RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2547
(1807 letters)
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 503 bits (1297), Expect = e-162
Identities = 298/524 (56%), Positives = 370/524 (70%), Gaps = 9/524 (1%)
Query: 27 QLPQPISSCERKSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLEDKKKCFTCNS 86
Q P+ C SCYPATG+LLIGR KL +STCGLH +CIVS L++ KKCF C+S
Sbjct: 5 QEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDS 64
Query: 87 S-PRFDNNPAFSHKIHNIVYATVPRTKTISWWQSENGVENVTIQLDMEAEFHFTHLIIYF 145
P + SH I N+V P WWQSENGVENVTIQLD+EAEFHFTHLI+ F
Sbjct: 65 RDPYHETLNPDSHLIENVVTTFAPNRLK-IWWQSENGVENVTIQLDLEAEFHFTHLIMTF 123
Query: 146 KTFRPAAMLIERSHDFGKTWQVYRYFAADCAKSFPGIPRDGLRKLTDVYCESRYSSNNPS 205
KTFRPAAMLIERS DFGK W VYRYFA DC SFPGI ++K+ D+ C+SRYS PS
Sbjct: 124 KTFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMKKVDDIICDSRYSDIEPS 183
Query: 206 SGGEVILRVLPPSLHHSNIDPYSSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQIQEKY 265
+ GEVI R L P+ DPYS +QNL+K+TNLRI F KLHTLGD+LLD+R +I+EKY
Sbjct: 184 TEGEVIFRALDPAFKIE--DPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIREKY 241
Query: 266 YYAITQMIVRGSCSCYGHASRCLPISEA-DTKPDMVHGRCECTHNTQGLNCEKCIDFYND 324
YYA+ M+VRG+C CYGHAS C P+ + MVHG C C HNT+GLNCE C+DFY+D
Sbjct: 242 YYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHD 301
Query: 325 LPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCK 384
LPW+PA G +NACK+CNCN HS+ CHFD AV+ +TG +SGGVCD+C+HNT GRNCE+CK
Sbjct: 302 LPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCK 361
Query: 385 QYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDV--LVSGKCHCKPNVGGRRCD 442
++++ P ++ DP +C C CDP GS + GICD YTD L++G+C CK +V G RCD
Sbjct: 362 PFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCD 421
Query: 443 MCKDGFWNFNETNPNGCEPCTCNIQGTI-NSQGCNKDTGDCTCKRNVEGRDCNQCLPHFW 501
+CK+GF++ + +P GC+ C CN GTI C+ +TG C CKR V G+ C+QCLP W
Sbjct: 422 VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHW 481
Query: 502 GLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCS 545
GLS + GC+PCDCD G + +N+C SGQC C PH GR C+
Sbjct: 482 GLSNDLD-GCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 187 bits (475), Expect = 2e-50
Identities = 90/359 (25%), Positives = 126/359 (35%), Gaps = 87/359 (24%)
Query: 788 LGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKA-CDCN--------HVGALDNICDVVSG 838
N++ R + Y + C C G + + +V G
Sbjct: 220 FVKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHG 279
Query: 839 QCKCRAQTYGRECDQCSPGYWNYP----------TCQRCICNGHADLC-----------D 877
C CR T G C+ C Y + P C++C CN H+ C +
Sbjct: 280 HCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGN 339
Query: 878 SKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIP--CRPCPCPGT-VESGLSYADTCQ 934
G C +C+++T G NCE+C Y+ P I P C PC C E+G
Sbjct: 340 VSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTD 399
Query: 935 LDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLT 994
C CK G RCD C + ++ E C+ C C
Sbjct: 400 FSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCAC---------------- 443
Query: 995 GKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPN 1054
N LG PCD TG C C
Sbjct: 444 ------------------------------------NPLGTIPGGNPCDSETGYCYCKRL 467
Query: 1055 VIGVSCDRCLKNHWKIASGT-GCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQ 1112
V G CD+CL HW +++ GC PCDCD G+++ + C+E +GQC C GRQC++
Sbjct: 468 VTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNS-CSEDSGQCSCLPHMIGRQCNE 525
Score = 177 bits (451), Expect = 3e-47
Identities = 73/310 (23%), Positives = 109/310 (35%), Gaps = 57/310 (18%)
Query: 767 HHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHV 826
+ A+EC G + + G+C+C+ N G C+ C +
Sbjct: 257 YGHASECAPVD-GVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHD-------------- 301
Query: 827 GALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLC---------- 876
N C++C CN H+ C
Sbjct: 302 ------------------------LPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLAT 337
Query: 877 -DSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIP--CRPCPCPGT-VESGLSYADT 932
+ G C +C+++T G NCE+C Y+ P I P C PC C E+G
Sbjct: 338 GNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGY 397
Query: 933 CQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDT 992
C CK G RCD C + ++ E C+ C C+ + CD+
Sbjct: 398 TDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDS 457
Query: 993 LTGKCLQCRYDTEGDHCQVCKAGFFGNAL-EQNCTECTCNILGIDHSKGPCDRTTGQCPC 1051
TG C C+ G C C +G + C C C++ G C +GQC C
Sbjct: 458 ETGYC-YCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGG--ALNNSCSEDSGQCSC 514
Query: 1052 LPNVIGVSCD 1061
LP++IG C+
Sbjct: 515 LPHMIGRQCN 524
Score = 177 bits (450), Expect = 3e-47
Identities = 75/303 (24%), Positives = 118/303 (38%), Gaps = 33/303 (10%)
Query: 886 CRNSTDGENCERCINGYYGDPRLGIDIPCR-PCPCPGTVESGLSYADTCQLDPRSQDVIC 944
++ E YY D+ R C C G + C
Sbjct: 226 LGDNLLDSRMEIREKYYYAVY----DMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHC 281
Query: 945 ECKEGYRGTRCDGCLDNYFGNPQERGGS-----CEPCDCSNNTD------LALPGNCDTL 993
C+ +G C+ C+D Y P C+ C+C+ ++ +
Sbjct: 282 MCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVS 341
Query: 994 TGKCLQCRYDTEGDHCQVCKAGFFGNA-----LEQNCTECTCNILG-------IDHSKGP 1041
G C C+++T G +C+ CK +F + C CTC+ G ++
Sbjct: 342 GGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFS 401
Query: 1042 CDRTTGQCPCLPNVIGVSCDRCLKNHW--KIASGTGCEPCDCDPIGSVDVTE-CNEYTGQ 1098
GQC C +V G CD C + + GC+ C C+P+G++ C+ TG
Sbjct: 402 VGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGY 461
Query: 1099 CQCKSGFGGRQCDQCQTNFWGNPNVE--CFPCDCDPSGSATSQCHQNNGTCVCHQGIGGV 1156
C CK G++CDQC WG N C PCDCD G+ + C +++G C C + G
Sbjct: 462 CYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGR 521
Query: 1157 RCD 1159
+C+
Sbjct: 522 QCN 524
Score = 160 bits (405), Expect = 2e-41
Identities = 69/221 (31%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 278 CSCYGHASRCLPISEADTKPDMVHGRC--ECTHNTQGLNCEKCIDFYNDLPWKPAFGSQT 335
C+C H+S C V G C HNT G NCE+C FY P +
Sbjct: 318 CNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERD--IRDP 375
Query: 336 NACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEF 395
N C+ C C+ ++ Y C+ + EG C+ CK+ FY
Sbjct: 376 NLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSA--- 432
Query: 396 SDPEVCLRCDCDPGGSLD-DGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNET 454
DP C C C+P G++ CD T G C+CK V G+RCD C W +
Sbjct: 433 EDPYGCKSCACNPLGTIPGGNPCDSET------GYCYCKRLVTGQRCDQCLPQHWGLSN- 485
Query: 455 NPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQ 495
+ +GC PC C++ G +N+ C++D+G C+C ++ GR CN+
Sbjct: 486 DLDGCRPCDCDLGGALNNS-CSEDSGQCSCLPHMIGRQCNE 525
Score = 118 bits (297), Expect = 1e-27
Identities = 52/168 (30%), Positives = 69/168 (41%), Gaps = 25/168 (14%)
Query: 753 EACKKQHY---SIGMYVHHGANECDCDPTGS---------TSKYCDQLGGNCVCKPNVVG 800
E CK ++ + + C CDP GS T + G C CK +V G
Sbjct: 358 EQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEG 417
Query: 801 RRCDRCAPGTYGF---GPEGCKACDCNHVGALDN--ICDVVSGQCKCRAQTYGRECDQCS 855
RCD C G Y P GCK+C CN +G + CD +G C C+ G+ CDQC
Sbjct: 418 ERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCL 477
Query: 856 PGYWNYPT----CQRCICNGHA---DLCDSKTGTCISCRNSTDGENCE 896
P +W C+ C C+ + C +G C SC G C
Sbjct: 478 PQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQC-SCLPHMIGRQCN 524
Score = 103 bits (257), Expect = 1e-22
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 753 EACKKQHYSIGMYVHHGANECDCDPTGSTSKY--CDQLGGNCVCKPNVVGRRCDRCAPGT 810
+ CK+ Y + +G C C+P G+ CD G C CK V G+RCD+C P
Sbjct: 421 DVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQH 480
Query: 811 YGF--GPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQ 853
+G +GC+ CDC+ GAL+N C SGQC C GR+C++
Sbjct: 481 WGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 96.7 bits (240), Expect = 1e-20
Identities = 54/223 (24%), Positives = 84/223 (37%), Gaps = 31/223 (13%)
Query: 362 RISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSL-DDGICDPY 420
RI + N E ++Y+Y D V C C S
Sbjct: 217 RIKFVKLHTLGDNLLDSRMEIREKYYY-----AVYDMVVRGNCFCYGHASECAPVDGVNE 271
Query: 421 TDDVLVSGKCHCKPNVGGRRCDMCKDGFWNF-----NETNPNGCEPC-------TCNIQG 468
+ +V G C C+ N G C++C D + + N N C+ C +C+
Sbjct: 272 EVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDM 331
Query: 469 TINSQGCNKDTGDC-TCKRNVEGRDCNQCLPHFWG---LSESEEYGCKPCDCDPGASY-- 522
+ N G C C+ N GR+C QC P ++ + C+PC CDP S
Sbjct: 332 AVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENG 391
Query: 523 -------DNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYDN 558
D + +I+GQC+CK H G C ++ +Y ++
Sbjct: 392 GICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAED 434
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 305 bits (783), Expect = 4e-93
Identities = 105/387 (27%), Positives = 168/387 (43%), Gaps = 36/387 (9%)
