
T Consensus 249 Da~El~~V~~el~~~~~~~~~ 269 (412)
T PF04108_consen 249 DAQELPDVVKELQERLDEMEN 269 (412)
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 333343334444444433333
No 183
>PRK09039 hypothetical protein; Validated
Probab=97.91 E-value=0.0016 Score=79.40 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1609 TKNTVQKIVDVLTEARTAQDMAE 1631 (1807)
Q Consensus 1609 l~~~l~~l~~~L~~a~~~~~~a~ 1631 (1807)
++..+.+++.++..++.....++
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le 101 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQ 101 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333
No 184
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=97.88 E-value=0.00032 Score=87.18 Aligned_cols=102 Identities=34% Similarity=0.851 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCC---CCccCCCCCCCCCCCCCCCCccCCCCCccCCCCCcCCCCcccCCCCCCCCCCcCCCCCCCCCCCC
Q psy2547 851 CDQCSPGYWNYP---TCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGL 927 (1807)
Q Consensus 851 C~~C~~g~~~~~---~C~~C~C~~~~~~Cd~~tg~C~~C~~~~~G~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~~~~ 927 (1807)
|+.|.+||+-.. .|..-. .|. +..|..|... .+..|..|.++||..+...-..+|..|+ ..
T Consensus 1 C~~C~~gy~~~~~~t~C~~~~------~C~--~~~C~~Cs~~-~~~~Ct~C~~~~~lt~t~~Ci~~C~~c~--~~----- 64 (397)
T PF03302_consen 1 CTECTSGYKLSTDKTSCVSAS------ECK--TPNCKTCSND-KKEVCTECNSGYYLTPTNQCIEDCAKCS--NY----- 64 (397)
T ss_pred CccccCCceECCCCCcccccC------CCC--CCCCccccCC-CCCccCcCCCCCcCCCCCccccCccccc--cc-----
Confidence 677888886521 232211 111 2234445432 2267889999999888554344444332 21
Q ss_pred ccCCccccCCCCCceee-ecCCCC-c---C-CCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2547 928 SYADTCQLDPRSQDVIC-ECKEGY-R---G-TRCDGCLDNYFGNPQERGGSCEPCD 977 (1807)
Q Consensus 928 ~~~~~C~~~~~~~~~~C-~C~~g~-~---G-~~Ce~C~~g~~g~p~~~~~~C~~C~ 977 (1807)
+..++.. ....| .|..+. . | ..|..|.+|||-+ +..|.||.
T Consensus 65 -~~~t~~~----~~~~C~~C~~~~~~~~~~~~~c~~C~~G~y~~----~~~C~~C~ 111 (397)
T PF03302_consen 65 -YCSTCGN----DKKTCKKCSIGNCLTCSGDACCSECPDGYYKN----GNKCVPCH 111 (397)
T ss_pred -ccccccc----ccccccccccccccccccCccccCCCCCcccc----CCCCCCCC
Confidence 1112211 12345 555432 1 2 3588999999954 35688775
No 185
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.88 E-value=0.0076 Score=70.27 Aligned_cols=87 Identities=13% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1639 DDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRY 1718 (1807)
Q Consensus 1639 ~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l 1718 (1807)
+++..++.+|..+..++.............|..|..+|-+++.++.+.....+++...+..++..-..+..++.+++++|
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443344444444444444444444444444444
Q ss_pred HHHHHHH
Q psy2547 1719 QETDNKL 1725 (1807)
Q Consensus 1719 ~~~~~~l 1725 (1807)
.+....+
T Consensus 286 ~E~~~mL 292 (306)
T PF04849_consen 286 AECMAML 292 (306)
T ss_pred HHHHHHH
Confidence 4444333
No 186
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.86 E-value=0.027 Score=62.88 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1641 ISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQ 1680 (1807)
Q Consensus 1641 i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk 1680 (1807)
+..+....+++...+..++....++..+...++.-++.++
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k 110 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYK 110 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444333
No 187
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=97.83 E-value=0.00095 Score=88.94 Aligned_cols=65 Identities=25% Similarity=0.662 Sum_probs=39.1
Q ss_pred cCCCCcCCCCccCCCCCCCccCCCCCCCCCCCcccc-CCceE-eccCCccc--------cCC---CcCCCCCccCCCCCC
Q psy2547 1107 GRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQ-NNGTC-VCHQGIGG--------VRC---DTCARGYIGTAPDCS 1173 (1807)
Q Consensus 1107 G~~C~~C~~g~~g~~~~~C~~C~C~~~gs~~~~C~~-~tG~C-~C~~g~~G--------~~C---~~C~~g~~~~~~~C~ 1173 (1807)
...|..|.+|||-.+...|.+|+ +.- .+|.. ...+| .|..|+.= ..| ..|..|||-+...|.
T Consensus 558 ~g~Ct~C~~GYyl~~~~~C~~Cd--~~C---~~C~~~~~~~C~sC~~g~yL~~~~~~~~g~Cv~~~~C~~GYY~d~~~C~ 632 (800)
T PTZ00214 558 NGKCTTTKKGYGISPDGKLLECD--PTC---LACTAPGPGRCTRCPSDKLLKRASGAATGSCVDPGACVDGYYADGDACL 632 (800)
T ss_pred CCcccccccCcccCCCCcccccc--chh---hhccCCCCCcceECCCCCEeccccccccccccCcccCCCCcccCCCccc
Confidence 35688888898876665677664 211 13331 23456 57766631 124 478888887766677
Q ss_pred CCC
Q psy2547 1174 PCG 1176 (1807)
Q Consensus 1174 ~C~ 1176 (1807)
+|+
T Consensus 633 ~C~ 635 (800)
T PTZ00214 633 PCA 635 (800)
T ss_pred cCC
Confidence 775
No 188
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=97.83 E-value=0.028 Score=64.24 Aligned_cols=35 Identities=9% Similarity=0.168 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1764 EAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1764 e~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
...+..+++++..........-..|+.|-++|.++
T Consensus 190 k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~ 224 (239)
T PF05276_consen 190 KEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQ 224 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344433333334444444444444433
No 189
>PRK10869 recombination and repair protein; Provisional
Probab=97.83 E-value=0.013 Score=76.27 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1760 LNETEAMFNSQESELTELSKNIA 1782 (1807)
Q Consensus 1760 l~~Le~~i~~~e~~le~le~el~ 1782 (1807)
+++|+.+++++.+++.++..+|.
T Consensus 343 l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 343 LETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444334433333333
No 190
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.82 E-value=0.16 Score=61.03 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1732 SGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELT 1775 (1807)
Q Consensus 1732 l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le 1775 (1807)
+.....-+.....+++.+.+.+....++...+....+.....|-
T Consensus 232 L~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~ 275 (309)
T PF09728_consen 232 LNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALI 275 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333333333344444333333333333333333333333333
No 191
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=97.82 E-value=0.27 Score=64.39 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhh
Q psy2547 1368 KALQRLNEKITSLE 1381 (1807)
Q Consensus 1368 ~~L~~L~~kL~~l~ 1381 (1807)
.+|..+.+++..++
T Consensus 1103 ~LI~~iTKrIt~LE 1116 (1439)
T PF12252_consen 1103 TLITDITKRITDLE 1116 (1439)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444555544443
No 192
>PF13166 AAA_13: AAA domain
Probab=97.79 E-value=0.063 Score=73.29 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy2547 1243 MLTTIDDMKK 1252 (1807)
Q Consensus 1243 l~~~l~~l~~ 1252 (1807)
++..++.++.
T Consensus 94 ~~~~I~~l~~ 103 (712)
T PF13166_consen 94 IEKEIEELKE 103 (712)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 193
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.79 E-value=0.0026 Score=86.94 Aligned_cols=27 Identities=0% Similarity=0.022 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1764 EAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1764 e~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
+.++..++++.+..++-.+.+.+++++
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 194
>KOG4260|consensus
Probab=97.78 E-value=3.3e-05 Score=85.09 Aligned_cols=158 Identities=27% Similarity=0.631 Sum_probs=87.3
Q ss_pred ecCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCCCcc---
Q psy2547 945 ECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNAL--- 1021 (1807)
Q Consensus 945 ~C~~g~~G~~Ce~C~~g~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~--- 1021 (1807)
-||+|+.|+.|..|+-|- =+| |+||+.....|+ -..+|.| +|..||+|..|..|-++||-...
T Consensus 131 CCp~gtyGpdCl~Cpggs----------er~--C~GnG~C~GdGs-R~GsGkC-kC~~GY~Gp~C~~Cg~eyfes~Rne~ 196 (350)
T KOG4260|consen 131 CCPDGTYGPDCLQCPGGS----------ERP--CFGNGSCHGDGS-REGSGKC-KCETGYTGPLCRYCGIEYFESSRNEQ 196 (350)
T ss_pred ccCCCCcCCccccCCCCC----------cCC--cCCCCcccCCCC-CCCCCcc-cccCCCCCccccccchHHHHhhcccc
Confidence 389999999999985432 233 555521111111 1246889 69999999999999999995422
Q ss_pred cCCCCCCcCCCCCCCCCCCCCcCCCCccccCCCcccccccccCCCCcccC----CCCCC--CCCCCCCCCCCCCCCccCC
Q psy2547 1022 EQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIA----SGTGC--EPCDCDPIGSVDVTECNEY 1095 (1807)
Q Consensus 1022 ~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~----~~~~C--~~c~C~~~gs~~~~~C~~~ 1095 (1807)
.-.|..|.=.=. +.|. |-.-+.|.+|+.|+--.. ....| ++-+|.+. . .|...
T Consensus 197 ~lvCt~Ch~~C~------~~Cs----------g~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~----q-fCvNt 255 (350)
T KOG4260|consen 197 HLVCTACHEGCL------GVCS----------GESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAH----Q-FCVNT 255 (350)
T ss_pred cchhhhhhhhhh------cccC----------CCCCCChhhhcccceecccccccHHHHhcCCCCCChh----h-eeecC
Confidence 244554420000 0121 112245666766653221 11233 23334332 1 57665
Q ss_pred CC--ccccCCCccc--CCCCcCCCCccCCCCCCCccCCCCCCCCCCCccccCCc--eEeccCCc
Q psy2547 1096 TG--QCQCKSGFGG--RQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNG--TCVCHQGI 1153 (1807)
Q Consensus 1096 tg--~C~C~~g~~G--~~C~~C~~g~~g~~~~~C~~C~C~~~gs~~~~C~~~tG--~C~C~~g~ 1153 (1807)
.| .|.+++||.+ ..|..|++++-+ ....|....| .|+|..|+
T Consensus 256 eGSf~C~dk~Gy~~g~d~C~~~~d~~~~----------------kn~~c~ni~~~~r~v~f~~~ 303 (350)
T KOG4260|consen 256 EGSFKCEDKEGYKKGVDECQFCADVCAS----------------KNRPCMNIDGQYRCVCFSGL 303 (350)
T ss_pred CCceEecccccccCChHHhhhhhhhccc----------------CCCCcccCCccEEEEecccc
Confidence 55 5888888865 245555555433 2345555544 57877665
No 195
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=97.77 E-value=0.37 Score=63.76 Aligned_cols=25 Identities=4% Similarity=0.093 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Q psy2547 1778 SKNIAELQKRIQSCINFIVDKSNNY 1802 (1807)
Q Consensus 1778 e~el~~L~~el~~l~~~I~~~~~~Y 1802 (1807)
..++.....++...-..|...+..|
T Consensus 489 ~~~~~~~a~~l~~~a~~L~~~v~~f 513 (553)
T PRK15048 489 VQESAAAAAALEEQASRLTQAVSAF 513 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444455544443
No 196
>PF13166 AAA_13: AAA domain
Probab=97.76 E-value=0.13 Score=70.16 Aligned_cols=6 Identities=17% Similarity=0.468 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy2547 1775 TELSKN 1780 (1807)
Q Consensus 1775 e~le~e 1780 (1807)
..++.+
T Consensus 441 ~~~~~~ 446 (712)
T PF13166_consen 441 KKIEKE 446 (712)
T ss_pred HHHHHH
Confidence 333333
No 197
>PHA03247 large tegument protein UL36; Provisional
Probab=97.75 E-value=0.7 Score=66.37 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2547 1693 VENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLN 1744 (1807)
Q Consensus 1693 a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~ 1744 (1807)
++.++++++.+++.++..-++.=..|......+....+.+..+++++..|+.
T Consensus 1709 lR~~ld~Lrr~le~AEaaWDeaW~~F~r~~~~~~~S~e~~~~A~~~a~aLQa 1760 (3151)
T PHA03247 1709 TRRRTEALRRSLEAAEAEWDEVWGRFGRVRGGAWKSPEALRAAREQLRALQT 1760 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333333444555555555543
No 198
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.75 E-value=0.016 Score=64.48 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1648 LSQITNDLDDAQQKSNETNVKVKLLQERLKSIQ 1680 (1807)
Q Consensus 1648 l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk 1680 (1807)
|....+++..+..++..+..+..+++.++.+..
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433333333
No 199
>PLN03188 kinesin-12 family protein; Provisional
Probab=97.75 E-value=0.12 Score=69.83 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1651 ITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFL 1684 (1807)
Q Consensus 1651 ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~ 1684 (1807)
+-+.+.+++.+.+++..+=..+.+-|+++++-..
T Consensus 1112 ~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaa 1145 (1320)
T PLN03188 1112 MLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAA 1145 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554443
No 200
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=97.74 E-value=0.11 Score=63.62 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1608 STKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAA 1644 (1807)
Q Consensus 1608 ~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~ 1644 (1807)
.+..++.+.+..|+.|...-..+.+.+......|+.+
T Consensus 128 ~l~~~~~kyr~~L~~A~~sD~~v~~k~~~~~~~l~lL 164 (339)
T cd09235 128 PLRAEGSKYRTILDNAVQADKIVREKYESHREGIELL 164 (339)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665555555555555544444
No 201
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.73 E-value=0.0081 Score=78.15 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1763 TEAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1763 Le~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
.+.++..++++++..++....+.+++++
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 202
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.73 E-value=0.0039 Score=85.26 Aligned_cols=29 Identities=7% Similarity=-0.005 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1757 LKQLNETEAMFNSQESELTELSKNIAELQ 1785 (1807)
Q Consensus 1757 ~~~l~~Le~~i~~~e~~le~le~el~~L~ 1785 (1807)
..++..|+++.+..++.++.+..+++++.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444443
No 203
>KOG1388|consensus
Probab=97.72 E-value=1.8e-05 Score=85.59 Aligned_cols=116 Identities=28% Similarity=0.637 Sum_probs=84.9
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCCCcccCCCCCCcCCCCCCCCCCCCCcCCCCccc
Q psy2547 971 GSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCP 1050 (1807)
Q Consensus 971 ~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~ 1050 (1807)
-.|..|+|||+++.+. +-.|-.|..+++|.+|++|..||||+.-...|++|.|+... ..|+..+|+|.
T Consensus 47 l~cP~~~cNGh~~c~t-------~~v~~~~~N~~~g~~c~kc~~g~~GdtN~g~c~~~~~~g~~-----~~~~~~~~~c~ 114 (217)
T KOG1388|consen 47 LFCPLCQCNGHSDCNT-------QHVCWRCENGTTGAHCEKCIVGFYGDTNGGKCQPCDCNGGA-----SACVTLTGKCF 114 (217)
T ss_pred hcChHHHhcCCCCccc-------ceeeeeccCccccccCCceEEEEEecCCCCccCHhhhcCCe-----eeeeccCCccc
Confidence 3577899998755333 33455699999999999999999999666889999998765 37999999999
Q ss_pred c-CCCcccccccccC-CCCcccCCCCCCCCCCCCCCCCCCCCCccCCCCcc---ccCCCcccCCCCcCCCCccCC
Q psy2547 1051 C-LPNVIGVSCDRCL-KNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQC---QCKSGFGGRQCDQCQTNFWGN 1120 (1807)
Q Consensus 1051 C-~~g~~G~~C~~C~-~g~~~~~~~~~C~~c~C~~~gs~~~~~C~~~tg~C---~C~~g~~G~~C~~C~~g~~g~ 1120 (1807)
| ..+|.|..|++|. ++.|. .++ ..|.| .+..+-.+..+..+.++|+..
T Consensus 115 c~~kgvvgd~c~~~e~~N~~r---------------------~~~-~kgtcyy~l~id~~ftf~l~~~d~~fv~s 167 (217)
T KOG1388|consen 115 CTTKGVVGDLCPKCEVPNRYR---------------------GKP-LKGTCYYELLIDGQFTFHLLQEDDGFVTS 167 (217)
T ss_pred cccceEecccCcccccccccc---------------------cCc-cccceeeeeecccccccceeecCCCceee
Confidence 9 7899999999843 33331 111 12224 344566667777888887764
No 204
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.71 E-value=0.028 Score=71.07 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1760 LNETEAMFNSQESELTELSKNIAEL 1784 (1807)
Q Consensus 1760 l~~Le~~i~~~e~~le~le~el~~L 1784 (1807)
++.|+++++.+.+++.+...+|...
T Consensus 344 ~~~Le~~~~~l~~~~~~~A~~Ls~~ 368 (557)
T COG0497 344 LEALEKEVKKLKAELLEAAEALSAI 368 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 205
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.71 E-value=0.032 Score=67.95 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q psy2547 1779 KNIAELQKRIQSCI 1792 (1807)
Q Consensus 1779 ~el~~L~~el~~l~ 1792 (1807)
.+|..|+++++.+.
T Consensus 276 ~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 276 SEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555544443
No 206
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=97.68 E-value=0.85 Score=65.24 Aligned_cols=26 Identities=4% Similarity=0.105 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1506 HAASVRNKTAAYVASTSNITKQLDEF 1531 (1807)
Q Consensus 1506 ~a~~~~~~~e~~~~~~~~l~~~lk~~ 1531 (1807)
.+......+...+.++..+++.++.-
T Consensus 1373 e~e~~~k~~k~El~Kse~lik~v~~~ 1398 (2757)
T TIGR01612 1373 EIEENNKNIKDELDKSEKLIKKIKDD 1398 (2757)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444455555556666655533
No 207
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=97.67 E-value=0.5 Score=62.36 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy2547 1777 LSKNIAELQKRIQSCINFIVDKSNNY 1802 (1807)
Q Consensus 1777 le~el~~L~~el~~l~~~I~~~~~~Y 1802 (1807)
...++.....++..+-..|++.+.+|
T Consensus 490 ~~~~~~~~~~~l~~~a~~L~~~v~~F 515 (554)
T PRK15041 490 LVEESAAAAAALEEQASRLTEAVAVF 515 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555555555444
No 208
>KOG2685|consensus
Probab=97.67 E-value=0.24 Score=59.62 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
.++.+|...+..++.+|.+.++.+..|..-...+..+|.-+
T Consensus 351 ~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k 391 (421)
T KOG2685|consen 351 DEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIK 391 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555555555555555555444444444433
No 209
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.66 E-value=0.23 Score=58.14 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2547 1643 AARKDLSQITNDLDDAQQKS 1662 (1807)
Q Consensus 1643 ~~~~~l~~ie~~l~~~e~~l 1662 (1807)
.+.++|.++..+...++..|
T Consensus 110 ~L~rkl~qLr~EK~~lE~~L 129 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQL 129 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 210
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=97.64 E-value=0.022 Score=72.26 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2547 1737 ARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKS 1799 (1807)
Q Consensus 1737 ~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~ 1799 (1807)
.++.+...+++.+.-+++...++-..|.-.+....+++..|.+=...|+.-|..++.+|....
T Consensus 501 ~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ 563 (861)
T PF15254_consen 501 IEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDS 563 (861)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 333344444444444444444454555555555555555555555566666666666555443
No 211
>KOG1388|consensus
Probab=97.63 E-value=3.1e-05 Score=83.82 Aligned_cols=123 Identities=34% Similarity=0.748 Sum_probs=89.0
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCccCCCCCccCCCCCcCCCCcccCCCCCCCCCCcCCCCCCCCCCCCccCCccccCC
Q psy2547 858 YWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDP 937 (1807)
Q Consensus 858 ~~~~~~C~~C~C~~~~~~Cd~~tg~C~~C~~~~~G~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~~~~~~~~~C~~~~ 937 (1807)
.|.|-.|..|.||||++-+ .+-.|..|..++.|.+|++|..||||+ ..+ ..|+||.|.++. ..|...
T Consensus 43 ~W~fl~cP~~~cNGh~~c~--t~~v~~~~~N~~~g~~c~kc~~g~~Gd-tN~--g~c~~~~~~g~~-------~~~~~~- 109 (217)
T KOG1388|consen 43 IWRFLFCPLCQCNGHSDCN--TQHVCWRCENGTTGAHCEKCIVGFYGD-TNG--GKCQPCDCNGGA-------SACVTL- 109 (217)
T ss_pred hhhhhcChHHHhcCCCCcc--cceeeeeccCccccccCCceEEEEEec-CCC--CccCHhhhcCCe-------eeeecc-
Confidence 4666678899999887433 234577799999999999999999998 433 579999999873 344432
Q ss_pred CCCceeeec-CCCCcCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccC
Q psy2547 938 RSQDVICEC-KEGYRGTRCDGCLDN--YFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKA 1014 (1807)
Q Consensus 938 ~~~~~~C~C-~~g~~G~~Ce~C~~g--~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~ 1014 (1807)
.+.|.| -.|+.|..|++|..- |-|+|.. ++ |- +.-+..+..++++..+.+
T Consensus 110 ---~~~c~c~~kgvvgd~c~~~e~~N~~r~~~~k--gt-----------------cy-----y~l~id~~ftf~l~~~d~ 162 (217)
T KOG1388|consen 110 ---TGKCFCTTKGVVGDLCPKCEVPNRYRGKPLK--GT-----------------CY-----YELLIDGQFTFHLLQEDD 162 (217)
T ss_pred ---CCccccccceEecccCcccccccccccCccc--cc-----------------ee-----eeeecccccccceeecCC
Confidence 357888 568999999986432 5566644 11 11 124678888889999999
Q ss_pred CCCCCc
Q psy2547 1015 GFFGNA 1020 (1807)
Q Consensus 1015 G~~G~~ 1020 (1807)
||+...
T Consensus 163 ~fv~sd 168 (217)
T KOG1388|consen 163 GFVTSD 168 (217)
T ss_pred Cceeec
Confidence 998743
No 212
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=97.63 E-value=0.26 Score=57.95 Aligned_cols=22 Identities=9% Similarity=0.339 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1468 SKKLINEKEAKAEEVFRGITTA 1489 (1807)
Q Consensus 1468 a~~~l~~~~~~~~~l~~~~~~~ 1489 (1807)
+...++.++..+..|..+....
T Consensus 56 te~~lq~~e~ra~~L~~q~~~L 77 (442)
T PF06637_consen 56 TESRLQATEQRADRLYSQVVGL 77 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666665555443
No 213
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.60 E-value=0.048 Score=65.33 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy2547 1710 QASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLS 1750 (1807)
Q Consensus 1710 ~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~ 1750 (1807)
+++.++++++.+...+..+...+++.+.++.++..++++..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333344443333333
No 214
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.60 E-value=0.029 Score=64.28 Aligned_cols=7 Identities=57% Similarity=0.710 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy2547 1619 VLTEART 1625 (1807)
Q Consensus 1619 ~L~~a~~ 1625 (1807)
.|.+++.
T Consensus 39 ~l~~ar~ 45 (219)
T TIGR02977 39 TLVEVRT 45 (219)
T ss_pred HHHHHHH
Confidence 3333333
No 215
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.59 E-value=0.099 Score=67.78 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1756 KLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1756 ~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
...+|..|-..+-..+..|+.+..+-..|.-+++++...|.
T Consensus 390 lE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 390 LESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 33444455555555566666666666666666777776666
No 216
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.59 E-value=0.011 Score=76.92 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAE 1783 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~ 1783 (1807)
.++..|+++++..++.++.+.+++++
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 217
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=97.59 E-value=0.16 Score=58.24 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1749 LSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1749 l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
+...++....++..|+.++......+......|+.+..+|-.
T Consensus 182 ~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 182 FNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555554554444444455444443
No 218
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=97.58 E-value=0.094 Score=69.29 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1776 ELSKNIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1776 ~le~el~~L~~el~~l~~~I~~ 1797 (1807)
++..+-.+|+..++.+++++..
T Consensus 349 ~L~~rW~~L~~~~d~~L~~~~~ 370 (683)
T PF08580_consen 349 DLAQRWLELKEDMDSLLEDSQS 370 (683)
T ss_pred HHHHHHHHHHHHHHHhhhhccc
Confidence 4444444555555555554443
No 219
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=97.58 E-value=0.19 Score=60.79 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1607 DSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARK 1646 (1807)
Q Consensus 1607 ~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~ 1646 (1807)
..+..++.+++..|..|...-..+.+.+......|.-+..
T Consensus 80 ~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~ 119 (296)
T PF13949_consen 80 ASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSG 119 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcC
Confidence 4566777777777777777666666666666666554443
No 220
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.57 E-value=0.011 Score=77.77 Aligned_cols=18 Identities=11% Similarity=0.243 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2547 1759 QLNETEAMFNSQESELTE 1776 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~ 1776 (1807)
+++.+++++.+.-.+|..
T Consensus 354 el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 354 EVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 221
>PRK10698 phage shock protein PspA; Provisional
Probab=97.57 E-value=0.032 Score=63.83 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1763 TEAMFNSQESELTELSKNIAELQKRI 1788 (1807)
Q Consensus 1763 Le~~i~~~e~~le~le~el~~L~~el 1788 (1807)
|..++..++.. ...+++|..|++++
T Consensus 193 l~~e~~~le~~-~~ve~ELa~LK~~~ 217 (222)
T PRK10698 193 LDQQFAELKAD-DEISEQLAALKAKM 217 (222)
T ss_pred HHHHHHHhhcc-chHHHHHHHHHHHh
Confidence 44444444321 23555555555544
No 222
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.56 E-value=0.31 Score=57.12 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2547 1664 ETNVKVKLLQERLKSIQAGF 1683 (1807)
Q Consensus 1664 ~~e~~l~~l~~~le~lk~~l 1683 (1807)
.+-++++.|..+-..++.++
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 223
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.56 E-value=0.077 Score=59.74 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHh
Q psy2547 1592 ANDLKRKANLTKA 1604 (1807)
Q Consensus 1592 a~~L~~~a~~a~~ 1604 (1807)
++.|+.++..++.
T Consensus 29 IksLKeei~emkk 41 (201)
T PF13851_consen 29 IKSLKEEIAEMKK 41 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3334333333333
No 224
>KOG1217|consensus
Probab=97.56 E-value=0.0019 Score=83.54 Aligned_cols=130 Identities=28% Similarity=0.672 Sum_probs=77.1
Q ss_pred CcccCCCCcccCCCCCCCCCCcCCCCCCCc--CCCCCCCCCCCCcccCCCC--cccCCCCccCCCCCCC-----------
Q psy2547 790 GNCVCKPNVVGRRCDRCAPGTYGFGPEGCK--ACDCNHVGALDNICDVVSG--QCKCRAQTYGRECDQC----------- 854 (1807)
Q Consensus 790 g~C~C~~~~~G~~C~~C~~g~~~~~~~~C~--~C~C~~~g~~~~~C~~~~g--~C~C~~g~~G~~C~~C----------- 854 (1807)
-.|.|..+|.|..|.... ..|. .-.|.+.+ .|....+ .|.|+++|.|..|..-
T Consensus 152 ~~c~C~~g~~~~~~~~~~--------~~C~~~~~~c~~~~----~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~ 219 (487)
T KOG1217|consen 152 FRCSCTEGYEGEPCETDL--------DECIQYSSPCQNGG----TCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVA 219 (487)
T ss_pred eeeeeCCCcccccccccc--------cccccCCCCcCCCc----ccccCCCCeeEeCCCCccCCcCcCCCCCceEeccee
Confidence 468999999999887421 0111 11133332 4555444 5999999999998753
Q ss_pred ---CCCCCCCCCCccCCCCCCCCCCCCCCCCc----cCCCCCccCCCCCcCCCCcccCCC--CCCCCCCcCCC-CCCCCC
Q psy2547 855 ---SPGYWNYPTCQRCICNGHADLCDSKTGTC----ISCRNSTDGENCERCINGYYGDPR--LGIDIPCRPCP-CPGTVE 924 (1807)
Q Consensus 855 ---~~g~~~~~~C~~C~C~~~~~~Cd~~tg~C----~~C~~~~~G~~Ce~C~~G~~G~~~--~~~~~~C~~c~-C~~~~~ 924 (1807)
.+|+.+. .|......| ..|.....+..| +|++||-+... ....+.|..-. |+++
T Consensus 220 ~~~~~g~~~~-------------~c~~~~~~~~~~~~~c~~~~~~~~C-~~~~g~~~~~~~~~~~~~~C~~~~~c~~~-- 283 (487)
T KOG1217|consen 220 CSCPPGARGP-------------ECEVSIVECASGDGTCVNTVGSYTC-RCPEGYTGDACVTCVDVDSCALIASCPNG-- 283 (487)
T ss_pred ccCCCCCCCC-------------CcccccccccCCCCcccccCCceee-eCCCCccccccceeeeccccCCCCccCCC--
Confidence 3333321 121111111 234555556777 67888888862 11235566543 5543
Q ss_pred CCCccCCccccCCCCCceeeecCCCCcCCCC
Q psy2547 925 SGLSYADTCQLDPRSQDVICECKEGYRGTRC 955 (1807)
Q Consensus 925 ~~~~~~~~C~~~~~~~~~~C~C~~g~~G~~C 955 (1807)
++|...+. .+.|.|++||+|..|
T Consensus 284 ------~~C~~~~~--~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 284 ------GTCVNVPG--SYRCTCPPGFTGRLC 306 (487)
T ss_pred ------CeeecCCC--cceeeCCCCCCCCCC
Confidence 67765543 388999999999998
No 225
>PRK10698 phage shock protein PspA; Provisional
Probab=97.53 E-value=0.037 Score=63.31 Aligned_cols=9 Identities=44% Similarity=0.427 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy2547 1592 ANDLKRKAN 1600 (1807)
Q Consensus 1592 a~~L~~~a~ 1600 (1807)
++.+..+++
T Consensus 15 in~~ldkaE 23 (222)
T PRK10698 15 INALLEKAE 23 (222)
T ss_pred HHHHHHhhc
Confidence 334444443
No 226
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.53 E-value=0.09 Score=63.28 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2547 1672 LQERLKSIQAGFLQNG 1687 (1807)
Q Consensus 1672 l~~~le~lk~~l~~~~ 1687 (1807)
|+-+++.++..+..++
T Consensus 416 LqlelkK~k~nyv~LQ 431 (527)
T PF15066_consen 416 LQLELKKIKANYVHLQ 431 (527)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 3333333333333333
No 227
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=97.53 E-value=0.29 Score=60.04 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1608 STKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAA 1644 (1807)
Q Consensus 1608 ~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~ 1644 (1807)
.+..++.+.+..|++|...-..+...+.+.+..+..+
T Consensus 131 ~l~~~i~~~r~~L~~A~~sD~~v~~k~~~~~~~l~~L 167 (339)
T cd09238 131 NLWERLNRFRVNLEQAGDSDESLRRRIEDAMDGMLIL 167 (339)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 5666677777777777766666666666665555555
No 228
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=97.53 E-value=0.16 Score=62.60 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1607 DSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAA 1644 (1807)
Q Consensus 1607 ~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~ 1644 (1807)
..+..++.+.+..|++|...-..+...+......|+.+
T Consensus 130 ~~l~~~~~~~~~~L~~A~~sD~~v~~k~~~~~~~l~lL 167 (353)
T cd09236 130 PKLYTQAAEYEGYLKQAGASDELVRRKLDEWEDLIQIL 167 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34556667777777766666666666666655555544
No 229
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.50 E-value=0.015 Score=74.07 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy2547 1777 LSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1777 le~el~~L~~el~~l 1791 (1807)
+..++..++.+++.+
T Consensus 251 ~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 251 AQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 230
>KOG1850|consensus
Probab=97.49 E-value=0.33 Score=55.77 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1759 QLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~ 1797 (1807)
.++.+..+|+.++.-..++..+-+.|.+.++.+...+..
T Consensus 293 ~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 293 EYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 333344444444444444444444444444444444433
No 231
>KOG4302|consensus
Probab=97.49 E-value=0.73 Score=59.75 Aligned_cols=43 Identities=7% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChH
Q psy2547 1498 ILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLA 1540 (1807)
Q Consensus 1498 ~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~ 1540 (1807)
.+.++.+.++..+.++....+.++.+++.+|..+-+.+..++.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4455556666666666666666666676666655554444433
No 232
>KOG2129|consensus
Probab=97.49 E-value=0.13 Score=60.67 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1701 EKEVALAQKQASGLRSRYQETDN 1723 (1807)
Q Consensus 1701 ~~~a~~ae~~l~el~~~l~~~~~ 1723 (1807)
+.-++.++.+++.++..+..+++
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 233
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.49 E-value=0.0047 Score=81.81 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1766 MFNSQESELTELSKNIAELQKRIQSCINF 1794 (1807)
Q Consensus 1766 ~i~~~e~~le~le~el~~L~~el~~l~~~ 1794 (1807)
+.+...+.|.+...+|.++.+++.++.+.
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555555555555443
No 234
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=97.48 E-value=0.023 Score=66.20 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1587 GDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVA---IQT--AKDDISAARKDLSQITNDLDDAQQK 1661 (1807)
Q Consensus 1587 ~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~---l~~--a~~~i~~~~~~l~~ie~~l~~~e~~ 1661 (1807)
..+..+-.++.+++..+.++.++++.++..-..+..++..+...+.. ... ....+.+++.+|..+...+..++..
T Consensus 21 ~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~ 100 (240)
T PF12795_consen 21 QDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQ 100 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544444444444443322 000 0112334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1662 SNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEE 1697 (1807)
Q Consensus 1662 l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~a 1697 (1807)
+.....++..+..+.+.+...+.+++..+.++...+
T Consensus 101 l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 101 LQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433
No 235
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=97.47 E-value=0.49 Score=57.26 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1651 ITNDLDDAQQKSNETNVKVKLLQERLKSIQAGF 1683 (1807)
Q Consensus 1651 ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l 1683 (1807)
+-..+.+++.+.+++..+=..+..-|+++++-.
T Consensus 342 ~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaA 374 (488)
T PF06548_consen 342 MLEQYADLQEKHNDLLARHRRIMEGIEDVKKAA 374 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555444555555554433
No 236
>PRK10869 recombination and repair protein; Provisional
Probab=97.44 E-value=0.046 Score=71.33 Aligned_cols=18 Identities=6% Similarity=0.012 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELT 1775 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le 1775 (1807)
++++.+.+++.+.-++|.
T Consensus 348 ~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 348 LAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 237
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=97.43 E-value=0.03 Score=65.31 Aligned_cols=98 Identities=10% Similarity=0.186 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1586 AGDLAKANDLKRKANLTKAGADSTKNTVQKIVDV---LT--EARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQ 1660 (1807)
Q Consensus 1586 ~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~---L~--~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~ 1660 (1807)
+....+++.+.+.+..+=.++..++.+++.++.. .. -....+..++..|......+...+..+..++..+..+..
T Consensus 34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~ 113 (240)
T PF12795_consen 34 KKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQT 113 (240)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444455555555555555555555554333 00 001122333334444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1661 KSNETNVKVKLLQERLKSIQAGF 1683 (1807)
Q Consensus 1661 ~l~~~e~~l~~l~~~le~lk~~l 1683 (1807)
..+.+...+.++..++.++...+
T Consensus 114 ~p~~aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 114 RPERAQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 238
>KOG0982|consensus
Probab=97.43 E-value=0.38 Score=57.47 Aligned_cols=6 Identities=50% Similarity=1.348 Sum_probs=2.3
Q ss_pred ccccCC
Q psy2547 1153 IGGVRC 1158 (1807)
Q Consensus 1153 ~~G~~C 1158 (1807)
|.|..|
T Consensus 57 ~g~~Q~ 62 (502)
T KOG0982|consen 57 FGGDQC 62 (502)
T ss_pred hcchhh
Confidence 333333
No 239
>KOG0249|consensus
Probab=97.43 E-value=0.013 Score=73.10 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1736 RARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELS 1778 (1807)
Q Consensus 1736 ~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le 1778 (1807)
.++++.|..+.+.+++.++.....-+.|...++.+..+++++.
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 240
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=97.43 E-value=0.32 Score=55.96 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1763 TEAMFNSQESELTELSKNIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1763 Le~~i~~~e~~le~le~el~~L~~el~~l~~~I 1795 (1807)
+.+.+......+++++.+|..|+++++.+....
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444433
No 241
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.43 E-value=0.11 Score=62.49 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy2547 1584 ETAGDLAKAND 1594 (1807)
Q Consensus 1584 ~~~~~l~~a~~ 1594 (1807)
+++..+...+.
T Consensus 74 EL~~~I~egr~ 84 (312)
T smart00787 74 ELKKYISEGRD 84 (312)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 242
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.42 E-value=0.006 Score=80.85 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1765 AMFNSQESELTELSKNIAELQKR 1787 (1807)
Q Consensus 1765 ~~i~~~e~~le~le~el~~L~~e 1787 (1807)
+.+.+.-++|+++..+|+.+++.
T Consensus 692 ~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 692 EILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444443
No 243
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=97.42 E-value=0.032 Score=71.55 Aligned_cols=27 Identities=4% Similarity=0.110 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1764 EAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1764 e~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
+.++..++++++..+.....+.+++++
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e 367 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQRYTQ 367 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 244
>KOG4438|consensus
Probab=97.42 E-value=0.55 Score=56.62 Aligned_cols=7 Identities=43% Similarity=0.842 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy2547 1525 TKQLDEF 1531 (1807)
Q Consensus 1525 ~~~lk~~ 1531 (1807)
.+++..+
T Consensus 158 ~~ele~~ 164 (446)
T KOG4438|consen 158 LKELERF 164 (446)
T ss_pred HHHHHhh
Confidence 3334444
No 245
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.42 E-value=0.15 Score=57.55 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1604 AGADSTKNTVQKIVDVLTEARTAQDMA 1630 (1807)
Q Consensus 1604 ~ea~~l~~~l~~l~~~L~~a~~~~~~a 1630 (1807)
..+.++..+...+.+-|..++.....+
T Consensus 48 k~m~ei~~eN~~L~epL~~a~~e~~eL 74 (201)
T PF13851_consen 48 KLMAEISQENKRLSEPLKKAEEEVEEL 74 (201)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333334444443333333333
No 246
>KOG2008|consensus
Probab=97.42 E-value=0.3 Score=55.73 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy2547 1788 IQSCINFIV 1796 (1807)
Q Consensus 1788 l~~l~~~I~ 1796 (1807)
|+.+-++|.