Query: 35 CERKSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLED-KKKCFTCNSSPRFDNN 93
+ C P N + A++TCG +C+ + + K C C++
Sbjct: 14 GRPQRCMPEFVNAAFNVT--VVATNTCGTPP-EEYCVQTGVTGVTKSCHLCDAG-----Q 65
Query: 94 PAFSHKIHNIVYATVPRTKTISWWQSENGVE------NVTIQLDMEAEFHFTHLIIYFKT 147
H + T WWQS+ + ++ + L + F T++ + F T
Sbjct: 66 QHLQHGAAFLTDYNNQADTT--WWQSQTMLAGVQYPNSINLTLHLGKAFDITYVRLKFHT 123
Query: 148 FRPAAMLIERSHDFGKTWQVYRYFAADCAKSFPGIPRDGLRKLTD---VYCESRYSSNNP 204
RP + I + W Y+Y++ C ++ R +R D C +S +P
Sbjct: 124 SRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISP 183
Query: 205 SSGGEVILRVLPPSLHHSNIDPYSSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQIQEK 264
+GG V L N S +Q + T++R+ +L+T GD++ + + ++
Sbjct: 184 LTGGNVAFSTLEGRPSAYN-FDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNEPKVLK-S 241
Query: 265 YYYAITQMIVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYND 324
YYYAI+ V G C C GHAS C+ + C C HNT G++CEKC+ F+ND
Sbjct: 242 YYYAISDFAVGGRCKCNGHASECVK-------NEFDKLMCNCKHNTYGVDCEKCLPFFND 294
Query: 325 LPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCK 384
PW+ A + C C+CN S +C+FD +Y STG GG C +C NT+G CERC+
Sbjct: 295 RPWRRATAESASECLPCDCNGRSQECYFDPELYRSTG--HGGHCTNCRDNTDGAKCERCR 352
Query: 385 QYFYKDPNKEFSDPEVCLRCDCDPGGS 411
+ F++ N E C
Sbjct: 353 ENFFRLGN-----TEACSPAAAHHHHH 374
Score = 100 bits (249), Expect = 2e-22
Identities = 33/152 (21%), Positives = 48/152 (31%), Gaps = 23/152 (15%)
Query: 790 GNCVCKPNVVGRRCDRCAPGTYGFG-PEGCKACDCNHVGALDNICDVVSGQCKCRAQTYG 848
+ V Y C CN + + C C+ TYG
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYG 282
Query: 849 RECDQCSPGYWNYP----------TCQRCICNGHADLC---------DSKTGTCISCRNS 889
+C++C P + + P C C CNG + C G C +CR++
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDN 342
Query: 890 TDGENCERCINGYYGDPRLGIDIPCRPCPCPG 921
TDG CERC ++ C P
Sbjct: 343 TDGAKCERCRENFFRLGN---TEACSPAAAHH 371
Score = 97.1 bits (241), Expect = 3e-21
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 13/153 (8%)
Query: 318 CIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEG 377
+ L S +C CN H+++C +E + +C+HNT G
Sbjct: 232 VFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNE---------FDKLMCNCKHNTYG 282
Query: 378 RNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVS-GKC-HCKPN 435
+CE+C +F P + + CD G + DP G C +C+ N
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDN 342
Query: 436 VGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQG 468
G +C+ C++ F F N C P +
Sbjct: 343 TDGAKCERCRENF--FRLGNTEACSPAAAHHHH 373
Score = 89.4 bits (221), Expect = 1e-18
Identities = 47/217 (21%), Positives = 76/217 (35%), Gaps = 27/217 (12%)
Query: 318 CIDFYNDL-PWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTE 376
C D ++D+ P + + + + N E V + R++ ++
Sbjct: 174 CTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEV- 232
Query: 377 GRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNV 436
+ K Y+Y SD V RC C+ S C D L+ C+CK N
Sbjct: 233 FNEPKVLKSYYY-----AISDFAVGGRCKCNGHASE----CVKNEFDKLM---CNCKHNT 280
Query: 437 GGRRCDMCKDGFWNF-----NETNPNGCEPCTCNIQGTINS-----QGCNKDTGDCT-CK 485
G C+ C F + + + C PC CN + G CT C+
Sbjct: 281 YGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCR 340
Query: 486 RNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASY 522
N +G C +C +F+ L +E C P +
Sbjct: 341 DNTDGAKCERCRENFFRLGNTE--ACSPAAAHHHHHH 375
Score = 87.5 bits (216), Expect = 4e-18
Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 21/192 (10%)
Query: 849 RECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRL 908
+ P +N+ A + + E + + YY
Sbjct: 191 FSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNE-PKVLKSYYYAISDF 249
Query: 909 GIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQE 968
+ C C G +A C + + ++C CK G C+ CL + P
Sbjct: 250 AV---GGRCKCNG-------HASECVKNEFDK-LMCNCKHNTYGVDCEKCLPFFNDRPWR 298
Query: 969 RG-----GSCEPCDCSNNTDL----ALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGN 1019
R C PCDC+ + G C CR +T+G C+ C+ FF
Sbjct: 299 RATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRL 358
Query: 1020 ALEQNCTECTCN 1031
+ C+ +
Sbjct: 359 GNTEACSPAAAH 370
Score = 81.4 bits (200), Expect = 4e-16
Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 20/159 (12%)
Query: 993 LTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSK--GPCDRTTGQCP 1050
+T L D + +V K+ ++ + C CN H+ + C
Sbjct: 220 VTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCN----GHASECVKNEFDKLMCN 275
Query: 1051 CLPNVIGVSCDRCLKNHWKIASGTG-------CEPCDCDPIGSV-----DVTECNEYTGQ 1098
C N GV C++CL C PCDC+ ++ + G
Sbjct: 276 CKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGH 335
Query: 1099 CQ-CKSGFGGRQCDQCQTNFWGNPNVE-CFPCDCDPSGS 1135
C C+ G +C++C+ NF+ N E C P
Sbjct: 336 CTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAHHHHH 374
Score = 80.2 bits (197), Expect = 9e-16
Identities = 32/216 (14%), Positives = 55/216 (25%), Gaps = 22/216 (10%)
Query: 888 NSTDGENCERCINGY-YGDPRLGIDIPCRPCPCPGTVE----SGLSYADTCQLDPRSQDV 942
+ E C + + P G ++ + S + D R
Sbjct: 164 RTGGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLN 223
Query: 943 ICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRY 1002
Y+ C C+ + + + C++
Sbjct: 224 RLNTFGDEVFNEPKVLKSYYYAIS--DFAVGGRCKCNGHASECVK---NEFDKLMCNCKH 278
Query: 1003 DTEGDHCQVCKAGFFGNALEQ-------NCTECTCNILG----IDHSKGPCDRTTGQCP- 1050
+T G C+ C F + C C CN D G C
Sbjct: 279 NTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTN 338
Query: 1051 CLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGS 1086
C N G C+RC +N +++ + C P
Sbjct: 339 CRDNTDGAKCERCRENFFRLGNTEACSPAAAHHHHH 374
Score = 67.9 bits (165), Expect = 1e-11
Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 18/146 (12%)
Query: 1047 GQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFG 1106
+ + + ++ I+ C C+ S V + C CK
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECV-KNEFDKLMCNCKHNTY 281
Query: 1107 GRQCDQCQTNFWGNP--------NVECFPCDCDPSGS------ATSQCHQNNGTCV-CHQ 1151
G C++C F P EC PCDC+ + + G C C
Sbjct: 282 GVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRD 341
Query: 1152 GIGGVRCDTCARGY--IGTAPDCSPC 1175
G +C+ C + +G CSP
Sbjct: 342 NTDGAKCERCRENFFRLGNTEACSPA 367
Score = 62.9 bits (152), Expect = 4e-10
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 737 RCGDSYITVYRGVPIPEACKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCV-CK 795
+C + + + + + EC DP GG+C C+
Sbjct: 287 KCLPFF---NDRPWRRATAESASECLPCDCNGRSQECYFDPELYR---STGHGGHCTNCR 340
Query: 796 PNVVGRRCDRCAPGTYGFG-PEGCKACDCNHVG 827
N G +C+RC + G E C +H
Sbjct: 341 DNTDGAKCERCRENFFRLGNTEACSPAAAHHHH 373
Score = 58.2 bits (140), Expect = 1e-08
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 15/147 (10%)
Query: 421 TDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTG 480
TD + + + + + K ++ ++ C CN + D
Sbjct: 216 TDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISD--FAVGGRCKCNGHAS-ECVKNEFDKL 272
Query: 481 DCTCKRNVEGRDCNQCLPHFWGL-----SESEEYGCKPCDCDPGAS---YDNNCDVISGQ 532
C CK N G DC +CLP F + C PCDC+ + +D +G
Sbjct: 273 MCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGH 332
Query: 533 ----CKCKPHASGRTCSTPEQSYYSPP 555
C+ + G C ++++
Sbjct: 333 GGHCTNCRDNTDGAKCERCRENFFRLG 359
Score = 40.1 bits (93), Expect = 0.006
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 1087 VDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFP-CDCDPSGSATSQCHQNNG 1145
V T+ + + ++ ++ + C C+ S + +
Sbjct: 213 VTATDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKL 272
Query: 1146 TCVCHQGIGGVRCDTCARGY------IGTAPDCSPCGEC 1178
C C GV C+ C + TA S C C
Sbjct: 273 MCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPC 311
Score = 39.8 bits (92), Expect = 0.008
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 3/94 (3%)
Query: 480 GDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHA 539
+ + +++ +S+ C C+ AS + C CK +
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISD--FAVGGRCKCNGHASECVKNEFDKLMCNCKHNT 280
Query: 540 SGRTCSTPEQSYYSPPYDNFLYEAENANCKTDKC 573
G C + P+ E+ + C C
Sbjct: 281 YGVDCEKCLPFFNDRPWRRATAESAS-ECLPCDC 313
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 292 bits (747), Expect = 6e-88
Identities = 114/416 (27%), Positives = 184/416 (44%), Gaps = 56/416 (13%)
Query: 31 PISSCERKSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLEDK------------ 78
P++ + S +P NL G ++ AS+TCG + +
Sbjct: 2 PLAGGDGFSLHPPYFNLAEGA--RITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGD 59
Query: 79 -------KKCFTCNSSPRFDNNPAFSHKIHNIVYATVPRTKTISWWQSEN-----GVENV 126
+ C C ++ N +H + N + T WWQS V
Sbjct: 60 PAQTIQGQYCDICTAA-----NSNKAHPVSNAIDGTE------RWWQSPPLSRGLEYNEV 108
Query: 127 TIQLDMEAEFHFTHLII-YFKTFRPAAMLIERSHDFGKTWQVYRYFAA---DCAKSFPGI 182
+ LD+ FH +++I + + RP ++ERS DFG T+Q +++FA+ DC + F
Sbjct: 109 NVTLDLGQVFHVAYVLIKFANSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPR 168