T Consensus 220 LE~ISd~IH 228 (426)
T KOG2008|consen 220 LEMISDEIH 228 (426)
T ss_pred HHHHHHHHH
Confidence 333333333
No 247
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=97.41 E-value=0.43 Score=56.20 Aligned_cols=44 Identities=7% Similarity=0.087 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1657 DAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNL 1700 (1807)
Q Consensus 1657 ~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a 1700 (1807)
.+......+...+.....+++..+..+......+..+...++.+
T Consensus 109 ~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~ 152 (251)
T cd07653 109 KHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKA 152 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444445555544444444444444333
No 248
>KOG4572|consensus
Probab=97.41 E-value=0.81 Score=58.21 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy2547 1363 QEENEKALQRLNEKITSL 1380 (1807)
Q Consensus 1363 ~~e~~~~L~~L~~kL~~l 1380 (1807)
..++...|+.+..++.++
T Consensus 963 haE~daeLe~~~ael~el 980 (1424)
T KOG4572|consen 963 HAEIDAELEKEFAELIEL 980 (1424)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 249
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.40 E-value=0.022 Score=72.49 Aligned_cols=25 Identities=20% Similarity=0.427 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1765 AMFNSQESELTELSKNIAELQKRIQ 1789 (1807)
Q Consensus 1765 ~~i~~~e~~le~le~el~~L~~el~ 1789 (1807)
.++...+.++.+++.++..++.+++
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555554443
No 250
>KOG2991|consensus
Probab=97.40 E-value=0.22 Score=55.36 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1759 QLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
+.+.....|--++++|++.+.+|..|++.++.+...+-.+
T Consensus 272 dVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~ 311 (330)
T KOG2991|consen 272 DVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDK 311 (330)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333444445555556666666666666666555555443
No 251
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=97.39 E-value=0.23 Score=60.90 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1607 DSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAA 1644 (1807)
Q Consensus 1607 ~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~ 1644 (1807)
..+..++.+++..|.+|...-..+.+.+......|+.+
T Consensus 127 ~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL 164 (337)
T cd09234 127 TELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLL 164 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44666666666777666665555555555554444444
No 252
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.39 E-value=0.55 Score=60.97 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1741 MLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIA 1782 (1807)
Q Consensus 1741 ~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~ 1782 (1807)
++..++..+.+.+-.|...|+.+..+-..+.-+++.++..+.
T Consensus 389 elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 389 ELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 444555555555556666666666555555555555555444
No 253
>KOG2129|consensus
Probab=97.39 E-value=0.11 Score=61.20 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1667 VKVKLLQERLKSIQAGF 1683 (1807)
Q Consensus 1667 ~~l~~l~~~le~lk~~l 1683 (1807)
++++.|+.+-+.|+.++
T Consensus 208 KrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 208 KRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444433343333
No 254
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.38 E-value=0.096 Score=67.51 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHhh
Q psy2547 1212 YTKEFELLEKKIEDVKALVENTT-RSSHDLTVMLTTIDDMKKQI 1254 (1807)
Q Consensus 1212 ~~~~~~~le~~l~~lq~lL~~~~-~~~~~~~~l~~~l~~l~~~l 1254 (1807)
+..-+.+++.+|.+++.+-.... ....++..|+..+..+++++
T Consensus 99 fEkpi~ele~ki~el~~~~~~~~~~~~~ei~~Le~k~~~~~~~i 142 (762)
T PLN03229 99 FEKPLVDLEKKIVDVRKMANETGLDFSDQIISLESKYQQALKDL 142 (762)
T ss_pred hhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777665432111 11223444444444444444
No 255
>KOG1853|consensus
Probab=97.38 E-value=0.057 Score=59.54 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1748 QLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1748 ~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~ 1797 (1807)
.+.+.+...+.++.-|+.++.+.+. +...+..|+.+.+.++++|.-
T Consensus 137 DfeqrLnqAIErnAfLESELdEke~----llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 137 DFEQRLNQAIERNAFLESELDEKEV----LLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433322 333445555555555555543
No 256
>KOG1853|consensus
Probab=97.35 E-value=0.089 Score=58.08 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2547 1737 ARGQMLLNKASQLSVNTT 1754 (1807)
Q Consensus 1737 ~r~~~l~~~a~~l~~~~~ 1754 (1807)
..++.|+++++.|.+++.
T Consensus 164 esvqRLkdEardlrqela 181 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555443
No 257
>KOG0992|consensus
Probab=97.34 E-value=0.72 Score=56.24 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1757 LKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1757 ~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
+.+|..|...+.....+++.++..+.+|.+++.....-|+
T Consensus 480 ierivrLQ~a~arknekiefLe~h~~qlveevQKktKiiQ 519 (613)
T KOG0992|consen 480 IERIVRLQLAIARKNEKIEFLEQHLIQLVEEVQKKTKIIQ 519 (613)
T ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555666666666666555555544443
No 258
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=97.33 E-value=0.04 Score=70.64 Aligned_cols=27 Identities=0% Similarity=0.046 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAEL 1784 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~L 1784 (1807)
.++..|+++++..+..++.+..++++.
T Consensus 342 ~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 342 DEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 259
>KOG1899|consensus
Probab=97.33 E-value=0.021 Score=70.17 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1605 GADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSI 1679 (1807)
Q Consensus 1605 ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~l 1679 (1807)
+|.+++--|++-+..|+.+++.++.---.+..++.+.-++..++.+++-.+..+|++.++.++++...++.++++
T Consensus 140 KIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qev 214 (861)
T KOG1899|consen 140 KIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEV 214 (861)
T ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Confidence 344444444444444444433332222122233333333334444444444444444444444444444433333
No 260
>PLN02939 transferase, transferring glycosyl groups
Probab=97.31 E-value=0.082 Score=71.05 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1644 ARKDLSQITNDLDDAQQKSNETN 1666 (1807)
Q Consensus 1644 ~~~~l~~ie~~l~~~e~~l~~~e 1666 (1807)
++++..-++..+.+++.++..+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~ 284 (977)
T PLN02939 262 LEKERSLLDASLRELESKFIVAQ 284 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333334444444444443333
No 261
>PLN02939 transferase, transferring glycosyl groups
Probab=97.31 E-value=0.064 Score=71.98 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1769 SQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1769 ~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
+....++-++++++++++.+..+..+-.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 373 EIHSYIQLYQESIKEFQDTLSKLKEESK 400 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455566666666666666555433
No 262
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.27 E-value=0.074 Score=62.95 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1633 AIQTAKDDISAARKDLSQITNDLDDAQQKSNE 1664 (1807)
Q Consensus 1633 ~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~ 1664 (1807)
.-..+..++..+++++.+++.++.-+..++..
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 33344444445555555555444444444433
No 263
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.27 E-value=0.11 Score=59.50 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy2547 1777 LSKNIAELQK 1786 (1807)
Q Consensus 1777 le~el~~L~~ 1786 (1807)
.+++|..|+.
T Consensus 206 vd~eLa~LK~ 215 (219)
T TIGR02977 206 IERELAALKA 215 (219)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 264
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.26 E-value=0.078 Score=61.12 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy2547 1614 QKIVDVLTEART 1625 (1807)
Q Consensus 1614 ~~l~~~L~~a~~ 1625 (1807)
.+++..+.+++.
T Consensus 33 rd~e~~l~~a~~ 44 (221)
T PF04012_consen 33 RDMEEQLRKARQ 44 (221)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 265
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=97.26 E-value=0.068 Score=61.47 Aligned_cols=33 Identities=6% Similarity=0.186 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1639 DDISAARKDLSQITNDLDDAQQKSNETNVKVKL 1671 (1807)
Q Consensus 1639 ~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~ 1671 (1807)
+-++.+...+++-+.+.+.++..-.++..+|-.
T Consensus 85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~ 117 (401)
T PF06785_consen 85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFH 117 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444444444444444444444444433333
No 266
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=97.26 E-value=0.91 Score=56.03 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1607 DSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAA 1644 (1807)
Q Consensus 1607 ~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~ 1644 (1807)
..+..++.+++..|.+|...-..+...+......|..+
T Consensus 129 ~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL 166 (342)
T cd08915 129 KELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLL 166 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 35566666677777666666666665555555554444
No 267
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.26 E-value=0.029 Score=58.86 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy2547 1769 SQESELTEL 1777 (1807)
Q Consensus 1769 ~~e~~le~l 1777 (1807)
.++.+++++
T Consensus 109 ~~~~r~~dL 117 (132)
T PF07926_consen 109 ELEQRIEDL 117 (132)
T ss_pred HHHHHHHHH
Confidence 333333333
No 268
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=97.26 E-value=0.0085 Score=80.15 Aligned_cols=95 Identities=26% Similarity=0.615 Sum_probs=51.5
Q ss_pred CCCCcCCCCcccCCCCCCCCCCcCCCCCCCCCCCCccCCccccCCCCCceee-ecCCCCcC--------CCC---CCCCC
Q psy2547 893 ENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVIC-ECKEGYRG--------TRC---DGCLD 960 (1807)
Q Consensus 893 ~~Ce~C~~G~~G~~~~~~~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~~~~C-~C~~g~~G--------~~C---e~C~~ 960 (1807)
-.|..|.+|||-++. ..|.+|. .+ =..|... ....| .|+.||.= ..| ..|.+
T Consensus 559 g~Ct~C~~GYyl~~~----~~C~~Cd--~~-------C~~C~~~---~~~~C~sC~~g~yL~~~~~~~~g~Cv~~~~C~~ 622 (800)
T PTZ00214 559 GKCTTTKKGYGISPD----GKLLECD--PT-------CLACTAP---GPGRCTRCPSDKLLKRASGAATGSCVDPGACVD 622 (800)
T ss_pred CcccccccCcccCCC----Ccccccc--ch-------hhhccCC---CCCcceECCCCCEeccccccccccccCcccCCC
Confidence 468889999996543 2466553 10 0233211 12356 77777631 124 36888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCCCcccCCCC
Q psy2547 961 NYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCT 1026 (1807)
Q Consensus 961 g~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~~~~~~C~ 1026 (1807)
|||-+ +..|.+|. + -.|..|. ....|..|..+||-....+.|.
T Consensus 623 GYY~d----~~~C~~C~----~------------~~C~tC~---~~~~C~~C~~~~~ls~~~~~C~ 665 (800)
T PTZ00214 623 GYYAD----GDACLPCA----T------------PGCKTCG---HASFCTECAGELFVSLDGQSCL 665 (800)
T ss_pred CcccC----CCccccCC----c------------ccccccc---CCCCcCcCCCCceecCcCCchh
Confidence 88864 24577663 0 1233453 2346778888888554444454
No 269
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.16 Score=64.46 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=9.4
Q ss_pred HHhhCCCCChHHHHHHhHHh
Q psy2547 1530 EFLNAPGATLADIRNISGLA 1549 (1807)
Q Consensus 1530 ~~l~~~~~~~~~i~~la~~v 1549 (1807)
-|++........++.+...+
T Consensus 104 ~~INg~~Vs~~~L~~l~~~L 123 (557)
T COG0497 104 AFINGQPVSLAQLKELGQLL 123 (557)
T ss_pred EEECCEEeeHHHHHHHHHhh
Confidence 34444444444555555444
No 270
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=97.23 E-value=0.12 Score=65.85 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH
Q psy2547 1558 PEQIRERANEINNVIKSLTDID 1579 (1807)
Q Consensus 1558 ~~~I~~l~~~i~~~~~~L~~~~ 1579 (1807)
.-++++|..++...+..|..+.
T Consensus 355 DsE~qRLitEvE~cislLPav~ 376 (861)
T PF15254_consen 355 DSEVQRLITEVEACISLLPAVS 376 (861)
T ss_pred hHHHHHHHHHHHHHHHhhhhhh
Confidence 4456666666665555554443
No 271
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=97.22 E-value=0.12 Score=58.18 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy2547 1779 KNIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1779 ~el~~L~~el~~l~~~I~~ 1797 (1807)
..+..++..+..+.+.+..
T Consensus 177 ~~~~~l~~~~~~~~~~~~~ 195 (202)
T PF01442_consen 177 QRIEELESSIDRISEDIEE 195 (202)
T ss_dssp HHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 272
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=97.21 E-value=0.88 Score=60.42 Aligned_cols=28 Identities=4% Similarity=0.014 Sum_probs=13.4
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhhhhHH
Q psy2547 1552 KNIQSNPEQIRERANEINNVIKSLTDID 1579 (1807)
Q Consensus 1552 ~~i~~~~~~I~~l~~~i~~~~~~L~~~~ 1579 (1807)
..+|....+-+.+...+.++.+.+.=++
T Consensus 185 ~~lPtF~~~Desl~~~ll~L~arm~PLr 212 (683)
T PF08580_consen 185 FSLPTFSPQDESLYSSLLALFARMQPLR 212 (683)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhccchHH
Confidence 3445554444444455555544444333
No 273
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=97.21 E-value=0.075 Score=60.49 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1695 NEEKNLEKEVALAQKQASGLRS 1716 (1807)
Q Consensus 1695 ~~ae~a~~~a~~ae~~l~el~~ 1716 (1807)
+.++.++.++..++.++.+++.
T Consensus 113 ~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 113 EQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 274
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=97.18 E-value=0.12 Score=55.29 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1692 DVENEEKNLEKEVALAQKQASGLRSRYQETD 1722 (1807)
Q Consensus 1692 ~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~ 1722 (1807)
++=++|.+++-++..++++-..|..+.++++
T Consensus 81 ~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LE 111 (159)
T PF05384_consen 81 EAYEEAHELQVRLAMLREREKQLRERRDELE 111 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333333333333
No 275
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=97.18 E-value=0.06 Score=67.37 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2547 1739 GQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSN 1800 (1807)
Q Consensus 1739 ~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~ 1800 (1807)
++.|.++|..+...+......+..+...++..+..|..++..+.+-.+.|..-...|++++.
T Consensus 324 L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~ 385 (388)
T PF04912_consen 324 LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIA 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444556666666666666666777777777777777777766666666666666666654
No 276
>KOG4360|consensus
Probab=97.17 E-value=0.071 Score=64.72 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2547 1692 DVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQML 1742 (1807)
Q Consensus 1692 ~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l 1742 (1807)
...+++.++..++...++++....+++....+.+..+..++.++..+++.+
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~ 252 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYL 252 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444444444444333333333333333333333333333333
No 277
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=97.16 E-value=0.06 Score=66.21 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHh
Q psy2547 1486 ITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLA 1549 (1807)
Q Consensus 1486 ~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~v 1549 (1807)
+...+.+++..+..|.-+...|..+.+.++.. -+.+|+.| ..+|..|..+.+.|
T Consensus 73 i~~~~~~a~~~L~~a~P~L~~A~~al~~l~k~------di~Eiks~----~~PP~~V~~V~~aV 126 (344)
T PF12777_consen 73 IEEIKEEAEEELAEAEPALEEAQEALKSLDKS------DISEIKSY----ANPPEAVKLVMEAV 126 (344)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHCS-HH------HHHHHHHS----SS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHhh----CCCcHHHHHHHHHH
Confidence 33334444444444444444444444443321 23344544 24455666666666
No 278
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=97.16 E-value=0.02 Score=71.49 Aligned_cols=90 Identities=24% Similarity=0.658 Sum_probs=47.6
Q ss_pred CCCCCCCCCCcCCCCCCCcC-CC-CCCCCCCCCcccCCCCcc-cCCCC-c----cCCCCCCCCCCCCCCC-CCccCCCCC
Q psy2547 801 RRCDRCAPGTYGFGPEGCKA-CD-CNHVGALDNICDVVSGQC-KCRAQ-T----YGRECDQCSPGYWNYP-TCQRCICNG 871 (1807)
Q Consensus 801 ~~C~~C~~g~~~~~~~~C~~-C~-C~~~g~~~~~C~~~~g~C-~C~~g-~----~G~~C~~C~~g~~~~~-~C~~C~C~~ 871 (1807)
..|.+|..+||......|.. |. |.... ...+......| .|..+ + .-..|..|++|||-.. .|.+|.
T Consensus 37 ~~Ct~C~~~~~lt~t~~Ci~~C~~c~~~~--~~t~~~~~~~C~~C~~~~~~~~~~~~~c~~C~~G~y~~~~~C~~C~--- 111 (397)
T PF03302_consen 37 EVCTECNSGYYLTPTNQCIEDCAKCSNYY--CSTCGNDKKTCKKCSIGNCLTCSGDACCSECPDGYYKNGNKCVPCH--- 111 (397)
T ss_pred CccCcCCCCCcCCCCCccccCcccccccc--ccccccccccccccccccccccccCccccCCCCCccccCCCCCCCC---
Confidence 57888888888665444432 11 11110 11122222344 34322 1 1235888999999542 466654
Q ss_pred CCCCCCCCCCCccCCCCCccCCCCCcCCCCcccC
Q psy2547 872 HADLCDSKTGTCISCRNSTDGENCERCINGYYGD 905 (1807)
Q Consensus 872 ~~~~Cd~~tg~C~~C~~~~~G~~Ce~C~~G~~G~ 905 (1807)
-.|..|..+ ....|..|.+||+-.
T Consensus 112 ---------~~C~~C~~~-~~~~Ct~C~~g~~L~ 135 (397)
T PF03302_consen 112 ---------ESCATCSGG-APNQCTSCKPGKVLK 135 (397)
T ss_pred ---------ccccccCCC-CCCCCcccCCCcccc
Confidence 124456554 355688888888643
No 279
>KOG4260|consensus
Probab=97.14 E-value=0.00033 Score=77.45 Aligned_cols=103 Identities=24% Similarity=0.653 Sum_probs=63.0
Q ss_pred cCCCcccccccccCCCCcccCCCCCCC-CCCCCCCCCCCCCCccCCCCccccCCCcccCCCCcCCCCccCCCCC----CC
Q psy2547 1051 CLPNVIGVSCDRCLKNHWKIASGTGCE-PCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNV----EC 1125 (1807)
Q Consensus 1051 C~~g~~G~~C~~C~~g~~~~~~~~~C~-~c~C~~~gs~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~~----~C 1125 (1807)
|++|+.|+.|.+|+-|.- ..|. .-.|+..||... +|.|.|.+||+|..|..|..+||-.... -|
T Consensus 132 Cp~gtyGpdCl~Cpggse-----r~C~GnG~C~GdGsR~G------sGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvC 200 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSE-----RPCFGNGSCHGDGSREG------SGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVC 200 (350)
T ss_pred cCCCCcCCccccCCCCCc-----CCcCCCCcccCCCCCCC------CCcccccCCCCCccccccchHHHHhhcccccchh
Confidence 555555666665544321 1121 123555565554 8999999999999999999999975432 45
Q ss_pred ccCCCCCCCCCCCccccCCceEeccCCccccCCCcCCCCCccCCCCCCCCCCc
Q psy2547 1126 FPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGEC 1178 (1807)
Q Consensus 1126 ~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~C~~C~~c 1178 (1807)
..|+=.- .+.| .|-+-+.|.+|..||..+-.+|..=++|
T Consensus 201 t~Ch~~C----~~~C----------sg~~~k~C~kCkkGW~lde~gCvDvnEC 239 (350)
T KOG4260|consen 201 TACHEGC----LGVC----------SGESSKGCSKCKKGWKLDEEGCVDVNEC 239 (350)
T ss_pred hhhhhhh----hccc----------CCCCCCChhhhcccceecccccccHHHH
Confidence 5553000 0112 2334467888888888776677654444
No 280
>PRK09793 methyl-accepting protein IV; Provisional
Probab=97.14 E-value=1.8 Score=56.90 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q psy2547 1780 NIAELQKRIQSCINFIVDKSNNY 1802 (1807)
Q Consensus 1780 el~~L~~el~~l~~~I~~~~~~Y 1802 (1807)
++.....++...-+.|.+.+..|
T Consensus 489 ~~~~~~~~l~~~a~~l~~~v~~F 511 (533)
T PRK09793 489 EAAVATEQLANQADHLSSRVAVF 511 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444443
No 281
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=97.14 E-value=1.9 Score=57.07 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy2547 1779 KNIAELQKRIQ 1789 (1807)
Q Consensus 1779 ~el~~L~~el~ 1789 (1807)
.++.++-.++.
T Consensus 497 ~~l~~~a~~L~ 507 (553)
T PRK15048 497 AALEEQASRLT 507 (553)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 282
>KOG1214|consensus
Probab=97.13 E-value=0.0043 Score=77.95 Aligned_cols=221 Identities=27% Similarity=0.558 Sum_probs=109.3
Q ss_pred CCCCcc-CCCCCcCCCCcccCCCCC-CCCCCcCCCCCCCCCCCCccCCccccCCCCCceeeecCCCCc--CC--CCCCCC
Q psy2547 886 CRNSTD-GENCERCINGYYGDPRLG-IDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYR--GT--RCDGCL 959 (1807)
Q Consensus 886 C~~~~~-G~~Ce~C~~G~~G~~~~~-~~~~C~~c~C~~~~~~~~~~~~~C~~~~~~~~~~C~C~~g~~--G~--~Ce~C~ 959 (1807)
|.+++. -+.| .|..||-|++..- .++.|..|+=.=++ ...|..++. .++|.|..||. |+ .|-.=+
T Consensus 708 C~pg~~~~~tc-ecs~g~~gdgr~c~d~~eca~~~~~CGp------~s~Cin~pg--~~rceC~~gy~F~dd~~tCV~i~ 778 (1289)
T KOG1214|consen 708 CHPGTGVDYTC-ECSSGYQGDGRNCVDENECATGFHRCGP------NSVCINLPG--SYRCECRSGYEFADDRHTCVLIT 778 (1289)
T ss_pred ccCCCCcceEE-EEeeccCCCCCCCCChhhhccCCCCCCC------CceeecCCC--ceeEEEeecceeccCCcceEEec
Confidence 444432 3455 4888888887542 12345544422121 146766664 57777777763 33 343211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCC-CCCCCcccCCCCCCcc--c--CCCCCCcCCCCC
Q psy2547 960 DNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTE-GDHCQVCKAGFFGNAL--E--QNCTECTCNILG 1034 (1807)
Q Consensus 960 ~g~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~-G~~C~~C~~G~~G~~~--~--~~C~~C~C~~~g 1034 (1807)
+----+||..| .-.|+ ..|+|. |.+.-. -+.| .|.|||-|+.- . +.|.+-.|++..
T Consensus 779 ~pap~n~Ce~g----------------~h~C~-i~g~a~-c~~hGgs~y~C-~CLPGfsGDG~~c~dvDeC~psrChp~A 839 (1289)
T KOG1214|consen 779 PPAPANPCEDG----------------SHTCA-IAGQAR-CVHHGGSTYSC-ACLPGFSGDGHQCTDVDECSPSRCHPAA 839 (1289)
T ss_pred CCCCCCccccC----------------ccccC-cCCceE-EEecCCceEEE-eecCCccCCccccccccccCccccCCCc
Confidence 11001111111 12343 245553 554332 2446 78888887742 2 678888888875
Q ss_pred CCCCCCCCcCCCC--ccccCCCcccccccccCCCCcccCCCCCCC-----CCCCCCCCCCCCCCccCCCC-ccccCCCcc
Q psy2547 1035 IDHSKGPCDRTTG--QCPCLPNVIGVSCDRCLKNHWKIASGTGCE-----PCDCDPIGSVDVTECNEYTG-QCQCKSGFG 1106 (1807)
Q Consensus 1035 ~~~~~~~C~~~tG--~C~C~~g~~G~~C~~C~~g~~~~~~~~~C~-----~c~C~~~gs~~~~~C~~~tg-~C~C~~g~~ 1106 (1807)
+ |-...| .|.|.|||.|.- -+|.|+. .+...|+ +=.|+.. -+-.-|....| +|+|+++-.
T Consensus 840 ~------CyntpgsfsC~C~pGy~GDG-f~CVP~~---~~~T~C~~er~hpl~chg~--t~~~~~~Dp~~~e~p~~~~pp 907 (1289)
T KOG1214|consen 840 T------CYNTPGSFSCRCQPGYYGDG-FQCVPDT---SSLTPCEQERFHPLQCHGS--TGFCWCVDPDGHEVPGTQTPP 907 (1289)
T ss_pred e------EecCCCcceeecccCccCCC-ceecCCC---ccCCccccccccceeeccc--cceeEeeCCCcccCCCCCCCC
Confidence 4 443334 799999887742 1234431 1223342 1122211 11001333333 788888877
Q ss_pred cCCCCcCCCCccCCCCCCCccCCCCCCCC-CCCccccCCceEeccCC
Q psy2547 1107 GRQCDQCQTNFWGNPNVECFPCDCDPSGS-ATSQCHQNNGTCVCHQG 1152 (1807)
Q Consensus 1107 G~~C~~C~~g~~g~~~~~C~~C~C~~~gs-~~~~C~~~tG~C~C~~g 1152 (1807)
|..=..|.+- +...|..|+ ..|- ...+|+-.+++|.|-.+
T Consensus 908 G~~~~~c~~~----~~~~vp~Cd--~hgh~ap~qchG~~~~CwCvd~ 948 (1289)
T KOG1214|consen 908 GSTPPHCGPS----PEQYVPQCD--DHGHFAPLQCHGKSDFCWCVDK 948 (1289)
T ss_pred CCCCCCCCCc----ccccCCCcc--ccccccccccCCCcceeEEecC
Confidence 7332333222 112343333 3332 23578888999999774
No 283
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=97.12 E-value=0.34 Score=58.56 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l 1791 (1807)
....++...+.+-.+=+.++...+.++.+++...
T Consensus 255 ~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f 288 (296)
T PF13949_consen 255 DAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDF 288 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443
No 284
>PHA03247 large tegument protein UL36; Provisional
Probab=97.12 E-value=3.5 Score=59.86 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=5.8
Q ss_pred CCCccceeecc
Q psy2547 64 HGNSTFCIVSF 74 (1807)
Q Consensus 64 ~~~~~~c~~~~ 74 (1807)
.++-.||...+
T Consensus 72 ~~~p~mc~~~E 82 (3151)
T PHA03247 72 SGPPRMCSIVE 82 (3151)
T ss_pred CCCCceecccc
Confidence 34556776433
No 285
>KOG1899|consensus
Probab=97.12 E-value=0.044 Score=67.47 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1758 KQLNETEAMFNSQESELTELSKNIAEL 1784 (1807)
Q Consensus 1758 ~~l~~Le~~i~~~e~~le~le~el~~L 1784 (1807)
.+.+.|..-++.+...-+++.+.|+.|
T Consensus 274 ~rd~~lk~a~eslm~ane~kdr~ie~l 300 (861)
T KOG1899|consen 274 LRDNTLKNALESLMRANEQKDRFIESL 300 (861)
T ss_pred hHHHHHHHHHHHHHhhchhhhhHHHHH
Confidence 333344444444333333333333333
No 286
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=97.10 E-value=0.73 Score=56.85 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=5.0
Q ss_pred HHHHHHHhhhhhc
Q psy2547 1790 SCINFIVDKSNNY 1802 (1807)
Q Consensus 1790 ~l~~~I~~~~~~Y 1802 (1807)
.+...|.+-..||
T Consensus 309 el~~~l~eG~~FY 321 (342)
T cd08915 309 ELKENLNEGSKFY 321 (342)
T ss_pred HHHHhHHHHHHHH
Confidence 3333333333333
No 287
>KOG0992|consensus
Probab=97.09 E-value=1.3 Score=54.23 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1779 KNIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1779 ~el~~L~~el~~l~~~I 1795 (1807)
..|.+|+.++......|
T Consensus 403 ~tikeL~~El~~yrr~i 419 (613)
T KOG0992|consen 403 ETIKELEIELEEYRRAI 419 (613)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444444444444443
No 288
>KOG0244|consensus
Probab=97.09 E-value=2.1 Score=56.79 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=19.1
Q ss_pred HHHHhhhhcccccCCCcc--hhHHHHHHHHHHHHHHHHH
Q psy2547 1194 TKVITDASNIKQTGASGA--YTKEFELLEKKIEDVKALV 1230 (1807)
Q Consensus 1194 ~~l~~~~~~~~~~~~~~~--~~~~~~~le~~l~~lq~lL 1230 (1807)
....+++..++...+... ....+..+..+|+.++..+
T Consensus 308 l~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~el 346 (913)
T KOG0244|consen 308 LRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVEL 346 (913)
T ss_pred HHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 344456666655443332 2234555666666666544
No 289
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=97.09 E-value=0.9 Score=52.42 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2547 1750 SVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKS 1799 (1807)
Q Consensus 1750 ~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~ 1799 (1807)
..+.....+.|..-.+.|++++.++..+.+++.+|..+..+.+..|=..+
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dv 234 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADV 234 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHH
Confidence 33444555666666777778888888888888888888887777665554
No 290
>KOG4286|consensus
Probab=97.08 E-value=0.45 Score=60.45 Aligned_cols=36 Identities=6% Similarity=-0.087 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1491 QESHAANILAKEAYDHAASVRNKTAAYVASTSNITK 1526 (1807)
Q Consensus 1491 ~~~~~a~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~ 1526 (1807)
..-++.+.+....+...+.+.++-+.....++++++
T Consensus 78 ~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~ 113 (966)
T KOG4286|consen 78 FKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLV 113 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334445555555555555555555555555555554
No 291
>KOG0993|consensus
Probab=97.05 E-value=1.1 Score=53.06 Aligned_cols=28 Identities=7% Similarity=0.173 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1643 AARKDLSQITNDLDDAQQKSNETNVKVK 1670 (1807)
Q Consensus 1643 ~~~~~l~~ie~~l~~~e~~l~~~e~~l~ 1670 (1807)
.++..|.+++.++......|-.+...|.
T Consensus 349 tlq~~iSqaq~~vq~qma~lv~a~e~i~ 376 (542)
T KOG0993|consen 349 TLQAEISQAQSEVQKQMARLVVASETIA 376 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333333333
No 292
>KOG4360|consensus
Probab=97.04 E-value=0.2 Score=61.07 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1653 NDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAES 1731 (1807)
Q Consensus 1653 ~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~ 1731 (1807)
+++....++++.....+..|..+|-++++++..+....+++..-+...++.-+.++.+++++++++++....+.+.+++
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeE 297 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEE 297 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444333333333333333333444444444555555555444444443333
No 293
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=97.02 E-value=0.091 Score=64.63 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2547 1288 IKKLNKTGEMLKENAT 1303 (1807)
Q Consensus 1288 l~~l~~~~~~l~~~~~ 1303 (1807)
|.+.+..++.++.++.
T Consensus 10 L~et~~~V~~m~~~L~ 25 (344)
T PF12777_consen 10 LKETEEQVEEMQEELE 25 (344)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 294
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.99 E-value=0.23 Score=63.91 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1676 LKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQET 1721 (1807)
Q Consensus 1676 le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~ 1721 (1807)
+..++.++..++..+.++..++.....++..++.++.+++..+...
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e 332 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAE 332 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555554444433
No 295
>KOG2008|consensus
Probab=96.98 E-value=1.1 Score=51.48 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2547 1752 NTTAKLKQLNETEAMF 1767 (1807)
Q Consensus 1752 ~~~~~~~~l~~Le~~i 1767 (1807)
.++.+.+.+..|+.++
T Consensus 191 ~le~qk~tv~~Leaev 206 (426)
T KOG2008|consen 191 QLEQQKKTVDDLEAEV 206 (426)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333344333
No 296
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.97 E-value=0.14 Score=56.42 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1706 LAQKQASGLRSRYQETDNKLLS 1727 (1807)
Q Consensus 1706 ~ae~~l~el~~~l~~~~~~l~~ 1727 (1807)
.+..+++.|...+.......++
T Consensus 135 ~l~~e~erL~aeL~~er~~~e~ 156 (202)
T PF06818_consen 135 SLRREVERLRAELQRERQRREE 156 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444444444444333
No 297
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=96.94 E-value=1.7 Score=53.26 Aligned_cols=17 Identities=6% Similarity=0.350 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1774 LTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1774 le~le~el~~L~~el~~ 1790 (1807)
..+.+.+|.+++.+++.
T Consensus 311 r~~~~~~l~~l~~~lk~ 327 (333)
T PF05816_consen 311 RAQAEQELEQLEEELKQ 327 (333)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444333
No 298
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=96.93 E-value=1 Score=50.48 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy2547 1557 NPEQIRERANEINNVIKS 1574 (1807)
Q Consensus 1557 ~~~~I~~l~~~i~~~~~~ 1574 (1807)
...-++.|..+|.++...
T Consensus 61 y~kiletlnkeiaeatks 78 (353)
T PF01540_consen 61 YSKILETLNKEIAEATKS 78 (353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 299
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.93 E-value=0.39 Score=62.19 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHH
Q psy2547 1439 NEKESKAEELRKHMI 1453 (1807)
Q Consensus 1439 ~e~~~~~eeL~~~~~ 1453 (1807)
..++.+++.|++++.
T Consensus 432 ~~Le~elekLk~eil 446 (762)
T PLN03229 432 RELEGEVEKLKEQIL 446 (762)
T ss_pred ccHHHHHHHHHHHHH
Confidence 467788888887764
No 300
>PTZ00332 paraflagellar rod protein; Provisional
Probab=96.92 E-value=1.7 Score=53.06 Aligned_cols=10 Identities=10% Similarity=0.395 Sum_probs=4.1
Q ss_pred CchhHHHHHH
Q psy2547 1418 NGTLSESNSA 1427 (1807)
Q Consensus 1418 ~~a~~~a~~A 1427 (1807)
+|-+..|++-
T Consensus 207 ~GEM~~AEe~ 216 (589)
T PTZ00332 207 DGEMQVAEEQ 216 (589)
T ss_pred cchhHHHHHH
Confidence 3444444333
No 301
>KOG4807|consensus
Probab=96.91 E-value=1.4 Score=51.83 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=14.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhh
Q psy2547 1554 IQSNPEQIRERANEINNVIKSLT 1576 (1807)
Q Consensus 1554 i~~~~~~I~~l~~~i~~~~~~L~ 1576 (1807)
-|.+.++...|.++|.+....|+
T Consensus 240 ~~l~Edq~~~LsE~~~k~~q~Le 262 (593)
T KOG4807|consen 240 APLTEDQQNRLSEEIEKKWQELE 262 (593)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776665554443
No 302
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=96.91 E-value=0.41 Score=58.78 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhhhhcC
Q psy2547 1787 RIQSCINFIVDKSNNYK 1803 (1807)
Q Consensus 1787 el~~l~~~I~~~~~~Y~ 1803 (1807)
...++...|.+-..||+
T Consensus 301 ~y~el~~~l~eG~~FY~ 317 (337)
T cd09234 301 AYEDLLKKSQKGIDFYK 317 (337)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 34444444444455543
No 303
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=96.90 E-value=0.32 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1769 SQESELTELSKNIAELQKRIQSCIN 1793 (1807)
Q Consensus 1769 ~~e~~le~le~el~~L~~el~~l~~ 1793 (1807)
.+.-++..++.+|..|.++|+..++
T Consensus 167 sL~~e~~~~~~di~~Li~~m~~sI~ 191 (201)
T PF11172_consen 167 SLQGEFSSIESDISQLIKEMERSIA 191 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 304
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.88 E-value=0.1 Score=67.03 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1769 SQESELTELSKNIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1769 ~~e~~le~le~el~~L~~el~~l~~~I 1795 (1807)
....++.+++.++..++.+++.....+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 305
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.87 E-value=0.38 Score=53.39 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1767 FNSQESELTELSKNIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1767 i~~~e~~le~le~el~~L~~el~~l~~~I 1795 (1807)
+......++.+..+|..|+.+++.+...|
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555566666666665555544
No 306
>KOG0804|consensus
Probab=96.85 E-value=0.044 Score=65.74 Aligned_cols=11 Identities=45% Similarity=1.099 Sum_probs=4.3
Q ss_pred CCCCCCcccch
Q psy2547 1172 CSPCGECFDNW 1182 (1807)
Q Consensus 1172 C~~C~~c~~~~ 1182 (1807)
|..|+.++++|
T Consensus 231 c~~c~~~~~Lw 241 (493)
T KOG0804|consen 231 CLACGCTEDLW 241 (493)
T ss_pred hhhhcccccEE
Confidence 33343344433
No 307
>KOG4302|consensus
Probab=96.85 E-value=2.9 Score=54.48 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=6.1
Q ss_pred hhhhHHHHHHHHHHH
Q psy2547 1438 INEKESKAEELRKHM 1452 (1807)
Q Consensus 1438 i~e~~~~~eeL~~~~ 1452 (1807)
+...++++.+|...+
T Consensus 70 ia~~eael~~l~s~l 84 (660)
T KOG4302|consen 70 IAVIEAELNDLCSAL 84 (660)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444433
No 308
>KOG4438|consensus
Probab=96.85 E-value=1.9 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=13.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHh
Q psy2547 1553 NIQSNPEQIRERANEINNVIKS 1574 (1807)
Q Consensus 1553 ~i~~~~~~I~~l~~~i~~~~~~ 1574 (1807)
.|..+|+.+....++...++..