Query: 183 PRDGLRKLTDVYCESRYSSNNPSSGGEVILRVLPPSLHHSNIDPYSSDVQNLIKMTNLRI 242
+ + + DV C + YS P GE+++ ++ N YS +++ K TN+R+
Sbjct: 169 TLERITQDDDVICTTEYSRIVPLENGEIVVSLVNGRPGALN-FSYSPLLRDFTKATNIRL 227
Query: 243 NFTKLHTLGDDLLDTRR---QIQEKYYYAITQMIVRGSCSCYGHASRCLPISEADTKPDM 299
F + +TL L+ + +YYY+I + + G C C+GHA C D
Sbjct: 228 RFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDA----KDPLDP 283
Query: 300 VHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNS 359
+C C HNT G +C++C +N PWKPA N C+ CNC+ H+ C++D V
Sbjct: 284 FRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRR 343
Query: 360 TGRIS-------GGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDP 408
+ GGVC C+H+T G NCERC F++ P++ P VC
Sbjct: 344 EASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHH 399
Score = 90.3 bits (223), Expect = 7e-19
Identities = 41/172 (23%), Positives = 60/172 (34%), Gaps = 37/172 (21%)
Query: 787 QLGGNCVCKPNVVGRRCDRCAPGTYGF----GPEGCKACDCN---HVGALDNICDVVSGQ 839
+ +++G+ + C C+ V + D Q
Sbjct: 228 RFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQ 287
Query: 840 CKCRAQTYGRECDQCSPGYWNYP----------TCQRCICNGHADLC------------- 876
C C+ T G CD+C PG+ P CQ C C+GHA C
Sbjct: 288 CACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQ 347
Query: 877 -----DSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIP--CRPCPCPG 921
G C+ C++ T G NCERC+ G++ P +D P CRP
Sbjct: 348 NQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHH 399
Score = 86.9 bits (214), Expect = 9e-18
Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 32/174 (18%)
Query: 368 CDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVS 427
R+ ++Y+Y D + RC C +CD
Sbjct: 235 LLGHLMGKALRDPTVTRRYYYS-----IKDISIGGRCVCHGHAD----VCDAKDPLDPFR 285
Query: 428 GKCHCKPNVGGRRCDMCKDGFWNF-----NETNPNGCEPCTCN--------------IQG 468
+C C+ N G CD C GF + N C+ C C+ +
Sbjct: 286 LQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREA 345
Query: 469 TINSQGCNKDTGDCT-CKRNVEGRDCNQCLPHFWGLSE---SEEYGCKPCDCDP 518
+ N + G C C+ + G +C +CLP F+ + + C+P
Sbjct: 346 SQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHH 399
Score = 79.5 bits (195), Expect = 2e-15
Identities = 40/191 (20%), Positives = 63/191 (32%), Gaps = 52/191 (27%)
Query: 851 CDQCSPGYWNYPTCQRCICNGHADLCDSKTGT-----CISCRNSTDGENCERCINGYYGD 905
+ + RC+C+GHAD+CD+K +C+++T G +C+RC G+
Sbjct: 250 TRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQ 309
Query: 906 PRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGN 965
P P T +S EC+ C +
Sbjct: 310 P-----------WKPATTDSA-----------------NECQSCNCHGHAYDCYYD---- 337
Query: 966 PQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNAL---- 1021
+ + S N D N G CL C++ T G +C+ C GFF
Sbjct: 338 -----PEVDRREASQNQD-----NVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLD 387
Query: 1022 -EQNCTECTCN 1031
C +
Sbjct: 388 SPHVCRPAAAH 398
Score = 72.2 bits (176), Expect = 4e-13
Identities = 26/196 (13%), Positives = 42/196 (21%), Gaps = 39/196 (19%)
Query: 944 CECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYD 1003
G Y+ C C + D+ + C+++
Sbjct: 236 LGHLMGKALRDPTVTRRYYYSIKD--ISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHN 293
Query: 1004 TEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRC 1063
T G C C GF + S C
Sbjct: 294 TCGGSCDRCCPGFNQQPWKP----------ATTDSANECQSCNCHGHAYDCY-------- 335
Query: 1064 LKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQ-CKSGFGGRQCDQCQTNFWGNPN 1122
+P S + + G C C+ G C++C F+ P+
Sbjct: 336 ------------YDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPD 383
Query: 1123 VE------CFPCDCDP 1132
C P
Sbjct: 384 QPLDSPHVCRPAAAHH 399
Score = 67.2 bits (163), Expect = 2e-11
Identities = 39/233 (16%), Positives = 62/233 (26%), Gaps = 50/233 (21%)
Query: 858 YWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPC 917
+ P + + L +T T + + YY + I C
Sbjct: 210 FSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISI---GGRC 266
Query: 918 PCPGTVESGLSYADTCQLDPRSQDVI--CECKEGYRGTRCDGCLDNYFGNPQERGGSCEP 975
C G +AD C C C+ G CD C + P + +
Sbjct: 267 VCHG-------HADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSA 319
Query: 976 CDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGI 1035
+C G C YD E D + + N +
Sbjct: 320 NEC----------QSCNCHGHAYDCYYDPEVDRRE-----------------ASQNQDNV 352
Query: 1036 DHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWK-----IASGTGCEPCDCDP 1083
G C C + G++C+RCL ++ + S C P
Sbjct: 353 YQGGGVC------LDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHH 399
Score = 60.3 bits (145), Expect = 3e-09
Identities = 25/160 (15%), Positives = 40/160 (25%), Gaps = 33/160 (20%)
Query: 1049 CPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGS--VDVTECNEYTGQCQCKSGFG 1106
L + ++ I + C C + + QC C+
Sbjct: 236 LGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTC 295
Query: 1107 GRQCDQCQTNFWGNP-----NVECFPCDCDPSGSATSQCH------------------QN 1143
G CD+C F P C C+ Q
Sbjct: 296 GGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQG 355
Query: 1144 NGTCV-CHQGIGGVRCDTCARGY-------IGTAPDCSPC 1175
G C+ C G+ C+ C G+ + + C P
Sbjct: 356 GGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPA 395
Score = 54.9 bits (131), Expect = 1e-07
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 278 CSCYGHASRCLPISEADTKP--------DMVHGRC-ECTHNTQGLNCEKCIDFYNDLPWK 328
C+C+GHA C E D + G C +C H+T G+NCE+C+ + P +
Sbjct: 325 CNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQ 384
Query: 329 PAFGSQTNACKQCNCNNHSTKCH 351
P + C+ ++H H
Sbjct: 385 P--LDSPHVCRPAAAHHHH--HH 403
Score = 47.6 bits (112), Expect = 3e-05
Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 24/156 (15%)
Query: 424 VLVSGKCHCKPNVGGRRCDMCKDGFWNFNE-TNPNGCEPCTCNIQGTINSQGCNKDTGD- 481
+ ++ G+ + + + C C+ + D
Sbjct: 227 LRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRL 286
Query: 482 -CTCKRNVEGRDCNQCLPHFWGL-----SESEEYGCKPCDCDPGAS---YDNNCDVISGQ 532
C C+ N G C++C P F + C+ C+C A YD D
Sbjct: 287 QCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREAS 346
Query: 533 -------------CKCKPHASGRTCSTPEQSYYSPP 555
C+ H +G C ++ P
Sbjct: 347 QNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAP 382
Score = 36.8 bits (84), Expect = 0.061
Identities = 12/92 (13%), Positives = 20/92 (21%), Gaps = 4/92 (4%)
Query: 1093 NEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVE-CFPCDCDPSGS---ATSQCHQNNGTCV 1148
G R + ++ ++ C C A C
Sbjct: 230 LRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCA 289
Query: 1149 CHQGIGGVRCDTCARGYIGTAPDCSPCGECFD 1180
C G CD C G+ + +
Sbjct: 290 CQHNTCGGSCDRCCPGFNQQPWKPATTDSANE 321
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 269 bits (689), Expect = 9e-80
Identities = 88/434 (20%), Positives = 146/434 (33%), Gaps = 78/434 (17%)
Query: 34 SCERKSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLEDKKKCFTCNSSPRFDNN 93
+ +C P + ++ + KL TFC + C++S
Sbjct: 44 VWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMG--NPYMCNNECDAS-----T 96
Query: 94 PAFSHKIHNIVYATVPRTKTISWWQSENGVE-----NVTIQLDMEAEFHFT-HLIIYFKT 147
P +H + T +WQS E V I L T +++I F++
Sbjct: 97 PELAHPPELMFDFEGRHPST--FWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFES 154
Query: 148 FRPAAMLIERSHDFGKTWQVYRYFAADCAKSFPGIPRDGL----RKLTDVYCESRYSSNN 203
RP M++E+S D+G+TWQ Y+Y+A DC +F P+ + ++ C YS+
Sbjct: 155 GRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGY 214
Query: 204 PSSGGEVILRVLPPSLHHSNID-----------PYSSDVQNLIKMTNLRINFTKLHTLGD 252
++ + + + + +++ +T+LRI +
Sbjct: 215 TTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEI 274
Query: 253 DLLDTRRQIQEKYYYAITQMIVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQG 312
+Y+YAI+ + VRG C C HA+ C+ D CEC HNT G
Sbjct: 275 F---VDELHLARYFYAISDIKVRGRCKCNLHATVCVY--------DNSKLTCECEHNTTG 323
Query: 313 LNCEKCIDFYNDLPWKPA-----FGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGV 367
+C KC Y PW P NAC + + C + + G V
Sbjct: 324 PDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNV 383
Query: 368 CDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVS 427
C G CE+ + C+ GS C +
Sbjct: 384 RCLCPAAYTGILCEKLR---------------------CEEAGS-----CGSDS------ 411
Query: 428 GKCHCKPNVGGRRC 441
G+
Sbjct: 412 GQGAPPHGTHHHHH 425
Score = 81.8 bits (201), Expect = 5e-16
Identities = 41/268 (15%), Positives = 59/268 (22%), Gaps = 71/268 (26%)
Query: 843 RAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGY 902
A G + Y T ++ + D + R +
Sbjct: 229 FAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARY---F 285
Query: 903 YGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNY 962
Y + + C C +A C + + CEC+ G C C NY
Sbjct: 286 YAISDIKV---RGRCKCNL-------HATVC--VYDNSKLTCECEHNTTGPDCGKCKKNY 333
Query: 963 FGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALE 1022
G P G + N C VC +
Sbjct: 334 QGRPWSPGSYLPIPKGAAN-----------------ACIPSISSIGTNVC---------D 367
Query: 1023 QNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCD 1082
C G C +C C +G CE C+
Sbjct: 368 NELLHCQNG--------GTCHN-NVRCLCPAAY----------------TGILCEKLRCE 402
Query: 1083 PIGSVDVTECNEYTGQCQCKSGFGGRQC 1110
GS C +GQ G
Sbjct: 403 EAGS-----CGSDSGQGAPPHGTHHHHH 425
Score = 79.5 bits (195), Expect = 2e-15
Identities = 29/160 (18%), Positives = 43/160 (26%), Gaps = 32/160 (20%)
Query: 395 FSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFW----- 449
SD +V RC C+ + +C C C+ N G C CK +
Sbjct: 288 ISDIKVRGRCKCNLHAT----VCVY----DNSKLTCECEHNTTGPDCGKCKKNYQGRPWS 339
Query: 450 -----NFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLS 504
+ N C P + I + C+ + C C + G
Sbjct: 340 PGSYLPIPKGAANACIPSISS----IGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTG-- 393
Query: 505 ESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTC 544
C+ C+ S C SGQ
Sbjct: 394 ----ILCEKLRCEEAGS----CGSDSGQGAPPHGTHHHHH 425
Score = 78.7 bits (193), Expect = 4e-15
Identities = 32/228 (14%), Positives = 47/228 (20%), Gaps = 67/228 (29%)
Query: 831 NICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCI-SCRNS 889
++ + + + RC CN HA +C C ++
Sbjct: 261 DLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHN 320
Query: 890 TDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEG 949
T G +C +C Y G P P P + C
Sbjct: 321 TTGPDCGKCKKNYQGR-------PWSPGSY----------------LPIPKGAANACIPS 357
Query: 950 YRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHC 1009
+ C E C N G C C G C
Sbjct: 358 ISSIGTNVCD-------------NELLHCQNG------GTCH--NNVRCLCPAAYTGILC 396
Query: 1010 QVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIG 1057
+ + C G C +GQ
Sbjct: 397 EKLR-----------C-----------EEAGSCGSDSGQGAPPHGTHH 422
Score = 74.1 bits (181), Expect = 1e-13
Identities = 38/246 (15%), Positives = 66/246 (26%), Gaps = 49/246 (19%)
Query: 940 QDVICECKEGYRGTRCDGCLD-------NYFGNPQERGGSCEPCDCSNNTDLALPGNCDT 992
++IC + T + +F P+ R + L
Sbjct: 202 LEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTD 261
Query: 993 LTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCL 1052
L + L+ F+ + + C CN+ + D + C C
Sbjct: 262 LRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHA---TVCVYDNSKLTCECE 318
Query: 1053 PNVIGVSCDRCLKNH----WKIASGTG--------CEPCDCDPIGSVDVTECNEY----- 1095
N G C +C KN+ W S C P +V E
Sbjct: 319 HNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGT 378
Query: 1096 ---TGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQG 1152
+C C + + G C++ + C+ +GS C ++G G
Sbjct: 379 CHNNVRCLCPAAYTGILCEKLR---------------CEEAGS----CGSDSGQGAPPHG 419
Query: 1153 IGGVRC 1158
Sbjct: 420 THHHHH 425
Score = 62.9 bits (152), Expect = 4e-10
Identities = 33/192 (17%), Positives = 45/192 (23%), Gaps = 60/192 (31%)
Query: 818 CKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCD 877
C CN + + D C+C T G +C +C Y P
Sbjct: 294 RGRCKCNLHATVC-VYDNSKLTCECEHNTTGPDCGKCKKNYQGRP-WSPGSY------LP 345
Query: 878 SKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDP 937
G +C S C N C GT +
Sbjct: 346 IPKGAANACIPSISSIGTNVCDN------------ELLHCQNGGTCHNN----------- 382
Query: 938 RSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKC 997
V C C Y G CE C G+C + +G+
Sbjct: 383 ----VRCLCPAAYTGIL------------------CEKLRCEEA------GSCGSDSGQG 414
Query: 998 LQCRYDTEGDHC 1009
+ T H
Sbjct: 415 -APPHGTHHHHH 425
Score = 62.6 bits (151), Expect = 6e-10
Identities = 27/157 (17%), Positives = 43/157 (27%), Gaps = 22/157 (14%)
Query: 752 PEACKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTY 811
+ Y+I G C C+ + D C C+ N G C +C
Sbjct: 278 ELHLARYFYAISDIKVRG--RCKCNLHATVC-VYDNSKLTCECEHNTTGPDCGKCKKNYQ 334
Query: 812 GF-------------GPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGY 858
G C + N+CD C+ + C Y
Sbjct: 335 GRPWSPGSYLPIPKGAANACIPSISSIGT---NVCDNELLHCQNGGTCHNNVRCLCPAAY 391
Query: 859 WNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENC 895
C++ C A C S +G + + T +
Sbjct: 392 TG-ILCEKLRCE-EAGSCGSDSGQG-APPHGTHHHHH 425
Score = 60.2 bits (145), Expect = 3e-09
Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 24/125 (19%)
Query: 1076 CEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNP--------NVECFP 1127
C C+ +V V + C+C+ G C +C+ N+ G P +
Sbjct: 294 RGRCKCNLHATVCV--YDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAA 351
Query: 1128 CDCDP--SGSATSQCH------------QNNGTCVCHQGIGGVRCDTCARGYIGTAPDCS 1173
C P S T+ C NN C+C G+ C+ G+ S
Sbjct: 352 NACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDS 411
Query: 1174 PCGEC 1178
G
Sbjct: 412 GQGAP 416
Score = 48.7 bits (115), Expect = 1e-05
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 21/133 (15%)
Query: 431 HCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEG 490
+P VG D + + ++ C CN+ T + C C+ N G
Sbjct: 266 LLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHAT--VCVYDNSKLTCECEHNTTG 323
Query: 491 RDCNQCLPHFWG----------LSESEEYGCKPCDCDPGASYDNNCDVI---------SG 531
DC +C ++ G + + C P G + +N + +
Sbjct: 324 PDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNV 383
Query: 532 QCKCKPHASGRTC 544
+C C +G C
Sbjct: 384 RCLCPAAYTGILC 396
Score = 32.5 bits (73), Expect = 1.5
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 491 RDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQS 550
D +F+ +S+ + C C+ A+ D C+C+ + +G C +++
Sbjct: 276 VDELHLARYFYAISDIKV--RGRCKCNLHATVCV-YDNSKLTCECEHNTTGPDCGKCKKN 332
Query: 551 YYSPP 555
Y P
Sbjct: 333 YQGRP 337
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 229 bits (583), Expect = 7e-67
Identities = 78/350 (22%), Positives = 123/350 (35%), Gaps = 47/350 (13%)
Query: 25 TCQLPQPISSCERKSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLEDKKKCFTC 84
+ + E +C P L + K+ S FC S C
Sbjct: 7 SWVTTDEGPTWEFYACQPKVMRLKDYVKVKVEPSGITCGDPPERFC--SHENPYLCSNEC 64
Query: 85 NSSPRFDNNPAFSHKIHNIVYATVPRTKTISWWQSENGVE-----NVTIQLDMEAEFHFT 139
++S NP +H + T +WQS I L T
Sbjct: 65 DAS-----NPDLAHPPRLMFDKEEEGLAT--YWQSITWSRYPSPLEANITLSWNKTVELT 117
Query: 140 -HLIIYFKTFRPAAMLIERSHDFGKTWQVYRYFAADCAKSFPGIPRDGLR----KLTDVY 194
+++ F+ RP M++E+S D G+TWQ Y+++A DC ++F R V
Sbjct: 118 DDVVMTFEYGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRARDMSSSSAHRVL 177
Query: 195 CESRYSSNNPSSGGE-VILRVLPPSLHHS-----------NIDPYSSDVQNLIKMTNLRI 242
C YS S + V V + + ++ +T+LR+
Sbjct: 178 CTEEYSRWAGSKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRM 237
Query: 243 NFTKLHTLGDDLLDTRRQIQEKYYYAITQMIVRGSCSCYGHASRCLPISEADTKPDMVHG 302
+ G + +R+ KY+YAI+ + V G C C HA+ C
Sbjct: 238 RLLRPALGGTYV---QRENLYKYFYAISNIEVIGRCKCNLHANLCSMREG--------SL 286
Query: 303 RCECTHNTQGLNCEKCIDFYNDLPWK-----PAFGSQTNACKQCNCNNHS 347
+CEC HNT G +C KC + W+ P NAC ++H
Sbjct: 287 QCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSHHHH 336
Score = 76.1 bits (186), Expect = 1e-14
Identities = 23/165 (13%), Positives = 40/165 (24%), Gaps = 14/165 (8%)
Query: 768 HGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVG 827
++ T S++ V V R P + +
Sbjct: 169 SSSSAHRVLCTEEYSRWAGSKKEKHVRFE-VRDRFAIFAGPDLRNMDNLYTRLESAKGLK 227
Query: 828 ALDNICDVV---SGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTC- 883
+ D+ + N RC CN HA+LC + G+
Sbjct: 228 EFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSMREGSLQ 287
Query: 884 ISCRNSTDGENCERCINGYYGDPRLGIDI---------PCRPCPC 919
C ++T G +C +C + C
Sbjct: 288 CECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGS 332
Score = 51.1 bits (121), Expect = 2e-06
Identities = 17/144 (11%), Positives = 30/144 (20%), Gaps = 25/144 (17%)
Query: 850 ECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLG 909
+ Y + + + EN +
Sbjct: 209 DLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIE--- 265
Query: 910 IDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQER 969
C C +A+ C R + CEC+ G C C N+
Sbjct: 266 ---VIGRCKCNL-------HANLC--SMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRA 313
Query: 970 GG----------SCEPCDCSNNTD 983
G +C ++
Sbjct: 314 GSYLPLPHGSPNACAAAGSHHHHH 337
Score = 50.3 bits (119), Expect = 3e-06
Identities = 24/120 (20%), Positives = 34/120 (28%), Gaps = 21/120 (17%)
Query: 356 VYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDG 415
++ G +R Y Y S+ EV RC C+ +L
Sbjct: 225 GLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFY---AISNIEVIGRCKCNLHANL--- 278
Query: 416 ICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNF----------NETNPNGCEPCTCN 465
C S +C C+ N G C CK F +PN C +
Sbjct: 279 -CSMREG----SLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 49.2 bits (116), Expect = 7e-06
Identities = 25/165 (15%), Positives = 45/165 (27%), Gaps = 24/165 (14%)
Query: 367 VCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTD---D 423
+C G E+ ++ +D F+ P++ + G+ + +T
Sbjct: 177 LCTEEYSRWAGSKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLR 236
Query: 424 VLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTG--D 481
+ + V N C CN+ + C+ G
Sbjct: 237 MRLLRPALGGTYVQRENLYKYFYAISNIEV-----IGRCKCNLH----ANLCSMREGSLQ 287