T Consensus 238 qIV~sPeKL~~~leemk~~l~k 259 (446)
T KOG4438|consen 238 QIVQSPEKLKEALEEMKDLLQK 259 (446)
T ss_pred HHcCCHHHHHHHHHHHHHHHHH
Confidence 5566777777776666655544
No 309
>KOG1214|consensus
Probab=96.84 E-value=0.0071 Score=76.11 Aligned_cols=54 Identities=22% Similarity=0.692 Sum_probs=31.3
Q ss_pred CceeeecCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCCCCcccCCCCCC
Q psy2547 940 QDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGN 1019 (1807)
Q Consensus 940 ~~~~C~C~~g~~G~~Ce~C~~g~~g~p~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~~~~G~~C~~C~~G~~G~ 1019 (1807)
+.+.|.|.|||.|+- ..|..+..|.|=.|..+. .|.+.-..+.| +|.|||||+
T Consensus 807 s~y~C~CLPGfsGDG----------~~c~dvDeC~psrChp~A----------------~CyntpgsfsC-~C~pGy~GD 859 (1289)
T KOG1214|consen 807 STYSCACLPGFSGDG----------HQCTDVDECSPSRCHPAA----------------TCYNTPGSFSC-RCQPGYYGD 859 (1289)
T ss_pred ceEEEeecCCccCCc----------cccccccccCccccCCCc----------------eEecCCCccee-ecccCccCC
Confidence 578999999998852 111123455554454431 23332233445 788999987
Q ss_pred c
Q psy2547 1020 A 1020 (1807)
Q Consensus 1020 ~ 1020 (1807)
.
T Consensus 860 G 860 (1289)
T KOG1214|consen 860 G 860 (1289)
T ss_pred C
Confidence 5
No 310
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.80 E-value=0.09 Score=59.15 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy2547 1783 ELQKRIQSCINFIV 1796 (1807)
Q Consensus 1783 ~L~~el~~l~~~I~ 1796 (1807)
+|..+|.+++..|+
T Consensus 289 EL~ski~ELE~rLq 302 (307)
T PF10481_consen 289 ELRSKINELELRLQ 302 (307)
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444433333
No 311
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.77 E-value=0.15 Score=65.41 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1763 TEAMFNSQESELTELSKNIAELQKRI 1788 (1807)
Q Consensus 1763 Le~~i~~~e~~le~le~el~~L~~el 1788 (1807)
+..++...+.++..++.++..++..+
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555544444
No 312
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=96.76 E-value=2.5 Score=52.47 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1607 DSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAA 1644 (1807)
Q Consensus 1607 ~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~ 1644 (1807)
..+..++.+++..|.+|...-..+...++.....|..+
T Consensus 124 ~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL 161 (356)
T cd09237 124 ASLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALL 161 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777776666666666665555554
No 313
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=96.76 E-value=0.19 Score=54.14 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1740 QMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRI 1788 (1807)
Q Consensus 1740 ~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el 1788 (1807)
+.|+.+--.|.....-...+|+.|+.++..-+.+-.-+.++-++|+..+
T Consensus 123 e~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~l 171 (178)
T PF14073_consen 123 EKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQTGL 171 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333333344333333334455555555444444444444444444443
No 314
>KOG4460|consensus
Probab=96.74 E-value=0.21 Score=61.09 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1765 AMFNSQESELTELSKNIAELQKRIQSCINF 1794 (1807)
Q Consensus 1765 ~~i~~~e~~le~le~el~~L~~el~~l~~~ 1794 (1807)
.+...++.-|.++..++.+..++++.++..
T Consensus 709 ~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~ 738 (741)
T KOG4460|consen 709 YQRKCIQSILKELGEHIREMVKQVKDIRNH 738 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555556666666666655543
No 315
>PF15294 Leu_zip: Leucine zipper
Probab=96.71 E-value=0.75 Score=53.45 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy2547 1558 PEQIRERANEINNV 1571 (1807)
Q Consensus 1558 ~~~I~~l~~~i~~~ 1571 (1807)
.+++.++.+.|...
T Consensus 32 ~~EV~~~ldgL~~~ 45 (278)
T PF15294_consen 32 SDEVTEMLDGLQVV 45 (278)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 316
>KOG4677|consensus
Probab=96.71 E-value=2.3 Score=51.36 Aligned_cols=15 Identities=0% Similarity=0.065 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy2547 1777 LSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1777 le~el~~L~~el~~l 1791 (1807)
+...|.+-..++..+
T Consensus 506 a~s~VD~~s~~l~~~ 520 (554)
T KOG4677|consen 506 ARSKVDKGSAELEKI 520 (554)
T ss_pred HHhhcchhhHHHHHH
Confidence 333344444444433
No 317
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=96.70 E-value=4 Score=53.96 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy2547 1778 SKNIAELQKRIQS 1790 (1807)
Q Consensus 1778 e~el~~L~~el~~ 1790 (1807)
..+|.++..+|..
T Consensus 498 ~~~l~~~a~~L~~ 510 (554)
T PRK15041 498 AAALEEQASRLTE 510 (554)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 318
>KOG1850|consensus
Probab=96.69 E-value=1.8 Score=49.95 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1752 NTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQ 1789 (1807)
Q Consensus 1752 ~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~ 1789 (1807)
+++.....|+.|++-...+..+-.++...+..++.++.
T Consensus 293 ~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~ 330 (391)
T KOG1850|consen 293 EYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVS 330 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccc
Confidence 33344444444444444444444444444444444443
No 319
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.66 E-value=0.24 Score=52.07 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1768 NSQESELTELSKNIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1768 ~~~e~~le~le~el~~L~~el~~l~~~I 1795 (1807)
..++.++..+..++..|..+-.-+.+.|
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444444
No 320
>KOG0244|consensus
Probab=96.65 E-value=0.4 Score=63.23 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1763 TEAMFNSQESELTELSKNIAELQKRIQSCI 1792 (1807)
Q Consensus 1763 Le~~i~~~e~~le~le~el~~L~~el~~l~ 1792 (1807)
++...++...-+.....+...+.+++.++.
T Consensus 637 ~~~l~~~q~~vl~~kt~eas~~~krlk~a~ 666 (913)
T KOG0244|consen 637 LEVLVKKQNYVLQRKTEEASAANKRLKEAL 666 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555666666666655443
No 321
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.64 E-value=0.4 Score=55.49 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1651 ITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQA 1711 (1807)
Q Consensus 1651 ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l 1711 (1807)
+.+++-.+..-+..+..+...|+.-+..++++-..++..++++..+..+-+.+...+.+++
T Consensus 111 L~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 111 LKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333333
No 322
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.64 E-value=0.12 Score=58.09 Aligned_cols=86 Identities=6% Similarity=0.149 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1634 IQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASG 1713 (1807)
Q Consensus 1634 l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~e 1713 (1807)
|+.++..+...+++......++..++.+...+....+.+++..+.+...+.--+..+.-++.++..++.+++.++.++..
T Consensus 41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr 120 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKR 120 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444443333333333334444444444444444444444
Q ss_pred HHHHHH
Q psy2547 1714 LRSRYQ 1719 (1807)
Q Consensus 1714 l~~~l~ 1719 (1807)
++.+++
T Consensus 121 ~KsELE 126 (307)
T PF10481_consen 121 CKSELE 126 (307)
T ss_pred HHHHHH
Confidence 444444
No 323
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=96.63 E-value=0.0031 Score=65.45 Aligned_cols=67 Identities=24% Similarity=0.382 Sum_probs=57.4
Q ss_pred CCCccccccccCCCCCCccccccCCCCcceeEEEeccceeEEEEEEEEEcCC----CCCcEEEEEecCCCCCccchh
Q psy2547 97 SHKIHNIVYATVPRTKTISWWQSENGVENVTIQLDMEAEFHFTHLIIYFKTF----RPAAMLIERSHDFGKTWQVYR 169 (1807)
Q Consensus 97 ~h~~~~~~~~~~~~~~~~~wwqs~~~~~~v~i~l~l~~~f~~~~~~~~f~s~----rP~~~~iers~d~g~~w~~~q 169 (1807)
.+++++++|. +..|+|.+........|++||++.+.|..|.|.+... +|..+.|+-|.| |.+|++..
T Consensus 14 ~~~~~~~~Dg-----~~~t~W~~~~~~~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s~d-g~~w~~~~ 84 (129)
T PF00754_consen 14 AEPASNAFDG-----DPSTAWCSNWDDSPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYSND-GSNWTTVA 84 (129)
T ss_dssp GGGGGGGGSS-----STTSSEEESSSSSTEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEESS-SSSEEEEE
T ss_pred cchHHheEeC-----CCCCEEECCCCCCCceEEEEeeeeEecceeeecccccccceeeeeeeeeeecc-cccccccc
Confidence 3479999985 4679999987667788999999999999999999644 999999999988 79998775
No 324
>KOG2991|consensus
Probab=96.62 E-value=1.4 Score=49.34 Aligned_cols=61 Identities=10% Similarity=0.158 Sum_probs=33.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1729 AESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQ 1789 (1807)
Q Consensus 1729 ~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~ 1789 (1807)
+...++++.....|.+-+..|.++++.....|--|..+++..+.+|+.+...++.+.+.+.
T Consensus 249 Ks~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 249 KSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444555555555555555555555555555566666666666655555555554443
No 325
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.57 E-value=2.5 Score=50.04 Aligned_cols=6 Identities=0% Similarity=-0.091 Sum_probs=2.2
Q ss_pred HHhhhh
Q psy2547 1795 IVDKSN 1800 (1807)
Q Consensus 1795 I~~~~~ 1800 (1807)
|+.-+.
T Consensus 240 i~~fv~ 245 (261)
T cd07648 240 LRQFVE 245 (261)
T ss_pred HHHHHH
Confidence 333333
No 326
>KOG4787|consensus
Probab=96.57 E-value=0.35 Score=59.43 Aligned_cols=20 Identities=30% Similarity=0.286 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHhhhhhh
Q psy2547 1441 KESKAEELRKHMIILSESNS 1460 (1807)
Q Consensus 1441 ~~~~~eeL~~~~~~~~~~~~ 1460 (1807)
+...++.-.+...++++.+.
T Consensus 464 L~~~LeqAsK~CRIL~~RL~ 483 (852)
T KOG4787|consen 464 LATKLEQANKQCRILNERLN 483 (852)
T ss_pred HHHHHHHHhchhHHHHHHHh
Confidence 33334433344444444443
No 327
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=4 Score=52.14 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=9.4
Q ss_pred hhcccchhHHHhhccCC
Q psy2547 1380 LEKNLPDLNELICDKRG 1396 (1807)
Q Consensus 1380 l~~~L~~l~~~icg~~~ 1396 (1807)
++..+-.+++.+|.+++
T Consensus 445 I~~~~l~vR~~LC~~L~ 461 (1104)
T COG4913 445 IEYRLLQVRENLCQDLG 461 (1104)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 33334456677777653
No 328
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=96.54 E-value=4.2 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1770 QESELTELSKNIAELQKRIQSCI 1792 (1807)
Q Consensus 1770 ~e~~le~le~el~~L~~el~~l~ 1792 (1807)
+-.+|+.+...|+.|+.+|.+..
T Consensus 713 la~rl~~ma~~lerl~ee~~~ti 735 (828)
T PF04094_consen 713 LALRLDEMAADLERLEEEVGETI 735 (828)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 33445555555555555544433
No 329
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.085 Score=65.89 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1619 VLTEARTAQDMAEVAIQTAKDDIS 1642 (1807)
Q Consensus 1619 ~L~~a~~~~~~a~~~l~~a~~~i~ 1642 (1807)
+|..|-.+....+..+..++..+.
T Consensus 346 ALAAA~kAY~~yk~kl~~vEr~~~ 369 (652)
T COG2433 346 ALAAAYKAYLAYKPKLEKVERKLP 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344444444444444444443
No 330
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=96.51 E-value=0.95 Score=48.95 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q psy2547 1595 LKRKANLTKA 1604 (1807)
Q Consensus 1595 L~~~a~~a~~ 1604 (1807)
|..++..++.
T Consensus 9 LQeKIrrLEL 18 (178)
T PF14073_consen 9 LQEKIRRLEL 18 (178)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 331
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.21 Score=62.58 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=4.9
Q ss_pred hHHHHHHhHH
Q psy2547 1539 LADIRNISGL 1548 (1807)
Q Consensus 1539 ~~~i~~la~~ 1548 (1807)
|..+++++..
T Consensus 301 P~~V~KiAas 310 (652)
T COG2433 301 PETVKKIAAS 310 (652)
T ss_pred hHHHHHHHHH
Confidence 4445555544
No 332
>KOG3595|consensus
Probab=96.50 E-value=2.5 Score=61.49 Aligned_cols=45 Identities=24% Similarity=0.153 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1471 LINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTA 1515 (1807)
Q Consensus 1471 ~l~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e 1515 (1807)
.+...+++++.....++..+..+.+-.+.|.-+...|..+.+.+.
T Consensus 774 ~v~~~e~~~~~~~~~~~~~k~~v~~~l~~a~P~leeA~aal~ti~ 818 (1395)
T KOG3595|consen 774 AVLEDEKKAQEKAGLIQAQKAEVEEDLEEAEPALEEASAALSTIK 818 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence 333444444444555555555555555555555655555554443
No 333
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.47 E-value=0.023 Score=63.85 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1690 AMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNS 1769 (1807)
Q Consensus 1690 ~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~ 1769 (1807)
+..+..++.++.....++...+..+..++..++..+......+..+..++..|..++..+..++.++.+.++.+.+++..
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555555555656566666667777777777777777777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2547 1770 QESELTELSKNIAELQKRIQSCINFIVDKS 1799 (1807)
Q Consensus 1770 ~e~~le~le~el~~L~~el~~l~~~I~~~~ 1799 (1807)
+.-++..++.++..|+++-..+.+..-.++
T Consensus 156 L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877788888888888877777766655544
No 334
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=96.42 E-value=4.2 Score=50.91 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHh-hhhccCCCHHHHHHHHHHHHHHHHhhhhH
Q psy2547 1500 AKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLA-VNKNIQSNPEQIRERANEINNVIKSLTDI 1578 (1807)
Q Consensus 1500 A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~v-l~~~i~~~~~~I~~l~~~i~~~~~~L~~~ 1578 (1807)
|..+++-+..-.+.+++..+-.+.+...--..+.......+...+-+... ..+..+.....--++..-|-++...+.+.
T Consensus 20 a~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~ls~~a~lT~LLG~l~qL~~~~ 99 (593)
T PRK15374 20 AEAAFEGVRKNTDFLKAADKAFKDVVATKAGDLKAGTKSGESAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDV 99 (593)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHHhhhhhhhccCCccchhhccCccCCCccccccccccchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1579 DTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDA 1658 (1807)
Q Consensus 1579 ~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~ 1658 (1807)
. .++|..++..-....+.......++.+.++.+..+.+.+.+.+++....+...++.++.++..+..+
T Consensus 100 S------------l~~l~s~l~~~na~~~ga~~~~~~lS~~ledaL~aaq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~l 167 (593)
T PRK15374 100 S------------LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAAEKKLTQA 167 (593)
T ss_pred H------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q psy2547 1659 QQKSNETN---VKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETD-----NKLLSKAE 1730 (1807)
Q Consensus 1659 e~~l~~~e---~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~-----~~l~~~~~ 1730 (1807)
+.++.... -.+.+.+..+...+..+.......+........++..+..-.+.+........... .++....+
T Consensus 168 q~~a~~~~P~sp~l~~a~~av~~a~~~a~~a~~~~~~~v~a~~~a~~~a~~ka~~~i~slt~~Q~~~~~~~~i~~~~~~~ 247 (593)
T PRK15374 168 QNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGTANAASQNQVSQGEQ 247 (593)
T ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccHHhhhhhhhhHHHHHHhhh
Q ss_pred HhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1731 SSGLKRARGQMLLNKASQL-SVNTTAKLKQLNETEAMFNSQ-ESELTELSKNIAELQKRIQSCIN 1793 (1807)
Q Consensus 1731 ~l~~~~~r~~~l~~~a~~l-~~~~~~~~~~l~~Le~~i~~~-e~~le~le~el~~L~~el~~l~~ 1793 (1807)
+-......+..|...+..+ .+...+.++...++.+++.+. ++++++..+|.++..++.+++.+
T Consensus 248 ~~l~~~a~LT~LmA~l~eLi~~~s~e~lk~~~el~~klsea~~kd~ekKA~Eyee~vrKAEE~qK 312 (593)
T PRK15374 248 DNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQEETRKAEETNR 312 (593)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 335
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=96.39 E-value=4.5 Score=50.92 Aligned_cols=60 Identities=8% Similarity=0.071 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2547 1689 SAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQ 1748 (1807)
Q Consensus 1689 ~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~ 1748 (1807)
++.++..++..+..++.....+.+.|..+++..++..+....++..+..++..|++++..
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444433
No 336
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=96.39 E-value=0.65 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1762 ETEAMFNSQESELTELSKNIAEL 1784 (1807)
Q Consensus 1762 ~Le~~i~~~e~~le~le~el~~L 1784 (1807)
.|..++..++..+..+..+++..
T Consensus 167 sL~~e~~~~~~di~~Li~~m~~s 189 (201)
T PF11172_consen 167 SLQGEFSSIESDISQLIKEMERS 189 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 337
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=96.38 E-value=0.7 Score=53.70 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1697 EKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTE 1776 (1807)
Q Consensus 1697 ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~ 1776 (1807)
+..+..++...++.+..+...-+.++.+++.++.+++..+.|++.|+.-.=.+..+.+....+|+.+=..+-..-+-++-
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444445555555555555555566666666666666666665544455555555554444443333333333333
Q ss_pred HHHHH
Q psy2547 1777 LSKNI 1781 (1807)
Q Consensus 1777 le~el 1781 (1807)
++.++
T Consensus 251 Le~ql 255 (267)
T PF10234_consen 251 LEHQL 255 (267)
T ss_pred HHHHH
Confidence 33333
No 338
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=96.37 E-value=1.9 Score=50.85 Aligned_cols=15 Identities=7% Similarity=0.022 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy2547 1749 LSVNTTAKLKQLNET 1763 (1807)
Q Consensus 1749 l~~~~~~~~~~l~~L 1763 (1807)
+..++......++++
T Consensus 205 y~~~m~~~~~~~Q~l 219 (258)
T cd07655 205 YMEDMEQVFDKCQEF 219 (258)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 339
>KOG0163|consensus
Probab=96.36 E-value=5.1 Score=51.23 Aligned_cols=12 Identities=8% Similarity=0.415 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q psy2547 1521 TSNITKQLDEFL 1532 (1807)
Q Consensus 1521 ~~~l~~~lk~~l 1532 (1807)
+-+++..+++.|
T Consensus 776 m~~lv~kVn~WL 787 (1259)
T KOG0163|consen 776 MLELVAKVNKWL 787 (1259)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 340
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.35 E-value=3.2 Score=48.75 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1748 QLSVNTTAKLKQLNETEAM-FNSQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1748 ~l~~~~~~~~~~l~~Le~~-i~~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
.+.+.+...+..+++++.. +..+..-|..+..-.......|....+.|.
T Consensus 200 ~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~i~~cl~~i~ 249 (253)
T cd07676 200 HYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPIIGKCLDGIT 249 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456666666666666542 233333333333333333344444444443
No 341
>KOG3647|consensus
Probab=96.34 E-value=1 Score=50.63 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1661 KSNETNVKVKLLQERLK 1677 (1807)
Q Consensus 1661 ~l~~~e~~l~~l~~~le 1677 (1807)
+|+++......|..+|+
T Consensus 127 ~Lnnvasdea~L~~Kie 143 (338)
T KOG3647|consen 127 QLNNVASDEAALGSKIE 143 (338)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 33333333333333333
No 342
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=96.33 E-value=0.2 Score=58.39 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2547 1646 KDLSQITNDLDDAQQKSN 1663 (1807)
Q Consensus 1646 ~~l~~ie~~l~~~e~~l~ 1663 (1807)
.+|.+++.+...++..|.
T Consensus 12 ~rL~q~eee~~~a~~~L~ 29 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALE 29 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 343
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.30 E-value=1.1 Score=49.59 Aligned_cols=19 Identities=16% Similarity=0.136 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2547 1612 TVQKIVDVLTEARTAQDMA 1630 (1807)
Q Consensus 1612 ~l~~l~~~L~~a~~~~~~a 1630 (1807)
+|-.++.+|.++...++..
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~ 50 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNK 50 (202)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333
No 344
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=96.25 E-value=0.2 Score=61.19 Aligned_cols=38 Identities=8% Similarity=0.192 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1690 AMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLS 1727 (1807)
Q Consensus 1690 ~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~ 1727 (1807)
+.+++++.+.+...+.+...++.++.+++++++.++++
T Consensus 282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444443
No 345
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=96.25 E-value=3.6 Score=50.94 Aligned_cols=16 Identities=6% Similarity=0.216 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhhhc
Q psy2547 1787 RIQSCINFIVDKSNNY 1802 (1807)
Q Consensus 1787 el~~l~~~I~~~~~~Y 1802 (1807)
...++...|.+-..||
T Consensus 317 ~y~el~~nl~eG~kFY 332 (353)
T cd09236 317 KYKEIVSNLDEGRKFY 332 (353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 346
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=96.22 E-value=3.8 Score=50.33 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy2547 1696 EEKNLEKEVALAQKQASGLRSRYQE-----TDNKLLSKAESSGLKRARGQMLLNKASQL----SVNTTAKLKQLNETEAM 1766 (1807)
Q Consensus 1696 ~ae~a~~~a~~ae~~l~el~~~l~~-----~~~~l~~~~~~l~~~~~r~~~l~~~a~~l----~~~~~~~~~~l~~Le~~ 1766 (1807)
+.+.+..++++|+..++.|+..+.. ...+++...+.+..+..+++.+++-+... ++-.+..+..+=+-...
T Consensus 218 ~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqf 297 (426)
T smart00806 218 DSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQF 297 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433332 12233333334444444444444443322 11222222222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1767 FNSQESELTELSKNIAELQKRIQSCINF 1794 (1807)
Q Consensus 1767 i~~~e~~le~le~el~~L~~el~~l~~~ 1794 (1807)
+.-.+.-+.++.++|+++.....-+...
T Consensus 298 L~lQedL~~DL~dDL~ka~eTf~lVeq~ 325 (426)
T smart00806 298 LTLQEDLIADLKEDLEKAEETFDLVEQC 325 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555554444433
No 347
>PHA03246 large tegument protein UL36; Provisional
Probab=96.18 E-value=13 Score=53.95 Aligned_cols=54 Identities=19% Similarity=0.299 Sum_probs=30.2
Q ss_pred cccccCCCCcceeEEEeccc--eeEEEEEEEEEc---CCCCCcEEEEEecCCCCCccchhhhH
Q psy2547 115 SWWQSENGVENVTIQLDMEA--EFHFTHLIIYFK---TFRPAAMLIERSHDFGKTWQVYRYFA 172 (1807)
Q Consensus 115 ~wwqs~~~~~~v~i~l~l~~--~f~~~~~~~~f~---s~rP~~~~iers~d~g~~w~~~qy~a 172 (1807)
..|.+....-.+=||++--. .|--...+.-|. +.+=..-+|+|=.. + ..|+|.+
T Consensus 198 ~~w~~Kr~~sY~LITVGalg~avyr~gD~~YIFDPHg~~~~~qA~V~r~~~-~---dVY~yLt 256 (3095)
T PHA03246 198 RVWKQKRGDIYCLIVIGVLGIGVYRSEDGIYIFDPHGHGHIGQACIVRVSE-G---YFYQYLT 256 (3095)
T ss_pred HHHhccCCCeEEEEEEccceEEEEEcCCeeEEeCCCCCCCCCccEEEEecc-c---cHHHHHH
Confidence 67888766666666665432 455556666772 44444445555333 1 1677754
No 348
>KOG3958|consensus
Probab=96.16 E-value=3.5 Score=47.33 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q psy2547 1614 QKIVDVLTEARTA 1626 (1807)
Q Consensus 1614 ~~l~~~L~~a~~~ 1626 (1807)
+.++++|+....+
T Consensus 246 d~vEqRL~s~lgK 258 (371)
T KOG3958|consen 246 DQVEQRLQSVLGK 258 (371)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 349
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=96.16 E-value=1.3 Score=55.67 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHH
Q psy2547 1440 EKESKAEELRKHM 1452 (1807)
Q Consensus 1440 e~~~~~eeL~~~~ 1452 (1807)
.+..++..|+.++
T Consensus 91 s~~~kl~RL~~Ev 103 (388)
T PF04912_consen 91 SPEQKLQRLRREV 103 (388)
T ss_pred CHHHHHHHHHHHH
Confidence 3444444444433
No 350
>smart00051 DSL delta serrate ligand.
Probab=96.14 E-value=0.0049 Score=55.35 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=19.0
Q ss_pred CCCccccCCceEeccCCccccCC
Q psy2547 1136 ATSQCHQNNGTCVCHQGIGGVRC 1158 (1807)
Q Consensus 1136 ~~~~C~~~tG~C~C~~g~~G~~C 1158 (1807)
....||+ +|.|.|.|||+|..|
T Consensus 42 ~~~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 42 GHYTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred CCccCCc-CCCEecCCCCcCCCC
Confidence 3568986 799999999999887
No 351
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=96.14 E-value=6.8 Score=50.52 Aligned_cols=7 Identities=14% Similarity=0.444 Sum_probs=3.1
Q ss_pred hHHHHHH
Q psy2547 1539 LADIRNI 1545 (1807)
Q Consensus 1539 ~~~i~~l 1545 (1807)
|++|+.+
T Consensus 125 ~~dv~rl 131 (473)
T PF14643_consen 125 PPDVERL 131 (473)
T ss_pred cHHHHHH
Confidence 4444443
No 352
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=96.11 E-value=3.8 Score=47.35 Aligned_cols=13 Identities=8% Similarity=0.286 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy2547 1519 ASTSNITKQLDEF 1531 (1807)
Q Consensus 1519 ~~~~~l~~~lk~~ 1531 (1807)
..-+++...+.+|
T Consensus 50 ~~rkela~~~~ef 62 (234)
T cd07664 50 CHRKELSANTAAF 62 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 353
>PF14992 TMCO5: TMCO5 family
Probab=96.11 E-value=0.18 Score=58.22 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q psy2547 1595 LKRKANLTKAGADSTKNTVQKI 1616 (1807)
Q Consensus 1595 L~~~a~~a~~ea~~l~~~l~~l 1616 (1807)
+++++..++..+..++.++...
T Consensus 23 lL~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 23 LLQKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444443
No 354
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=96.10 E-value=0.29 Score=56.97 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1616 IVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQK 1661 (1807)
Q Consensus 1616 l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~ 1661 (1807)
+...|...+.....++.+|......+..+..++..++.+...++.+
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444333333333344443333444444333333333333333
No 355
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=96.10 E-value=1 Score=46.39 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1693 VENEEKNLEKEVALAQKQASGLRSRYQ 1719 (1807)
Q Consensus 1693 a~~~ae~a~~~a~~ae~~l~el~~~l~ 1719 (1807)
+..++.-+...-...++++++..+.+.
T Consensus 96 vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 96 VNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333433333333
No 356
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=96.08 E-value=8.1 Score=50.85 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=12.5
Q ss_pred HHHHhhHhhhhhHHHHHHHHHHHH
Q psy2547 1430 YAETSKKLINEKESKAEELRKHMI 1453 (1807)
Q Consensus 1430 ~a~~l~~~i~e~~~~~eeL~~~~~ 1453 (1807)
+-++|..+++.++.++.+++.++.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~ 103 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIE 103 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555543
No 357
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=96.07 E-value=5.6 Score=48.96 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHH
Q psy2547 1556 SNPEQIRERANEI 1568 (1807)
Q Consensus 1556 ~~~~~I~~l~~~i 1568 (1807)
.+|..|.+....|
T Consensus 53 ~lP~sl~~~~~~i 65 (339)
T cd09235 53 TVPQSLLEKSRTV 65 (339)
T ss_pred CCCHHHHHHHHHH
Confidence 3455555555554
No 358
>KOG0810|consensus
Probab=96.07 E-value=1.6 Score=51.98 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH
Q psy2547 1559 EQIRERANEINNVIKSLTDIDTILT 1583 (1807)
Q Consensus 1559 ~~I~~l~~~i~~~~~~L~~~~~~l~ 1583 (1807)
..++....++.+....++.++..+.
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~ 57 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVE 57 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444443333
No 359
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=96.04 E-value=1.1 Score=50.58 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy2547 1781 IAELQKRIQS 1790 (1807)
Q Consensus 1781 l~~L~~el~~ 1790 (1807)
+..+......
T Consensus 188 l~~l~~~~~~ 197 (213)
T cd00176 188 LEELNERWEE 197 (213)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 360
>KOG4687|consensus
Probab=96.03 E-value=3.6 Score=46.41 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1637 AKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKS 1678 (1807)
Q Consensus 1637 a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~ 1678 (1807)
+-..|.+.+.+-.++..+.+.+..+++++....+-+++.+..
T Consensus 88 Laa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq 129 (389)
T KOG4687|consen 88 LAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQ 129 (389)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 334444444444445555555555555555555444444433
No 361
>PF15294 Leu_zip: Leucine zipper
Probab=96.03 E-value=2.4 Score=49.39 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=3.7
Q ss_pred HhhhhHHHHH
Q psy2547 1573 KSLTDIDTIL 1582 (1807)
Q Consensus 1573 ~~L~~~~~~l 1582 (1807)
...+++..++
T Consensus 30 ~T~~EV~~~l 39 (278)
T PF15294_consen 30 YTSDEVTEML 39 (278)
T ss_pred hhHHHHHHHH
Confidence 3333333333
No 362
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=95.99 E-value=4.7 Score=47.41 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH
Q psy2547 1559 EQIRERANEINNVIKSLTDIDTILT 1583 (1807)
Q Consensus 1559 ~~I~~l~~~i~~~~~~L~~~~~~l~ 1583 (1807)
++++.+...+.+-...++++...+.
T Consensus 5 d~~~~l~~~~~~g~~~~~~l~~f~k 29 (251)
T cd07653 5 DQFDNLEKHTQKGIDFLERYGKFVK 29 (251)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555555544443
No 363
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.93 E-value=0.095 Score=58.97 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1633 AIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERL 1676 (1807)
Q Consensus 1633 ~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~l 1676 (1807)
.|..+..++..++..+......+..++..+..++.++.++...|
T Consensus 96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 364
>KOG4286|consensus
Probab=95.93 E-value=8.3 Score=49.72 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1660 QKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQ 1708 (1807)
Q Consensus 1660 ~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae 1708 (1807)
++.+.+....++|..+....++.++..-+++.+++..++++...+.+++
T Consensus 199 kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae 247 (966)
T KOG4286|consen 199 KQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAE 247 (966)
T ss_pred HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333334444444444444444444444444444444444444433333
No 365
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=95.89 E-value=1.7 Score=50.59 Aligned_cols=86 Identities=12% Similarity=0.075 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1689 SAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFN 1768 (1807)
Q Consensus 1689 ~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~ 1768 (1807)
.+.+.+..++.+...-..++.+++..+.+++..+++|+.+..--=+-.++.++++.+++.+-..+-.+.+.+.-|+.+++
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle 256 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLE 256 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333444444444444444445555555555555555544444445666777777777777777777777777777776
Q ss_pred HHHHHH
Q psy2547 1769 SQESEL 1774 (1807)
Q Consensus 1769 ~~e~~l 1774 (1807)
...+.-
T Consensus 257 ~~~~~e 262 (267)
T PF10234_consen 257 EYNRRE 262 (267)
T ss_pred HHHHHH
Confidence 665543
No 366
>KOG0163|consensus
Probab=95.89 E-value=8.3 Score=49.48 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy2547 1637 AKDDISAARKDL 1648 (1807)
Q Consensus 1637 a~~~i~~~~~~l 1648 (1807)
+..+|+++-++|
T Consensus 873 ~~~~id~lv~~I 884 (1259)
T KOG0163|consen 873 TYRQIDDLVKKI 884 (1259)
T ss_pred HHHHHHHHHHHh
Confidence 333344333333
No 367
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=95.88 E-value=4.9 Score=46.69 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHHHHHhhhhHH
Q psy2547 1557 NPEQIRERANEINNVIKSLTDID 1579 (1807)
Q Consensus 1557 ~~~~I~~l~~~i~~~~~~L~~~~ 1579 (1807)
..+.+.+..+.+..+...|..+.
T Consensus 22 ~D~~F~~~~~~~~~le~~Lk~l~ 44 (236)
T PF09325_consen 22 PDEWFEEIKDYVDKLEEQLKKLY 44 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444433
No 368
>PHA03332 membrane glycoprotein; Provisional
Probab=95.86 E-value=0.51 Score=62.06 Aligned_cols=159 Identities=11% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1619 VLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEK 1698 (1807)
Q Consensus 1619 ~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae 1698 (1807)
+|--+..++..+..+|.++.+.++-...-++++-+..+++.+ +...|..+.++++.++..+.++.+.+..+..++
T Consensus 854 AIGvATAAqiTA~vAL~~A~QAL~va~~~~~~llqnaaaia~----mksaIg~tNaAV~~lsDai~klGnti~kisatl- 928 (1328)
T PHA03332 854 AIGLSAAAFTMASAALNAATQALAVATLYVNQLLQATAATAE----MASKIGGLNARVDKTSDVITKLGDTIAKISATL- 928 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1699 NLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELS 1778 (1807)
Q Consensus 1699 ~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le 1778 (1807)
++.++++..++..+++++.. ++.....+++.|.++.+++..++.+.+.+.. +...+-
T Consensus 929 ---------~~nI~avNgRIs~Led~VN~---r~~~v~~~intLA~ql~~~~~~~N~~ie~~~-----------aaalyY 985 (1328)
T PHA03332 929 ---------DNNIRAVNGRVSDLEDQVNL---RFLAVATNFNTLATQLKELGTTTNERIEEVM-----------AAALYY 985 (1328)
T ss_pred ---------HhhHHHhcccHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-----------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCC
Q psy2547 1779 KNIAELQKRIQSCINFIVDKSNNYKNC 1805 (1807)
Q Consensus 1779 ~el~~L~~el~~l~~~I~~~~~~Y~tc 1805 (1807)
++|+.|..++..-..+|..+++-|+||
T Consensus 986 QQlnsltnqv~~saskL~~qv~myrTC 1012 (1328)
T PHA03332 986 QQLNSLTNQVTQSASKLGYQVGMYRTC 1012 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
No 369
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=95.76 E-value=1.6 Score=45.17 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1696 EEKNLEKEVALAQKQASGLRSR 1717 (1807)
Q Consensus 1696 ~ae~a~~~a~~ae~~l~el~~~ 1717 (1807)
+++.+..+++.+..+++-+...
T Consensus 85 Ev~~vRkkID~vNreLkpl~~~ 106 (159)
T PF04949_consen 85 EVEMVRKKIDSVNRELKPLGQS 106 (159)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 3333334444444444433333
No 370
>KOG1103|consensus
Probab=95.73 E-value=5.6 Score=46.28 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1763 TEAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1763 Le~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
+++..+-+..+++.+.+-+..|+.....
T Consensus 264 ee~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 264 EEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3333333344444444444444444333
No 371
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=95.72 E-value=1.4 Score=49.71 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHHHH
Q psy2547 1557 NPEQIRERANEINNVI 1572 (1807)
Q Consensus 1557 ~~~~I~~l~~~i~~~~ 1572 (1807)
+...++.+..++..+.
T Consensus 31 d~~~~~~~l~~~~~~~ 46 (213)
T cd00176 31 DLESVEALLKKHEALE 46 (213)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 372
>smart00051 DSL delta serrate ligand.
Probab=95.66 E-value=0.0098 Score=53.41 Aligned_cols=49 Identities=20% Similarity=0.491 Sum_probs=33.3
Q ss_pred CCCCC-cccCCCCCCcccCCCCCCcCCCCCCCCCCCCCcCCCCccccCCCcccccc
Q psy2547 1006 GDHCQ-VCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSC 1060 (1807)
Q Consensus 1006 G~~C~-~C~~G~~G~~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C 1060 (1807)
|.++. .|.++|||..|...|.+ .. ....+..||+ .|.|.|+|||+|..|
T Consensus 14 ~~~~rv~C~~~~yG~~C~~~C~~---~~--d~~~~~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 14 EYQIRVTCDENYYGEGCNKFCRP---RD--DFFGHYTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred EEEEEeeCCCCCcCCccCCEeCc---Cc--cccCCccCCc-CCCEecCCCCcCCCC
Confidence 34443 57788888877766642 11 0112257987 699999999999987
No 373
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=95.64 E-value=8 Score=47.38 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1467 TSKKLINEKEAKAEEVFRGITTAKQES 1493 (1807)
Q Consensus 1467 ~a~~~l~~~~~~~~~l~~~~~~~~~~~ 1493 (1807)
+....++++.|....++..+..++...
T Consensus 157 Els~l~Qe~~WQq~Tlld~i~q~Q~dn 183 (673)
T COG4192 157 ELSPLRQELQWQQETLLDGITQAQVDN 183 (673)
T ss_pred hhHHHHHHHHHHHHHHhhhHhhhCccH
Confidence 455677778888887777776654443
No 374
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=95.63 E-value=16 Score=51.11 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy2547 1561 IRERANEI 1568 (1807)
Q Consensus 1561 I~~l~~~i 1568 (1807)
+.+....|
T Consensus 812 ~~~~~~~i 819 (1463)
T COG5022 812 YRSYLACI 819 (1463)
T ss_pred HHHHHHHH
Confidence 33333333
No 375
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.62 E-value=0.45 Score=64.74 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy2547 1610 KNTVQKIVDVLTE 1622 (1807)
Q Consensus 1610 ~~~l~~l~~~L~~ 1622 (1807)
.+++.+++++|.+
T Consensus 273 ~~qL~~l~~~L~~ 285 (726)
T PRK09841 273 QRQLPEVRSELDQ 285 (726)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 376
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=95.60 E-value=8 Score=47.12 Aligned_cols=50 Identities=10% Similarity=0.231 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1748 QLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1748 ~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~ 1797 (1807)
.++...+.....|++.+.-.++..++..+.+++|..|+.++......+..
T Consensus 332 Tlk~t~~~vv~~ieet~~i~ee~r~kr~~~~~~L~~l~~~~k~~l~~~~~ 381 (386)
T COG3853 332 TLKKTQQSVVAAIEETSQIQEEGRKKRADTIRELDKLEEEIKKKLILLKQ 381 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444445555555555555556666666666666666665554443
No 377
>KOG4807|consensus
Probab=95.60 E-value=6.9 Score=46.36 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2547 1737 ARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTE----LSKNIAELQKRIQSCINFIVDKSNN 1801 (1807)
Q Consensus 1737 ~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~----le~el~~L~~el~~l~~~I~~~~~~ 1801 (1807)
.+++-|+.++..|+.+++-.++..+-...++++.-.+|.- ..-+|..|+.+++.....|.+|.-.