Query: 482 CTCKRNVEGRDCNQCLPHFWG----------LSESEEYGCKPCDC 516
C C+ N G DC +C +F L C
Sbjct: 288 CECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGS 332
Score = 44.1 bits (103), Expect = 3e-04
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 18/82 (21%)
Query: 758 QHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGN--CVCKPNVVGRRCDRCAPGTYGF-- 813
Y + C C+ + C G+ C C+ N G C +C
Sbjct: 255 YKYFYAISNIEVIGRCKCNLHANL---CSMREGSLQCECEHNTTGPDCGKCKKNFRTRSW 311
Query: 814 -----------GPEGCKACDCN 824
P C A +
Sbjct: 312 RAGSYLPLPHGSPNACAAAGSH 333
Score = 41.1 bits (95), Expect = 0.002
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 19/88 (21%)
Query: 1058 VSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQ--CQCKSGFGGRQCDQCQT 1115
V + K + I++ C C+ + C+ G C+C+ G C +C+
Sbjct: 249 VQRENLYKYFYAISNIEVIGRCKCNLHAN----LCSMREGSLQCECEHNTTGPDCGKCKK 304
Query: 1116 NFWGNP-------------NVECFPCDC 1130
NF C
Sbjct: 305 NFRTRSWRAGSYLPLPHGSPNACAAAGS 332
Score = 40.3 bits (93), Expect = 0.004
Identities = 20/162 (12%), Positives = 32/162 (19%), Gaps = 19/162 (11%)
Query: 883 CISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDV 942
C + G E+ + D P + +
Sbjct: 178 CTEEYSRWAGSKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRM 237
Query: 943 ICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQ-CR 1001
L YF C C+ + + C G C
Sbjct: 238 RLLRPALGGTYVQRENLYKYFYAISNIE-VIGRCKCNLHAN-----LCSMREGSLQCECE 291
Query: 1002 YDTEGDHCQVCKAGFFGNALEQN------------CTECTCN 1031
++T G C CK F + C +
Sbjct: 292 HNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 32.2 bits (72), Expect = 1.7
Identities = 23/175 (13%), Positives = 47/175 (26%), Gaps = 14/175 (8%)
Query: 385 QYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKP-NVGGRRCDM 443
Q++ +D + F R S +C S K V R
Sbjct: 148 QFYAEDCMEAFGMSARRARDM--SSSSAHRVLCTEEYSRWAGSKKEKHVRFEVRDRFAIF 205
Query: 444 CKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGL 503
N + T+ V+ + +
Sbjct: 206 AGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMR-LLRPALGGTYVQRENLYKYFY----- 259
Query: 504 SESEEYGCKPCDCDPGASYDNNCDVISGQ--CKCKPHASGRTCSTPEQSYYSPPY 556
+ S C C+ A+ C + G C+C+ + +G C ++++ + +
Sbjct: 260 AISNIEVIGRCKCNLHANL---CSMREGSLQCECEHNTTGPDCGKCKKNFRTRSW 311
Score = 31.0 bits (69), Expect = 3.8
Identities = 10/83 (12%), Positives = 18/83 (21%), Gaps = 17/83 (20%)
Query: 1107 GRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGY- 1165
+ C C+ + S + C C G C C + +
Sbjct: 251 RENLYKYFYAISNIEV--IGRCKCNLHANLCSMRE-GSLQCECEHNTTGPDCGKCKKNFR 307
Query: 1166 -------------IGTAPDCSPC 1175
G+ C+
Sbjct: 308 TRSWRAGSYLPLPHGSPNACAAA 330
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 159 bits (403), Expect = 6e-45
Identities = 70/169 (41%), Positives = 92/169 (54%), Gaps = 16/169 (9%)
Query: 917 CPCPGTVESGLSYADTCQLDPRSQDVIC-ECKEGYRGTRCDGCLDNYFGNPQERGGS--- 972
CPCPG +C + P++++V+C C G G RC+ C D YFG+P G
Sbjct: 1 CPCPG--------GSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52
Query: 973 CEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNAL----EQNCTEC 1028
C PC C++N D GNC+ LTG+CL+C Y+T G +C CK GFFGN L C C
Sbjct: 53 CRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKAC 112
Query: 1029 TCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCE 1077
CN G + C+ TGQC CLP+V G C C ++ + SG GCE
Sbjct: 113 ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 142 bits (359), Expect = 5e-39
Identities = 53/185 (28%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 278 CSCYGHASRCLPISEADTKPDMVHGRC-ECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTN 336
C C G +S + P C C T G CE C D Y P
Sbjct: 1 CPCPGGSSCAIV-------PKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGS--NGPVR 51
Query: 337 ACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFS 396
C+ C CN++ G C C +NT G C+RCK+ F+ +P +
Sbjct: 52 LCRPCQCNDNIDPNAVG------NCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAP-N 104
Query: 397 DPEVCLRCDCDPGGSL-DDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETN 455
+ C C C+P G++ C+P T G+C C P+V GR C C G++N +
Sbjct: 105 PADKCKACACNPYGTVQQQSSCNPVT------GQCQCLPHVSGRDCGTCDPGYYNLQ--S 156
Query: 456 PNGCE 460
GCE
Sbjct: 157 GQGCE 161
Score = 140 bits (355), Expect = 2e-38
Identities = 52/180 (28%), Positives = 71/180 (39%), Gaps = 24/180 (13%)
Query: 341 CNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEV 400
C C S+ + VC C T G+ CE C ++ DP +
Sbjct: 1 CPCPGGSSCAIVPKT--------KEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52
Query: 401 CLRCDCDPGGSL-DDGICDPYTDDVLVSGKC-HCKPNVGGRRCDMCKDGFWNF--NETNP 456
C C C+ G C+ T G+C C N G CD CK+GF+
Sbjct: 53 CRPCQCNDNIDPNAVGNCNRLT------GECLKCIYNTAGFYCDRCKEGFFGNPLAPNPA 106
Query: 457 NGCEPCTCNIQGTINSQG-CNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCD 515
+ C+ C CN GT+ Q CN TG C C +V GRDC C P ++ L + C+
Sbjct: 107 DKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ-----SGQGCE 161
Score = 112 bits (282), Expect = 1e-28
Identities = 41/172 (23%), Positives = 63/172 (36%), Gaps = 26/172 (15%)
Query: 821 CDCNHVGALDNICDVVSGQC-KCRAQTYGRECDQCSPGYWNYPT--------CQRCICNG 871
C C + + C C T G+ C+ C GY+ P C+ C CN
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 872 HADL-----CDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDI-PCRPCPCPGTVES 925
+ D C+ TG C+ C +T G C+RC G++G+P C+ C C
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPY--- 117
Query: 926 GLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCD 977
+ +P + C+C G C C Y+ S + C+
Sbjct: 118 -GTVQQQSSCNPVTGQ--CQCLPHVSGRDCGTCDPGYYNLQ-----SGQGCE 161
Score = 103 bits (258), Expect = 2e-25
Identities = 43/167 (25%), Positives = 62/167 (37%), Gaps = 29/167 (17%)
Query: 773 CDCDPTGSTSKYCDQLGGNCV-CKPNVVGRRCDRCAPGTYGF------GPEGCKACDCNH 825
C C S + C C G+RC+ C G +G C+ C CN
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 826 VGALDNI--CDVVSGQC-KCRAQTYGRECDQCSPGYWNYPT-------CQRCICNGH--- 872
+ + C+ ++G+C KC T G CD+C G++ P C+ C CN +
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 873 --ADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPC 917
C+ TG C C G +C C GYY + C
Sbjct: 121 QQQSSCNPVTGQC-QCLPHVSGRDCGTCDPGYYNLQ------SGQGC 160
Score = 102 bits (256), Expect = 4e-25
Identities = 45/165 (27%), Positives = 60/165 (36%), Gaps = 22/165 (13%)
Query: 1028 CTCNILGIDHSKGPCDRTTGQ---CPCLPNVIGVSCDRCLKNHWKIASGTG-----CEPC 1079
C C S T + C G C+ C ++ G+ C PC
Sbjct: 1 CPCP----GGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPC 56
Query: 1080 DCDPIGSV-DVTECNEYTGQC-QCKSGFGGRQCDQCQTNFWGNPNVE-----CFPCDCDP 1132
C+ V CN TG+C +C G CD+C+ F+GNP C C C+P
Sbjct: 57 QCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNP 116
Query: 1133 SGSATSQ--CHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPC 1175
G+ Q C+ G C C + G C TC GY C
Sbjct: 117 YGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNL-QSGQGC 160
Score = 96.0 bits (239), Expect = 7e-23
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 772 ECDCDPTGSTSKYCDQLGGNCV-CKPNVVGRRCDRCAPGTYGF-----GPEGCKACDCNH 825
+C+ + + C++L G C+ C N G CDRC G +G + CKAC CN
Sbjct: 57 QCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNP 116
Query: 826 VGALDN--ICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRC 867
G + C+ V+GQC+C GR+C C PGY+N + Q C
Sbjct: 117 YGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 160
Score = 66.0 bits (161), Expect = 2e-12
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 1079 CDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNV------ECFPCDCDP 1132
C C S + + C +G G++C+ C ++G+P C PC C+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 1133 --SGSATSQCHQNNGTCV-CHQGIGGVRCDTCARGYIGTAPDCSPCGEC 1178
+A C++ G C+ C G CD C G+ G +P +C
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 109
Score = 61.0 bits (148), Expect = 1e-10
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 753 EACKKQHY--SIGMYVHHGANECDCDPTGSTSK--YCDQLGGNCVCKPNVVGRRCDRCAP 808
+ CK+ + + C C+P G+ + C+ + G C C P+V GR C C P
Sbjct: 90 DRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDP 149
Query: 809 GTYGF-GPEGCK 819
G Y +GC+
Sbjct: 150 GYYNLQSGQGCE 161
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 100 bits (249), Expect = 9e-25
Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 20/125 (16%)
Query: 399 EVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETN--- 455
E C+ G + C+ T +C C G R C GF
Sbjct: 1 EDPFGPGCEEAGCPEGSACNIIT------DRCTCS---GVRCRVHCPHGFQRSRYGCEFC 51
Query: 456 --PNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKP 513
TC+I C++ T C CK ++ C + P+ + GC+
Sbjct: 52 KCRLEPMKATCDISECPEGMMCSRLTNKCDCKIDIN---CRKTCPNGLKRD---KLGCEY 105
Query: 514 CDCDP 518
C+C P
Sbjct: 106 CECRP 110
Score = 82.4 bits (203), Expect = 1e-18
Identities = 21/120 (17%), Positives = 32/120 (26%), Gaps = 14/120 (11%)
Query: 1023 QNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASG-------TG 1075