T Consensus 519 sEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALgEKspd 587 (593)
T KOG4807|consen 519 SEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALGEKSPD 587 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhcccCCc
Confidence 3444455555555555555555544445555554444432 3456888888888888888777543
No 378
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=95.60 E-value=9.7 Score=48.06 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1592 ANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMA 1630 (1807)
Q Consensus 1592 a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a 1630 (1807)
+.+|..+...+..++.....+-+.+...|..++...+..
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l 460 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESL 460 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433333
No 379
>KOG4403|consensus
Probab=95.58 E-value=1.3 Score=53.01 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy2547 1651 ITNDLDDAQQ 1660 (1807)
Q Consensus 1651 ie~~l~~~e~ 1660 (1807)
+...++.+|.
T Consensus 314 lR~~L~kAEk 323 (575)
T KOG4403|consen 314 LRVALEKAEK 323 (575)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 380
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=95.57 E-value=1.5 Score=52.04 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1705 ALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAEL 1784 (1807)
Q Consensus 1705 ~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L 1784 (1807)
+++++.+..|...+.+.+-..++.-.-+....-|++.+.-+-+....+.....+.+++|..+.+++-..++.-...+..|
T Consensus 294 EelRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~versavs~asL 373 (558)
T PF15358_consen 294 EELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERSAVSVASL 373 (558)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhHHHHH
Confidence 44444444444444444433333333344444444444433333333333333333444333333333333333333333
Q ss_pred HHH
Q psy2547 1785 QKR 1787 (1807)
Q Consensus 1785 ~~e 1787 (1807)
..+
T Consensus 374 rse 376 (558)
T PF15358_consen 374 RSE 376 (558)
T ss_pred HHH
Confidence 333
No 381
>KOG0040|consensus
Probab=95.56 E-value=17 Score=50.49 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q psy2547 1372 RLNEKITS 1379 (1807)
Q Consensus 1372 ~L~~kL~~ 1379 (1807)
+++.++..
T Consensus 437 ev~ekl~~ 444 (2399)
T KOG0040|consen 437 EVREKLEI 444 (2399)
T ss_pred HHHHHHHH
Confidence 33333333
No 382
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.54 E-value=0.48 Score=48.46 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1765 AMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1765 ~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
.+++.+..-+=++.+++++|+..|.++++-+..+
T Consensus 82 ~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 82 QRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444333
No 383
>KOG2196|consensus
Probab=95.52 E-value=1.7 Score=48.68 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2547 1659 QQKSNETNVKVKLLQERL 1676 (1807)
Q Consensus 1659 e~~l~~~e~~l~~l~~~l 1676 (1807)
..+.++++.-|..+++++
T Consensus 140 ~sqQ~ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 140 LSQQQELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 384
>PTZ00464 SNF-7-like protein; Provisional
Probab=95.49 E-value=1.3 Score=50.05 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy2547 1776 ELSKNIAELQKRI 1788 (1807)
Q Consensus 1776 ~le~el~~L~~el 1788 (1807)
++++||++|+.++
T Consensus 161 ELe~ELe~Le~e~ 173 (211)
T PTZ00464 161 EMLGELDALDFDM 173 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455554443
No 385
>COG5283 Phage-related tail protein [Function unknown]
Probab=95.49 E-value=17 Score=50.06 Aligned_cols=502 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q psy2547 1245 TTIDDMKKQIMNNEDPNGVGKTLGNTTQRINLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTS 1324 (1807)
Q Consensus 1245 ~~l~~l~~~l~~~~~l~~~e~~l~~~~~~~~~~~~~le~L~~el~~l~~~~~~l~~~~~~l~~~~~~~a~~~~~~a~~~~ 1324 (1807)
..++.|.+.| ...++..+.+..++....+.+..-..++..|.+.++..+.-..++++. ..+.-+..
T Consensus 22 ~~in~L~ssi------~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe--------~~evn~at 87 (1213)
T COG5283 22 KNINVLKSSI------KDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQE--------VKEVNRAT 87 (1213)
T ss_pred HHHHHHHHHH------HhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhcccchhHHHhhccCCCCCCCCCC
Q psy2547 1325 LKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLCG 1404 (1807)
Q Consensus 1325 ~~a~~~~~~~~~~i~~a~~~~~~a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~~l~~~L~~l~~~icg~~~~~C~~~Cg 1404 (1807)
...+....+...++.+++..+..+...+......+..++.+ +..+..++..+.+-+.......
T Consensus 88 ~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~----iq~~~~~is~t~k~maaQ~~l~------------- 150 (1213)
T COG5283 88 QASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKE----IQRLQYAISTLNKSMAAQARLL------------- 150 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH----HHHHHHHHHhhhhhhHHHHHHH-------------
Q ss_pred CCCCCCCCCcccCCchhHHHHHHHHHHHHhhHhhhhhH----HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy2547 1405 GAGCGKCGGMWCSNGTLSESNSAKDYAETSKKLINEKE----SKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAE 1480 (1807)
Q Consensus 1405 g~~C~~Cgg~~C~~~a~~~a~~A~~~a~~l~~~i~e~~----~~~eeL~~~~~~~~~~~~a~~~ae~a~~~l~~~~~~~~ 1480 (1807)
+.+.+.-......+..+. ...+.+.+++.....-..++. ..+.+.-..+.+...
T Consensus 151 --------------------eqt~n~~g~a~~~~~gl~esf~~q~~aln~q~~~t~k~~~~~~--~~l~e~qq~~~q~~~ 208 (1213)
T COG5283 151 --------------------EQTGNKFGTADAKVVGLRESFGRQTEALNKQLERTKKVADALT--YVLDEAQQKLSQALS 208 (1213)
T ss_pred --------------------HHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHhhhhhhhhhh--hhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hCCCCChHHHHHHh
Q psy2547 1481 EVFRGITTAKQESHAANILAK----------EAYDHAASVRNKTAAYVASTSNITKQLDEFL----NAPGATLADIRNIS 1546 (1807)
Q Consensus 1481 ~l~~~~~~~~~~~~~a~~~A~----------~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l----~~~~~~~~~i~~la 1546 (1807)
.+++.+.+.+.+........- .++................+-.....+.+-+ .......+.+-++.
T Consensus 209 a~~~~L~~s~~q~~~s~~qlsk~~e~~~~~aG~~~~~~a~~~~s~a~i~aAv~~~~~mn~~l~~~~kq~k~~rdn~~k~t 288 (1213)
T COG5283 209 ARLERLQESRTQMSQSSGQLGKRLETDKAGAGALGLLGAALAGSFAAIGAAVRRTAQMNGELMDKTKQVKGARDNLGKVT 288 (1213)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHhhhcchhHHHHHHHHHHHHhhhhhhhHHHhhhhhcchHHHH
Q ss_pred HHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHHH----------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2547 1547 GLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTI----------------LTETAGDLAKANDLKRKANLTKAGADSTK 1610 (1807)
Q Consensus 1547 ~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~----------------l~~~~~~l~~a~~L~~~a~~a~~ea~~l~ 1610 (1807)
....++ ...|..+.+++......|..+..+ ..........+.-....+..-..-+.++.
T Consensus 289 ~q~~~m-----~~a~~~ta~~~kd~~~~lskAaai~~~~~~Gva~g~~~~~~~ak~~l~~~~~~aa~~ataF~~~adel~ 363 (1213)
T COG5283 289 SQGEEM-----SDAIQETAEHIKDSGRELSKAAAIGAAAAMGVAAGKFPTGQEAKPTLKEMARVAALTATAFNLPADELN 363 (1213)
T ss_pred HHHHHH-----HHHHHHHHHHcchhhhhHHHHHHHHHHHhcccccccccchhhhhHHHHHHHHHHHHHHHhccChhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy2547 1611 NTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKL-LQERLKSIQAGFLQNGRS 1689 (1807)
Q Consensus 1611 ~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~-l~~~le~lk~~l~~~~~~ 1689 (1807)
..+..+-..+...-.......+.|.-+...+......+..+.+..-.+-.....+..+... +....-.+....+..-..
T Consensus 364 ~~l~k~a~~~k~p~~~~~~ggs~L~~~~~~~~~~gG~lk~vs~~ag~~a~~t~~lS~~~aa~l~~~F~~lgas~e~ag~a 443 (1213)
T COG5283 364 DNLAKWAGELKFPASDAISGGSLLAMLTDLLQGKGGDLKKVSDAAGAGAVETLGLSADAAANLATTFGTLGASAERAGDT 443 (1213)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhccccccccCcchHHHHHHhhccchhhcccchHHHHHHHHHHhhhHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy2547 1690 AMDVENEEKNLEKEVALAQKQASGLR----SRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKL-KQLNETE 1764 (1807)
Q Consensus 1690 ~~~a~~~ae~a~~~a~~ae~~l~el~----~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~-~~l~~Le 1764 (1807)
+..+...+-.+.............+. ......-......+..+.....+-.-....+..+......++ ..++.+.
T Consensus 444 ~~~a~~~~l~~vk~~t~~~~~gv~l~~~~~~~~~k~m~~~~~~~~~lim~~~k~Lp~~~~~~~mad~Fgk~lge~~kkla 523 (1213)
T COG5283 444 LTKALLRLLDIVKKNTDGFALGVTLDYLTGAEAQKLMVTFAESAAMLIMLANKGLPVEDSAGTMADAFGKKLGEALKKLA 523 (1213)
T ss_pred HHHhhhhhhhhHhhhhhHHHHHhhHhhhcHHHHHhhhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhcCC
Q psy2547 1765 AMFNSQESELTELSKNIAE--LQKRIQSCINFIVDKSNNYKN 1804 (1807)
Q Consensus 1765 ~~i~~~e~~le~le~el~~--L~~el~~l~~~I~~~~~~Y~t 1804 (1807)
+.+.++.+.+..-.-++.. .+.+.......+...-..|.+
T Consensus 524 ~~iaE~~~~ladn~~k~~~~s~~ee~~~~~k~~~~iw~~~ks 565 (1213)
T COG5283 524 DAIAELFQSLADNRGKIANGSMEEELLTLYKATAGIWQIYKS 565 (1213)
T ss_pred hhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHhc
No 386
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=95.47 E-value=17 Score=50.15 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1478 KAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTAAY 1517 (1807)
Q Consensus 1478 ~~~~l~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e~~ 1517 (1807)
.++++...++.++....+++..+.++.+....++..+..+
T Consensus 247 ~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~ 286 (806)
T PF05478_consen 247 AMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNT 286 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444433
No 387
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=95.45 E-value=0.43 Score=54.24 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1697 EKNLEKEVALAQKQASG 1713 (1807)
Q Consensus 1697 ae~a~~~a~~ae~~l~e 1713 (1807)
+++|..++++|++.++.
T Consensus 119 LKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 388
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=95.45 E-value=8 Score=46.13 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1761 NETEAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1761 ~~Le~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
.+|.++.+.+.++|+++.+++++++.++.-
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~v 381 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555555444443
No 389
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=95.41 E-value=5.1 Score=55.25 Aligned_cols=7 Identities=71% Similarity=1.991 Sum_probs=3.8
Q ss_pred CCCCCCc
Q psy2547 1408 CGKCGGM 1414 (1807)
Q Consensus 1408 C~~Cgg~ 1414 (1807)
|+.|||.
T Consensus 120 c~~CGg~ 126 (806)
T PF05478_consen 120 CGNCGGR 126 (806)
T ss_pred CCCcCCc
Confidence 3466664
No 390
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=95.41 E-value=0.65 Score=57.77 Aligned_cols=295 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhCCCCChHHHHHHhHHh-hhhccCCCHHHHHH
Q psy2547 1486 ITTAKQESHAANILAKEAYDHAASVRNKTAAYV-ASTSNITKQLDEFLNAPGATLADIRNISGLA-VNKNIQSNPEQIRE 1563 (1807)
Q Consensus 1486 ~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e~~~-~~~~~l~~~lk~~l~~~~~~~~~i~~la~~v-l~~~i~~~~~~I~~ 1563 (1807)
+.+.+...+.......+....+........... ..+.+.......-+..+.+.|+......... .....+....+|+.
T Consensus 76 ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~ 155 (424)
T PF03915_consen 76 LDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQS 155 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchHHHHHH
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1564 RANEINNVIKSLTDIDTILTETAGDL-AKANDLKRKANLTK--AGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDD 1640 (1807)
Q Consensus 1564 l~~~i~~~~~~L~~~~~~l~~~~~~l-~~a~~L~~~a~~a~--~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~ 1640 (1807)
+..+|.-+.....+....+...-..+ .++..++..+-.+. ..-.-+...-..+...-+.+.+.++.++..++++..+
T Consensus 156 LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkD 235 (424)
T PF03915_consen 156 LRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKD 235 (424)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1641 ISA-----ARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLR 1715 (1807)
Q Consensus 1641 i~~-----~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~ 1715 (1807)
+-. ..++++.+..++..+...|..++..+..++ -.+++.-+.=-+.+-+-++-+..-..-+..|++.++.+.
T Consensus 236 V~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k---p~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~ 312 (424)
T PF03915_consen 236 VVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK---PIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKAS 312 (424)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q psy2547 1716 SRYQETDNKLLSKAESSGLKRARGQ-----------------MLLNKASQLSVNTTAKLKQLNETEAMFNSQES--ELTE 1776 (1807)
Q Consensus 1716 ~~l~~~~~~l~~~~~~l~~~~~r~~-----------------~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~--~le~ 1776 (1807)
+-|..+++-.............+.- .+..+++.|.-+-+..++.|+..++.-++..+ +.++
T Consensus 313 etf~lveq~~~~Q~k~~~~~~~r~~~~~~~~~pg~~~~~~~~~VL~EV~aL~PDHE~RLeAIerAEKlRqkele~~~~~~ 392 (424)
T PF03915_consen 313 ETFALVEQCTEEQEKSPSRSRNRPVANLPIPEPGEDPHEARDQVLGEVRALQPDHESRLEAIERAEKLRQKELEYRRVDE 392 (424)
T ss_dssp HHHHHHHHHCT---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCccCCCCCCCCCChhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhccccH
Q ss_pred HHHHHHH
Q psy2547 1777 LSKNIAE 1783 (1807)
Q Consensus 1777 le~el~~ 1783 (1807)
+++||..
T Consensus 393 f~~EL~~ 399 (424)
T PF03915_consen 393 FQKELGN 399 (424)
T ss_dssp -------
T ss_pred HHHHHHH
No 391
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=95.39 E-value=6.2 Score=44.54 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2547 1738 RGQMLLNKASQLSVNTTAKLK 1758 (1807)
Q Consensus 1738 r~~~l~~~a~~l~~~~~~~~~ 1758 (1807)
.++...++.+.+..++-.+.+
T Consensus 278 e~k~fK~qlE~ladqLl~ks~ 298 (353)
T PF01540_consen 278 EMKKFKNQLENLADQLLEKSR 298 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444444443
No 392
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=95.38 E-value=1 Score=56.21 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy2547 1669 VKLLQERLKSI 1679 (1807)
Q Consensus 1669 l~~l~~~le~l 1679 (1807)
+.+|-.+|.++
T Consensus 66 i~~L~~~i~~i 76 (383)
T PF04100_consen 66 IQELFEKISEI 76 (383)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 393
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=95.37 E-value=0.71 Score=57.45 Aligned_cols=7 Identities=14% Similarity=0.050 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy2547 1713 GLRSRYQ 1719 (1807)
Q Consensus 1713 el~~~l~ 1719 (1807)
.|+++++
T Consensus 325 aLe~QIa 331 (434)
T PRK15178 325 VLEKQIG 331 (434)
T ss_pred HHHHHHH
Confidence 3333333
No 394
>KOG3647|consensus
Probab=95.36 E-value=4.7 Score=45.62 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2547 1719 QETDNKLLSKAESSGLKRARGQMLL 1743 (1807)
Q Consensus 1719 ~~~~~~l~~~~~~l~~~~~r~~~l~ 1743 (1807)
+.+..+++.++.+++..+.|++.|+
T Consensus 136 a~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 136 AALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444433
No 395
>PF14992 TMCO5: TMCO5 family
Probab=95.29 E-value=0.59 Score=54.18 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1740 QMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTE 1776 (1807)
Q Consensus 1740 ~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~ 1776 (1807)
.++.+.+.....++.+++++|++ ++++.-+++++..
T Consensus 143 ~~l~eDq~~~i~klkE~L~rmE~-ekE~~lLe~el~k 178 (280)
T PF14992_consen 143 HQLCEDQANEIKKLKEKLRRMEE-EKEMLLLEKELSK 178 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33333333333344444444443 3333334433333
No 396
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=95.25 E-value=10 Score=46.66 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1672 LQERLKSIQAGFLQNGR 1688 (1807)
Q Consensus 1672 l~~~le~lk~~l~~~~~ 1688 (1807)
+-.++++|+..++.++.
T Consensus 222 lltkVDDLQD~vE~LRk 238 (426)
T smart00806 222 LLTKVDDLQDIIEALRK 238 (426)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 397
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=95.25 E-value=11 Score=46.37 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1755 AKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINF 1794 (1807)
Q Consensus 1755 ~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~ 1794 (1807)
+.+-+|++.+......+++-...+.+-+++.++|+.+...
T Consensus 431 Ellvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 431 ELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455544444444444444555555555555555443
No 398
>KOG2220|consensus
Probab=95.25 E-value=5 Score=53.78 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1608 STKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISA 1643 (1807)
Q Consensus 1608 ~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~ 1643 (1807)
.+..++++...-++.+......++..++.-.+.++-
T Consensus 477 ~~~~e~~k~~~~l~~a~~~d~~~~~~~~~~~~~~~l 512 (714)
T KOG2220|consen 477 ALYEELEKLREVLEPAKAADVQLKKAFEAHKKNIRL 512 (714)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcchhh
Confidence 344445555555555555444444444443333333
No 399
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=95.22 E-value=1.3 Score=51.23 Aligned_cols=54 Identities=11% Similarity=0.252 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1642 SAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVEN 1695 (1807)
Q Consensus 1642 ~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~ 1695 (1807)
+...+++...+.+++..+.++...++.+.++..++.+++.++.+++.....+..
T Consensus 196 e~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 196 EEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444443333333333
No 400
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.19 E-value=3.6 Score=47.63 Aligned_cols=173 Identities=7% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1627 QDMAEVAIQTAKDD---ISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKE 1703 (1807)
Q Consensus 1627 ~~~a~~~l~~a~~~---i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~ 1703 (1807)
++.+.+.+..+... +.+-..+-.++...++.++..|..++.-+..+.++..++...+.+....+.....--.++..-
T Consensus 32 ~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~ 111 (243)
T cd07666 32 LSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADS 111 (243)
T ss_pred hhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1704 VALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAE 1783 (1807)
Q Consensus 1704 a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~ 1783 (1807)
+..+..-++.....+.+....+.+ .+.........+...++.+..+-..+..+++.+...+.....+-+.+..+|.+
T Consensus 112 L~~~a~~~d~~~~~~~~~~~~l~~---~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~ 188 (243)
T cd07666 112 LKGMASCIDRCCKATDKRMKGLSE---QLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEK 188 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q psy2547 1784 LQKRIQSCINFIVDKSNNY 1802 (1807)
Q Consensus 1784 L~~el~~l~~~I~~~~~~Y 1802 (1807)
++.+++...+.|....+++
T Consensus 189 ~e~kve~a~~~~k~e~~Rf 207 (243)
T cd07666 189 LEDKVECANNALKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 401
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=95.09 E-value=9.3 Score=44.82 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhhhHHHH
Q psy2547 1563 ERANEINNVIKSLTDIDTI 1581 (1807)
Q Consensus 1563 ~l~~~i~~~~~~L~~~~~~ 1581 (1807)
.+...+.+....++++...
T Consensus 9 ~~~kr~~~g~~~~~dl~~f 27 (258)
T cd07680 9 RTVKRIDDGHRLCNDLMNC 27 (258)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3333444444444444433
No 402
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=95.08 E-value=7.3 Score=52.84 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q psy2547 1557 NPEQIRERANEINNVIKSLT 1576 (1807)
Q Consensus 1557 ~~~~I~~l~~~i~~~~~~L~ 1576 (1807)
+.+.+.++++.|-++.-.|+
T Consensus 475 ~~~~l~~v~~~LW~lAl~iE 494 (851)
T TIGR02302 475 TDDALRDVADNLWSLALGIE 494 (851)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555544444
No 403
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=95.07 E-value=0.67 Score=52.72 Aligned_cols=107 Identities=11% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1641 ISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQE 1720 (1807)
Q Consensus 1641 i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~ 1720 (1807)
|++-+--|.-++.++++.+++|.+-+.+|.+|+.+|..+++.--+-+=...+|+-.+++|..++++|++.++.++..|.+
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2547 1721 TDNKLLSKAESSGLKRARGQMLLNKAS 1747 (1807)
Q Consensus 1721 ~~~~l~~~~~~l~~~~~r~~~l~~~a~ 1747 (1807)
..+-++..-..++....+++.|+..++
T Consensus 143 kDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 143 KDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred hhhhHHHHHhhhhhhHhHHHHHHHHHH
No 404
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=95.06 E-value=0.035 Score=65.31 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1634 IQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASG 1713 (1807)
Q Consensus 1634 l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~e 1713 (1807)
|-.+...+..-..+|..+.+++..+|...+.+...+..+..++.+++..+..+...+.++..+++.+...+..++..+..
T Consensus 16 ILslTss~s~s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~ 95 (326)
T PF04582_consen 16 ILSLTSSISTSPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSS 95 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1714 LRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQE 1771 (1807)
Q Consensus 1714 l~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e 1771 (1807)
+...+..+...+..-...+..++..+..+.-.+.+|+..+....-.|.+|+++++.+|
T Consensus 96 lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 96 LSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
No 405
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=95.05 E-value=4.4 Score=46.02 Aligned_cols=181 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy2547 1605 GADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNE-TNVKVKLLQERLKSIQAGF 1683 (1807)
Q Consensus 1605 ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~-~e~~l~~l~~~le~lk~~l 1683 (1807)
++.++...++.+...+.+..++++.+++++..+...-..++. +....++.-+.+ ..--+..+..-++.++..+
T Consensus 4 d~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkG------ka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l 77 (204)
T PF04740_consen 4 DVSELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKG------KAYDSIKNYFSEVHIPLLQGLILLLEEYQEAL 77 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy2547 1684 LQNGRSAMDVE--NEEKNLEKEVA-LAQKQASGLRSRYQETDNKLLSKAESSGLKRA----RGQMLLNKASQLSVNTTAK 1756 (1807)
Q Consensus 1684 ~~~~~~~~~a~--~~ae~a~~~a~-~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~----r~~~l~~~a~~l~~~~~~~ 1756 (1807)
...+.-..++. ..+.--+..++ +++..++.+.+.++.+...+......+..... ....+...++...++++++
T Consensus 78 ~~~~~~~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
T PF04740_consen 78 KFIKDFQSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQET 157 (204)
T ss_pred HhHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1757 LKQLNETEAMFNSQESELTELSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1757 ~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l 1791 (1807)
+++|.+...+-...-..++++.+.+...-.+|...
T Consensus 158 lekL~~fd~~~~~~~~~~~~~~~~l~~~l~~l~~~ 192 (204)
T PF04740_consen 158 LEKLRAFDQQSSSIFSEIEELLQALQSGLSQLQSM 192 (204)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
No 406
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=95.05 E-value=12 Score=50.91 Aligned_cols=295 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHH
Q psy2547 1500 AKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDID 1579 (1807)
Q Consensus 1500 A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~ 1579 (1807)
|..+.++=..+.-..+... .+-..++.|..-=...-.++..+-.+.-.+..++...+.+.+.++++.|-++.-.|++
T Consensus 388 ArAvieqRr~L~~~~~~~~-~v~~~L~al~~~Pe~~~~~~~~yL~Lr~a~~rL~~~~~~~~~~~v~~~LW~lAl~iEd-- 464 (820)
T PF13779_consen 388 ARAVIEQRRDLALDPENRP-RVAQALDALSHRPEDFFPDPGHYLGLRSARRRLERARTDEALREVADLLWDLALRIED-- 464 (820)
T ss_pred HHHHHHHHHHHHhCccccH-HHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy2547 1580 TILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTA-------KDDISAARKDLSQIT 1652 (1807)
Q Consensus 1580 ~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a-------~~~i~~~~~~l~~ie 1652 (1807)
..+..++..+..|++-+++|-+--..-+++++-++++++++++...++.+....-... ........++|+..-
T Consensus 465 G~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mm 544 (820)
T PF13779_consen 465 GDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMM 544 (820)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHH
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy2547 1653 NDLDDAQQK--SNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQET--------- 1721 (1807)
Q Consensus 1653 ~~l~~~e~~--l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~--------- 1721 (1807)
++++++-+. ..++.+.|++|++-++.++..-.+ .....+..+.++++.+-+.+=++-+++.-....+.
T Consensus 545 d~ie~la~~G~~~~A~q~L~qlq~mmenmq~~~~q-~~~~~~~~q~m~~L~dl~r~Qq~L~D~tfr~~q~q~~~q~~~q~ 623 (820)
T PF13779_consen 545 DRIEELARSGRMDEARQLLEQLQQMMENMQNAQPQ-QQQQQEMQQAMEELGDLLRRQQQLMDETFRQLQEQQNAQQGQQQ 623 (820)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCc
Q ss_pred --------------------------------HHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q psy2547 1722 --------------------------------DNKLLSKAESSGLKRARGQMLLNKASQ--------LSVNTTAKLKQLN 1761 (1807)
Q Consensus 1722 --------------------------------~~~l~~~~~~l~~~~~r~~~l~~~a~~--------l~~~~~~~~~~l~ 1761 (1807)
....+...+....++.++.++...+.. ....+.+..+.++
T Consensus 624 ~~~~~~~~g~~q~gq~~~q~~~~~~~~~~~~~~~~~~~l~~~Q~~l~~~L~~~~~~l~~~g~~~g~~~~~~l~~A~~aM~ 703 (820)
T PF13779_consen 624 GQQGQGQQGQGQPGQQQGQGQGQQQGQQGQGGQEQQQSLAERQQALRQELQRLQDELPGQGGEAGGQAPDALGEAEEAMR 703 (820)
T ss_pred ccccCCCCCcCCCCccccccccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccCcchhHHHHHHHHH
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1762 ETEAMFNSQE--SELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1762 ~Le~~i~~~e--~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
+.+..+.+.. ..++.-.+-|+.|.+=++++.+.+.+.
T Consensus 704 ~A~~aL~~g~~~~Av~~Q~~AleaLr~G~q~m~e~m~~~ 742 (820)
T PF13779_consen 704 DAEEALGQGDLDGAVDAQGRALEALREGAQQMAEAMQQQ 742 (820)
T ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=95.05 E-value=8.8 Score=44.32 Aligned_cols=218 Identities=9% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHhHHh--hhhccCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHH
Q psy2547 1542 IRNISGLA--VNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNT--VQKIV 1617 (1807)
Q Consensus 1542 i~~la~~v--l~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~--l~~l~ 1617 (1807)
+.++.+.| ....+..+..-+.+....|.++...|..+-..+..+.......-....+--.+-..+...+.. +.++.
T Consensus 3 ~~~~~d~~~~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~al 82 (234)
T cd07665 3 FNKATDAVSKMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRAL 82 (234)
T ss_pred hhHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy2547 1618 DVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRS-AMDVENE 1696 (1807)
Q Consensus 1618 ~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~-~~~a~~~ 1696 (1807)
..|.+....+...- -..+..+.-.+..-|++.-..+..++.-+++-.+-......--.+++++-...... ...-..+
T Consensus 83 s~laev~~~i~~~~--~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK 160 (234)
T cd07665 83 SQLAEVEEKIEQLH--QEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDK 160 (234)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1697 EKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNET 1763 (1807)
Q Consensus 1697 ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~L 1763 (1807)
+..++.++.+++.++.+++.+++.+-+.+.......+ ..++..+...+..+.+.+-+..+++-++
T Consensus 161 ~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe--~er~~Dfk~~v~~fles~ie~qke~ie~ 225 (234)
T cd07665 161 LQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFE--KEKSKDFKNHIIKYLETLLHSQQQLVKY 225 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=95.00 E-value=1.3 Score=55.19 Aligned_cols=221 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhhccCC-------CHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHh----------------
Q psy2547 1549 AVNKNIQS-------NPEQIRERANEINNVIKSLTDIDTIL-TETAGDLAKANDLKRKANLTKA---------------- 1604 (1807)
Q Consensus 1549 vl~~~i~~-------~~~~I~~l~~~i~~~~~~L~~~~~~l-~~~~~~l~~a~~L~~~a~~a~~---------------- 1604 (1807)
|+.+.++. ....+..+...+..+...|.+....+ .+.+.....+..-......+-.
T Consensus 68 ~l~l~~~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 147 (424)
T PF03915_consen 68 VLSLNEEPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSK 147 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEecccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCc
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1605 ----GADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQ 1680 (1807)
Q Consensus 1605 ----ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk 1680 (1807)
++..++.++.-+++............-+.+..--..++.+.-... ......-++.....+...-+.|-+++++|+
T Consensus 148 ~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~-~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQ 226 (424)
T PF03915_consen 148 SDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNAS-GDSNRAYMESGKKKLSEESDRLLTKVDDLQ 226 (424)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1681 AGFLQNGRSAMDVEN-----EEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTA 1755 (1807)
Q Consensus 1681 ~~l~~~~~~~~~a~~-----~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~ 1755 (1807)
..++.++..+..-.. +++.+...+..+...+++++.-+..++-.....=+.--+..-+-++...-.+.|..++.+
T Consensus 227 D~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~e 306 (424)
T PF03915_consen 227 DLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKE 306 (424)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q psy2547 1756 KLKQLNETEAMFNSQ 1770 (1807)
Q Consensus 1756 ~~~~l~~Le~~i~~~ 1770 (1807)
.++.+.+.-..++..
T Consensus 307 Dl~k~~etf~lveq~ 321 (424)
T PF03915_consen 307 DLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 409
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=94.95 E-value=9.5 Score=44.19 Aligned_cols=216 Identities=10% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q psy2547 1561 IRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAE--VAIQTAK 1638 (1807)
Q Consensus 1561 I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~--~~l~~a~ 1638 (1807)
+..+.+.+......+.+.+.-..+.+.-+...+.-++++...-..+..-.+++......+..+-..+...+ ..+..+-
T Consensus 3 ~~~~~~~~~~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l 82 (234)
T cd07664 3 VNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRAL 82 (234)
T ss_pred hhHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1639 DDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRY 1718 (1807)
Q Consensus 1639 ~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l 1718 (1807)
..+.++..+|..+ ...+.....-.+.+.=..+..+-..++.+-.+...+-.....++..+...+.++
T Consensus 83 ~~laev~~ki~~~-------------~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~ 149 (234)
T cd07664 83 SQLAEVEEKIDQL-------------HQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAE 149 (234)
T ss_pred HHHHHHHHHHHHH-------------HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1719 QET-----DNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1719 ~~~-----~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l 1791 (1807)
..+ .+++.+.+.++.++..+..+.+.+-+...+.+...+.+.+ .+++.+....+..+.+..-+.++++.++
T Consensus 150 ~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe--~er~~dfk~~l~~fles~ie~qke~ie~ 225 (234)
T cd07664 150 AKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFE--KERVKDFKTVIIKYLESLVQTQQQLIKY 225 (234)
T ss_pred HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 410
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=94.93 E-value=6.3 Score=43.89 Aligned_cols=224 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHh--hhhccCCCHHH
Q psy2547 1483 FRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLA--VNKNIQSNPEQ 1560 (1807)
Q Consensus 1483 ~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~v--l~~~i~~~~~~ 1560 (1807)
..++...+..++..-....+....-+++.++........ +...|.+|.++.....-.+++..... ..+++..-..+
T Consensus 24 ~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~--~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ihl~~k~aQ 101 (280)
T COG5074 24 MNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRK--LRRSLDNFSSQTTDLQRNLKKDIKSAERDGIHLANKQAQ 101 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1561 IRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDD 1640 (1807)
Q Consensus 1561 I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~ 1640 (1807)
-+...+++.++......++..-.+-..+..+.+-...+-+..+++.+..-.+.+.-+-.-..+..+-..-+ .+.+-.+
T Consensus 102 ae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEdeve~aInd~nG~qvfsqalL~anr~ge--AktaL~E 179 (280)
T COG5074 102 AENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAAINDVNGQQVFSQALLNANRRGE--AKTALAE 179 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchHHHHHHhcccchHHHHHHHHHhcCccch--HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1641 ISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQ 1710 (1807)
Q Consensus 1641 i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~ 1710 (1807)
.+.-.++|..++..+.++...++.++..+.+-+..++.+.+.+...++.+.+.....+.+.+.+..++++
T Consensus 180 vq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkk 249 (280)
T COG5074 180 VQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKK 249 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhc
No 411
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=94.90 E-value=3.7 Score=45.64 Aligned_cols=138 Identities=6% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy2547 1642 SAARKDLSQITNDLDDAQQKSNETN--VKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSR-- 1717 (1807)
Q Consensus 1642 ~~~~~~l~~ie~~l~~~e~~l~~~e--~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~-- 1717 (1807)
+.+..-++.++..+..+-+.++++. ..|+.|++.+..++..+...+..+.+++...+.+..+....+.++.+|.+.
T Consensus 5 ~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~ 84 (207)
T PF05546_consen 5 KKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKH 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy2547 1718 --YQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQL-NETEAMFNSQESELTELSK 1779 (1807)
Q Consensus 1718 --l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l-~~Le~~i~~~e~~le~le~ 1779 (1807)
-..--++...+...-........+++.++.....+.++....| +.+-..+.+-+-.-+.+..
T Consensus 85 sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr 149 (207)
T PF05546_consen 85 SWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIRR 149 (207)
T ss_pred CCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 412
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=94.90 E-value=0.9 Score=52.23 Aligned_cols=162 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1622 EARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLE 1701 (1807)
Q Consensus 1622 ~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~ 1701 (1807)
+..++++.++.-+++-+.-|.++..+. ..+.+.-++......++++.+....|.+.+.+..... .+
T Consensus 150 ~p~eaq~Iaqailkqse~lIN~Ls~rA--r~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfd------------p~ 215 (372)
T COG3524 150 DPKEAQKIAQAILKQSEKLINQLSERA--RRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFD------------PK 215 (372)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccC------------hh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy2547 1702 KEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEA--MFNSQESELTELSK 1779 (1807)
Q Consensus 1702 ~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~--~i~~~e~~le~le~ 1779 (1807)
.+++-.-.-+..|+.++..++.+|.+.+.......-++..|+.+++++.+++....++|-.-.. .+.....+.+.+.-
T Consensus 216 ~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~l~l 295 (372)
T COG3524 216 AQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLYL 295 (372)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy2547 1780 NIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1780 el~~L~~el~~l~~~I~~ 1797 (1807)
+-.-.++.+......++.
T Consensus 296 E~~fAekay~AAl~SlEs 313 (372)
T COG3524 296 ENTFAEKAYAAALTSLES 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHH
No 413
>PHA03246 large tegument protein UL36; Provisional
Probab=94.89 E-value=33 Score=50.12 Aligned_cols=468 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHhhhccCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy2547 1224 EDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQRINLARLALNDLTEEIKKLNKTGEM------ 1297 (1807)
Q Consensus 1224 ~~lq~lL~~~~~~~~~~~~l~~~l~~l~~~l~~~~~l~~~e~~l~~~~~~~~~~~~~le~L~~el~~l~~~~~~------ 1297 (1807)
..++.+..-+....+...+++..+.+++++....+.-...+.-...+..-+..+|..-+=-..||..|...+..
T Consensus 1353 R~~qdL~K~i~aarqR~~Ele~a~ad~e~~~~~~~~~~~~erW~~di~AaL~r~EtrseFDa~EL~RLrd~Aa~~GYd~~ 1432 (3095)
T PHA03246 1353 RKIAELNKLIESVNQRVGELDIALQTYERNRISAERSRSEDLWTSSITSLLVNAEIKSEFDAMEINSLEETARNAGYDTI 1432 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhcCCChH
Q ss_pred -HHHHHHHHhhhchhhHHHHH-----------------------------------------------------------
Q psy2547 1298 -LKENATLLQENNVEGALELT----------------------------------------------------------- 1317 (1807)
Q Consensus 1298 -l~~~~~~l~~~~~~~a~~~~----------------------------------------------------------- 1317 (1807)
++.++++.-..+...+...+
T Consensus 1433 ~frkrAEqalaA~a~~v~~ALetVl~FNPYspEN~~~~~~PPia~L~~ItW~DaF~aAAP~yt~LFgVdvE~L~~LmRIa 1512 (3095)
T PHA03246 1433 RFKSRAEKIVSAHARVVENAIETVLKFNPYSTTNIIHGLKPPIAALKNITWGDAFFAAAPYYTKLFGVNCDVLISLLKIL 1512 (3095)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCCCCcccCCCCCChHHHHhhCchHhhhhhhHHHHHHHhcccHHHHHHHHHHH
Q ss_pred ----------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH
Q psy2547 1318 ----------------RQAHDTSLKLKEQSTETE---KQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKIT 1378 (1807)
Q Consensus 1318 ----------------~~a~~~~~~a~~~~~~~~---~~i~~a~~~~~~a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~ 1378 (1807)
.++...+..--.++-.+. ....+.-.+.......|..++.+.-+..-....++....+++.
T Consensus 1513 ~giL~~A~a~~G~~dY~d~V~~l~~DL~~VP~LakYVdFYrrgy~~F~~~~~~L~~lRADv~qA~G~v~~Ei~~ALEevt 1592 (3095)
T PHA03246 1513 FAILRHASAHPGNLDYYFLVGEIESDLRAIPSLAKYVDFYRRGHDSFEGFLARLEQMRVEALHASGRVSIEISDALETLA 1592 (3095)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhhChhHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHH
Q ss_pred hhhcccchhHHHhhccCCCCCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHhhhh
Q psy2547 1379 SLEKNLPDLNELICDKRGDPCDNLCGGAGCGKCGGMWCSNGTLSESNSAKDYAETSKKLINEKESKAEELRKHMIILSES 1458 (1807)
Q Consensus 1379 ~l~~~L~~l~~~icg~~~~~C~~~Cgg~~C~~Cgg~~C~~~a~~~a~~A~~~a~~l~~~i~e~~~~~eeL~~~~~~~~~~ 1458 (1807)
... .-....+.+-.+..-.|++ ..++..+-++++.-+. ..
T Consensus 1593 ~vR-~~e~A~~~L~~GV~L~iPS----------------e~li~~~v~~Le~~D~-----------------------~~ 1632 (3095)
T PHA03246 1593 RTH-SPEGARRALEYGVSIVIPS----------------ANTIMSIADALQKEKI-----------------------TE 1632 (3095)
T ss_pred Hhc-CHHHHHHHHHcCCeeeCCC----------------HHHHHHHHHHHhhhcc-----------------------cc
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy2547 1459 NSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGAT 1538 (1807)
Q Consensus 1459 ~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~ 1538 (1807)
.....|++-....+++-...++..+.+...+.+++..--+.+++....+..+.++.+.. -+.+||.+|.-....
T Consensus 1633 f~gTAYaey~a~~vrrDl~~ak~al~~a~~a~~eAt~Ra~~iLrevvea~~a~dr~~ae------~LANLKnLLRLtp~P 1706 (3095)
T PHA03246 1633 LDGTAYAEYSAHILRRDNDAIKSITQRVTTAIEAAKSRGESILKDLAEASYAADRETAE------QLANLKNLLRLVAMP 1706 (3095)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHhcccCCC
Q ss_pred hHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHHH--------------------------HHHHHHHHHHH
Q psy2547 1539 LADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTI--------------------------LTETAGDLAKA 1592 (1807)
Q Consensus 1539 ~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~--------------------------l~~~~~~l~~a 1592 (1807)
+. .+.+++=..+.++|-.-+.-|...+++-++++.. +....+.++..
T Consensus 1707 ~~-------iA~AIDkA~Sa~DIVTQaALLL~~vEet~ELDvqAVeWL~hAr~IIDSHpLT~rIDg~GPm~~yaeRIDaL 1779 (3095)
T PHA03246 1707 AH-------IAKAIDKAETANDIVTQAALLLTKVEETKELDTQTVEWLKHAESVIDSHDLTVRIDESGPMTIYAERIDAL 1779 (3095)
T ss_pred HH-------HHHHhhhcccHHHHHHHHHHHHHHhhhccccCHHHHHHHHHHHHHhccCccccccCCCCCcHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q psy2547 1593 NDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQ------------- 1659 (1807)
Q Consensus 1593 ~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e------------- 1659 (1807)
..|.+++..++.+++..+..=+++-.....+........+....+.+.+..++...+.+.....+.+
T Consensus 1780 ~~LR~rLd~Lr~~L~~AEaaWDeaW~~F~r~~~~~d~S~eg~~~A~~~a~aLqas~n~V~~LRad~eY~RLPak~~G~id 1859 (3095)
T PHA03246 1780 VRLENRLAELKSELALAEVAWDDTWSTFIHDKDRIDKSSEGFSAARESAARAKVSTNAINALRNNAEYNRLPAKIIGLID 1859 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchhhhcchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2547 1660 QKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARG 1739 (1807)
Q Consensus 1660 ~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~ 1739 (1807)
.+..+-..-|+++-..+.+++..+.++.....++-.+. .++.|+..+.+.....+.+-.=..+.-..+
T Consensus 1860 aK~aeR~~ale~f~~t~~~~e~~~~rl~~l~~rIp~E~------------~~d~Lr~Ll~eFDaiak~LPkW~~~~~~~y 1927 (3095)
T PHA03246 1860 SKYRDRTVVLDAFLDSMKEIEDTQKQMEILCSKIPLTF------------SLNDLRAISSQFDDIAKRLPKWYVKQVGRY 1927 (3095)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc------------CHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1740 QMLLNKASQLSVNTTAK 1756 (1807)
Q Consensus 1740 ~~l~~~a~~l~~~~~~~ 1756 (1807)
.+|..-.-.|-..+.+.
T Consensus 1928 r~Ll~lRLgLYaaYa~~ 1944 (3095)
T PHA03246 1928 SRLIKLRLALYAAYSNA 1944 (3095)
T ss_pred HHHHHHHHHHHHHHHHh
No 414
>KOG2196|consensus
Probab=94.88 E-value=5.2 Score=45.08 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1642 SAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQET 1721 (1807)
Q Consensus 1642 ~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~ 1721 (1807)
..++.-|++-..++++-++-..+...+|..-.+.|-+...+|..+-..+.+++..-+.+...++-...+.++|++-+..+
T Consensus 74 ~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~l 153 (254)
T KOG2196|consen 74 KTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPL 153 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1722 DNKLLS---------KAESSGLKRARGQMLLNKASQLSVNTTAKL-------------KQLNETEAMFNSQESELTELSK 1779 (1807)
Q Consensus 1722 ~~~l~~---------~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~-------------~~l~~Le~~i~~~e~~le~le~ 1779 (1807)
+.+++. .-.+-++.-..++.+..+++.+..++...+ ..+..+.+-+......|.-++.
T Consensus 154 E~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d 233 (254)
T KOG2196|consen 154 ETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDD 233 (254)
T ss_pred HHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHH
Q psy2547 1780 NIAELQKRIQSCIN 1793 (1807)
Q Consensus 1780 el~~L~~el~~l~~ 1793 (1807)
....++++++.+..
T Consensus 234 ~st~~e~k~d~i~K 247 (254)
T KOG2196|consen 234 NSTQLEKKLDKIKK 247 (254)
T ss_pred hhHHHHHHHHHHHh
No 415
>KOG3958|consensus
Probab=94.87 E-value=9.7 Score=43.90 Aligned_cols=238 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q psy2547 1565 ANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVL--------TEARTAQDMAEVAIQT 1636 (1807)
Q Consensus 1565 ~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L--------~~a~~~~~~a~~~l~~ 1636 (1807)
.++.+.+...+.++...+++++.+.+.|.+-+.--..+.+.+..+++++..+.-+. ..+......++-+..+
T Consensus 93 ~qK~qRll~Ev~eL~~eve~ik~dk~~a~Eek~t~~l~A~vla~lkk~l~al~leq~lGk~atp~~~~vk~ll~q~E~~k 172 (371)
T KOG3958|consen 93 QQKYQRLLHEVQELTTEVEKIKTDKESATEEKLTPVLLAKVLAALKKQLVALHLEQLLGKDATPDGALVKRLLLQLEATK 172 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhhc
Q ss_pred HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy2547 1637 AK----------------DDISAARKDLSQITNDLDDAQQKSNETNVKVKL--LQERLKSIQAGFLQN-GRSAMDVENEE 1697 (1807)
Q Consensus 1637 a~----------------~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~--l~~~le~lk~~l~~~-~~~~~~a~~~a 1697 (1807)
.. ....+++++|.+++..+..-...++.+..-+.. +-..++.|+.+...+ -..+..+++++
T Consensus 173 ~sg~~t~~p~p~~d~s~~akVA~LE~Rlt~lE~vvg~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL 252 (371)
T KOG3958|consen 173 NSGKTTGTPRPEQDFSQAAKVAELEKRLTELETVVGCDQDAQNPLSAGLQGACVLETVELLQAKVSALDLAVLDQVEQRL 252 (371)
T ss_pred ccCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1698 KNLEKEVALAQ-------------KQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETE 1764 (1807)
Q Consensus 1698 e~a~~~a~~ae-------------~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le 1764 (1807)
..+..+++++. +++.+|-+-+..-.-..+.+...++. ..-+++|.+.+..+.+-+......-+.+.
T Consensus 253 ~s~lgK~~~IaEk~~~s~~Da~~d~KV~elye~~qrw~pi~stLP~~V~r-l~al~~LHeqa~~Fa~~lthl~t~q~~i~ 331 (371)
T KOG3958|consen 253 QSVLGKVNEIAEKHKASVEDADTDSKVHELYETIQRWSPIASTLPELVQR-LVALKQLHEQAMQFAQLLTHLDTTQQMIA 331 (371)
T ss_pred HHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHhhhhHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy2547 1765 AMFNSQESELTELSKNIAELQKRIQSCINFIVDKSNNYK 1803 (1807)
Q Consensus 1765 ~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~~Y~ 1803 (1807)
+++..+..-|-+.+....+--..+......|.+++....
T Consensus 332 ~sl~~n~ell~~vqtt~~qnl~tV~~k~a~ie~rva~l~ 370 (371)
T KOG3958|consen 332 NSLKDNTELLTQVQTTMRQNLATVEGKFASIEERVAKLG 370 (371)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 416
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.86 E-value=1.9 Score=46.58 Aligned_cols=121 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1639 DDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRY 1718 (1807)
Q Consensus 1639 ~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l 1718 (1807)
..+..+-+-|..+-.....-....+.+...+..+...++.++..+..++..++.++.++..++.+...++.++..+...+
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1719 QETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNS 1769 (1807)
Q Consensus 1719 ~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~ 1769 (1807)
+..++.+...... +......+..++..+..++..|.+.+.+
T Consensus 111 k~~kee~~klk~~----------~~~~~tq~~~e~rkke~E~~kLk~rL~q 151 (151)
T PF11559_consen 111 KQEKEELQKLKNQ----------LQQRKTQYEHELRKKEREIEKLKERLNQ 151 (151)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 417
>PRK11519 tyrosine kinase; Provisional
Probab=94.86 E-value=1.3 Score=60.34 Aligned_cols=154 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy2547 1635 QTAKDDISAARKDLSQ--ITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAM--DVENEEKNLEKEVALAQKQ 1710 (1807)
Q Consensus 1635 ~~a~~~i~~~~~~l~~--ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~--~a~~~ae~a~~~a~~ae~~ 1710 (1807)
+.+.+-+..+-+.--+ ++...+.+++.+.=+++++.+++.+++..+..+++-+.+-. ++..+++...+++.+++.+
T Consensus 240 ~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~q 319 (719)
T PRK11519 240 EQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQ 319 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1711 ASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1711 l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
+.+++.++.++.......--.+..+..+...|+++++.+. .+...+...+.++.+++++.+..++-...|-++.++
T Consensus 320 l~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~----~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 320 LNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLN----GRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q psy2547 1791 CI 1792 (1807)
Q Consensus 1791 l~ 1792 (1807)
..
T Consensus 396 ~~ 397 (719)
T PRK11519 396 LK 397 (719)
T ss_pred Hh
No 418
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=94.85 E-value=1.7 Score=50.18 Aligned_cols=133 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1575 LTDIDTILTETAG--DLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQIT 1652 (1807)
Q Consensus 1575 L~~~~~~l~~~~~--~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie 1652 (1807)
++-+-.++..+.. ...-.+.-..++...-.+++.++-++.=++..|+++..+.+... ..+.+..+.+...+++...+
T Consensus 128 Le~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~ 206 (269)
T PF05278_consen 128 LECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKK 206 (269)
T ss_pred HHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1653 NDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQ 1708 (1807)
Q Consensus 1653 ~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae 1708 (1807)
.+++..+.++...++.+.++..++.+++.++.+++.....+...+..++.+.+...
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 419
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=94.85 E-value=2.2 Score=48.30 Aligned_cols=179 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1614 QKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQ-ITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMD 1692 (1807)
Q Consensus 1614 ~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~-ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~ 1692 (1807)
..-.+.+...-......++.+......|..++++... ..+.+..-...+..+...++++...++.-+..+..-.+.+..
T Consensus 14 ~~~~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~ 93 (204)
T PF10368_consen 14 KKPEEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEK 93 (204)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1693 VENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQES 1772 (1807)
Q Consensus 1693 a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~ 1772 (1807)
++++++.+...++.++.+ .++++.+.+...+..+-................=+.|...+......++.|..+++...+
T Consensus 94 a~~e~~~~~~~i~ki~d~--~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~ 171 (204)
T PF10368_consen 94 AKEEFKKAKKYIDKIEDE--KLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQ 171 (204)
T ss_dssp HHHHHTT----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1773 ELTELSKNIAELQKRIQSCINF 1794 (1807)
Q Consensus 1773 ~le~le~el~~L~~el~~l~~~ 1794 (1807)
..+++........+.....-+.
T Consensus 172 ~y~~~~~~~~~fn~~t~~yN~~ 193 (204)
T PF10368_consen 172 SYKEVNKQKEKFNEYTKKYNEE 193 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 420
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=94.84 E-value=1.5 Score=55.51 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1637 AKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRS 1716 (1807)
Q Consensus 1637 a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~ 1716 (1807)
+..-..+-.+.+..-..+..-.+.+......+..+.+++++..+..+.+.++.++..+.+++..+..+++.+++.+.+.+
T Consensus 183 v~~l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~pe 262 (489)
T PF05262_consen 183 VQELREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKLPE 262 (489)
T ss_pred HHHHhhccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcc
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy2547 1717 RYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQ-LNETEAMFNSQESELTELSKNIAELQKRIQ-SCINF 1794 (1807)
Q Consensus 1717 ~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~-l~~Le~~i~~~e~~le~le~el~~L~~el~-~l~~~ 1794 (1807)
.-+.......++.+ ++.+.++++.+.+++...+++.....+ .+++..+.+..++..+.++.+...-..++. ++...
T Consensus 263 ~ae~~~~~edek~a--E~~kkE~EKaq~E~~k~~Eea~kake~~aee~k~Eak~~~~~ae~K~~Eaq~er~~iAkD~qk~ 340 (489)
T PF05262_consen 263 PAEAQQKKEDEKLA--EEEKKEAEKAQEEAKKKQEEAKKAKEQAAEELKQEAKSQEKEAEKKEEEAQQERKEIAKDQQKL 340 (489)
T ss_pred hhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhh
Q psy2547 1795 IVDKSN 1800 (1807)
Q Consensus 1795 I~~~~~ 1800 (1807)
|.++..
T Consensus 341 ~~e~~~ 346 (489)
T PF05262_consen 341 IEEQKA 346 (489)
T ss_pred Hhhhhh
No 421
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.83 E-value=0.9 Score=52.07 Aligned_cols=102 Identities=11% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1582 LTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQK 1661 (1807)
Q Consensus 1582 l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~ 1661 (1807)
+.+++.+....+.++.++.......++...-|.+..+..+.+........++|+.+..+|..++..|.+++.+....+..
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-H
Q psy2547 1662 SNETNVKVKLLQERLKSIQAG-F 1683 (1807)
Q Consensus 1662 l~~~e~~l~~l~~~le~lk~~-l 1683 (1807)
+..+...+..|..+++++... +
T Consensus 83 i~r~~eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
No 422
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=94.83 E-value=0.047 Score=58.05 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCccccccccCCCCCCccccccCCCCcceeEEEeccceeEEEEEEEEE-----cCCCCCcEEEEEecCCCCCccch
Q psy2547 98 HKIHNIVYATVPRTKTISWWQSENGVENVTIQLDMEAEFHFTHLIIYF-----KTFRPAAMLIERSHDFGKTWQVY 168 (1807)
Q Consensus 98 h~~~~~~~~~~~~~~~~~wwqs~~~~~~v~i~l~l~~~f~~~~~~~~f-----~s~rP~~~~iers~d~g~~w~~~ 168 (1807)
++++++ |. +..|+|.+.....+--|+|||++.+.|+.|.|+. .+.+|..+-|+-|.| |.+|+++
T Consensus 24 ~~~~~~-dg-----~~~t~W~~~~~~~~~wi~vDL~~~~~i~~v~i~~~~~~~~~~~~~~~~i~~s~d-g~~W~~~ 92 (143)
T cd00057 24 WEASRA-RL-----NSDNAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGGGSSEWVTSYKVQYSLD-GETWTTY 92 (143)
T ss_pred CCcCee-ec-----CCCCcccCCCCCCCceEEEECCCCEEEEEEEEccCCCCCccCeeEEEEEEEECC-CCCEeEE
No 423
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=94.83 E-value=1.7 Score=54.93 Aligned_cols=170 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1609 TKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGR 1688 (1807)
Q Consensus 1609 l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~ 1688 (1807)
+..-..+-...++..+...+..+.+.+...+..+..++++.+.+.++...+.++......++.-+.++++-+++...+.+
T Consensus 183 v~~l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~pe 262 (489)
T PF05262_consen 183 VQELREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKLPE 262 (489)
T ss_pred HHHHhhccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy2547 1689 SAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAES-SGLKRARGQMLLNKASQLSVNTTAKLKQLN-ETEAM 1766 (1807)
Q Consensus 1689 ~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~-l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~-~Le~~ 1766 (1807)
..+. ....+.+..++..+++++...++.+...+++...++. .+.+..+.+.-+..+++-..+......++. ++++.
T Consensus 263 ~ae~--~~~~edek~aE~~kkE~EKaq~E~~k~~Eea~kake~~aee~k~Eak~~~~~ae~K~~Eaq~er~~iAkD~qk~ 340 (489)
T PF05262_consen 263 PAEA--QQKKEDEKLAEEEKKEAEKAQEEAKKKQEEAKKAKEQAAEELKQEAKSQEKEAEKKEEEAQQERKEIAKDQQKL 340 (489)
T ss_pred hhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q psy2547 1767 FNSQESELTELSKN 1780 (1807)
Q Consensus 1767 i~~~e~~le~le~e 1780 (1807)
+++.+.+....++.
T Consensus 341 ~~e~~~e~~~~~e~ 354 (489)
T PF05262_consen 341 IEEQKAEKKKKEEE 354 (489)
T ss_pred Hhhhhhhhhhhhhh
No 424
>COG5283 Phage-related tail protein [Function unknown]
Probab=94.82 E-value=25 Score=48.45 Aligned_cols=541 Identities=8% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhh-hccCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1221 KKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQI-MNNEDPNGVGKTLGNTTQRINLARLALNDLTEEIKKLNKTGEMLK 1299 (1807)
Q Consensus 1221 ~~l~~lq~lL~~~~~~~~~~~~l~~~l~~l~~~l-~~~~~l~~~e~~l~~~~~~~~~~~~~le~L~~el~~l~~~~~~l~ 1299 (1807)
.....|..+-+.+..+......+++++.....-+ +...++..+-+.++....-...+.+++.++.+.+....+.++++.
T Consensus 19 ~~~~~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~ 98 (1213)
T COG5283 19 IAVKNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYN 98 (1213)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHh
Q psy2547 1300 ENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITS 1379 (1807)
Q Consensus 1300 ~~~~~l~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~~i~~a~~~~~~a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~~ 1379 (1807)
.+.... +..+..+.....-+.+++...+..+..+...++...+......+++++..+.+...........+..-.+...
T Consensus 99 ~q~tqa-e~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~q~~a 177 (1213)
T COG5283 99 AQYTQA-ENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQTEA 177 (1213)
T ss_pred HHHHHH-HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHHHHHH
Q ss_pred hhcccchhHHHhhccCCCCCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHhhHh-hhhhHHHHHHHHHHHHHhhhh
Q psy2547 1380 LEKNLPDLNELICDKRGDPCDNLCGGAGCGKCGGMWCSNGTLSESNSAKDYAETSKKL-INEKESKAEELRKHMIILSES 1458 (1807)
Q Consensus 1380 l~~~L~~l~~~icg~~~~~C~~~Cgg~~C~~Cgg~~C~~~a~~~a~~A~~~a~~l~~~-i~e~~~~~eeL~~~~~~~~~~ 1458 (1807)
+..++.+....- ......+.++.+.-.+.... .+.+.....++......++..
T Consensus 178 ln~q~~~t~k~~--------------------------~~~~~~l~e~qq~~~q~~~a~~~~L~~s~~q~~~s~~qlsk~ 231 (1213)
T COG5283 178 LNKQLERTKKVA--------------------------DALTYVLDEAQQKLSQALSARLERLQESRTQMSQSSGQLGKR 231 (1213)
T ss_pred HHHHHHhhhhhh--------------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy2547 1459 NSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAAN----ILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNA 1534 (1807)
Q Consensus 1459 ~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~----~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~ 1534 (1807)
+........+...+...-.-...........-.+++..+ +++..+++.+..+..+.+.....++.+.+.+++-...
T Consensus 232 ~e~~~~~aG~~~~~~a~~~~s~a~i~aAv~~~~~mn~~l~~~~kq~k~~rdn~~k~t~q~~~m~~a~~~ta~~~kd~~~~ 311 (1213)
T COG5283 232 LETDKAGAGALGLLGAALAGSFAAIGAAVRRTAQMNGELMDKTKQVKGARDNLGKVTSQGEEMSDAIQETAEHIKDSGRE 311 (1213)
T ss_pred cccchhhhhhHHHHHHhhhcchhHHHHHHHHHHHHhhhhhhhHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHcchhhhh
Q ss_pred C----------------------CCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-
Q psy2547 1535 P----------------------GATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAK- 1591 (1807)
Q Consensus 1535 ~----------------------~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~- 1591 (1807)
. .-..+....++.. .++.+.....-..++.+.+......+......+....+.+..
T Consensus 312 lskAaai~~~~~~Gva~g~~~~~~~ak~~l~~~~~~-aa~~ataF~~~adel~~~l~k~a~~~k~p~~~~~~ggs~L~~~ 390 (1213)
T COG5283 312 LSKAAAIGAAAAMGVAAGKFPTGQEAKPTLKEMARV-AALTATAFNLPADELNDNLAKWAGELKFPASDAISGGSLLAML 390 (1213)
T ss_pred HHHHHHHHHHHhcccccccccchhhhhHHHHHHHHH-HHHHHHhccChhHHHHHHHHHHHHHhccchhHHHHHHHHHHhc
Q ss_pred ----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1592 ----------ANDLKRKANLTKAGADSTKNTVQKIVDVL-----TEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLD 1656 (1807)
Q Consensus 1592 ----------a~~L~~~a~~a~~ea~~l~~~l~~l~~~L-----~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~ 1656 (1807)
++.+.+.+-....+-..+........... ..+..+...+-+++-.+-.-+....+..........
T Consensus 391 ~~~~~~~gG~lk~vs~~ag~~a~~t~~lS~~~aa~l~~~F~~lgas~e~ag~a~~~a~~~~l~~vk~~t~~~~~gv~l~~ 470 (1213)
T COG5283 391 TDLLQGKGGDLKKVSDAAGAGAVETLGLSADAAANLATTFGTLGASAERAGDTLTKALLRLLDIVKKNTDGFALGVTLDY 470 (1213)
T ss_pred cccccccCcchHHHHHHhhccchhhcccchHHHHHHHHHHhhhHhHHHHHHHHHHHhhhhhhhhHhhhhhHHHHHhhHhh
Q ss_pred HHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q psy2547 1657 DAQQKSNETNVKVKL----------------------LQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVAL--AQKQAS 1712 (1807)
Q Consensus 1657 ~~e~~l~~~e~~l~~----------------------l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~--ae~~l~ 1712 (1807)
.....++........ ...--..+...+..+...+.++..++......+.. .+++..
T Consensus 471 ~~~~~~~k~m~~~~~~~~~lim~~~k~Lp~~~~~~~mad~Fgk~lge~~kkla~~iaE~~~~ladn~~k~~~~s~~ee~~ 550 (1213)
T COG5283 471 LTGAEAQKLMVTFAESAAMLIMLANKGLPVEDSAGTMADAFGKKLGEALKKLADAIAELFQSLADNRGKIANGSMEEELL 550 (1213)
T ss_pred hcHHHHHhhhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHhhcccccchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1713 GLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCI 1792 (1807)
Q Consensus 1713 el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~ 1792 (1807)
.+.+.+..+.+....-. ++-.....++++-.++.+..-.-.. ++.|...++++-..+.....+...+-..+....
T Consensus 551 ~~~k~~~~iw~~~ks~~--~~~s~~~~e~l~~~in~l~~~~g~~---i~sLg~evek~~g~l~~~~~~a~~lag~~a~~~ 625 (1213)
T COG5283 551 TLYKATAGIWQIYKSGV--TEFSDAKGEQLKVGINDLVAMAGGV---IESLGKEVEKLTGLLKAAAGEADNLAGKMATVA 625 (1213)
T ss_pred HHHHHHHHHHHHHhcch--hHHHHHHHHHHhhhhHHHHHHhhhH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q psy2547 1793 NF 1794 (1807)
Q Consensus 1793 ~~ 1794 (1807)
..
T Consensus 626 a~ 627 (1213)
T COG5283 626 AG 627 (1213)
T ss_pred hh
No 425
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.82 E-value=7.5 Score=44.81 Aligned_cols=154 Identities=7% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1646 KDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKL 1725 (1807)
Q Consensus 1646 ~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l 1725 (1807)
.+-.++....+.+...+..+++-...+.++..++...+.+..........--.++...++....-+++....++.+.+..
T Consensus 51 ~eF~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 51 LEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy2547 1726 LSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSNNY 1802 (1807)
Q Consensus 1726 ~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~~Y 1802 (1807)
.+ .+......+......++.+.+.-+.++-+.+++.+.+....+++..++.+|++++++++...+++.+.+.++
T Consensus 131 ~~---~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~F 204 (240)
T cd07667 131 TE---DFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRVECFNADLKADMERW 204 (240)
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 426
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=94.81 E-value=4.9 Score=45.66 Aligned_cols=179 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1619 VLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQK-SNETNVKVKL-LQERLKSIQAGFLQNGRSAMDVENE 1696 (1807)
Q Consensus 1619 ~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~-l~~~e~~l~~-l~~~le~lk~~l~~~~~~~~~a~~~ 1696 (1807)
...++.+..+.....+++....+..+++.|..+...-..++.+ ...+..-+.+ ...-+..+..-++.....+..++.-
T Consensus 4 d~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~ 83 (204)
T PF04740_consen 4 DVSELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDF 83 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1697 EKNLE--KEVALAQKQAS-GLRSRYQETDNKLLSKAESSGLKRARGQMLLN----KASQLSVNTTAKLKQLNETEAMFNS 1769 (1807)
Q Consensus 1697 ae~a~--~~a~~ae~~l~-el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~----~a~~l~~~~~~~~~~l~~Le~~i~~ 1769 (1807)
..++. ..+.--+..++ +++..++...+.+......+......+..+.. ....+...+....+.+++..+++..
T Consensus 84 ~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~ 163 (204)
T PF04740_consen 84 QSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRA 163 (204)
T ss_pred HHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1770 QESELTELSKNIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1770 ~e~~le~le~el~~L~~el~~l~~~I~~ 1797 (1807)
...+....-.++.++.+.|......|..
T Consensus 164 fd~~~~~~~~~~~~~~~~l~~~l~~l~~ 191 (204)
T PF04740_consen 164 FDQQSSSIFSEIEELLQALQSGLSQLQS 191 (204)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 427
>KOG1666|consensus
Probab=94.80 E-value=6.3 Score=43.69 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q psy2547 1611 NTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKL--------LQERLKSIQAG 1682 (1807)
Q Consensus 1611 ~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~--------l~~~le~lk~~ 1682 (1807)
..++..+++.......+...-..+.... -.+-++.+.+++..+++++.-|.++...+.. +..+|.+.+..
T Consensus 3 ~~fe~yEqqy~~l~a~it~k~~~~~~~~--~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksd 80 (220)
T KOG1666|consen 3 SLFEGYEQQYRELSAEITKKIGRALSLP--GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSD 80 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHhcCC--chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1683 FLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNE 1762 (1807)
Q Consensus 1683 l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~ 1762 (1807)
+.+++..++.....--.+-.+.+.......+-.........+|-+-.+.++....+++.-...|..-.+--.+.+..|..
T Consensus 81 l~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~ 160 (220)
T KOG1666|consen 81 LKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHG 160 (220)
T ss_pred HHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2547 1763 TEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKS 1799 (1807)
Q Consensus 1763 Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~ 1799 (1807)
-.++++...++|-+..+.+.+-.+-+..+...+..-+
T Consensus 161 QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk 197 (220)
T KOG1666|consen 161 QREQLERARERLRETDANLGKSRKILTTMTRRLIRNK 197 (220)
T ss_pred HHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHH
No 428
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=94.79 E-value=1.7 Score=48.24 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2547 1670 KLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQL 1749 (1807)
Q Consensus 1670 ~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l 1749 (1807)
..+..-++.++..+......+.++.. -..++.+++.+.+++.++++....+.+.+.....+..+....+.++..|
T Consensus 5 ~~~~~~~d~lq~~i~~as~~lNd~TG-----Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 5 KKLSFYMDSLQETIFTASQALNDVTG-----YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-c
Q psy2547 1750 SVN----TTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSNN-Y 1802 (1807)
Q Consensus 1750 ~~~----~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~~-Y 1802 (1807)
.+. ...-+.+..+|-+.=..+++...++..++.+.+.+++.+-+.|...+-. |
T Consensus 80 LqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RY 137 (207)
T PF05546_consen 80 LQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRY 137 (207)
T ss_pred HhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>KOG4687|consensus
Probab=94.75 E-value=6.8 Score=44.34 Aligned_cols=191 Identities=6% Similarity=0.022 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy2547 1605 GADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETN----VKVKLLQERLKSIQ 1680 (1807)
Q Consensus 1605 ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e----~~l~~l~~~le~lk 1680 (1807)
++..+..+...+.+.+.....++..+-+++++.+.+.+.+....+.++-.++.+++.++-+- ..+.++-.+..++-
T Consensus 10 ~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLa 89 (389)
T KOG4687|consen 10 EIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLA 89 (389)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1681 AGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQL 1760 (1807)
Q Consensus 1681 ~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l 1760 (1807)
..+.+.++.-..+..+.+.+.++..++....+-+++..++-+.+...-..+-.....+--+-...-.++....+....+-
T Consensus 90 a~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak~ 169 (389)
T KOG4687|consen 90 ADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAKC 169 (389)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1761 NETEAMFNSQESELTELSKNIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1761 ~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I 1795 (1807)
..|+-.++.....-+++..+-.+.+-++..+..+|
T Consensus 170 a~LafDLkamideKEELimERDa~kcKa~RLnhEL 204 (389)
T KOG4687|consen 170 AGLAFDLKAMIDEKEELIMERDAMKCKAARLNHEL 204 (389)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHH
No 430
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=94.75 E-value=3.9 Score=48.83 Aligned_cols=158 Identities=10% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1634 IQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASG 1713 (1807)
Q Consensus 1634 l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~e 1713 (1807)
+.++...+.+++.+-..+=-....+.+.-..+.-+++.|+..|++++..+.+++..+.+-..+++..+...+.++.++.+
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH--------------------------------------------HHHHhHHHHHHHHHHHHHHHHH
Q psy2547 1714 LRSRYQETDNKLLS--------------------------------------------KAESSGLKRARGQMLLNKASQL 1749 (1807)
Q Consensus 1714 l~~~l~~~~~~l~~--------------------------------------------~~~~l~~~~~r~~~l~~~a~~l 1749 (1807)
|++++.+....+++ +-..+..+..+-+.|+.+++.|
T Consensus 159 Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~kl 238 (302)
T PF09738_consen 159 LREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKL 238 (302)
T ss_pred HHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1750 SVNTTAKLKQLN----------------------ETEAMFNSQESELTELSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1750 ~~~~~~~~~~l~----------------------~Le~~i~~~e~~le~le~el~~L~~el~~l 1791 (1807)
+.++++....-. .+...-.+..++|.++.=++.+.++++..+
T Consensus 239 k~qLee~~~~~~~~~~~~~~~~l~~~~~~En~d~~~~d~qrdanrqisd~KfKl~KaEQeit~~ 302 (302)
T PF09738_consen 239 KLQLEERQSEGRRQKSSSENGVLGDDEDLENTDLHFIDLQRDANRQISDYKFKLQKAEQEITTL 302 (302)
T ss_pred HHHHHHHHhccccccccCCCcccccccccccccccHHHhhhHHHHHHHHHHHHHHHHHHhhccC
No 431
>KOG4657|consensus
Probab=94.72 E-value=3.9 Score=45.34 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2547 1663 NETNVKVKLLQERLKSIQAGFLQN-GRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQM 1741 (1807)
Q Consensus 1663 ~~~e~~l~~l~~~le~lk~~l~~~-~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~ 1741 (1807)
..+...-+...+.+...+..+... ............+...++...+++.+.+++.+.+.++++....+-+++...+...
T Consensus 11 et~l~l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ 90 (246)
T KOG4657|consen 11 ETMLSLGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMG 90 (246)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhcC
Q psy2547 1742 LLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSK---NIAELQKRIQSCINFIVDKSNNYK 1803 (1807)
Q Consensus 1742 l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~---el~~L~~el~~l~~~I~~~~~~Y~ 1803 (1807)
+++++..+..+++.+.+.++.++.++....+-|.+... +-.++..+..+-...+.+++..|+
T Consensus 91 ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~wy~ 155 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAASWYN 155 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH
No 432
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=94.72 E-value=15 Score=45.24 Aligned_cols=310 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1421 LSESNSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAE-TSKKLINEKEAKAEEVFRGITTAKQESHAANIL 1499 (1807)
Q Consensus 1421 ~~~a~~A~~~a~~l~~~i~e~~~~~eeL~~~~~~~~~~~~a~~~ae-~a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~~~ 1499 (1807)
....+.+..+++.+...+... ...++-+.+..+.......+..+ .......-+.+-.......+.....+|+.+...
T Consensus 22 ~~~~~~~a~~s~~iL~~v~~~--d~~~vg~~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~~~~~~~~~~ky~sv~~q 99 (333)
T PF05816_consen 22 AEAQEKIAQFSDRILDRVRNK--DSGEVGELLNELRKEMDELDPSELKDEKKKGFLGKLFGKAKNSLERYFAKYQSVQSQ 99 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--ccchHhHHHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHH
Q psy2547 1500 AKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDID 1579 (1807)
Q Consensus 1500 A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~ 1579 (1807)
.+............+......+..+.....++ +.+|...|......++.++
T Consensus 100 Id~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~-----------------------------~~~L~~~I~ag~~~~~~l~ 150 (333)
T PF05816_consen 100 IDKIIAELESGQDELLRDNAMLDQLYEKNWEY-----------------------------YQELEKYIAAGELKLEELE 150 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1580 TI-LTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDA 1658 (1807)
Q Consensus 1580 ~~-l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~ 1658 (1807)
.. +..+......-.....+......-+..+++.+.+++..+.-+....=.+.--.+.-..-++.++..+...-...+..
T Consensus 151 ~~~~~~~~~~~~~d~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqir~iq~nN~~Li~ki~~a~~~TIP~~k~~ 230 (333)
T PF05816_consen 151 AELLPALQADAEGDQMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQIRMIQNNNRELIEKIQSAITTTIPAWKNQ 230 (333)
T ss_pred HhhhHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy2547 1659 QQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRAR 1738 (1807)
Q Consensus 1659 e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r 1738 (1807)
-...-.+..+-..++..-.--+..-+-+...++.+++...++...++..-=.++.|+.....+...+++...--.+...+
T Consensus 231 ~~ial~l~~Qk~a~~~~~av~~tTnell~~nAe~lk~~~~~iak~~~~~~vdiEtL~~~~~~li~ti~e~~~i~~e~~~~ 310 (333)
T PF05816_consen 231 LAIALALQRQKKALDAQQAVNDTTNELLRRNAEMLKQNSVEIAKEAERPVVDIETLKKAFQNLIETIEETDQIQEEGREK 310 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1739 GQMLLNKASQLSVNTTAKLKQLN 1761 (1807)
Q Consensus 1739 ~~~l~~~a~~l~~~~~~~~~~l~ 1761 (1807)
..+...++..+..++..++.+++
T Consensus 311 r~~~~~~l~~l~~~lk~~l~~~~ 333 (333)
T PF05816_consen 311 RAQAEQELEQLEEELKQRLIRMK 333 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
No 433
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=94.71 E-value=9.7 Score=43.18 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1613 VQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQ-ITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAM 1691 (1807)
Q Consensus 1613 l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~-ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~ 1691 (1807)
+.=+...-......+..+.+.+..-..+|..-+.++.. ....+..++..+.+-+..+..+..+|..++.-...-...-.
T Consensus 6 l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~ 85 (206)
T PF14988_consen 6 LEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQER 85 (206)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q psy2547 1692 DVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLN-----------KASQLSVNTTAKLKQL 1760 (1807)
Q Consensus 1692 ~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~-----------~a~~l~~~~~~~~~~l 1760 (1807)
++..--++....-.+....+.++..++-..+..++....+.......-..-.. .+..+.+-.....++.
T Consensus 86 eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN 165 (206)
T PF14988_consen 86 EIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKREN 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1761 NETEAMFNSQESELTELSKNIAELQKRIQSCINF 1794 (1807)
Q Consensus 1761 ~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~ 1794 (1807)
..|.+.+..+.++...+++....|+.+-..+..+
T Consensus 166 ~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 166 QQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=94.68 E-value=9.6 Score=44.29 Aligned_cols=213 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1578 IDTILTETAGDLAKANDLKR----KANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITN 1653 (1807)
Q Consensus 1578 ~~~~l~~~~~~l~~a~~L~~----~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~ 1653 (1807)
++..+..++.-+..++++.. ++.....-+..+.+-+.......................+......+-..-..+..
T Consensus 7 ~~~Ll~rlK~~~~~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~~h~~~a~ 86 (234)
T cd07652 7 LSTLLDRLKQSIASAKEFATFLKKRAAIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNGLRFAK 86 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHH
Q psy2547 1654 DLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSR--YQE--TDNKLLSKA 1729 (1807)
Q Consensus 1654 ~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~--l~~--~~~~l~~~~ 1729 (1807)
.+..+...|..+...++..++. ++..-......+.++...++.++.+.+.+-++++.++.. ... ...+.....