++ C G C+ T +C C C + G
Sbjct: 1 EDPFGPGCEEAG-CPEGSACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLE 56
Query: 1076 CEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGS 1135
CD + C+ T +C CK C + N + C C+C P
Sbjct: 57 PMKATCDISECPEGMMCSRLTNKCDCKIDI---NCRKTCPNGLKRDKLGCEYCECRPKRK 113
Score = 77.4 bits (190), Expect = 8e-17
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 16/111 (14%)
Query: 1075 GCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPN--------VECF 1126
C+ G + + CN T +C C G R C F + +E
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDRCTCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEPM 58
Query: 1127 PCDCDPSGSAT-SQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAP-DCSPC 1175
CD S C + C C + C + C C
Sbjct: 59 KATCDISECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKRDKLGCEYC 106
Score = 77.4 bits (190), Expect = 8e-17
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 18/120 (15%)
Query: 769 GANECDCDPTGSTSK-YCDQLGGNCVCKPNVVGRRCDRCAPGTYGFG--------PEGCK 819
C+ G C+ + C C R C G
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLEPM 58
Query: 820 ACDCNHVGALDN-ICDVVSGQCKCRAQTYGRECDQCSPGYWNYPT--CQRCICNGHADLC 876
C+ + +C ++ +C C+ C + P C+ C C L
Sbjct: 59 KATCDISECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKRDKLGCEYCECRPKRKLI 115
Score = 72.0 bits (176), Expect = 6e-15
Identities = 26/122 (21%), Positives = 37/122 (30%), Gaps = 17/122 (13%)
Query: 973 CEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFG-------NALEQNC 1025
C C+ +T +C C C GF
Sbjct: 3 PFGPGCEEAGCPE-GSACNIITDRC-TCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEP 57
Query: 1026 TECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIG 1085
+ TC+I C R T +C C I ++C + N K GCE C+C P
Sbjct: 58 MKATCDISECPEGM-MCSRLTNKCDC---KIDINCRKTCPNGLK-RDKLGCEYCECRPKR 112
Query: 1086 SV 1087
+
Sbjct: 113 KL 114
Score = 66.6 bits (162), Expect = 4e-13
Identities = 19/94 (20%), Positives = 24/94 (25%), Gaps = 9/94 (9%)
Query: 458 GCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEY-----GCK 512
C G CN T CTC R C F E+
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDRCTCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEPM 58
Query: 513 PCDCDP-GASYDNNCDVISGQCKCKPHASGRTCS 545
CD C ++ +C CK + R
Sbjct: 59 KATCDISECPEGMMCSRLTNKCDCKIDINCRKTC 92
Score = 63.1 bits (153), Expect = 8e-12
Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 26/119 (21%)
Query: 816 EGCKACDCNHVGALDN-ICDVVSGQCKCRAQTYGRECDQCSPGYWNYPT----------C 864
E C G + C++++ +C C R C G+
Sbjct: 1 EDPFGPGCEEAGCPEGSACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLEP 57
Query: 865 QRCICN----GHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPC 919
+ C+ +C T C C+ NC + +LG C C C
Sbjct: 58 MKATCDISECPEGMMCSRLTNKCD-CKI---DINCRKTCPNGLKRDKLG----CEYCEC 108
Score = 57.4 bits (138), Expect = 8e-10
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 17/118 (14%)
Query: 358 NSTGRISGGVCDSCEHN---TEGRNCERCKQYFYKDP--NKEFSDPEVCLRCDCDPGGSL 412
G G C+ + R C F + + ++ CD
Sbjct: 9 EEAGCPEGSACNIITDRCTCSGVRCRVHCPHGFQRSRYGCEFCKCRLEPMKATCDISECP 68
Query: 413 DDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTI 470
+ +C T KC CK ++ C + GCE C C + +
Sbjct: 69 EGMMCSRLT------NKCDCKIDI---NCRKTCPNGLKR---DKLGCEYCECRPKRKL 114
Score = 52.7 bits (126), Expect = 3e-08
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 768 HGANECDCDPTGST-SKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCN 824
+ CD + C +L C CK ++ C + P GC+ C+C
Sbjct: 55 LEPMKATCDISECPEGMMCSRLTNKCDCKIDI---NCRKTCPNGLKRDKLGCEYCECR 109
Score = 43.1 bits (101), Expect = 7e-05
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 1125 CFPCDCDPSGSAT-SQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCG 1176
F C+ +G S C+ C C G C G+ + C C
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCS---GVRCRVHCPHGFQRSRYGCEFCK 52
Score = 42.3 bits (99), Expect = 1e-04
Identities = 16/122 (13%), Positives = 27/122 (22%), Gaps = 20/122 (16%)
Query: 291 SEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKC 350
+ +++ RC C+ C + + F + C+
Sbjct: 13 CPEGSACNIITDRCTCSGVRC---RVHCPHGFQRSRYGCEFCKCRLEPMKATCDISEC-- 67
Query: 351 HFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGG 410
C NC + K D C C+C P
Sbjct: 68 -----PEGMMCSRLTNKC----DCKIDINCRKTCPNGLKR------DKLGCEYCECRPKR 112
Query: 411 SL 412
L
Sbjct: 113 KL 114
Score = 36.2 bits (83), Expect = 0.020
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 14/93 (15%)
Query: 944 CECKEGYRGTRCDGCLDNYFGNPQ-----ERGGSCEPCDCSNNTDLALPGNCDTLTGKCL 998
C C C + + + C + ++ C LT KC
Sbjct: 26 CTCSGV---RCRVHCPHGFQRSRYGCEFCKCRLEPMKATC-DISECPEGMMCSRLTNKC- 80
Query: 999 QCRYDTEGDHCQVCKAGFFGNALEQNCTECTCN 1031
C+ +C+ C C C
Sbjct: 81 DCK---IDINCRKTCPNGLKRDK-LGCEYCECR 109
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 89.8 bits (222), Expect = 4e-18
Identities = 62/400 (15%), Positives = 87/400 (21%), Gaps = 91/400 (22%)
Query: 791 NCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDN--ICDVVSGQCKCRAQTYG 848
+ C V R R + G
Sbjct: 361 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 420
Query: 849 RECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRL 908
+C+ + R +C+G + G C C G+NCE G
Sbjct: 421 PQCE----CRCRDQSRDRSLCHGK---GFLECGIC-RCDTGYIGKNCECQTQGRSSQELE 472
Query: 909 GIDIP---CRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGN 965
G C G G C C + +G
Sbjct: 473 GSCRKDNNSIICSGLGDCVCG----------------QCLCHTSDVPGKL------IYGQ 510
Query: 966 PQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNA--LEQ 1023
E C+ N PG GKC C GF G+A E+
Sbjct: 511 YCECD--TINCERYNGQVCGGPGRGLCFCGKC-------------RCHPGFEGSACQCER 555
Query: 1024 NCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDP 1083
C +G C C C C C P C
Sbjct: 556 TTEGCLNPRRVECSGRGRCR--CNVCECHSGYQLPLCQECP-----------GCPSPCGK 602
Query: 1084 IGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQN 1143
S C E + + G G+ C C + C +
Sbjct: 603 YIS-----CAE---CLKFEKGPFGKNCSAA-----------CPGLQLSNNPVKGRTC-KE 642
Query: 1144 NGTCVCHQGIGGVRCD--TCARGYIGTAPDCSP----CGE 1177
+ C + D Y+ + +C CGE
Sbjct: 643 RDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPDGCGE 682
Score = 82.8 bits (204), Expect = 5e-16
Identities = 53/354 (14%), Positives = 85/354 (24%), Gaps = 52/354 (14%)
Query: 766 VHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCK---ACD 822
+ +CD + ++ + R C+
Sbjct: 371 RNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQ 430
Query: 823 CNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGT 882
+ G C+C G+ C+ + G + C + ++ +C S G
Sbjct: 431 SRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC-SGLGD 489
Query: 883 CIS----CRNSTDGENCERCINGYY--GDPRLGIDIPCRPCPCPGTVESGLSYADTCQLD 936
C+ C + + I G Y D + C PG GL + C+
Sbjct: 490 CVCGQCLCHT---SDVPGKLIYGQYCECDTINCERYNGQVCGGPGR---GLCFCGKCR-- 541
Query: 937 PRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEP-CDCSNNTDLALPG----NCD 991
C G+ G+ C C G R C C N G C
Sbjct: 542 ---------CHPGFEGSACQ-CERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQ 591
Query: 992 TLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPC 1051
G C C + G FG C + + C + C
Sbjct: 592 ECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKG--RTC-KERDSEGC 648
Query: 1052 LPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGF 1105
+ + D I + EC C F
Sbjct: 649 WVAY----------------TLEQQDGMDRYLIYVDESRECVAGPDGCGENLYF 686
Score = 74.7 bits (183), Expect = 2e-13
Identities = 54/295 (18%), Positives = 78/295 (26%), Gaps = 52/295 (17%)
Query: 885 SCRNSTDGENCERCI-NGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVI 943
C N N R +G + + + C + +
Sbjct: 363 FCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQ 422
Query: 944 CECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYD 1003
CEC+ + + C G + G C +C
Sbjct: 423 CECRCRDQS--------------------RDRSLCHGK------GFLEC--GIC-RCDTG 453
Query: 1004 TEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRC 1063
G +C+ G LE +C + I S G D GQC C + +
Sbjct: 454 YIGKNCECQTQGRSSQELEGSCRKDNN---SIICS-GLGDCVCGQCLCHTSDVPGKLIYG 509
Query: 1064 LKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNV 1123
+ C G + G+C+C GF G C QC+ G N
Sbjct: 510 QYCECDTINCERYNGQVCGGPG-----RGLCFCGKCRCHPGFEGSAC-QCERTTEGCLN- 562
Query: 1124 ECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGEC 1178
P + SG +C C CH G C C G C C
Sbjct: 563 ---PRRVECSGRGRCRC----NVCECHSGYQLPLCQECP----GCPSPCGKYISC 606
Score = 68.6 bits (167), Expect = 1e-11
Identities = 37/223 (16%), Positives = 53/223 (23%), Gaps = 26/223 (11%)
Query: 970 GGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECT 1029
+ DC + N + + + GF Q +C
Sbjct: 370 HRNQPRGDCDG-----VQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCE 424
Query: 1030 CNILGIDHSKGPC----DRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIG 1085