T Consensus 87 ~L~~~~~eL~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~ 163 (234)
T cd07652 87 ALNEMSDELSSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGNKSA 163 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccchhhH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy2547 1730 ESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSNNYKN 1804 (1807)
Q Consensus 1730 ~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~~Y~t 1804 (1807)
.+.++ +++.+++....++..+++..+.+..++-... .-.-+.+|..-+.+....|..+...|.+
T Consensus 164 ~~~Ee------~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~~~-----~p~i~~~lq~li~e~d~~l~~~~~~~~~ 227 (234)
T cd07652 164 AQHED------ELLRKVQAADQDYASKVNAAQALRQELLSRH-----RPEAVKDLFDLILEIDAALRLQYQKYAL 227 (234)
T ss_pred HHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhHHHHHHHHHHhh
No 435
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=94.68 E-value=2.3 Score=41.86 Aligned_cols=107 Identities=12% Similarity=0.159 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1603 KAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAG 1682 (1807)
Q Consensus 1603 ~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~ 1682 (1807)
+.+-..+...-.++...|...+..++..+..+.++..+.+.++..+..++.+.......+.+++.+|.++...++..+..
T Consensus 1 ~ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~a 80 (107)
T PF09304_consen 1 KEEKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQA 80 (107)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1683 FLQNGRSAMDVENEEKNLEKEVALAQK 1709 (1807)
Q Consensus 1683 l~~~~~~~~~a~~~ae~a~~~a~~ae~ 1709 (1807)
..+++.++...+......+-++.++..
T Consensus 81 k~~l~~r~~k~~~dka~lel~l~e~~~ 107 (107)
T PF09304_consen 81 KLELESRLLKAQKDKAILELKLAEAKD 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhcC
No 436
>KOG1655|consensus
Probab=94.68 E-value=2 Score=46.46 Aligned_cols=158 Identities=11% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1615 KIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQIT--NDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMD 1692 (1807)
Q Consensus 1615 ~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie--~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~ 1692 (1807)
.+...+..+.++.+.+++.|..+..+|...+.+|..+. .....++.+.-.+.++.+-.+.+.+.|..+.=... .+.-
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMe-Qa~~ 94 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNME-QANF 94 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1693 VENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQES 1772 (1807)
Q Consensus 1693 a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~ 1772 (1807)
+.+.+++....+..++.-.++++.+++.++ ..+++.|+.++..+.....+....|- +.+..-+-
T Consensus 95 t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvn-------------Id~IedlQDem~Dlmd~a~EiQE~Lg---r~y~~pei 158 (218)
T KOG1655|consen 95 TAESLKDTQATVAAMKDTNKEMKKQYKKVN-------------IDKIEDLQDEMEDLMDQADEIQEVLG---RNYNTPDI 158 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHh---hccCCCCc
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1773 ELTELSKNIAELQKRIQ 1789 (1807)
Q Consensus 1773 ~le~le~el~~L~~el~ 1789 (1807)
..+++.++|..|.++..
T Consensus 159 de~dL~aELdaL~~E~d 175 (218)
T KOG1655|consen 159 DEADLDAELDALGQELD 175 (218)
T ss_pred CHHHHHHHHHHHHhHhh
No 437
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=94.63 E-value=3.8 Score=46.39 Aligned_cols=176 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1600 NLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDI--------SAARKDLSQITNDLDDAQQKSNETNVKVKL 1671 (1807)
Q Consensus 1600 ~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i--------~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~ 1671 (1807)
......+......+...+..+.+....+..+++..+++-.+| ..+....+++...++.-+..+..-...|+.
T Consensus 14 ~~~~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~ 93 (204)
T PF10368_consen 14 KKPEEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEK 93 (204)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy2547 1672 LQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSV 1751 (1807)
Q Consensus 1672 l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~ 1751 (1807)
.+.+++.+...+..+... .++.+++.+...++..-.....+-..|..+-..=.+.-..+......+++|..+++.+.+
T Consensus 94 a~~e~~~~~~~i~ki~d~--~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~ 171 (204)
T PF10368_consen 94 AKEEFKKAKKYIDKIEDE--KLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQ 171 (204)
T ss_dssp HHHHHTT----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1752 NTTAKLKQLNETEAMFNSQESELTEL 1777 (1807)
Q Consensus 1752 ~~~~~~~~l~~Le~~i~~~e~~le~l 1777 (1807)
......+..+...+...+..+.-..+
T Consensus 172 ~y~~~~~~~~~fn~~t~~yN~~K~~~ 197 (204)
T PF10368_consen 172 SYKEVNKQKEKFNEYTKKYNEEKQDF 197 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 438
>PTZ00464 SNF-7-like protein; Provisional
Probab=94.63 E-value=2.7 Score=47.69 Aligned_cols=144 Identities=9% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1644 ARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSI--------QAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLR 1715 (1807)
Q Consensus 1644 ~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~l--------k~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~ 1715 (1807)
++..+..++..+..++.++..+..++...+..+... +..+...-.+-...+.+++.+......+++.+..++
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy2547 1716 SRYQETD--NKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNS-----QESELTELSKNIAELQKRI 1788 (1807)
Q Consensus 1716 ~~l~~~~--~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~-----~e~~le~le~el~~L~~el 1788 (1807)
......+ +.+......+......+ -.++++++..++.+.....+++...|.. ....-+++++||++|+.++
T Consensus 96 ~a~~~~~vv~amk~g~kaLK~~~k~i--~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~ 173 (211)
T PTZ00464 96 SVKDTKVQVDAMKQAAKTLKKQFKKL--NVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDM 173 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred H
Q psy2547 1789 Q 1789 (1807)
Q Consensus 1789 ~ 1789 (1807)
.
T Consensus 174 ~ 174 (211)
T PTZ00464 174 E 174 (211)
T ss_pred h
No 439
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=94.63 E-value=0.79 Score=52.70 Aligned_cols=173 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1598 KANLTKAGADSTKNTVQKIVDVLT--EARTAQDMAEVAIQTAKDDISAARKDLSQ--ITNDLDDAQQKSNETNVKVKLLQ 1673 (1807)
Q Consensus 1598 ~a~~a~~ea~~l~~~l~~l~~~L~--~a~~~~~~a~~~l~~a~~~i~~~~~~l~~--ie~~l~~~e~~l~~~e~~l~~l~ 1673 (1807)
....+++-++.+.++-+.+-.+|+ ..++.+.-++.+++++++.+.+++..|.. +..-.-+.+.+.+....-+..|+
T Consensus 150 ~p~eaq~Iaqailkqse~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le 229 (372)
T COG3524 150 DPKEAQKIAQAILKQSEKLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLE 229 (372)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1674 ERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNT 1753 (1807)
Q Consensus 1674 ~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~ 1753 (1807)
.+|-.++.++.+++..+....-++-.++.+++.+++++..-++++. .......+...-.+++.|.-+.+=..+.+
T Consensus 230 ~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~is-----ag~~~~sl~~qaAefq~l~lE~~fAekay 304 (372)
T COG3524 230 DELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAIS-----AGGSSQSLSNQAAEFQRLYLENTFAEKAY 304 (372)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhc-----CCCCccchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1754 TAKLKQLNETEAMFNSQESELT 1775 (1807)
Q Consensus 1754 ~~~~~~l~~Le~~i~~~e~~le 1775 (1807)
...+..++...-+-...+..|+
T Consensus 305 ~AAl~SlEsArieAdrqq~yL~ 326 (372)
T COG3524 305 AAALTSLESARIEADRQQLYLE 326 (372)
T ss_pred HHHHHHHHHHhhhhhhhhheee
No 440
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=94.61 E-value=11 Score=43.30 Aligned_cols=194 Identities=8% Similarity=0.022 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy2547 1575 LTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEAR--TAQDMAEVAIQTAKDDISAARKDLSQ-I 1651 (1807)
Q Consensus 1575 L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~--~~~~~a~~~l~~a~~~i~~~~~~l~~-i 1651 (1807)
+.+...-+..++..+..+......+...+.++.....++...-..|...+ ..+..+-..+.++...+..+..+... -
T Consensus 6 F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e 85 (216)
T cd07627 6 FIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQD 85 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1652 TNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNL-------EKEVALAQKQASGLRSRYQETDNK 1724 (1807)
Q Consensus 1652 e~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a-------~~~a~~ae~~l~el~~~l~~~~~~ 1724 (1807)
...+...-.....+...+..+-.+...+...+..+...+..++.+++.+ ..++..++.++.+++.....++..
T Consensus 86 ~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~ 165 (216)
T cd07627 86 VLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKE 165 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1725 LLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQ 1770 (1807)
Q Consensus 1725 l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~ 1770 (1807)
.+...+.+..-..+++ .+++..+...+..-....-+..+++-+.
T Consensus 166 ~e~is~~~k~El~rF~--~~r~~dfk~~l~~~~e~~ie~~k~~ie~ 209 (216)
T cd07627 166 FEEVSELIKSELERFE--RERVEDFRNSVEIYLESAIESQKELIEL 209 (216)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 441
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.59 E-value=9.7 Score=43.47 Aligned_cols=180 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-H
Q psy2547 1618 DVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKL----LQERLKSIQAGFLQNGRSAM-D 1692 (1807)
Q Consensus 1618 ~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~----l~~~le~lk~~l~~~~~~~~-~ 1692 (1807)
....+.+..++.++..+..+...+..+-+....+...+.++-..+..+...-.. +..-+..+-.-+........ .
T Consensus 4 ~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (218)
T cd07596 4 QEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQ 83 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1693 VENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQES 1772 (1807)
Q Consensus 1693 a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~ 1772 (1807)
+......+...+.+...-+..+++-+......+.+ +..+...+.....++.++...-.....++..++.+|...+.
T Consensus 84 ~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~----~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~ 159 (218)
T cd07596 84 ANQELVKLLEPLKEYLRYCQAVKETLDDRADALLT----LQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAES 159 (218)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2547 1773 ELTELSKNIAELQKRIQSCINFIVDKSNN 1801 (1807)
Q Consensus 1773 ~le~le~el~~L~~el~~l~~~I~~~~~~ 1801 (1807)
+++.+..+.......+..=..........
T Consensus 160 ~~~~~~~~~~~i~~~~~~El~~f~~~~~~ 188 (218)
T cd07596 160 ALEEARKRYEEISERLKEELKRFHEERAR 188 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=94.58 E-value=0.0096 Score=62.93 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1596 KRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQER 1675 (1807)
Q Consensus 1596 ~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~ 1675 (1807)
+..|..+...+..+.+.+..+...+......+..+...+++....+..+.+.+..+...+..++..+..+..+++.++..
T Consensus 2 k~~a~~A~~~a~~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~ 81 (138)
T PF06009_consen 2 KEMADEANETAANVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENL 81 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1676 LKS---IQAGFLQNGRSAMDVENEEKNLE 1701 (1807)
Q Consensus 1676 le~---lk~~l~~~~~~~~~a~~~ae~a~ 1701 (1807)
... +...+.++++++.+++..+..++
T Consensus 82 ~~~~~~ls~nI~~IrelI~qAR~~An~Ik 110 (138)
T PF06009_consen 82 SENNSNLSRNISRIRELIAQARDAANRIK 110 (138)
T ss_dssp -----------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhee
No 443
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.58 E-value=1.1 Score=51.29 Aligned_cols=102 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1589 LAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVK 1668 (1807)
Q Consensus 1589 l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~ 1668 (1807)
+.+++.-..+.+.++.++.+....++....-|.+.+...+.+..+-....++|+.+..+|+.++..+..++...+.....
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-H
Q psy2547 1669 VKLLQERLKSIQAGFLQNGRS-A 1690 (1807)
Q Consensus 1669 l~~l~~~le~lk~~l~~~~~~-~ 1690 (1807)
+..+..++..++..+.+++.. +
T Consensus 83 i~r~~eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
No 444
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=94.58 E-value=10 Score=42.83 Aligned_cols=207 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1578 IDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDD 1657 (1807)
Q Consensus 1578 ~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~ 1657 (1807)
.+.++..++...--.+++...+.++...+..+.......-..+..+-+.-.....+-+++-.-|..+-..-.+++..++.
T Consensus 10 ~q~~~~d~k~s~P~~~d~v~ka~K~~saL~a~~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~ 89 (231)
T cd07643 10 FQAIINDMKGSYPLWEDFVSKATKLHSQLRATIVATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQ 89 (231)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy2547 1658 AQQKSNETNVKVKLLQERLKSIQAGFLQNGRS----AMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSG 1733 (1807)
Q Consensus 1658 ~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~----~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~ 1733 (1807)
.-+.| +..-|..|++++++.++.+.++... .+.++.++..+......++++...-. ..+..++......+.
T Consensus 90 f~~~L--~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rKg~---~~~~~~ldsa~~dvn 164 (231)
T cd07643 90 FTSAL--MDCLVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGK---GDLQPQLDSAMQDVN 164 (231)
T ss_pred HHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccC---CccchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1734 LKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1734 ~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l 1791 (1807)
.....+++++.+ .+..-+-+...+.-..-..+.--...--.+..|+.-|+.-++.+
T Consensus 165 ~k~~~lEe~ek~--alR~aLiEER~Rfc~Fvs~l~pVl~~e~~ml~E~~hl~~~~~~l 220 (231)
T cd07643 165 DKYLLLEETEKK--AVRNALIEERGRFCTFVSFLKPVLDEEISMLGEVTHLQTIMEDL 220 (231)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHH
No 445
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=94.54 E-value=12 Score=43.35 Aligned_cols=221 Identities=9% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q psy2547 1561 IRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVA--IQTAK 1638 (1807)
Q Consensus 1561 I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~--l~~a~ 1638 (1807)
+..+.+.+......+.+.+.-+.+.+..++..+.-++++...-..+..-..++.........+-..+...+.. +..+-
T Consensus 3 ~~~~~d~~~~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~al 82 (234)
T cd07665 3 FNKATDAVSKMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRAL 82 (234)
T ss_pred hhHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1639 DDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRY 1718 (1807)
Q Consensus 1639 ~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l 1718 (1807)
..+.++..+|..+.++. +.+.+-.+..-|++.-.-|..++.-+.+-.........--.++..+ +..+..+....
T Consensus 83 s~laev~~~i~~~~~~q--a~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kK----r~~~~Kl~~~~ 156 (234)
T cd07665 83 SQLAEVEEKIEQLHQEQ--ANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKK----REAEARLLWAN 156 (234)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcC
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1719 QETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSC 1791 (1807)
Q Consensus 1719 ~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l 1791 (1807)
+ .+++.+...++.++..++.+.+.+-+...+.+...+.+.+ .+++.+....+..+.+..-+.++++.++
T Consensus 157 ~--~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe--~er~~Dfk~~v~~fles~ie~qke~ie~ 225 (234)
T cd07665 157 K--PDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFE--KEKSKDFKNHIIKYLETLLHSQQQLVKY 225 (234)
T ss_pred C--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 446
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.53 E-value=13 Score=43.95 Aligned_cols=220 Identities=7% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1578 IDTILTETAGDLAKANDLKR----KANLTKAGADSTKNTVQKIVDVLT--EARTAQDMAEVAIQTAKDDISAARKDLSQI 1651 (1807)
Q Consensus 1578 ~~~~l~~~~~~l~~a~~L~~----~a~~a~~ea~~l~~~l~~l~~~L~--~a~~~~~~a~~~l~~a~~~i~~~~~~l~~i 1651 (1807)
.+.++..++.-+...+++.. ++...+.-+..|.+-+........ ........+......+...=..+...|..+
T Consensus 7 ~~~L~~r~k~g~~~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~~~ 86 (261)
T cd07648 7 FDVLYHNMKHGQIAVKELADFLRERATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLSELHLQLVQKLQEL 86 (261)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1652 TNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAES 1731 (1807)
Q Consensus 1652 e~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~ 1731 (1807)
...+......+....+.+.+.......+...+......+..++.....+-.+++.++.... ...+++.++.++....+.
T Consensus 87 ~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~-s~k~~eK~~~K~~ka~~~ 165 (261)
T cd07648 87 IKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENA-SPKEIEKAEAKLKKAQDE 165 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2547 1732 SGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSN 1800 (1807)
Q Consensus 1732 l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~ 1800 (1807)
.......+..+..+-.......-+..++++ +..|..+..-|..+..-+...-..+....+.|...++
T Consensus 166 Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lE--e~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~ 232 (261)
T cd07648 166 YKALVEKYNNIRADFETKMTDSCKRFQEIE--ESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVD 232 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
No 447
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=94.52 E-value=0.059 Score=63.50 Aligned_cols=150 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1556 SNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQ 1635 (1807)
Q Consensus 1556 ~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~ 1635 (1807)
..|.|=++...-|..+-..+......|..+.+. ...|....+.+...+..+...+.+++.+|+.....+...+..|.
T Consensus 4 Lsp~QRREVV~LILslTss~s~s~GDLs~I~eR---LsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~ 80 (326)
T PF04582_consen 4 LSPSQRREVVGLILSLTSSISTSPGDLSPIRER---LSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELN 80 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHhhhcccCCCCCCcccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1636 TAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQ 1708 (1807)
Q Consensus 1636 ~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae 1708 (1807)
.+...|..++..|..+...+..+...+......|..|+..+..++..+..++..+....-.+.+++.+++.+|
T Consensus 81 sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 81 SLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
No 448
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=94.48 E-value=17 Score=45.09 Aligned_cols=303 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCCCChHHHHHHhHHh-hhhccCCCHHHH
Q psy2547 1486 ITTAKQESHAANIL-AKEAYDHAASVRNKTAAY--VASTSNITKQLDEFLNAPGATLADIRNISGLA-VNKNIQSNPEQI 1561 (1807)
Q Consensus 1486 ~~~~~~~~~~a~~~-A~~~~~~a~~~~~~~e~~--~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~v-l~~~i~~~~~~I 1561 (1807)
+.++...|++-+++ .....+.+..+...+... ...+=..+..++.-+..... ...|......- +...+..+++.+
T Consensus 4 V~ea~S~YsE~ka~lvr~e~~~~e~a~~~~~~~L~~lnLP~sL~~l~~~~~~~~~-~~~i~~~~g~~~~~~~~~~l~~l~ 82 (356)
T cd09237 4 VHEKESLYSEEKAKLLRAEVERVEVANEEYASFLEYLNLPKLLVDLKERFEGENE-LMEIVSGLKSSSVDSQLELLRPQS 82 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHhhhcCCchh-HHHHHHhccCCCcchhHHHhHHHH
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1562 RERANEINNVIKSLTDIDTILTETAGDLAK----------ANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAE 1631 (1807)
Q Consensus 1562 ~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~----------a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~ 1631 (1807)
....+.|.+....|+.-......+..+... ...+..++.+++.-+.+..+.=..+...++..+..++.+.
T Consensus 83 ~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~Wtr~~S~~~~~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~ 162 (356)
T cd09237 83 ASWVNEIDSSYNDLDEEMKEIEKMRKKILAKWTQSPSSSLTASLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALLL 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHc
Q ss_pred HHHHHHHH--------------------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2547 1632 VAIQTAKD--------------------D----ISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQN- 1686 (1807)
Q Consensus 1632 ~~l~~a~~--------------------~----i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~- 1686 (1807)
.....+.. + +...-..|..+-++++.++.+-..+..++++....-+-...-+...
T Consensus 163 ~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~DDI~~~ll~~~~ 242 (356)
T cd09237 163 NGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHNDDISDILILNSK 242 (356)
T ss_pred CChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1687 ------GRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQL 1760 (1807)
Q Consensus 1687 ------~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l 1760 (1807)
+..+.+-.+..+-...++.....+-+.+..++..+.+.+.+ ...+.....+......+.+.+.+.+.......
T Consensus 243 ~~~~~~e~lF~~eL~kf~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~-~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y 321 (356)
T cd09237 243 SKSEIEKQLFPEELEKFKPLQNRLEATIFKQSSLINELKIELDKLFK-LPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSF 321 (356)
T ss_pred cccchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1761 NETEAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1761 ~~Le~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
.++...+.+-.+=+.++...+..+.+++..
T Consensus 322 ~el~~~l~~G~~FY~dL~~~~~~l~~~~~~ 351 (356)
T cd09237 322 KKFSAGLPKGLEFYDDLLKMAKDLAKNVQA 351 (356)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHH
No 449
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=94.48 E-value=2.6 Score=49.05 Aligned_cols=138 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1646 KDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKL 1725 (1807)
Q Consensus 1646 ~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l 1725 (1807)
++|..+-..-+.+...++.+......+.+.|..+-.. ....+.++..++..+..++.+++..+..-.+++...-+.+
T Consensus 57 r~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~---edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~I 133 (271)
T PF13805_consen 57 RKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQ---EDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSI 133 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1726 LSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKR 1787 (1807)
Q Consensus 1726 ~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~e 1787 (1807)
...++.+...+.+.+.+..++.+|+.+ +....+|..|+.+|...+.+....+++|..+..+
T Consensus 134 R~~E~sl~p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 134 RNREESLQPSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
No 450
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=94.46 E-value=3.1 Score=44.53 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHH
Q psy2547 1501 KEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDT 1580 (1807)
Q Consensus 1501 ~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~ 1580 (1807)
++.+.+........-.......++.+-+...++..-.-...+....+..++.-...+.++|.+++..+-++..+|++++.
T Consensus 14 Kdmy~aTE~~wak~~~q~m~TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee 93 (189)
T TIGR02132 14 KDAYDKTESFWGKAIGDNIKREEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEE 93 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy2547 1581 ILTETAGDLA----KANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQT-AKDDISAARKDLSQITNDL 1655 (1807)
Q Consensus 1581 ~l~~~~~~l~----~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~-a~~~i~~~~~~l~~ie~~l 1655 (1807)
.+.+.-..+. .+-.+.++...++.++..+...++.+.+.|+.-...+++++..|+. +...-..++..+-+-++.+
T Consensus 94 ~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (189)
T TIGR02132 94 FFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQIKTQGEQLQAQLLEKQEAL 173 (189)
T ss_pred HHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q ss_pred HH
Q psy2547 1656 DD 1657 (1807)
Q Consensus 1656 ~~ 1657 (1807)
..
T Consensus 174 ~~ 175 (189)
T TIGR02132 174 AA 175 (189)
T ss_pred HH
No 451
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=94.45 E-value=3.3 Score=45.89 Aligned_cols=172 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1617 VDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDA---------QQKSNETNVKVKLLQERLKSIQAGFLQNG 1687 (1807)
Q Consensus 1617 ~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~---------e~~l~~~e~~l~~l~~~le~lk~~l~~~~ 1687 (1807)
+..|+.....+.....-+..++.++...++...+++..+... ...-......|+++-.+|++-+.+...+.
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~ 80 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELA 80 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1688 RSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLL-NKASQLSVNTTAKLKQLNETEAM 1766 (1807)
Q Consensus 1688 ~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~-~~a~~l~~~~~~~~~~l~~Le~~ 1766 (1807)
+.-..+.++++.+...-+.|..++..+..++..+...+..+......-...+.... .+-..+. ..-+++..+...
T Consensus 81 qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll----~LWr~v~~lRr~ 156 (182)
T PF15035_consen 81 QVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLL----SLWREVVALRRQ 156 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHH----HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1767 FNSQESELTELSKNIAELQKRIQSCINFI 1795 (1807)
Q Consensus 1767 i~~~e~~le~le~el~~L~~el~~l~~~I 1795 (1807)
+.++...-+ .+|..+..++......+
T Consensus 157 f~elr~~Te---rdL~~~r~e~~r~~r~~ 182 (182)
T PF15035_consen 157 FAELRTATE---RDLSDMRAEFARTSRSV 182 (182)
T ss_pred HHHHHHHHH---hhHHHHHHHHHHHHccC
No 452
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=94.45 E-value=2.3 Score=52.18 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy2547 1609 TKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQN-- 1686 (1807)
Q Consensus 1609 l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~-- 1686 (1807)
....+..++.++..++..+..+...+...+.....++..+...+.++..++..+..++.++...+.+++..+.-+.+-
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~i 132 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAV 132 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1687 -GRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAE-----SSGLKRARGQMLLNKASQLSVNTT 1754 (1807)
Q Consensus 1687 -~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~-----~l~~~~~r~~~l~~~a~~l~~~~~ 1754 (1807)
+..+++++.++..++..++.++..+. ..+...+..+..... ++.....+++.++.+++.....+.
T Consensus 133 S~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 133 SASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 453
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=94.45 E-value=0.69 Score=55.78 Aligned_cols=212 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHH
Q psy2547 1554 IQSNPEQIRERANEINNVIKSLT------DIDTILTETAGDLAKANDLKRKANLTKA--GADSTKNTVQKIVDVLTEART 1625 (1807)
Q Consensus 1554 i~~~~~~I~~l~~~i~~~~~~L~------~~~~~l~~~~~~l~~a~~L~~~a~~a~~--ea~~l~~~l~~l~~~L~~a~~ 1625 (1807)
|.....-+..|...++...-.+. ++...+.-...+++..+.|.++..---+ .-.++...++.+..-+..++-
T Consensus 504 ived~A~~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~lireltssvk~g~drEV~~~A~~~~~~~eRLkm 583 (790)
T PF07794_consen 504 IVEDEAGLANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTLIRELTSSVKAGQDREVSFQAEGIVPGIERLKM 583 (790)
T ss_pred cchhhhHHHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHHHHhhcccccCCccceeecccccccchhhhhhe
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1626 AQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVA 1705 (1807)
Q Consensus 1626 ~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~ 1705 (1807)
.+...+.--+.....|.-.+.+|..++..+..+.++++.++++.+++.+++-+|-...+..++.+.+++.++..+-.+
T Consensus 584 Elst~kDlekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~k-- 661 (790)
T PF07794_consen 584 ELSTSKDLEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSK-- 661 (790)
T ss_pred eeccccchhhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1706 LAQKQASGLRSRYQETDN--KLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQE 1771 (1807)
Q Consensus 1706 ~ae~~l~el~~~l~~~~~--~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e 1771 (1807)
.+.-+++++...++ .++...++++....-++++.+.+-++..+......+|.+++...+..+
T Consensus 662 ----lLagiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~ck~ke 725 (790)
T PF07794_consen 662 ----LLAGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEARCKSKE 725 (790)
T ss_pred ----HHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhhhhhcc
No 454
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=94.38 E-value=5.4 Score=54.22 Aligned_cols=303 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccC
Q psy2547 1482 VFRGITTAKQESHAANILAKEAYDHAASVRNKTAAY------VASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQ 1555 (1807)
Q Consensus 1482 l~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e~~------~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~ 1555 (1807)
+...+.+....+.-...+...+......+...-+.. +..++..+..|. .....+.+..+++.++.+.+-
T Consensus 387 lArAvieqRr~L~~~~~~~~~v~~~L~al~~~Pe~~~~~~~~yL~Lr~a~~rL~-----~~~~~~~~~~v~~~LW~lAl~ 461 (820)
T PF13779_consen 387 LARAVIEQRRDLALDPENRPRVAQALDALSHRPEDFFPDPGHYLGLRSARRRLE-----RARTDEALREVADLLWDLALR 461 (820)
T ss_pred HHHHHHHHHHHHHhCccccHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHH
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1556 SNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQ 1635 (1807)
Q Consensus 1556 ~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~ 1635 (1807)
+-..++......|+.+...|.++-..=..-++..+..++|++-+++.-.++.+-...-......-..-........+.|+
T Consensus 462 iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~ 541 (820)
T PF13779_consen 462 IEDGDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQ 541 (820)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHH
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy2547 1636 TAKDDISAARK--DLSQITNDLDDAQQKSNETN------VKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEK----- 1702 (1807)
Q Consensus 1636 ~a~~~i~~~~~--~l~~ie~~l~~~e~~l~~~e------~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~----- 1702 (1807)
..-+.|+++.+ ..++.++.+++++.-++++. ..-.++++.+++|.+.+.+.+..+++......+-..
T Consensus 542 ~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~~~~q~~~~~~~~q~m~~L~dl~r~Qq~L~D~tfr~~q~q~~~q~~~ 621 (820)
T PF13779_consen 542 RMMDRIEELARSGRMDEARQLLEQLQQMMENMQNAQPQQQQQQEMQQAMEELGDLLRRQQQLMDETFRQLQEQQNAQQGQ 621 (820)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC
Q ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHH
Q psy2547 1703 -----------------------------EVALAQKQASGLRSRYQETDNKLLSKAESSGLKRAR----GQMLLNKASQL 1749 (1807)
Q Consensus 1703 -----------------------------~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r----~~~l~~~a~~l 1749 (1807)
.....+.....+.+....+..+++.....+.....+ ...-..++...
T Consensus 622 q~~~~~~~~~g~~q~gq~~~q~~~~~~~~~~~~~~~~~~~l~~~Q~~l~~~L~~~~~~l~~~g~~~g~~~~~~l~~A~~a 701 (820)
T PF13779_consen 622 QQGQQGQGQQGQGQPGQQQGQGQGQQQGQQGQGGQEQQQSLAERQQALRQELQRLQDELPGQGGEAGGQAPDALGEAEEA 701 (820)
T ss_pred CcccccCCCCCcCCCCccccccccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccCcchhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1750 SVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1750 ~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
.++.++.+.+ -++...+....+.|+.+.+=..++.++|..
T Consensus 702 M~~A~~aL~~-g~~~~Av~~Q~~AleaLr~G~q~m~e~m~~ 741 (820)
T PF13779_consen 702 MRDAEEALGQ-GDLDGAVDAQGRALEALREGAQQMAEAMQQ 741 (820)
T ss_pred HHHHHHHHhC-CChhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 455
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=94.35 E-value=16 Score=43.97 Aligned_cols=382 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhccCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q psy2547 1242 VMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQRINLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAH 1321 (1807)
Q Consensus 1242 ~l~~~l~~l~~~l~~~~~l~~~e~~l~~~~~~~~~~~~~le~L~~el~~l~~~~~~l~~~~~~l~~~~~~~a~~~~~~a~ 1321 (1807)
.+.+.++.++.-| -.+.+.|..+.++.....+.+..|+.+-.-+.+.++.-+++... ++..-
T Consensus 108 Di~~~l~gvnSGL------vrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeE------------LEgyC 169 (558)
T PF15358_consen 108 DITELLEGVNSGL------VRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEE------------LEGYC 169 (558)
T ss_pred cHHHHHhhhcccc------eecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHH------------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhcccchhHHHhhccCCCCC-C
Q psy2547 1322 DTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELICDKRGDPC-D 1400 (1807)
Q Consensus 1322 ~~~~~a~~~~~~~~~~i~~a~~~~~~a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~~l~~~L~~l~~~icg~~~~~C-~ 1400 (1807)
.++++.=+++...........+.++....+|+....-+..+.+. +....-+..+.+|+.++-.+..... +
T Consensus 170 sqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqd---------E~prrqe~e~qELeqkleagls~~~l~ 240 (558)
T PF15358_consen 170 SQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQD---------ETPRRQEAEWQELEQKLEAGLSRSGLP 240 (558)
T ss_pred HHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcc---------cCcchhhhhHHHHHHHHhhhhhhcCCC
Q ss_pred CCCCCCCCC------------------CCCCcccCCchhHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHh-hhhhhh
Q psy2547 1401 NLCGGAGCG------------------KCGGMWCSNGTLSESNSAKDYAETSKKLINEKESKAEELRKHMIIL-SESNSA 1461 (1807)
Q Consensus 1401 ~~Cgg~~C~------------------~Cgg~~C~~~a~~~a~~A~~~a~~l~~~i~e~~~~~eeL~~~~~~~-~~~~~a 1461 (1807)
..|...||. .+|+. ..|-....--++.+.....-+++|++.+..+ ...-+.
T Consensus 241 p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~----------~rage~~~~seq~lqk~~s~LEelRrevssLtarw~qE 310 (558)
T PF15358_consen 241 PTADSTGCPGPPGSPEEPPRPRNLAPAGWGGG----------PRAGEGPELSEQELQKVSSGLEELRREVSSLTARWHQE 310 (558)
T ss_pred ccccCCCCCCCCCCCCCCCCcccccccccccC----------CCCCCCccccHHhhcccCccHHHHHHHHHHHhhHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHH
Q psy2547 1462 KDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLAD 1541 (1807)
Q Consensus 1462 ~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~ 1541 (1807)
....+++...+-.+.-+++..+-+...++.+-.++-..+++++.++.++-.-++.+...+..+..++..+-...+...+-
T Consensus 311 ega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~versavs~asLrseLeglgpvKPilEel 390 (558)
T PF15358_consen 311 EGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERSAVSVASLRSELEGLGPVKPILEEL 390 (558)
T ss_pred HhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhHHHHHHHHhhcccCcchHHHHH
Q ss_pred HHHHhHHhhhhccCCC------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH
Q psy2547 1542 IRNISGLAVNKNIQSN------------PEQIRERANEINNVIKSLTDIDTILTETAGDLAK---------ANDLKRKAN 1600 (1807)
Q Consensus 1542 i~~la~~vl~~~i~~~------------~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~---------a~~L~~~a~ 1600 (1807)
-..+.+.-...+++.. ..+-+.+..+..+.+ ++..+.-+.+++.. -+.|.+++-
T Consensus 391 ~Rq~~~~rrg~d~~~~ldr~~~gsCarC~sqgqqlstesLqql-----lerAltplvdevkqr~l~pacpscQrlhkkil 465 (558)
T PF15358_consen 391 GRQLQNSRRGPDLSMNLDRSPQGSCARCASQGQQLSTESLQQL-----LERALTPLVDEVKQRGLPPACPSCQRLHKKIL 465 (558)
T ss_pred HHHHHhhccCCccccCCCcCCCCchHhHhhhhhhcCHHHHHHH-----HHHHhHHHHHHHHhcCCCCCChHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1601 LTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNET 1665 (1807)
Q Consensus 1601 ~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~ 1665 (1807)
+++.+|-..--.++.+...+.-|++..-.++.-+..-.-.-++--..++=+..+.-.+-.+|..+
T Consensus 466 elerqalakhvraealsstlrlaqdealraknllltdkmkpeek~a~ldylhlkmcslhdqls~l 530 (558)
T PF15358_consen 466 ELERQALAKHVRAEALSSTLRLAQDEALRAKNLLLTDKMKPEEKVATLDYLHLKMCSLHDQLSNL 530 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhcCCcHHHHhHHHHHHHHhhhHHHHHhcC
No 456
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=94.32 E-value=2.1 Score=52.55 Aligned_cols=145 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1652 TNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAES 1731 (1807)
Q Consensus 1652 e~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~ 1731 (1807)
...+..++.++..+..++..+...++..+.........+..+..+++.++..+..++..++..+.+++..+...+...-.
T Consensus 54 ~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS 133 (327)
T TIGR02971 54 TAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVS 133 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1732 SGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQES-----ELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1732 l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~-----~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
..+.......+......+..........+..+..++..... +++..+.++..++.+++.....+.
T Consensus 134 ~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 134 ASDLDSKALKLRTAEEELEEALASRSEQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 457
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.32 E-value=14 Score=43.23 Aligned_cols=229 Identities=10% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1559 EQIRERANEINNVIKSLTDIDTILTETAGDLAK-ANDLKRKANLT--------KAGADSTKNTVQKIVDVLTEARTAQDM 1629 (1807)
Q Consensus 1559 ~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~-a~~L~~~a~~a--------~~ea~~l~~~l~~l~~~L~~a~~~~~~ 1629 (1807)
++++.+...+.+-+.-++++..-+.+....-.. +..|..-+... ....-..-.....+..++++.-.+.+.
T Consensus 5 Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q~e~ 84 (252)
T cd07675 5 DQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQREV 84 (252)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1630 AEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQK 1709 (1807)
Q Consensus 1630 a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~ 1709 (1807)
+.+.+.. .-+..+.....+++.+....-.....++..++.....|+..+..+...-..++.+....+.+.......+.
T Consensus 85 ~a~~l~~--~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~ 162 (252)
T cd07675 85 VAEEMGH--RVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKS 162 (252)
T ss_pred HHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1710 QASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQ 1789 (1807)
Q Consensus 1710 ~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~ 1789 (1807)
.++.+++++.......+..+.........+..++.+ -+.+.+...+..++++++ .-...+.++-.....++..+-
T Consensus 163 ~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k--~Y~e~mP~vfd~lQ~leE---~Ri~~l~e~~~~~~~~E~~v~ 237 (252)
T cd07675 163 DVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHK--HFYIVIPQIYKQLQEMDE---RRTVKLSECYRGFADSERKVI 237 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHH
Q psy2547 1790 SCINF 1794 (1807)
Q Consensus 1790 ~l~~~ 1794 (1807)
.++..
T Consensus 238 ~~i~~ 242 (252)
T cd07675 238 PIISK 242 (252)
T ss_pred HHHHH
No 458
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=94.31 E-value=23 Score=45.85 Aligned_cols=288 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhh
Q psy2547 1497 NILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLT 1576 (1807)
Q Consensus 1497 ~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~ 1576 (1807)
++++.+++.++.++...+ ++.++..+.++-.........+..+.+....+.-......-.+...+..++...-.
T Consensus 154 KeqiL~ly~niT~v~~~l------le~~l~~~~~~~~~~~~~~~~l~~l~~~~n~i~e~~~~~~~~~v~~e~~~i~~~~n 227 (544)
T PF04163_consen 154 KEQILELYQNITEVYSQL------LEALLNHLMDFEEEQEQQNQFLDKLDDMFNQILELRNKDESNRVFQENLDISMFRN 227 (544)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy2547 1577 DIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIV-DVLTEARTAQD-MAEVAIQTAKDDISAARKDLSQ-ITN 1653 (1807)
Q Consensus 1577 ~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~-~~L~~a~~~~~-~a~~~l~~a~~~i~~~~~~l~~-ie~ 1653 (1807)
.........+...+..+.+..++..+...+.+..+++..+. ..+++....+. ..+.++..+..-..+....+++ ++.
T Consensus 228 ~q~es~v~q~~i~et~~ql~~~I~e~~s~i~~~i~ev~~~~~~li~~ln~eL~se~ei~LsaI~~l~~e~~~~le~~~k~ 307 (544)
T PF04163_consen 228 SQQESMVNQKVILETSKQLKSEINESNSQISNTIEEVSQISNDLIEKLNEELTSENEIALSAINDLTDESSSQLEQGMKN 307 (544)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1654 DLDDAQQ-KSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESS 1732 (1807)
Q Consensus 1654 ~l~~~e~-~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l 1732 (1807)
.++.++. -.+..+...+-+......++.....+.+.+..+.+.+.+.++ ..+.+.+......+++....+ ...+.+
T Consensus 308 Lve~s~d~L~~~~~~~~elvns~~Qkl~~~~~~lke~L~~ls~~l~~sQn--~~a~~il~~~~~~l~~sl~~s-~~~el~ 384 (544)
T PF04163_consen 308 LVEMSNDSLSESMESNNELVNSGFQKLEDLTSQLKEQLQSLSRKLSQSQN--LEASQILQQFNSILNESLEPS-LVDELL 384 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHH-HHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHH
Q psy2547 1733 GLKRARGQMLLNKASQLSVNTTAKLKQL-NETEAMFNSQE-SELTELSKNIAEL-QKRIQSCIN 1793 (1807)
Q Consensus 1733 ~~~~~r~~~l~~~a~~l~~~~~~~~~~l-~~Le~~i~~~e-~~le~le~el~~L-~~el~~l~~ 1793 (1807)
-....-...+.++...+...+.....-. ..+...++... ..+....++|..+ +..+..+..
T Consensus 385 p~l~~~~~~ll~~~~~~~s~l~~~f~~w~~~i~~tf~~i~~~~l~~t~~ki~~~~~~~~~~~~~ 448 (544)
T PF04163_consen 385 PSLTNFKNQLLQEWTMMTSNLNSDFALWNREIFSTFESISMKKLNITKDKIDDLGSLSISFIHI 448 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>KOG0972|consensus
Probab=94.28 E-value=3.8 Score=46.86 Aligned_cols=173 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1611 NTVQKIVDVLTEARTAQDMAEVAIQTAK----DDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQN 1686 (1807)
Q Consensus 1611 ~~l~~l~~~L~~a~~~~~~a~~~l~~a~----~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~ 1686 (1807)
+..+.+.+.-..+.+=..+.+..+-+++ .+.++-+-.+++.......++.++.++...|+.|- .++...++.+
T Consensus 188 N~~~~vl~s~tDa~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh---~eit~~LEkI 264 (384)
T KOG0972|consen 188 NPLQSVLQSNTDAIEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLH---KEITKALEKI 264 (384)
T ss_pred ChHHHHHhhcchHHHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH---HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy2547 1687 GRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKL---KQLNET 1763 (1807)
Q Consensus 1687 ~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~---~~l~~L 1763 (1807)
..+-+.+..+++.+..+...|..++.+++.++++...-++...+.+.+...++++++++++.-- .++ .-+..+
T Consensus 265 ~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G----~~msDGaplvkI 340 (384)
T KOG0972|consen 265 ASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQG----AKMSDGAPLVKI 340 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccCCchHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1764 EAMFNSQESELTELSKNIAELQKRIQS 1790 (1807)
Q Consensus 1764 e~~i~~~e~~le~le~el~~L~~el~~ 1790 (1807)
.+.+.+++++...+.-+|.-++..+.+
T Consensus 341 kqavsKLk~et~~mnv~igv~ehs~lq 367 (384)
T KOG0972|consen 341 KQAVSKLKEETQTMNVQIGVFEHSILQ 367 (384)
T ss_pred HHHHHHHHHHHHhhhhheehhhHHHHH
No 460
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=94.26 E-value=2 Score=53.64 Aligned_cols=167 Identities=11% Similarity=-0.028 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy2547 1577 DIDTILTETAGDLAKANDLKRKANLTKA--GADSTKNTVQKIVDVLTEARTAQDMAEVA--IQTAKDDISAARKDLSQIT 1652 (1807)
Q Consensus 1577 ~~~~~l~~~~~~l~~a~~L~~~a~~a~~--ea~~l~~~l~~l~~~L~~a~~~~~~a~~~--l~~a~~~i~~~~~~l~~ie 1652 (1807)
+.+....-.+..+..++.+.+++..-.. .+.-++.+++..++.+.+++.++...++. +=+-+.+...+..-|..++
T Consensus 213 ~PedA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le 292 (434)
T PRK15178 213 SAKQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFE 292 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1653 NDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLE--KEVALAQKQASGLRSRYQETDNKLLSKAE 1730 (1807)
Q Consensus 1653 ~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~--~~a~~ae~~l~el~~~l~~~~~~l~~~~~ 1730 (1807)
.++.+++.+|..+...+..-.-++..++.++..++..+...+.++.... ......-.+++.|.-+.+-.++.+.....
T Consensus 293 ~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAla 372 (434)
T PRK15178 293 TQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQ 372 (434)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHH
Q psy2547 1731 SSGLKRARGQMLL 1743 (1807)
Q Consensus 1731 ~l~~~~~r~~~l~ 1743 (1807)
.++.++.++....
T Consensus 373 aLE~AR~EA~RQ~ 385 (434)
T PRK15178 373 TLQQGKLQALRER 385 (434)
T ss_pred HHHHHHHHHHhhh
No 461
>KOG4637|consensus
Probab=94.26 E-value=6.2 Score=46.79 Aligned_cols=151 Identities=11% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy2547 1648 LSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQET------ 1721 (1807)
Q Consensus 1648 l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~------ 1721 (1807)
+..+-.++..--..+.+.+..++.+.+......++++..+..+..+.+..+.++.+....+.-.++-.+.+.+.
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~ 213 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGN 213 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCc
Q ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1722 -DNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQL----NETEAMFNSQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1722 -~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l----~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
+..+..........+.++.++.....++++++..+.+.+ +.-..++-.+.+++.++..++..|.+.....+..+.
T Consensus 214 ~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~~~d~y~~~l~ 293 (464)
T KOG4637|consen 214 SEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQALRSNSENRLCELMELDKAMNSLKPDLIQLRKIRDQYLVWLM 293 (464)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH
Q ss_pred hh
Q psy2547 1797 DK 1798 (1807)
Q Consensus 1797 ~~ 1798 (1807)
.+
T Consensus 294 ~~ 295 (464)
T KOG4637|consen 294 IK 295 (464)
T ss_pred hc
No 462
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=94.23 E-value=13 Score=49.44 Aligned_cols=229 Identities=10% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy2547 1565 ANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQT-AKDDISA 1643 (1807)
Q Consensus 1565 ~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~-a~~~i~~ 1643 (1807)
......+...+......-............+...++............+..+...+..+...+..++...++ ++..|+.
T Consensus 205 a~~~~~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~ 284 (582)
T PF09731_consen 205 AQSLPKIVEEYKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEE 284 (582)
T ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-HHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1644 ARKD-LSQITNDLD-DAQQKSNETNVKVKL-LQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQE 1720 (1807)
Q Consensus 1644 ~~~~-l~~ie~~l~-~~e~~l~~~e~~l~~-l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~ 1720 (1807)
...+ ++.+..++. .++..+...+.++.. ++..+..++..+.+.-+.--+.+.++-..+.+-....+.++..++-.+.
T Consensus 285 q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~ 364 (582)
T PF09731_consen 285 QREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKE 364 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy2547 1721 TDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKL---KQLNETEAMFNSQESELTELSKNI-AELQKRIQSCIN 1793 (1807)
Q Consensus 1721 ~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~---~~l~~Le~~i~~~e~~le~le~el-~~L~~el~~l~~ 1793 (1807)
++.++.+...........+..-.+.++.+........ .+++.|...+..+...|..-.... .-+..+|..+..
T Consensus 365 i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~ 441 (582)
T PF09731_consen 365 IKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKE 441 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHH
No 463
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=94.20 E-value=0.93 Score=46.65 Aligned_cols=87 Identities=16% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1635 QTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGL 1714 (1807)
Q Consensus 1635 ~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el 1714 (1807)
+.+.+....+-+.|+++.+.+..+++.|. ++|+.+..++++..+.....++.+.+++..++.+...++.++..+..|
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q psy2547 1715 RSRYQETDNK 1724 (1807)
Q Consensus 1715 ~~~l~~~~~~ 1724 (1807)
+.++.+++.+
T Consensus 116 e~ki~~ie~~ 125 (126)
T PF07889_consen 116 EGKIDEIEEK 125 (126)
T ss_pred HHHHHHHhcC
No 464
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=94.14 E-value=19 Score=44.29 Aligned_cols=278 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-----HHhhCCCCChHHHH--HHhHHhhhhccCCCHHHHHHH
Q psy2547 1493 SHAANILAKEAYDH-AASVRNKTAAYVASTSNITKQLD-----EFLNAPGATLADIR--NISGLAVNKNIQSNPEQIRER 1564 (1807)
Q Consensus 1493 ~~~a~~~A~~~~~~-a~~~~~~~e~~~~~~~~l~~~lk-----~~l~~~~~~~~~i~--~la~~vl~~~i~~~~~~I~~l 1564 (1807)
+.+|.....+..++ +.....+++.....++..+..++ +.+..+...|..+. .-+..|.. ..-+..+
T Consensus 4 v~~a~s~Y~erk~~lv~~e~~~l~~at~~~~~~L~~lnLP~sl~al~~~~~lp~sl~~~~~~~~v~~------~gG~~~l 77 (339)
T cd09238 4 SAKALSKYTEMVDELIRTEADRLAAASDEARVALREMELPETLIALDGGASLPGDLGLDEEVEAVQI------SGGLAAL 77 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhcCCCCCCCccchHHHHHHHHH------cccHHHH
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2547 1565 ANEINNVIKSLTDIDTILTETAGDLAK------------------------ANDLKRKANLTKAGADSTKNTVQKIVDVL 1620 (1807)
Q Consensus 1565 ~~~i~~~~~~L~~~~~~l~~~~~~l~~------------------------a~~L~~~a~~a~~ea~~l~~~l~~l~~~L 1620 (1807)
...+.++.........++.+....++. ...|..++.+.+.-+++..+.=..|.+.+
T Consensus 78 ~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD~~v~~k~ 157 (339)
T cd09238 78 EGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSDESLRRRI 157 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy2547 1621 TEARTAQDMAEVA-------------------IQTAKDDISAARKDLSQITNDLDDAQQKSNETN---VKVKLLQERLKS 1678 (1807)
Q Consensus 1621 ~~a~~~~~~a~~~-------------------l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e---~~l~~l~~~le~ 1678 (1807)
.+.+..++.+... ...+-..|+.+-++++.++.+...++..|.... .-...+-.....
T Consensus 158 ~~~~~~l~~L~~~~~~~~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll~~~~~ 237 (339)
T cd09238 158 EDAMDGMLILDDEPAAAAAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGS 237 (339)
T ss_pred HHHHHHHHhcCcHhhHhhCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1679 IQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLK 1758 (1807)
Q Consensus 1679 lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~ 1758 (1807)
++..+.+--++++.....++....+-+.+-+++....+++.. .........+-+....+++.....-..+...+++-.+
T Consensus 238 ~e~lF~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~-~~~~~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~k 316 (339)
T cd09238 238 YDALFKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKFSQ-IFDVEGWRAATESHATQIRAAVAKYRELREGMEEGLR 316 (339)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccchhHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2547 1759 QLNETEAMFNSQESELTEL 1777 (1807)
Q Consensus 1759 ~l~~Le~~i~~~e~~le~l 1777 (1807)
=-.+|...+....+..++.
T Consensus 317 FY~dL~~~~~~l~~~~~~f 335 (339)
T cd09238 317 FYSGFQEAVRRLKQECEDF 335 (339)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 465
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=94.12 E-value=0.019 Score=34.52 Aligned_cols=13 Identities=38% Similarity=1.331 Sum_probs=0.0
Q ss_pred eeecCCCCcCCCC
Q psy2547 943 ICECKEGYRGTRC 955 (1807)
Q Consensus 943 ~C~C~~g~~G~~C 955 (1807)
+|.|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
No 466
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.12 E-value=3.3 Score=52.71 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1642 SAARKDLSQITNDLDDAQQKSNETNVKVK-LLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQE 1720 (1807)
Q Consensus 1642 ~~~~~~l~~ie~~l~~~e~~l~~~e~~l~-~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~ 1720 (1807)
..+..++..++..+..++.+++.+...+. .+..+...+......++..+..++.++..++.+++..+..++.....+++
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 171 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKR 171 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q ss_pred HHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1721 TDNKLLSKAESS---GLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQ-ESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1721 ~~~~l~~~~~~l---~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~-e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
......+..... .+.......+..+++.-...+.....++.++..++... ..++.+++.++.+++.++......|.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 172 DRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhhhcC
Q psy2547 1797 DKSNNYK 1803 (1807)
Q Consensus 1797 ~~~~~Y~ 1803 (1807)
.+...++
T Consensus 252 ~~~~i~A 258 (421)
T TIGR03794 252 LNTRIVS 258 (421)
T ss_pred cCCeEEc
No 467
>KOG0811|consensus
Probab=94.10 E-value=16 Score=43.04 Aligned_cols=205 Identities=10% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1594 DLKRKANLTKAGADSTKNTVQKIVDVLT------EARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNV 1667 (1807)
Q Consensus 1594 ~L~~~a~~a~~ea~~l~~~l~~l~~~L~------~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~ 1667 (1807)
.+...+..+...+..+......+++.+. +.....+.+.+....+..-++++...|.++..... ...+.....
T Consensus 18 ~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~--~~~~~~~k~ 95 (269)
T KOG0811|consen 18 DFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL--ESDLRQLKI 95 (269)
T ss_pred cHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy2547 1668 KVKLLQERLKSIQAGFLQNGRSAMDVE---------NEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRAR 1738 (1807)
Q Consensus 1668 ~l~~l~~~le~lk~~l~~~~~~~~~a~---------~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r 1738 (1807)
.++.|...+...-+.+..+..+..+.. .....+..........-.........++....... .++.....
T Consensus 96 ~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e-~~~~~~~~ 174 (269)
T KOG0811|consen 96 QLDKLVDEFSAALKEFQKVQRKSAEREKIPMVARGSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNE-ILEYQLDL 174 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhh-hhhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2547 1739 GQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDKSNN 1801 (1807)
Q Consensus 1739 ~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~~~~ 1801 (1807)
+++-...++.+..++.+...-.++|...+.+.-..++..++.++.+...++.-...|+..+.+
T Consensus 175 ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~y 237 (269)
T KOG0811|consen 175 IEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKY 237 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>KOG1655|consensus
Probab=94.07 E-value=4.7 Score=43.73 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1555 QSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAK------ANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQD 1628 (1807)
Q Consensus 1555 ~~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~------a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~ 1628 (1807)
|.+.+-|..+...-.++..+|..++..|.+.+..+.+ -..++++|-+..++-...+.+.+.+.++-=..+.+.=
T Consensus 15 psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~ 94 (218)
T KOG1655|consen 15 PSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANF 94 (218)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy2547 1629 MAEVAIQTAKDDISAARKDLSQITNDLDDAQ-QKSNETNVKVKLLQERLKSIQAGFLQN----GRSAMDVENEEKNLEKE 1703 (1807)
Q Consensus 1629 ~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e-~~l~~~e~~l~~l~~~le~lk~~l~~~----~~~~~~a~~~ae~a~~~ 1703 (1807)
.++ -|+.....+..++...++++.++..+. .+|+++..++.++-..-.++++-+... .-.-+++..+++.+..+
T Consensus 95 t~e-~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E 173 (218)
T KOG1655|consen 95 TAE-SLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQE 173 (218)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhH
Q ss_pred HH
Q psy2547 1704 VA 1705 (1807)
Q Consensus 1704 a~ 1705 (1807)
..
T Consensus 174 ~d 175 (218)
T KOG1655|consen 174 LD 175 (218)
T ss_pred hh
No 469
>KOG1854|consensus
Probab=94.06 E-value=25 Score=45.26 Aligned_cols=288 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHH
Q psy2547 1501 KEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDT 1580 (1807)
Q Consensus 1501 ~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~ 1580 (1807)
..+......+..............+..++++. ++....++......-+.+................++.
T Consensus 150 ~sl~~~l~~te~~T~~A~sa~n~~I~alndh~-----------~~~kes~d~s~~~~w~sv~~aL~~~~~~ad~da~AEk 218 (657)
T KOG1854|consen 150 ESLKKLLQSTENITKLATSAKNVAIGALNDHV-----------NILKESLDDSKEAGWNSVTTALKLPESAADKDATAEK 218 (657)
T ss_pred hhHHHHHHHHhHHHHHhhhhhhHHHHHHHHHH-----------HHHHHHHHHhhhccchhHHHHHHhHHHHhhhhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1581 ILTETAGDLAKANDLKR---------KANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQI 1651 (1807)
Q Consensus 1581 ~l~~~~~~l~~a~~L~~---------~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~i 1651 (1807)
...++.+.+.....+.. .+..++..|.++..+++++...+...+..-.-..+--+-+++.-..-..+|+++
T Consensus 219 ~aRn~~e~L~~i~n~g~~~eTaq~nPlI~~t~~ta~kLs~qldnv~~ev~~~~se~~vv~ky~~~ve~ar~~F~~EL~si 298 (657)
T KOG1854|consen 219 SARNAQEKLVTIANLGETGETAQANPLITATKDTAHKLSNQLDNVKREVSSSNSEAEVVGKYSELVEKARHQFEQELESI 298 (657)
T ss_pred HHHHHHHHHHHHHHhcccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1652 TN-----------DLDDAQQKSNETNVKVKLLQERLKSIQAGFLQN-GRSAMDVENEEKNLEKEVALAQKQASGLRSRYQ 1719 (1807)
Q Consensus 1652 e~-----------~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~-~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~ 1719 (1807)
-. ..+++..-+.-+..++++++.+|.+.+...... ...+++.+-+-..+.....+.+......+-+.+
T Consensus 299 ~p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k~~~~~~~~~aiEk~Rl~~~~a~~~~~~~~~~~h~~~~~~E 378 (657)
T KOG1854|consen 299 LPGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQKADEELHIKRAIEKQRLQDSRALRAQLEYELEAHRRELQQE 378 (657)
T ss_pred cCCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy2547 1720 ETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTE---LSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1720 ~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~---le~el~~L~~el~~l~~~I~ 1796 (1807)
.......-..+.-..++.++..+.....+-.++.-...+++-..+-..+--++.+++ ...++...-.+++-+.+.|+
T Consensus 379 ~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl~~~qvg~aL~rLrgie~aL~ 458 (657)
T KOG1854|consen 379 LFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNLHSSQVGKALSRLRGIEQALQ 458 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHhHHHHHHHHHHhHHHHHH
Q ss_pred hhh
Q psy2547 1797 DKS 1799 (1807)
Q Consensus 1797 ~~~ 1799 (1807)
+.+
T Consensus 459 ~~~ 461 (657)
T KOG1854|consen 459 ERV 461 (657)
T ss_pred HHH
No 470
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.06 E-value=16 Score=43.16 Aligned_cols=230 Identities=7% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1561 IRERANEINNVIKSLTDIDTILTETAGDLAK-ANDLKRKANLTKA--GADSTKNTVQKIVDVLTEARTAQDMAEVAIQTA 1637 (1807)
Q Consensus 1561 I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~-a~~L~~~a~~a~~--ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a 1637 (1807)
+.-|...+.+-....+++..-+.+....-+. ++.|.+-+..+.. ++..+......+....+..-.....+...|.+.
T Consensus 7 ~~~l~~r~k~g~~~~kel~~flkeRa~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H~~l~~~L~~~ 86 (261)
T cd07674 7 FDVLYHNMKHGQISTKELADFVRERAAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCHLELMRKLNDL 86 (261)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1638 KDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSR 1717 (1807)
Q Consensus 1638 ~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~ 1717 (1807)
.+++....++.........+.....-.....+......++..+..+...-..++.+.. .....++++.+..+
T Consensus 87 ~~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~~q~~~~~l~kaK~~Y~~~cke~e~a~~--------~~~s~k~leK~~~K 158 (261)
T cd07674 87 IKDINRYGDEQVKIHKKTKEEAIGTLEAVQSLQVQSQHLQKSRENYHSKCVEQERLRR--------EGVPQKELEKAELK 158 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1718 YQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKL-KQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1718 l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~-~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
+....+.+....+.++..+.. ...++....+..++.. ++|.-+...|......+......+.+.-.++......+.
T Consensus 159 ~~ka~~~y~~~~~ky~~~~~~---~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~id 235 (261)
T cd07674 159 TKKAAESLRGSVEKYNRARGD---FEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTHVQIGQVHEEFKQNVENVG 235 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhCC
Q ss_pred hhhhh
Q psy2547 1797 DKSNN 1801 (1807)
Q Consensus 1797 ~~~~~ 1801 (1807)
...+.
T Consensus 236 ~~~Di 240 (261)
T cd07674 236 VENLI 240 (261)
T ss_pred HHHHH
No 471
>PHA03332 membrane glycoprotein; Provisional
Probab=94.03 E-value=7.2 Score=52.06 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1580 TILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQ 1659 (1807)
Q Consensus 1580 ~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e 1659 (1807)
..+--+......|...+.+++++..-+....+++-+..+++.+++++++...+++.++++.+.++-+.|..+...+++-.
T Consensus 853 ~AIGvATAAqiTA~vAL~~A~QAL~va~~~~~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI 932 (1328)
T PHA03332 853 DAIGLSAAAFTMASAALNAATQALAVATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNI 932 (1328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy2547 1660 QKSNETNVKVKL-LQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRAR 1738 (1807)
Q Consensus 1660 ~~l~~~e~~l~~-l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r 1738 (1807)
+..+.--..|++ +..++......+..+.+++++.-.++++..++...+..=+.++..--.++.+-..++..+++.-+.=
T Consensus 933 ~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~~~~~~N~~ie~~~aaalyYQQlnsltnqv~~saskL~~qv~myrTC 1012 (1328)
T PHA03332 933 RAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELGTTTNERIEEVMAAALYYQQLNSLTNQVTQSASKLGYQVGMYRTC 1012 (1328)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHH
Q psy2547 1739 GQMLLN 1744 (1807)
Q Consensus 1739 ~~~l~~ 1744 (1807)
++.|..
T Consensus 1013 l~Sl~a 1018 (1328)
T PHA03332 1013 LKSLLA 1018 (1328)
T ss_pred HHHhhc
No 472
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=94.00 E-value=19 Score=43.60 Aligned_cols=239 Identities=12% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhh-------
Q psy2547 1542 IRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKA--------NDLKRKANLTKAGA------- 1606 (1807)
Q Consensus 1542 i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a--------~~L~~~a~~a~~ea------- 1606 (1807)
++.+.+.+..-.+|....-+..+++ ......++..+.......... +.|...-+.+..+|
T Consensus 14 ~~~Yv~aIn~G~vP~iesa~~~~~e-----~e~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~~~~A~~~F~~~ 88 (297)
T PF02841_consen 14 VKSYVDAINSGSVPCIESAWQAVAE-----AENRAAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQCEKEALEVFMKR 88 (297)
T ss_dssp HHHHHHHHHTTS--BHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Q psy2547 1607 ----------DSTKNTVQKIVDVL--TEARTAQDMAEVAIQTAKDDISA---------------ARKDLSQITNDLDDAQ 1659 (1807)
Q Consensus 1607 ----------~~l~~~l~~l~~~L--~~a~~~~~~a~~~l~~a~~~i~~---------------~~~~l~~ie~~l~~~e 1659 (1807)
..|...+......+ ..-......-+..|..+...|.. ..+.++.+...+...-
T Consensus 89 s~~d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~~Y~~~p 168 (297)
T PF02841_consen 89 SFGDEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEKEYEQEP 168 (297)
T ss_dssp ----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHHHHHHSS
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhcC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Q psy2547 1660 QKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRAR- 1738 (1807)
Q Consensus 1660 ~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r- 1738 (1807)
.+=..+..-+.++-...+.+...+......+...+.++...+.+.+.++.+...+.+..+..+..+++....+++...+
T Consensus 169 ~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L 248 (297)
T PF02841_consen 169 GKGVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQL 248 (297)
T ss_dssp ---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy2547 1739 GQMLLNKASQLSVNTTAKLKQLNETEAMF--NSQESELTELSKNIAELQ 1785 (1807)
Q Consensus 1739 ~~~l~~~a~~l~~~~~~~~~~l~~Le~~i--~~~e~~le~le~el~~L~ 1785 (1807)
.+++..+.+.+..+.+..+........++ +...+++..+..+|..|+
T Consensus 249 ~ekme~e~~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 249 KEKMEEEREQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 473
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=93.97 E-value=4.2 Score=43.45 Aligned_cols=110 Identities=6% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1675 RLKSIQAGFLQN-GRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNT 1753 (1807)
Q Consensus 1675 ~le~lk~~l~~~-~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~ 1753 (1807)
+|..+-.+++.. ...+.+++..+.++...-.++..-+..+.+.++..............+....+++.. +..++...
T Consensus 22 ~i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~~e~~i 99 (146)
T PF08702_consen 22 GIQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYILETKI 99 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHH
T ss_pred hHHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH--HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1754 TAKLKQLNETEAMFNSQESELTELSKNIAELQK 1786 (1807)
Q Consensus 1754 ~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~ 1786 (1807)
......|+.|...++.+..+|..|+.+|..+..
T Consensus 100 ~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 100 INQPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PTZ00332 paraflagellar rod protein; Provisional
Probab=93.97 E-value=21 Score=44.16 Aligned_cols=452 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred hHHHHHhhhhcccccCCCcchhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhh-hccCCchhhhhhhhhh
Q psy2547 1192 QTTKVITDASNIKQTGASGAYTKEFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQI-MNNEDPNGVGKTLGNT 1270 (1807)
Q Consensus 1192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~le~~l~~lq~lL~~~~~~~~~~~~l~~~l~~l~~~l-~~~~~l~~~e~~l~~~ 1270 (1807)
.+....+.++.-........+...++.-..+|...+..|.+......++..+-..+....... ....--+.++..-..+
T Consensus 108 ~l~~~Lq~lk~~~~~t~~~~~~~~~~~~~~~~E~~E~elr~~~~d~~~l~~v~~~~~~~l~d~~~~t~~Qnal~~~~~~i 187 (589)
T PTZ00332 108 ALKKVLQDLKQNRNKTRVVSFTQMIDNAIAKMEKVEEELRRSQLDATQLAQVPTATLKNIEDIMNVTQIQNALASTDDQI 187 (589)
T ss_pred HHHHHHHHHHhCCCcCcccccccchHHHHHHHHHHHHHHHHhhcCHHHHhhccHHHHHHHHhhccHHHHHHHHHhcCHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1271 TQRINLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTEN 1350 (1807)
Q Consensus 1271 ~~~~~~~~~~le~L~~el~~l~~~~~~l~~~~~~l~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~~i~~a~~~~~~a~~ 1350 (1807)
..++..+++.-+-+...|.+-+.. +-++....+-...+.++..+.+.+..+.+.......... .-...+.+.+
T Consensus 188 ~~~~~~~~k~~ei~~~ai~~GEM~---~AEe~~~~k~ql~Erl~~Li~Dk~~iI~~~~~e~~~~~~----~~~v~k~a~~ 260 (589)
T PTZ00332 188 KTQLAQLEKTNEIQNVAMHDGEMQ---VAEEQMWTKVQLQERLIELVADKFRLIGKCEEENKSFSK----IHEVQKQANQ 260 (589)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhH---HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhcccHHH----HHHHHHHhhh
Q ss_pred HHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhcccchhHHHhhccCCCCCCCCCCCCCCCCCCCcccCCchhHHHHHHHHH
Q psy2547 1351 LVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLCGGAGCGKCGGMWCSNGTLSESNSAKDY 1430 (1807)
Q Consensus 1351 ll~~~~~~~~~~~~e~~~~L~~L~~kL~~l~~~L~~l~~~icg~~~~~C~~~Cgg~~C~~Cgg~~C~~~a~~~a~~A~~~ 1430 (1807)
....+.+.-.+..+.-+..|..+.+.++.+...-....+.. ..-..+++..++.
T Consensus 261 e~sa~~daK~R~~~~CE~Dl~~i~d~iq~~~~eDa~~~KRy--------------------------~a~k~~Se~f~~~ 314 (589)
T PTZ00332 261 ETSQMKDAKRRLKQRCETDLKHIHDAIQKADLEDAEAMKRY--------------------------ATNKEKSERFIRE 314 (589)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH--------------------------HhhhhhHHHHHHH
Q ss_pred HHHhhHh----hhhhHHHHHHHHHHHH-HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1431 AETSKKL----INEKESKAEELRKHMI-ILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYD 1505 (1807)
Q Consensus 1431 a~~l~~~----i~e~~~~~eeL~~~~~-~~~~~~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~~ 1505 (1807)
.++-++. |.+++..+..+.++-. .+...+.+.+..++-...-...-.-+.+-...++..-...+.|+.-+..+.+
T Consensus 315 N~e~Qe~~wnrI~eLer~Lq~l~~eR~~eV~rRIe~~~rEekRr~~yeqFl~~asQHkqrL~~tv~Ncd~a~~~~~~lee 394 (589)
T PTZ00332 315 NEDRQEEAWNKIQDLERQLQRLGTERFEEVKRRIEENDREEKRRVEYQQFLEVAGQHKKLLELTVYNCDLALRCTGLVEE 394 (589)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy2547 1506 HAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTET 1585 (1807)
Q Consensus 1506 ~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~ 1585 (1807)
-+.+-=+.+.....++.+.+..+...+.. ..++.+..+++. +-+-+-.....|++++..+...
T Consensus 395 ~V~egc~~i~~r~DK~~q~L~elll~V~k-----e~Le~FR~lYlt------------lGeL~yKKErRLEeLDRqIR~~ 457 (589)
T PTZ00332 395 LVSEGCAAVKARHDKTNQDLAALRLQVHK-----EHLEYFRMLYLT------------LGSLIYKKEKRLEEIDRNIRTT 457 (589)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHH------------HHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1586 AGDLAKANDLKR-KANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNE 1664 (1807)
Q Consensus 1586 ~~~l~~a~~L~~-~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~ 1664 (1807)
.-.++-+-+-.. .|+...+...++......+...|..+...+..+.+.++..++.+ ...-+.=+--.-+.-+..++.
T Consensus 458 hiqrE~amETlDPNAKkyseakkeLl~~r~~Ve~eI~~L~~Kq~~alE~F~pTE~aL--~~AGveFVHP~eE~~e~nl~R 535 (589)
T PTZ00332 458 HIQLEFCVETFDPNAKKHADMKKELYKLRQGVEEELAMLKEKQAQALEMFKESEEAL--DAAGIEFVHPVDENNEEVLTR 535 (589)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH--HHhCCCccCHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1665 TNVKVKLLQERLKSIQAGFLQNGRSAMDVEN 1695 (1807)
Q Consensus 1665 ~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~ 1695 (1807)
...-++--..-.+.-+.++..-++.+..++.
T Consensus 536 rSK~veYr~~~~~~EE~ki~~~r~~i~ra~~ 566 (589)
T PTZ00332 536 RSKMVEYRSHLAKQEEVKIAAEREEIKRARL 566 (589)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
No 475
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.96 E-value=21 Score=44.15 Aligned_cols=188 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2547 1616 IVDVLTEARTAQDMAEVAIQTAKDDISAARK-DLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDV- 1693 (1807)
Q Consensus 1616 l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~-~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a- 1693 (1807)
.+.........+...+.....-..+.....+ .+.+.++++.+.+..+..+....-.... ..++.++..+.....-.
T Consensus 33 ~q~~q~~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~--~~~q~e~~~~~~~~~~N~ 110 (438)
T COG4487 33 EQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE--LALQDEIAKLEALELLNL 110 (438)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhH
Q ss_pred --HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1694 --ENEEKNLEKEVALAQKQASG-LRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQ 1770 (1807)
Q Consensus 1694 --~~~ae~a~~~a~~ae~~l~e-l~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~ 1770 (1807)
..+++.+..+++....++.+ +..+++.++.+....+...........+++..++....+...++.+-. +.-+..+.
T Consensus 111 e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~-~~~e~~e~ 189 (438)
T COG4487 111 EKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEAN-LDLEFKEN 189 (438)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q psy2547 1771 ESELTELSKNIAELQKRIQSCINFIVDKSNNYKNCV 1806 (1807)
Q Consensus 1771 e~~le~le~el~~L~~el~~l~~~I~~~~~~Y~tc~ 1806 (1807)
+..++.+.+.+..++...+.-.+.++..+....+|.
T Consensus 190 ~e~~~s~~~~~k~~k~~ae~~~qq~q~~a~~~~n~~ 225 (438)
T COG4487 190 EEQRESKWAILKKLKRRAELGSQQVQGEALELPNES 225 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcchhh
No 476
>KOG2891|consensus
Probab=93.92 E-value=6 Score=44.68 Aligned_cols=157 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1635 QTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQN-GRSAMDVENEEKNLEKEVALAQKQASG 1713 (1807)
Q Consensus 1635 ~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~-~~~~~~a~~~ae~a~~~a~~ae~~l~e 1713 (1807)
+.++...+--..++.+-+.++.-.....-.+...+++-...+++.+.+-.++ ++...+++..+++-+.+.+++++....
T Consensus 277 kraeerrqieterlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeaeerqra 356 (445)
T KOG2891|consen 277 KRAEERRQIETERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRA 356 (445)
T ss_pred HHHHHHhhhhHHHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1714 LRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCI 1792 (1807)
Q Consensus 1714 l~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~ 1792 (1807)
-+.+..++++.-...+..-.-...++..-..+++.+. .-...+.+|++-+.+|++++.++..-++.+....-++++++
T Consensus 357 eekeq~eaee~~ra~kr~egvkllkf~fekieareer-rkqkeeeklk~e~qkikeleek~~eeedal~~all~~qeir 434 (445)
T KOG2891|consen 357 EEKEQKEAEELERARKREEGVKLLKFEFEKIEAREER-RKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLNLQEIR 434 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
No 477
>KOG0288|consensus
Probab=93.89 E-value=2.2 Score=51.25 Aligned_cols=128 Identities=9% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1648 LSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLS 1727 (1807)
Q Consensus 1648 l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~ 1727 (1807)
+..+..+..+.+.++.+++.++.+.+++...+..+...++...+.+...+...+..+..|+++..++.++.-..+...+.
T Consensus 1 m~~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~ 80 (459)
T KOG0288|consen 1 MAPLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKT 80 (459)
T ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1728 KAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELT 1775 (1807)
Q Consensus 1728 ~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le 1775 (1807)
+...........-.++++++.+.++..+.+...-.|+..+.+...+..
T Consensus 81 ~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~ 128 (459)
T KOG0288|consen 81 LTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAER 128 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
No 478
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.88 E-value=14 Score=41.83 Aligned_cols=176 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1626 AQDMAEVAIQTAKDDISAARKDLSQ-ITNDLDDAQQKSNETNVKVKL-LQERLKSIQAGFLQNGRSAMDVENEEKNLEKE 1703 (1807)
Q Consensus 1626 ~~~~a~~~l~~a~~~i~~~~~~l~~-ie~~l~~~e~~l~~~e~~l~~-l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~ 1703 (1807)
........+..+......+-..... ++.....+.....+-..++.. ++.++..-+..+...+..+..-+..++.-...
T Consensus 21 ~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~ 100 (201)
T PF12072_consen 21 RKKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQ 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1704 VALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAE 1783 (1807)
Q Consensus 1704 a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~ 1783 (1807)
++..++.++.....+...+..+......+.....+....+.++..|. .-+.+..-|+.++.++..-...+ +..-..+
T Consensus 101 L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT-~eEAk~~Ll~~le~e~~~e~a~~--ir~~eee 177 (201)
T PF12072_consen 101 LEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLT-AEEAKEILLEKLEEEARREAAAL--IRRIEEE 177 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_pred HHHHHHHHHHHHHhh-hhhcCC
Q psy2547 1784 LQKRIQSCINFIVDK-SNNYKN 1804 (1807)
Q Consensus 1784 L~~el~~l~~~I~~~-~~~Y~t 1804 (1807)
.+.+.+..-..|-.. +++|++
T Consensus 178 ak~~A~~~Ar~Ii~~AiQR~A~ 199 (201)
T PF12072_consen 178 AKEEADKKARRIIATAIQRYAS 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
No 479
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=93.87 E-value=4.2 Score=50.81 Aligned_cols=175 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1577 DIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLD 1656 (1807)
Q Consensus 1577 ~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~ 1656 (1807)
+.-..++++-..-.....|-.-+..++.++..+.+++..+.+....+.. .+...++.++..|.++-.+|.+++...+
T Consensus 5 dpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~---~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 5 DPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQ---DAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cccccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy2547 1657 DAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKR 1736 (1807)
Q Consensus 1657 ~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~ 1736 (1807)
..|..+.++...|+.|..--..|...+..++ ++..+...++.++..+. ++++.++...+..+.+.+ +.-+.. ...
T Consensus 82 ~sE~~V~~it~dIk~LD~AKrNLT~SIT~Lk-rL~MLv~a~~qL~~~~~--~r~Y~e~a~~L~av~~L~-~~F~~y-ksi 156 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQLDNAKRNLTQSITTLK-RLQMLVTAVEQLKELAK--KRQYKEIASLLQAVKELL-EHFKPY-KSI 156 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH-HHHHcc-cCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1737 ARGQMLLNKASQLSVNTTAKLKQ 1759 (1807)
Q Consensus 1737 ~r~~~l~~~a~~l~~~~~~~~~~ 1759 (1807)
.++.+|..++..+..++..++.+
T Consensus 157 ~~I~~L~~~i~~l~~~L~~qI~~ 179 (383)
T PF04100_consen 157 PQIAELSKRIDQLQNELKEQIFE 179 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 480
>PHA02607 wac fibritin; Provisional
Probab=93.84 E-value=1.6 Score=53.80 Aligned_cols=207 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1587 GDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLT-----EARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQK 1661 (1807)
Q Consensus 1587 ~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~-----~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~ 1661 (1807)
...+.+..|-+.....+..++++.+.++.++..|. .+-+++.....++..++..+.+...++..+...+++++..