C + C G C C IG +C+ + S C D
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRS---SQELEGSCRKDNNS 481
Query: 1086 SVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQN-- 1143
+ + GQC C + + EC +C+
Sbjct: 482 IICSGLGDCVCGQCLCHTSDVPGKL-------IYGQYCECDTINCERYNGQVCGGPGRGL 534
Query: 1144 --NGTCVCHQGIGGVRCDTCARGYIGTAPDCSPC---GECFDN 1181
G C CH G G C P C G C N
Sbjct: 535 CFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN 577
Score = 61.7 bits (149), Expect = 2e-09
Identities = 40/238 (16%), Positives = 56/238 (23%), Gaps = 38/238 (15%)
Query: 763 GMYVHHGANECDCDPTGST-SKYCDQLGGNCVCKPNVVGRRC---DRCAPGTYGFGPEGC 818
G C D S D + G C+C + V + C T
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNG 524
Query: 819 KACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHA----- 873
+ C G+C+C G C QC +R C+G
Sbjct: 525 QVCGGP------GRGLCFCGKCRCHPGFEGSAC-QCERTTEGCLNPRRVECSGRGRCRCN 577
Query: 874 ----------DLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTV 923
LC G C C + G +G C +
Sbjct: 578 VCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKN-------CSAACPGLQL 630
Query: 924 ESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNN 981
+ TC + C Y + DG + R P C N
Sbjct: 631 SNNPVKGRTC-----KERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPDGCGEN 683
Score = 60.5 bits (146), Expect = 5e-09
Identities = 37/249 (14%), Positives = 59/249 (23%), Gaps = 41/249 (16%)
Query: 298 DMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVY 357
+ + + T I F C D ++
Sbjct: 385 VPITFQVKVTATECIQEQSFVIR-------ALGFTDIVTVQVLPQCECRCRDQSRDRSLC 437
Query: 358 NSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGIC 417
+ G + G+C C+ G+NCE Q + C D + G+
Sbjct: 438 HGKGFLECGIC-RCDTGYIGKNCECQTQGRSSQELEG--------SCRKDNNSIICSGLG 488
Query: 418 DPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNK 477
D V G+C C + + + + E + CE + G
Sbjct: 489 DC------VCGQCLCHTSDVPGKLI-----YGQYCECDTINCERYNGQVCG--GPGRGLC 535
Query: 478 DTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKP 537
G C C EG C E + C C+C
Sbjct: 536 FCGKCRCHPGFEGSACQC------------ERTTEGCLNPRRVECSGRGRCRCNVCECHS 583
Query: 538 HASGRTCST 546
C
Sbjct: 584 GYQLPLCQE 592
Score = 57.8 bits (139), Expect = 3e-08
Identities = 33/243 (13%), Positives = 59/243 (24%), Gaps = 22/243 (9%)
Query: 333 SQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPN 392
+ + C + + + D N V + +
Sbjct: 359 TYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFT------ 412
Query: 393 KEFSDPEVCLRCDCDPGGS-LDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNF 451
+ +V +C+C D +C L G C C G+ C+ G +
Sbjct: 413 -DIVTVQVLPQCECRCRDQSRDRSLCHGKGF--LECGICRCDTGYIGKNCECQTQGRSS- 468
Query: 452 NETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGC 511
C + I S + G C C + E Y
Sbjct: 469 ----QELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNG 524
Query: 512 KPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYDNFLYEAENANCKTD 571
+ C G+C+C P G C + + + C+ +
Sbjct: 525 QVCGGP------GRGLCFCGKCRCHPGFEGSACQCER-TTEGCLNPRRVECSGRGRCRCN 577
Query: 572 KCV 574
C
Sbjct: 578 VCE 580
Score = 52.4 bits (125), Expect = 1e-06
Identities = 54/325 (16%), Positives = 79/325 (24%), Gaps = 58/325 (17%)
Query: 239 NLRINFTKLHTLGDDLLDTRRQIQEKYYYAITQMIVRGSCSCYGHASRCLPISEADTKPD 298
N+ I F T + + + I+ + I + V C C S K
Sbjct: 384 NVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSR-DRSLCHGKGF 442
Query: 299 MVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYN 358
+ G C C G NCE + C +N+S C
Sbjct: 443 LECGICRCDTGYIGKNCECQTQGRSSQEL----------EGSCRKDNNSIICS------- 485
Query: 359 STGRISGGVC-----DSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLD 413
G G C D G+ CE D C R + G
Sbjct: 486 GLGDCVCGQCLCHTSDVPGKLIYGQYCE--------------CDTINCERYNGQVCGGPG 531
Query: 414 DGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEP--------CTCN 465
G+C GKC C P G C C+ C C C+
Sbjct: 532 RGLC--------FCGKCRCHPGFEGSACQ-CERTTEGCLNPRRVECSGRGRCRCNVCECH 582
Query: 466 IQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNN 525
G C + + +C + +G + S C
Sbjct: 583 -SGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAA--CPGLQLSNNPVKGRT 639
Query: 526 CDVISGQCKCKPHASGRTCSTPEQS 550
C C + ++
Sbjct: 640 CKE-RDSEGCWVAYTLEQQDGMDRY 663
Score = 41.6 bits (97), Expect = 0.003
Identities = 21/127 (16%), Positives = 31/127 (24%), Gaps = 17/127 (13%)
Query: 1072 SGTGCEPCDCDPIGSVDVTECN-EYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDC 1130
+ DCD + + T + + +C C C
Sbjct: 369 THRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQC-ECRC 427
Query: 1131 DPSGSATSQCHQN----NGTCVCHQGIGGVRCDTCARGYIG-----------TAPDCSPC 1175
S CH G C C G G C+ +G + CS
Sbjct: 428 RDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGL 487
Query: 1176 GECFDNW 1182
G+C
Sbjct: 488 GDCVCGQ 494
Score = 41.2 bits (96), Expect = 0.003
Identities = 17/151 (11%), Positives = 32/151 (21%), Gaps = 17/151 (11%)
Query: 418 DPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNK 477
+ D + V+ C V R N + +
Sbjct: 350 NALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRAL 409
Query: 478 DTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKP 537
D + + +C + C + G C+C
Sbjct: 410 GFTDIVTVQVLPQCEC-----------RCRDQSRDRSLCH------GKGFLECGICRCDT 452
Query: 538 HASGRTCSTPEQSYYSPPYDNFLYEAENANC 568
G+ C Q S + + N+
Sbjct: 453 GYIGKNCECQTQGRSSQELEGSCRKDNNSII 483
Score = 32.8 bits (74), Expect = 1.3
Identities = 11/88 (12%), Positives = 18/88 (20%), Gaps = 2/88 (2%)
Query: 1096 TGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSG--SATSQCHQNNGTCVCHQGI 1153
T C +G R + + F + S + G
Sbjct: 359 TYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQ 418
Query: 1154 GGVRCDTCARGYIGTAPDCSPCGECFDN 1181
+C+ R C G
Sbjct: 419 VLPQCECRCRDQSRDRSLCHGKGFLECG 446
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG
NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 85.9 bits (212), Expect = 2e-17
Identities = 50/296 (16%), Positives = 75/296 (25%), Gaps = 47/296 (15%)
Query: 769 GANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGA 828
+ P + Y + G + RC +G N+
Sbjct: 153 EVHLPHAQPQDAGV-YSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNN--- 208
Query: 829 LDNICDVVSGQCKCRAQTYGRECDQ-CSPGYWNYPTCQRCICNG---HADLCDSKTGTCI 884
+C +G+C C GR C++ C + +RC C C
Sbjct: 209 --GVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGC- 265
Query: 885 SCRNSTDGENCE-RCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVI 943
SC G C C G+YG C C + C
Sbjct: 266 SCATGWKGLQCNEACHPGFYGPD------CKLRCSCNNG--------EMCDRFQG----- 306
Query: 944 CECKEGYRGTRCD-GCLDNYFGNPQERGGSCEPCDCSNNTDLALPGN-CDTLTGKCLQCR 1001
C C G++G +C+ + + E N G T L
Sbjct: 307 CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKP 366
Query: 1002 YDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIG 1057
T V F + + T H P D +G C N +
Sbjct: 367 DGT------VLHPKDFNHTDHFSVAIFTI------HRILPPD--SGVWVCSVNTVA 408
Score = 84.0 bits (207), Expect = 1e-16
Identities = 48/292 (16%), Positives = 71/292 (24%), Gaps = 50/292 (17%)
Query: 803 CDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYP 862
P + D G + +C W
Sbjct: 144 PRHEVPDILEVHLPHAQPQDA------GVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPE 197
Query: 863 TCQRCICNGHADLCDSKTGTCISCRNSTDGENCER-CINGYYGDPRLGIDIPCRPCPCPG 921
C + +C TG CI C G CE+ C +G C
Sbjct: 198 CNHLCTACMNNGVCHEDTGECI-CPPGFMGRTCEKACELHTFGRT------CKERCSGQE 250
Query: 922 TVESGLSYADTCQLDPRSQDVICECKEGYRGTRCD-GCLDNYFGNPQERGGSCEPCDCSN 980
+S C DP C C G++G +C+ C ++G C C+N
Sbjct: 251 GCKSY----VFCLPDPYG----CSCATGWKGLQCNEACHPGFYGPDC-----KLRCSCNN 297
Query: 981 NTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKG 1040
CD G C C G+ G E+ I
Sbjct: 298 G------EMCDRFQG-------------CL-CSPGWQGLQCEREGIPRMTP--KIVDLPD 335
Query: 1041 PCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTEC 1092
+ +G+ + G + GT P D + V
Sbjct: 336 HIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIF 387
Score = 79.4 bits (195), Expect = 3e-15
Identities = 50/319 (15%), Positives = 83/319 (26%), Gaps = 55/319 (17%)
Query: 873 ADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIP-----CRPCPCPGTVESGL 927
D D+ + + + + + PR + P V S
Sbjct: 111 VDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSAR 170
Query: 928 SYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALP 987
++ ++ C+ G C+ C NN
Sbjct: 171 YIGGNLFTSAFTRLIVRRCEAQKWGPECN----------------HLCTACMNN------ 208
Query: 988 GNCDTLTGKCLQCRYDTEGDHCQ-VCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTT 1046
G C TG+C C G C+ C+ FG C+ + C
Sbjct: 209 GVCHEDTGEC-ICPPGFMGRTCEKACELHTFG---RTCKERCSGQEGCKSY--VFCLPDP 262
Query: 1047 GQCPCLPNVIGVSCDRCLKNHWKIASGTGCE-PCDCDPIGSVDVTECNEYTGQCQCKSGF 1105
C C G+ C+ + G C+ C C+ C+ + G C C G+
Sbjct: 263 YGCSCATGWKGLQCNEACHPGF---YGPDCKLRCSCNNGEM-----CDRFQG-CLCSPGW 313
Query: 1106 GGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGY 1165