T Consensus 49 ~VQ~NV~~ld~n~~~~~~kine~vd~vn~I~~~L~~~gD~~~i~qv~~n~~dI~~lk~~~~~~~~~l~~~~~~~~~~~~~ 128 (454)
T PHA02607 49 NVQKNVEQLDENTKKTKDKINEVVDDVNTIQENLDVIGDISVIDQINQNVADIEVLKKDVSDTTDKLAGTTNEVDEIEAD 128 (454)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q ss_pred HHH-----------HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1662 SNE-----------TNVKVKLLQERLKSI------------------QAGFLQNGRSAMDVENEEKNLEKEVALAQKQAS 1712 (1807)
Q Consensus 1662 l~~-----------~e~~l~~l~~~le~l------------------k~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~ 1712 (1807)
+-. +...|-=++++|-.. |-++.++...+.....++.+++....+. .+.
T Consensus 129 iG~~~p~~d~~~rTVr~di~~IK~elG~y~g~diNG~p~p~s~gtGmK~ri~~n~~~~~~~~~Ri~~LE~~~~~s--dVg 206 (454)
T PHA02607 129 IGVFNPEADPVTRTIRNDILWIKTELGAYPGFDINGNPDPGSTGTGMKYRIIDNTTALVDHGQRITELENDWADS--DVG 206 (454)
T ss_pred cCCcCcccCCCccchhhhHHHHHHHhccCCCCCCCCCcCCCCCCCceeeehhhhHHHHHhhhhHHHHHHhhhhhc--Cch
Q ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH---
Q psy2547 1713 GLRSRYQETDNKLLSKAESS-GLKRARGQMLLNKASQLSVNTTAKLKQLN-----ETEAMFNSQESELTELSKNIAE--- 1783 (1807)
Q Consensus 1713 el~~~l~~~~~~l~~~~~~l-~~~~~r~~~l~~~a~~l~~~~~~~~~~l~-----~Le~~i~~~e~~le~le~el~~--- 1783 (1807)
.|..++.+++.++....... .-.-.|+..++..+..+..++.+...+|- .+..++..++..+..+..+|..
T Consensus 207 ~Lt~~v~~lR~ElG~~~~at~~~iY~RL~~lE~~~~~~~~eI~~Ik~~Igf~~~~~I~tRV~~les~is~l~~~IN~~~~ 286 (454)
T PHA02607 207 QLTREVNDLRAELGPSSLATGEPIYTRLNTLEDAITGINSDIDEIKTAIGFPGTTSIITRVTTLESNISSLNNQVNGPVT 286 (454)
T ss_pred HHHHHHHHHHHHhCCCCcccCccHHHHHHHHhhhhhhhhhHHHHHHHHhCCCCCCccchhhhhhhhhHHHHHHHhccccc
Q ss_pred -HHHHHHHHHHHH
Q psy2547 1784 -LQKRIQSCINFI 1795 (1807)
Q Consensus 1784 -L~~el~~l~~~I 1795 (1807)
+..++..++..|
T Consensus 287 gi~~rltaIet~I 299 (454)
T PHA02607 287 GIKPRLTAIETQI 299 (454)
T ss_pred cchhhHHHHhhhc
No 481
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.81 E-value=1.2 Score=48.80 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1612 TVQKIVDVLTEARTAQDMAEVAIQ------TAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQ 1685 (1807)
Q Consensus 1612 ~l~~l~~~L~~a~~~~~~a~~~l~------~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~ 1685 (1807)
+++-+++.|.+|--...... ++ +++....+++.++++.+.+.+.+.+++..++..+++.+.+|+.++.....
T Consensus 104 D~elvrkEl~nAlvRAGLkt--L~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~ 181 (290)
T COG4026 104 DVELVRKELKNALVRAGLKT--LQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR 181 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1686 NGRSAMDVENEEKNLEKEVALAQKQASGLRSRY 1718 (1807)
Q Consensus 1686 ~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l 1718 (1807)
+.+.++.+..+...++++.++++..++-....+
T Consensus 182 LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 182 LEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHhchhHHHHHHHHHHHhcccccchHHHH
No 482
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=93.75 E-value=4.5 Score=43.19 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1688 RSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMF 1767 (1807)
Q Consensus 1688 ~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i 1767 (1807)
....-+.+.-..+...++.++..+.++..........+......+.......+.-......+.+++++++ +..++..+
T Consensus 22 ~i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~~e~~i 99 (146)
T PF08702_consen 22 GIQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYILETKI 99 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHH
T ss_pred hHHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH--HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2547 1768 NSQESELTELSKNIAELQKRIQSCINFIVDKSNN 1801 (1807)
Q Consensus 1768 ~~~e~~le~le~el~~L~~el~~l~~~I~~~~~~ 1801 (1807)
......|..|..-+..+..+|.+|+..|..+...
T Consensus 100 ~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~ 133 (146)
T PF08702_consen 100 INQPSNIRVLQNILRSNRQKIQRLEQDIDQQERY 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>KOG0972|consensus
Probab=93.73 E-value=7.9 Score=44.42 Aligned_cols=216 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHhHHhhhhccCCCHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2547 1540 ADIRNISGLAVNKNIQSNPEQIRERANEINNV-IKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVD 1618 (1807)
Q Consensus 1540 ~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~-~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~ 1618 (1807)
....++.++-.......+.+.+.++.-..+.. .......+.+++...+.++=.-++.+-+=.++.. ++..+.+.+-
T Consensus 151 ~~l~ki~eE~~~~~dd~D~eNfi~ln~laQ~~a~~d~N~~~~vl~s~tDa~eW~lEvERVlPQLKVt---~k~DakDWR~ 227 (384)
T KOG0972|consen 151 DDLDKIVEEPMNFLDDDDDENFIELNLLAQGLATEDKNPLQSVLQSNTDAIEWKLEVERVLPQLKVT---LKQDAKDWRL 227 (384)
T ss_pred hhHHHHhhhhhhcccCCcchhhHHhhhhhhcccccccChHHHHHhhcchHHHHHHHHHHhhhhheeh---hccccHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1619 VLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEK 1698 (1807)
Q Consensus 1619 ~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae 1698 (1807)
-+++..+....+++++..+...++.+.+++ ...|+.+..+-+.+.++|+.+-.++..+...+.+++..-+
T Consensus 228 H~~QM~s~~~nIe~~~~~~~~~Ldklh~ei----------t~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~ 297 (384)
T KOG0972|consen 228 HLEQMNSMHKNIEQKVGNVGPYLDKLHKEI----------TKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYK 297 (384)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1699 NLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNS 1769 (1807)
Q Consensus 1699 ~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~ 1769 (1807)
.+..-..+-.+.+.++.++++.++++.++ .........-+.+++..+.+|++++..+.-+|--++..+..
T Consensus 298 q~~~gv~~rT~~L~eVm~e~E~~KqemEe-~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ehs~lq 367 (384)
T KOG0972|consen 298 QASVGVSSRTETLDEVMDEIEQLKQEMEE-QGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFEHSILQ 367 (384)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHH-hcccccCCchHHHHHHHHHHHHHHHHhhhhheehhhHHHHH
No 484
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=93.70 E-value=3.1 Score=47.98 Aligned_cols=170 Identities=18% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1623 ARTAQDMAEVAIQTAKDDISAARKDLSQI-TNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLE 1701 (1807)
Q Consensus 1623 a~~~~~~a~~~l~~a~~~i~~~~~~l~~i-e~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~ 1701 (1807)
..++.+.+.++-.++=+++.+.+++|..+ ...+.....++.-+..++..+..+++.++++.-++-..-..+...+
T Consensus 14 ~~~~~~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l---- 89 (268)
T PF11802_consen 14 VTDAKEELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL---- 89 (268)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1702 KEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNI 1781 (1807)
Q Consensus 1702 ~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el 1781 (1807)
.++++..+..+++.+-.-++.+.+.+.....|.++..++.+.+...+..+.++++.......+ .+...++..++
T Consensus 90 -----gkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-~rv~~el~~K~ 163 (268)
T PF11802_consen 90 -----GKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-SRVFQELKTKI 163 (268)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q psy2547 1782 AELQKRIQSCINFIVDKSNNY 1802 (1807)
Q Consensus 1782 ~~L~~el~~l~~~I~~~~~~Y 1802 (1807)
.++++..+.+...|-+-.+.|
T Consensus 164 ~~~k~~~e~Ll~~LgeFLeeH 184 (268)
T PF11802_consen 164 EKIKEYKEKLLSFLGEFLEEH 184 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
No 485
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=93.70 E-value=4.6 Score=51.47 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1621 TEARTAQDMAEVAIQTAKDDISAARKDLS-QITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKN 1699 (1807)
Q Consensus 1621 ~~a~~~~~~a~~~l~~a~~~i~~~~~~l~-~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~ 1699 (1807)
......+..++..+..++.++..++..+. ....+......+...+..++..++.++..++.+++..+..++.....++
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~- 170 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFK- 170 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1700 LEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAK-LKQLNETEAMFNSQESELTELS 1778 (1807)
Q Consensus 1700 a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~-~~~l~~Le~~i~~~e~~le~le 1778 (1807)
+...+.++.........+.+........+......++...+.++..+..++... ..++.+++.++...+.++..++
T Consensus 171 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~ 247 (421)
T TIGR03794 171 ---RDRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELE 247 (421)
T ss_pred ---HHHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q psy2547 1779 KNIA 1782 (1807)
Q Consensus 1779 ~el~ 1782 (1807)
.++.
T Consensus 248 ~~l~ 251 (421)
T TIGR03794 248 NKLN 251 (421)
T ss_pred HHHh
No 486
>KOG2180|consensus
Probab=93.68 E-value=29 Score=45.13 Aligned_cols=231 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1563 ERANEINNVIKSLTDIDTILTETAGDLAKAND-LKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDI 1641 (1807)
Q Consensus 1563 ~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~-L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i 1641 (1807)
+...+|.=....|.+++..+.++.+++.+.++ |....+.-...-.+.++.+.+++..+.++...++.++..-+..+..+
T Consensus 23 ~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V 102 (793)
T KOG2180|consen 23 EYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMV 102 (793)
T ss_pred HHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q psy2547 1642 SAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSI-----QAGFLQNGRSAMDVENEEKNL-----EKEVALAQKQA 1711 (1807)
Q Consensus 1642 ~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~l-----k~~l~~~~~~~~~a~~~ae~a-----~~~a~~ae~~l 1711 (1807)
+++-++|+++.-..+++...+ .+..+|.-|-.-++.+ ++++.+.-..+..+.+-++-+ ..++..+.+.+
T Consensus 103 ~eiTrdIKqLD~AKkNLTtSi-T~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si 181 (793)
T KOG2180|consen 103 QEITRDIKQLDFAKKNLTTSI-TTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESI 181 (793)
T ss_pred HHHHHHHHhhhHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH--HHHHH
Q psy2547 1712 SGLRSRYQETDNKLLSKAESSGLK------RARGQMLLNKASQLSVNTTAKL------KQLNETEAMFNSQES--ELTEL 1777 (1807)
Q Consensus 1712 ~el~~~l~~~~~~l~~~~~~l~~~------~~r~~~l~~~a~~l~~~~~~~~------~~l~~Le~~i~~~e~--~le~l 1777 (1807)
++++..+.....+--+..=.-... ..++..+=.-+..+.-...+.+ ++|.+.+.-+..+++ .|+.+
T Consensus 182 ~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL~ey~~IF~en~E~a~LDki 261 (793)
T KOG2180|consen 182 DKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQLEEYEQIFRENEEAASLDKL 261 (793)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHhccHhhhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2547 1778 SKNIAELQKRIQSCINF 1794 (1807)
Q Consensus 1778 e~el~~L~~el~~l~~~ 1794 (1807)
.++..-+++.+.+.++.
T Consensus 262 drRY~wfKr~L~~fe~k 278 (793)
T KOG2180|consen 262 DRRYAWFKRLLRDFEEK 278 (793)
T ss_pred HHHHHHHHHHHHHHHHh
No 487
>KOG3771|consensus
Probab=93.68 E-value=8 Score=47.91 Aligned_cols=192 Identities=9% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy2547 1600 NLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLK-S 1678 (1807)
Q Consensus 1600 ~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le-~ 1678 (1807)
++.......++.+..+|++.+..-..++..+......+.+.|.++-.- ....+..+..+....+.+..++. .
T Consensus 33 E~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p-------~~~g~~~l~~v~~~~d~l~~d~~~~ 105 (460)
T KOG3771|consen 33 EQEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEP-------DWPGRDYLQAVADNDDLLWKDLDQK 105 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------ccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2547 1679 IQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKL- 1757 (1807)
Q Consensus 1679 lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~- 1757 (1807)
+.+.+..--..+-..-..++....+.......++..+..++.++.....-...+.+++.+++..+..-+.+..++.+.+
T Consensus 106 l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP 185 (460)
T KOG3771|consen 106 LVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELP 185 (460)
T ss_pred HHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1758 ----KQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1758 ----~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
.++.-+...++.+..--...-.++.+|-.+|..+...|.++
T Consensus 186 ~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 186 ALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 488
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=93.65 E-value=5.1 Score=44.73 Aligned_cols=132 Identities=7% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHhHHhhhhccCCCHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2547 1541 DIRNISGLAVNKNIQSNPEQIRERANEINNVI---KSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIV 1617 (1807)
Q Consensus 1541 ~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~~---~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~ 1617 (1807)
....+++.|..+.+......+..+.+.+..+. -++..+...|.++-.....-..++.+.+.++.++.+......+++
T Consensus 51 ~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e 130 (190)
T PF05266_consen 51 TFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELE 130 (190)
T ss_pred HHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1618 DVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLL 1672 (1807)
Q Consensus 1618 ~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l 1672 (1807)
..+.+++..+..++.+...+........++|..++.....++..+.+++.+...+
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.65 E-value=0.9 Score=51.25 Aligned_cols=80 Identities=15% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1644 ARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDN 1723 (1807)
Q Consensus 1644 ~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~ 1723 (1807)
++.++.++++++++++.+++++..+.+ ++..+++.++.+..+.+.+++++..++++++..++.+++.++.+++.+++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q psy2547 1724 KLL 1726 (1807)
Q Consensus 1724 ~l~ 1726 (1807)
.+.
T Consensus 168 ~~~ 170 (206)
T PRK10884 168 TII 170 (206)
T ss_pred HHH
No 490
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=93.65 E-value=0.79 Score=47.60 Aligned_cols=138 Identities=6% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1619 VLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEK 1698 (1807)
Q Consensus 1619 ~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae 1698 (1807)
.+..+....+....+...++....+.+.+--...-......+.|..+..++.++++.+-.++..+...++.+..++++++
T Consensus 3 ll~~l~~~vkk~a~~~p~~ess~ee~~ve~~~~rve~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eele 82 (157)
T COG3352 3 LLDNLKKLVKKEATEEPQQESSDEEKQVEAIHSRVENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELE 82 (157)
T ss_pred chHHHHHHHHHHHHhcchhhhhhhhHhHHHhhcccccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1699 NLEKEVALAQKQASGLRSRYQETDNKLLSKAES-SGLKRARGQMLLNKASQLSVNTTAK 1756 (1807)
Q Consensus 1699 ~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~-l~~~~~r~~~l~~~a~~l~~~~~~~ 1756 (1807)
.++..++.+...++.+.+++.-...+..+..+. +++...++.+++...+...+.+...
T Consensus 83 rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 83 RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
No 491
>KOG1854|consensus
Probab=93.64 E-value=29 Score=44.66 Aligned_cols=313 Identities=9% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhCCCCChHHHHH
Q psy2547 1473 NEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKT--------AAYVASTSNITKQLDEFLNAPGATLADIRN 1544 (1807)
Q Consensus 1473 ~~~~~~~~~l~~~~~~~~~~~~~a~~~A~~~~~~a~~~~~~~--------e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~ 1544 (1807)
+.+..-++.+......+-....++...++.......++.+.. ...++..+...+.............+++..
T Consensus 150 ~sl~~~l~~te~~T~~A~sa~n~~I~alndh~~~~kes~d~s~~~~w~sv~~aL~~~~~~ad~da~AEk~aRn~~e~L~~ 229 (657)
T KOG1854|consen 150 ESLKKLLQSTENITKLATSAKNVAIGALNDHVNILKESLDDSKEAGWNSVTTALKLPESAADKDATAEKSARNAQEKLVT 229 (657)
T ss_pred hhHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHH
Q ss_pred HhHHhhhhccCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2547 1545 ISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEAR 1624 (1807)
Q Consensus 1545 la~~vl~~~i~~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~ 1624 (1807)
+++.--..+......-|....+.+.++...|+++...+...+....-..++.+..++++.+ ...+++.+.-.++-+.
T Consensus 230 i~n~g~~~eTaq~nPlI~~t~~ta~kLs~qldnv~~ev~~~~se~~vv~ky~~~ve~ar~~---F~~EL~si~p~l~~~d 306 (657)
T KOG1854|consen 230 IANLGETGETAQANPLITATKDTAHKLSNQLDNVKREVSSSNSEAEVVGKYSELVEKARHQ---FEQELESILPGLSLAD 306 (657)
T ss_pred HHHhcccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCchhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy2547 1625 TAQDMAEVAIQTAKDDISAARKDLSQITNDLDD-------------AQQKSNETNVKVKLLQERLKSIQAGF-LQNGRSA 1690 (1807)
Q Consensus 1625 ~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~-------------~e~~l~~~e~~l~~l~~~le~lk~~l-~~~~~~~ 1690 (1807)
......+.++..+ |.-+-.++++++.++.+ =+.++.+....-.++.-.++..+.++ .++...+
T Consensus 307 ~~~~L~~~dln~l---iahah~rvdql~~~l~d~k~~~~~~~~~aiEk~Rl~~~~a~~~~~~~~~~~h~~~~~~E~~~~~ 383 (657)
T KOG1854|consen 307 KEENLSEDDLNKL---IAHAHTRVDQLQKELEDQKADEELHIKRAIEKQRLQDSRALRAQLEYELEAHRRELQQELFKLI 383 (657)
T ss_pred hhhhccHhHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1691 MDVEN--EEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFN 1768 (1807)
Q Consensus 1691 ~~a~~--~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~ 1768 (1807)
..++. +.+...+-+..++.-.+.+++.++..++.+. .+-.+.--+++..+.+-...++...+.+|+.+++.+.
T Consensus 384 ~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~~-----~e~~~~~~e~~l~ernl~~~qvg~aL~rLrgie~aL~ 458 (657)
T KOG1854|consen 384 EEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLLT-----IEFKQKLEEAVLQERNLHSSQVGKALSRLRGIEQALQ 458 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHhcchHhHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2547 1769 SQESELTELSKNIAELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1769 ~~e~~le~le~el~~L~~el~~l~~~I~~ 1797 (1807)
... +++.-.++-.++=.-...+...+..
T Consensus 459 ~~~-~~~~e~r~a~q~w~ac~nlk~s~~~ 486 (657)
T KOG1854|consen 459 ERV-RAELEARKAKQLWLACSNLKDSLNK 486 (657)
T ss_pred HHH-HHHHHhhhHHHHHHHHHHHHHhhhc
No 492
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=93.59 E-value=0.2 Score=66.62 Aligned_cols=368 Identities=8% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHH----HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1423 ESNSAKDYAETSKKLINEKESKAEEL----RKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANI 1498 (1807)
Q Consensus 1423 ~a~~A~~~a~~l~~~i~e~~~~~eeL----~~~~~~~~~~~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~~~~~a~~ 1498 (1807)
..+++...-..|.+.++..+.++..| ......+...+....+...-...+....... .|...+..+...++....
T Consensus 20 ~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-~L~~~~~~L~~~le~l~~ 98 (619)
T PF03999_consen 20 KVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSM-PLKEQLPKLRPQLEELRK 98 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccc-cchhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCh--HHHHHHhHHh--hhhccCCCHHHHHHHHHHHHHHHHh
Q psy2547 1499 LAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATL--ADIRNISGLA--VNKNIQSNPEQIRERANEINNVIKS 1574 (1807)
Q Consensus 1499 ~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~--~~i~~la~~v--l~~~i~~~~~~I~~l~~~i~~~~~~ 1574 (1807)
...+-+.+...+..+++..-.++-.....+..+..+....+ ..+..+...+ +..+...--+.+..+...|..+...
T Consensus 99 ~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~ 178 (619)
T PF03999_consen 99 EKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEE 178 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy2547 1575 LTDIDT-------------ILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQT-AKDD 1640 (1807)
Q Consensus 1575 L~~~~~-------------~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~-a~~~ 1640 (1807)
|...-. ......=.....+.|......++.+..+....++++...+..+=..++.-+..++. +...
T Consensus 179 L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~ 258 (619)
T PF03999_consen 179 LGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEEN 258 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1641 ISAARKDLSQITNDLDDAQQK-SNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQ 1719 (1807)
Q Consensus 1641 i~~~~~~l~~ie~~l~~~e~~-l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~ 1719 (1807)
-.-....|+.++.+++.++.. ...+..-|.++..+|+++=+++-...+.......-..+... +..++..+.+++
T Consensus 259 ~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~-----E~lL~~hE~Ei~ 333 (619)
T PF03999_consen 259 SGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT-----EELLELHEEEIE 333 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch-----HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2547 1720 ETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIVDK 1798 (1807)
Q Consensus 1720 ~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~~~ 1798 (1807)
.+++.+.. .+.+-+...+.+.+.++...|.....+--+-. .--..+-+-+++-..+..+|=.++++|...+.+.+.+
T Consensus 334 ~Lk~~~~~-~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~-~RGg~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e 410 (619)
T PF03999_consen 334 RLKEEYES-RKPILELVEKWESLWEEMEELEESSKDPSRLN-NRGGHLLKEEKERKRIQKKLPKLEEELKKKLEEWEEE 410 (619)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhc-ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
No 493
>PRK12705 hypothetical protein; Provisional
Probab=93.57 E-value=16 Score=47.09 Aligned_cols=165 Identities=10% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1585 TAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNE 1664 (1807)
Q Consensus 1585 ~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~ 1664 (1807)
+......++...+-.++++.+++.++ .+.+.+..+++......+++++++...+++..++++.+-++.++.-...|+.
T Consensus 25 ~~~~~~~~~~a~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~ 102 (508)
T PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKL--EAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDN 102 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2547 1665 TNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLN 1744 (1807)
Q Consensus 1665 ~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~ 1744 (1807)
.+.++...++.|...+..+.+. ..+....++..+..-.+++++..-+.-+.+-+.+....--.....-..+...
T Consensus 103 ~~~~l~~~~~~l~~~~~~~~~~------~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~~a~~ 176 (508)
T PRK12705 103 LENQLEEREKALSARELELEEL------EKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAER 176 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q psy2547 1745 KASQLSVNTTAKL 1757 (1807)
Q Consensus 1745 ~a~~l~~~~~~~~ 1757 (1807)
+++.+...+-.+.
T Consensus 177 ~A~~ii~~aiqr~ 189 (508)
T PRK12705 177 KAQNILAQAMQRI 189 (508)
T ss_pred HHHHHHHHHHHHh
No 494
>KOG3215|consensus
Probab=93.54 E-value=9.1 Score=42.00 Aligned_cols=171 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1627 QDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVAL 1706 (1807)
Q Consensus 1627 ~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ 1706 (1807)
++.+++.+..+..++...++...+.....+.+-..|...+-.+...+.-++.....+....+...+++.++..+...++.
T Consensus 35 v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~ 114 (222)
T KOG3215|consen 35 VEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKARNKIEL 114 (222)
T ss_pred HHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1707 AQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQK 1786 (1807)
Q Consensus 1707 ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~ 1786 (1807)
+++++.+ .++.++.++--.....+....--..+-...+..+.+++++....-..+...+.-...+..-+..-+.+++.
T Consensus 115 lkkql~e--aKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~klelrRkqf~~lm~~~~elQ~ 192 (222)
T KOG3215|consen 115 LKKQLHE--AKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLELRRKQFKYLMVSTEELQC 192 (222)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHhhHHHHHh
Q ss_pred HHHHHHHHHHhhh
Q psy2547 1787 RIQSCINFIVDKS 1799 (1807)
Q Consensus 1787 el~~l~~~I~~~~ 1799 (1807)
.++.=.+..-+.+
T Consensus 193 amedeedt~v~e~ 205 (222)
T KOG3215|consen 193 AMEDEEDTVVEES 205 (222)
T ss_pred hhhhhhhhHHHhc
No 495
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=93.53 E-value=3.1 Score=55.10 Aligned_cols=196 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1600 NLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSI 1679 (1807)
Q Consensus 1600 ~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~l 1679 (1807)
+-.+.+-+.....+..++.++..+++.++....+..+-..+......+ .+.+-.+.+.++.+.+....++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~lq~~~~~~~~~~~~~a~~~~~~~~~------~i~qe~~~n~~Lsq~L~~~~~r~n~~ 84 (835)
T COG3264 11 ELLQSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAE------LIQQELAINDQLSQALNQQTERLNAL 84 (835)
T ss_pred hhHHhhhhhhhhHHHHHHHHHHHHHHHhhhhcccccccchhhcccchh------hHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2547 1680 QAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDN-----------KLLSKAESSGLKRARGQMLLNKASQ 1748 (1807)
Q Consensus 1680 k~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~-----------~l~~~~~~l~~~~~r~~~l~~~a~~ 1748 (1807)
..+=.++.+...++.+....+.+++.-++-.+...+..++++.. .+++..+++.+.+..++.+..++++
T Consensus 85 ~~dd~~l~~l~~ql~q~~r~i~eq~~~lr~sL~l~~~~~~q~~~lP~~~~~~e~~~v~~eR~~L~~e~~~in~~~~~~e~ 164 (835)
T COG3264 85 ASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYINALEGQAEQ 164 (835)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHhhhHHHHHHHhcchhh
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy2547 1749 LSVNTTAKLKQLNETEAMF-NSQESELTELSKNIAELQKRIQSCINFIVDKSNNYK 1803 (1807)
Q Consensus 1749 l~~~~~~~~~~l~~Le~~i-~~~e~~le~le~el~~L~~el~~l~~~I~~~~~~Y~ 1803 (1807)
+..+..+.+..|-+..+++ .+...+. ..-.++-..+++....+++++..+.|+
T Consensus 165 ls~~~~~~ld~I~~~RReLf~~~l~~~--~~is~~l~~~q~~~~~d~l~~~~~~~~ 218 (835)
T COG3264 165 LTAEVRDILDQILDTRRELLNSLLSQR--EAISLQLNQQQLSAASDELRSLLHQQS 218 (835)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHhhc--cccCHhhhHHHHHHHHHHHHHHHHHhh
No 496
>KOG0811|consensus
Probab=93.47 E-value=20 Score=42.17 Aligned_cols=205 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1555 QSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAI 1634 (1807)
Q Consensus 1555 ~~~~~~I~~l~~~i~~~~~~L~~~~~~l~~~~~~l~~a~~L~~~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l 1634 (1807)
.....-...+...|..+......+...+...-...+.-+ |..+.+.....+..+.+++......+..... ...+
T Consensus 17 ~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~-lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-----~~~~ 90 (269)
T KOG0811|consen 17 FDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPE-LRDKLHQERLNANQLVKDTSALLKEIDTLRL-----ESDL 90 (269)
T ss_pred CcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHH
Q psy2547 1635 QTAKDDISAARKDLSQITNDLDDAQQKSNETN------------VKVKLLQERLKSIQAGFLQNGR--SAMDVENE-EKN 1699 (1807)
Q Consensus 1635 ~~a~~~i~~~~~~l~~ie~~l~~~e~~l~~~e------------~~l~~l~~~le~lk~~l~~~~~--~~~~a~~~-ae~ 1699 (1807)
+..+..++.+.++....-++...++.+..+.+ ..+.+-..+............. .......+ ++.
T Consensus 91 ~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~ 170 (269)
T KOG0811|consen 91 RQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVARGSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEILEY 170 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1700 LEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEA 1765 (1807)
Q Consensus 1700 a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~ 1765 (1807)
-...+++-++.+.+++..+-++.+..+++...+.+....+..+.+.++.....++.-.+.|....+
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~ 236 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAK 236 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG0288|consensus
Probab=93.46 E-value=2.9 Score=50.28 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2547 1669 VKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQ 1748 (1807)
Q Consensus 1669 l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~ 1748 (1807)
+..+..+..+.++++.++...+.+-..+...+..+...++.+.+.+..++...+..|..++++..+..++..+.....+.
T Consensus 1 m~~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~ 80 (459)
T KOG0288|consen 1 MAPLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKT 80 (459)
T ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1749 LSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINFIV 1796 (1807)
Q Consensus 1749 l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~~I~ 1796 (1807)
+..+.......--.+..+|.++.++-.+.+.....|...+++++....
T Consensus 81 ~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~ 128 (459)
T KOG0288|consen 81 LTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAER 128 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
No 498
>KOG0040|consensus
Probab=93.44 E-value=48 Score=46.46 Aligned_cols=562 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred cchhhhhHhHHHhHHHHHhhhhcccccCCCcchhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhh-----
Q psy2547 1180 DNWDSILRGLADQTTKVITDASNIKQTGASGAYTKEFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQI----- 1254 (1807)
Q Consensus 1180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~le~~l~~lq~lL~~~~~~~~~~~~l~~~l~~l~~~l----- 1254 (1807)
..|...|.++.-.+..+...+ ..+.+-+.|..+.++|......+..+..-+..+..+..+-
T Consensus 1593 ~~f~t~Ikd~~fwl~eve~ll--------------~~ed~~kdLasv~nlLkkhqlle~di~a~ed~~kd~n~qadSll~ 1658 (2399)
T KOG0040|consen 1593 QRFNTAIKDLEFWLSEVETLL--------------ASEDYGKDLASVGNLLKKHQLLEADIVAHEDRLKDLNTQADSLLE 1658 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q ss_pred hccCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHH
Q psy2547 1255 MNNEDPNGVGKTLGNTTQRINLARLALNDLTEEIKKLNKTG---EMLKENATLLQENNVEGALELTRQAHDTSLKLKEQS 1331 (1807)
Q Consensus 1255 ~~~~~l~~~e~~l~~~~~~~~~~~~~le~L~~el~~l~~~~---~~l~~~~~~l~~~~~~~a~~~~~~a~~~~~~a~~~~ 1331 (1807)
...-....+...+..+.+.......-.+.++..|.++.... .++..+..-+++..+........-...-+..+..+.
T Consensus 1659 s~~f~~~~i~dkr~~i~~r~~~V~~laa~~r~kl~ea~~L~qff~d~~Deeswikek~l~V~sedygrdl~gVqnl~kkh 1738 (2399)
T KOG0040|consen 1659 SGQFDTDQIVEKRDNINKRFLNVKELAAARRAKLNEALALHQFFRDIDDEESWIKEKKLLVSSDDYGRDLTGVQNLRKKH 1738 (2399)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccchhhcccchhhHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhcccchhHHHhhccCCCCCCCCCCCCCCCCC
Q psy2547 1332 TETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLCGGAGCGKC 1411 (1807)
Q Consensus 1332 ~~~~~~i~~a~~~~~~a~~ll~~~~~~~~~~~~e~~~~L~~L~~kL~~l~~~L~~l~~~icg~~~~~C~~~Cgg~~C~~C 1411 (1807)
..++..+...+...+.....-++..+...-...++...+..+......++ .+.....+-
T Consensus 1739 krle~el~~hepaiQ~v~~~~ekl~d~a~vg~~ei~~rl~~~~~~w~~lk-~la~~r~~~-------------------- 1797 (2399)
T KOG0040|consen 1739 KRLEAELAAHEPAIQNVLDMGEKLKDKAAVGVEEIQQRLAQFVEHWEELK-ELAAARGQK-------------------- 1797 (2399)
T ss_pred chhhhhhhhccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHhhhhh--------------------
Q ss_pred CCcccCCchhHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1412 GGMWCSNGTLSESNSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQ 1491 (1807)
Q Consensus 1412 gg~~C~~~a~~~a~~A~~~a~~l~~~i~e~~~~~eeL~~~~~~~~~~~~a~~~ae~a~~~l~~~~~~~~~l~~~~~~~~~ 1491 (1807)
...........+..+++..=+....-.+...++-. +...+..+..+..........-+.
T Consensus 1798 --------------------l~es~~~Q~f~~~~eeeEaWinek~~l~~~~d~gd-~laaiq~Ll~kh~a~e~d~~~hK~ 1856 (2399)
T KOG0040|consen 1798 --------------------LEESLEYQQFLANVEEEEAWINEKQQLLVSEDYGD-TLAAVQGLLKKHEAFETDFTVHKD 1856 (2399)
T ss_pred --------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-HHHHHHHHHhcCchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhHHhhhhccCCCHHHHHHHHHHHHHH
Q psy2547 1492 ESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNV 1571 (1807)
Q Consensus 1492 ~~~~a~~~A~~~~~~a~~~~~~~e~~~~~~~~l~~~lk~~l~~~~~~~~~i~~la~~vl~~~i~~~~~~I~~l~~~i~~~ 1571 (1807)
.+..+..+-..+..+.......+......++...-.++...........+-...-.+-....+...---++....+-.+.
T Consensus 1857 rV~~~~~~g~dll~~~~h~~~~I~sk~~~l~~k~~~l~~~~~~~k~kl~dn~a~~qf~wk~dVveswi~~ke~~~k~e~~ 1936 (2399)
T KOG0040|consen 1857 RVQDVCAQGEDLINKVNHHEEQISSKCEQLNEKLPSLEKAAAARKAQLEDNSAFLQFNWKADVVESWIADKENSLKTDDF 1936 (2399)
T ss_pred HHHHHHhchHHHHHHhhhhhhHHHHHHHHHhhcchhHHHHHHhHHHhhhhhHHHHHhhhhhhhhHHhhhhHHHHHHhhhh
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy2547 1572 IKSLTDIDTILTETAGDLAKANDLKR----KANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQT-AKDDISAARK 1646 (1807)
Q Consensus 1572 ~~~L~~~~~~l~~~~~~l~~a~~L~~----~a~~a~~ea~~l~~~l~~l~~~L~~a~~~~~~a~~~l~~-a~~~i~~~~~ 1646 (1807)
-..+..+...++.-..-........+ .+..+++.+......-.+....+..+-..+.....+... +++.+=+.+.
T Consensus 1937 G~dl~~~q~ll~kQ~T~dasl~aF~QE~~~~itelkdql~~a~hnQSdAi~kr~l~l~~rw~~l~~~s~~~~kkLLe~Q~ 2016 (2399)
T KOG0040|consen 1937 GRDLSSVQTLLTKQETFDAGLQAFQQEGIPNITALKDQLISAQHNQSKAIEKRHAALIKRWQQLLAASAARRQKLLEMQS 2016 (2399)
T ss_pred hhhHHhhhhHhhHHHHHHhhhhhhHHHhHhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy2547 1647 DLSQITNDLDDAQQKSNETNVKVKLLQERLKSI--------QAGFLQNGRSAMDVENEEKNLEKEVALAQKQAS------ 1712 (1807)
Q Consensus 1647 ~l~~ie~~l~~~e~~l~~~e~~l~~l~~~le~l--------k~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~------ 1712 (1807)
.+..++........+.+....--...+..+... ...+...-..+.....++...-..+..+...+.
T Consensus 2017 ~fkk~ee~~l~faKkaSafNwwfenaEE~l~~~~~~ns~~Ei~~l~~~h~~f~~sls~a~~df~~l~~ld~~iks~~v~~ 2096 (2399)
T KOG0040|consen 2017 QFRKIEDLFLTFAKKASAFNSWFENAEEDLTDPVRCNSLEEIRALRDAHEDFQASLSSAQADFKQLAELDQQIKSFNVGS 2096 (2399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhHhcccccccccchHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhcCCCC
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy2547 1713 ---------GLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQ-ESELTELSKNIA 1782 (1807)
Q Consensus 1713 ---------el~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~-e~~le~le~el~ 1782 (1807)
.|+...+.+.+.+++....+..-..|...-..--+.+...+..-.+=|.+..+.+... .-.|++..+.+.
T Consensus 2097 ~pytw~t~e~Le~tw~~L~~iI~eR~~el~~E~~Rq~~N~klc~efa~~a~tfh~wi~etr~el~~~~sgtLE~Qleal~ 2176 (2399)
T KOG0040|consen 2097 NPYTWFTMEALEETWRNLQQIISERERELDKEISRQEENDKLCEEFACTANTFHQWIVETRKELEDGESGTLEDQLEALK 2176 (2399)
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHh
Q psy2547 1783 ELQKRIQSCINFIVD 1797 (1807)
Q Consensus 1783 ~L~~el~~l~~~I~~ 1797 (1807)
.+.++|+..+-.|+.
T Consensus 2177 ~k~~evqa~rg~l~~ 2191 (2399)
T KOG0040|consen 2177 RKIKEVQAMRGQLQK 2191 (2399)
T ss_pred HHHHHHHHHHHHHHH
No 499
>KOG2751|consensus
Probab=93.41 E-value=2.4 Score=51.52 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy2547 1658 AQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRA 1737 (1807)
Q Consensus 1658 ~e~~l~~~e~~l~~l~~~le~lk~~l~~~~~~~~~a~~~ae~a~~~a~~ae~~l~el~~~l~~~~~~l~~~~~~l~~~~~ 1737 (1807)
.+.-++.+..+++.++.+.+..++-++.+++.-... +.++...+.+.++.+-+++.+++++++++-.+....+.+.+.
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1738 RGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRI 1788 (1807)
Q Consensus 1738 r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el 1788 (1807)
+..++.++...+-++......++=+.+.++..++.+++-...++..|.+..
T Consensus 219 ~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 219 KAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
No 500
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.40 E-value=1.1 Score=50.60 Aligned_cols=82 Identities=10% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2547 1714 LRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCIN 1793 (1807)
Q Consensus 1714 l~~~l~~~~~~l~~~~~~l~~~~~r~~~l~~~a~~l~~~~~~~~~~l~~Le~~i~~~e~~le~le~el~~L~~el~~l~~ 1793 (1807)
+..++.++++++++.++++.....+.. ++...+.+++....+.+.+|+++.+++.++++.+..++..|+.+++.+.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhh
Q psy2547 1794 FIVDK 1798 (1807)
Q Consensus 1794 ~I~~~ 1798 (1807)
.+..+
T Consensus 168 ~~~~~ 172 (206)
T PRK10884 168 TIIMQ 172 (206)
T ss_pred HHHHH
Done!