G QC++ P D N+G G T
Sbjct: 314 QGLQCEREGIPR-------MTPKIVDLPD----HIEVNSGKFNPICKASGWPLPTNEEMT 362
Query: 1166 IGTAPDCSPCGECFDNWDS 1184
+ + F++ D
Sbjct: 363 LVKPDGTVLHPKDFNHTDH 381
Score = 77.4 bits (190), Expect = 1e-14
Identities = 40/240 (16%), Positives = 62/240 (25%), Gaps = 29/240 (12%)
Query: 738 CGDSYITVYRGVPIPEACKKQHYSIGMYVHHGAN-ECDCDPTGSTSKYCDQLGGNCVCKP 796
G G A + G C + C + G C+C P
Sbjct: 164 AGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNG-VCHEDTGECICPP 222
Query: 797 NVVGRRCDR-CAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQ-C 854
+GR C++ C T+G + C C C C G +C++ C
Sbjct: 223 GFMGRTCEKACELHTFGRTCKER--CSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEAC 280
Query: 855 SPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPC 914
PG++ RC CN + C C G CER
Sbjct: 281 HPGFYGPDCKLRCSCNNGE--MCDRFQGC-LCSPGWQGLQCEREGIPR-----------M 326
Query: 915 RPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCE 974
P D +++ + IC+ G+ +
Sbjct: 327 TPKIVDLP--------DHIEVNSGKFNPICKA-SGWPLPTNEEMTLVKPDGTVLHPKDFN 377
Score = 75.5 bits (185), Expect = 5e-14
Identities = 48/325 (14%), Positives = 74/325 (22%), Gaps = 62/325 (19%)
Query: 840 CKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCI 899
P + G ++ RC
Sbjct: 133 IYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNL--FTSAFTRLIVRRCE 190
Query: 900 NGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCD-GC 958
+G + C C G C D C C G+ G C+ C
Sbjct: 191 AQKWGP---ECNHLCTACMNNGV----------CHEDTGE----CICPPGFMGRTCEKAC 233
Query: 959 LDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQ-VCKAGFF 1017
+ FG + S + C + C C C +G C C GF+
Sbjct: 234 ELHTFGRTCKERCSGQEG-CKSY------VFCLPDPYGC-SCATGWKGLQCNEACHPGFY 285
Query: 1018 GNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCE 1077
G + C+ C CDR G C C P G+ C+R
Sbjct: 286 GPDCKLRCS-CNNG--------EMCDRFQG-CLCSPGWQGLQCEREGIP--------RMT 327
Query: 1078 PCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSAT 1137
P D + G + + N E D +
Sbjct: 328 PKIVD--------------LPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHP 373
Query: 1138 SQCHQNNG-TCVCHQGIGGVRCDTC 1161
+ + + + D+
Sbjct: 374 KDFNHTDHFSVAIFTIHRILPPDSG 398
Score = 75.1 bits (184), Expect = 7e-14
Identities = 38/248 (15%), Positives = 68/248 (27%), Gaps = 36/248 (14%)
Query: 313 LNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCE 372
++ +K + D + + + + +
Sbjct: 119 ISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFT 178
Query: 373 HNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHC 432
RC+ + C+ +++G+C +G+C C
Sbjct: 179 SAFTRLIVRRCEAQKW------------GPECNHLCTACMNNGVCHE------DTGECIC 220
Query: 433 KPNVGGRRCDM-CKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGR 491
P GR C+ C+ + E C+ + C D C+C +G
Sbjct: 221 PPGFMGRTCEKACELHTFG-----RTCKERCSGQEGCK-SYVFCLPDPYGCSCATGWKGL 274
Query: 492 DCNQ-CLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQS 550
CN+ C P F+G C C+ G D C C P G C
Sbjct: 275 QCNEACHPGFYG-----PDCKLRCSCNNGEMCDR-----FQGCLCSPGWQGLQCEREGIP 324
Query: 551 YYSPPYDN 558
+P +
Sbjct: 325 RMTPKIVD 332
Score = 65.1 bits (158), Expect = 1e-10
Identities = 45/258 (17%), Positives = 64/258 (24%), Gaps = 61/258 (23%)
Query: 300 VHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNS 359
G T L +C +G C ++ CH D
Sbjct: 171 YIGGNLFTSAFTRLIVRRCEAQK--------WG--PECNHLCTACMNNGVCHED------ 214
Query: 360 TGRISGGVCDSCEHNTEGRNCER-CKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICD 418
G C C GR CE+ C+ + + RC G C
Sbjct: 215 -----TGEC-ICPPGFMGRTCEKACELHTF--------GRTCKERCSGQEGCK-SYVFCL 259
Query: 419 PYTDDVLVSGKCHCKPNVGGRRCDM-CKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNK 477
P C C G +C+ C GF+ P+ C+CN C++
Sbjct: 260 P------DPYGCSCATGWKGLQCNEACHPGFY-----GPDCKLRCSCNNGEM-----CDR 303
Query: 478 DTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKP 537
G C C +G C + P D + N + CK
Sbjct: 304 FQG-CLCSPGWQGLQCEREGIP----------RMTPKIVDLPDHIEVNSGKFNPICKA-S 351
Query: 538 HASGRTCSTPEQSYYSPP 555
T
Sbjct: 352 GWPLPTNEEMTLVKPDGT 369
Score = 51.2 bits (122), Expect = 2e-06
Identities = 38/240 (15%), Positives = 60/240 (25%), Gaps = 59/240 (24%)
Query: 298 DMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVY 357
G C C G CEK + + FG ++C+ C
Sbjct: 212 HEDTGECICPPGFMGRTCEKACELHT-------FGR--TCKERCSGQEG---CKSYVFCL 259
Query: 358 NSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGIC 417
C SC +G C + F P+ LRC C+ G C
Sbjct: 260 PDPYG-----C-SCATGWKGLQCNE-------ACHPGFYGPDCKLRCSCNNGEM-----C 301
Query: 418 DPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNK 477
D C C P G +C+ P ++ I N
Sbjct: 302 DR-------FQGCLCSPGWQGLQCERE----------GIPRMTPKIVDLPDHIE---VNS 341
Query: 478 DTGDCTCKRN-VEGRDCNQ--------CLPHFWGLSESEEYGCKPCDCDPGASYDNNCDV 528
+ CK + + + H + ++ + D+ V
Sbjct: 342 GKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWV 401
Score = 44.7 bits (105), Expect = 3e-04
Identities = 21/126 (16%), Positives = 30/126 (23%), Gaps = 8/126 (6%)
Query: 422 DDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGD 481
D+V +S K P+ E + Q + G
Sbjct: 115 DNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGG 174
Query: 482 CTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASG 541
+C WG + C C +G+C C P G
Sbjct: 175 NLFTSAFTRLIVRRCEAQKWGPECN----HLCTACMNNGV----CHEDTGECICPPGFMG 226
Query: 542 RTCSTP 547
RTC
Sbjct: 227 RTCEKA 232
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.8 bits (201), Expect = 2e-15
Identities = 90/641 (14%), Positives = 191/641 (29%), Gaps = 144/641 (22%)
Query: 1215 EFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQRI 1274
+FE E + + L + + DM K I++ E+ + + + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILSKEE---IDHII-MSKDAV 61
Query: 1275 NLARLALNDLTEEIKKLNK--TGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQST 1332
+ L + +++ + E+L+ N L + + S+ +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-------PIKTEQRQPSMMTRMYIE 114
Query: 1333 ETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELIC 1392
+ ++ ND + F ++ + RL + L + L +L
Sbjct: 115 QRDRLYNDNQV------------FAKYN---------VSRL-QPYLKLRQALLEL----- 147
Query: 1393 DKRGDPCDN--LCGGAGCGK------------------CGGMWCSNGTLSESNSAKDYAE 1432
P N + G G GK W L NS + E
Sbjct: 148 ----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCNSPETVLE 200
Query: 1433 TSKKLINEKESKAEELRKHMI-ILSESNSAKDYAETSKKLINEKE-AKAEEVFRGITTAK 1490
+KL+ + + H I +S + ++L+ K V + AK
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQNAK 257
Query: 1491 QESHAANILAKEAYDHAASV----RNKTAAYVASTSNITKQLDEFLNAPGATLADIRNIS 1546
A++ + + R K S + T + ++ T +++++
Sbjct: 258 -------AW--NAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLL 307
Query: 1547 GLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGA 1606
++ Q P + N S+ + + + L N
Sbjct: 308 LKYLDCRPQDLPRE----VLTTNPRRLSI----------IAESIR-DGLATWDNWKHVNC 352
Query: 1607 DSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKD-DISAARKDLSQITNDLD--DAQQKSN 1663
D ++ ++VL A + +++ I LS I D+ D N
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTIL--LSLIWFDVIKSDVMVVVN 409
Query: 1664 ETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEK-NLEKEVALAQKQASGLRSRYQET- 1721
+ K L++++ K S + E K LE E AL + + Y
Sbjct: 410 KL-HKYSLVEKQPKEST-------ISIPSIYLELKVKLENEYALHRS----IVDHYNIPK 457
Query: 1722 --DNKLLSKAESSG---------LKRARGQMLLNKASQLSVN---TTAKLKQLNETEAMF 1767
D+ L LK + + ++ K++ +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 1768 NSQESELTEL-------SKNIAELQKRIQSCINFIVDKSNN 1801
S + L +L N + ++ + + ++F+ N
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Score = 54.1 bits (129), Expect = 4e-07
Identities = 66/469 (14%), Positives = 144/469 (30%), Gaps = 98/469 (20%)
Query: 1176 GECFDNWDSILRGLADQTTKVITDASNIKQTGASGAYTKEFELLEKKIEDVKALVENTTR 1235
C +++L L Q D + ++ S ++ ++ L+
Sbjct: 190 KNCNSP-ETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---LL----- 238
Query: 1236 SSHDLTVMLTTIDDMK-KQIMNNEDPNGVG-KTLGNTTQRINLARLALNDLTEEIKKLNK 1293
S L + +++ + N + + K L TT+ + L+ T L+
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFN---LSCKIL-LTTRFKQVTD-FLSAATTTHISLDH 293
Query: 1294 TGEMLKENATL-LQENNVE-GALELTRQAHDTS-LKLKEQSTETEKQINDAER------- 1343
L + L ++ +L R+ T+ +L S E +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHV 350
Query: 1344 QCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLC 1403
C + +T E E +++ ++++ + I P L
Sbjct: 351 NCDK----LTTIIESSLNVLEPAE--YRKMFDRLSVFPPSAH-----I------PTILLS 393
Query: 1404 GGAGCGKCGGMWCSNGTLSESNSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKD 1463
+W + +S+ + K + EK+ K + I L ++
Sbjct: 394 L---------IWFD---VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 1464 YAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSN 1523
+ +++ + + + + + + H ++ + +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---GH-HLKNIEH--PERMTLFRM 495
Query: 1524 ITKQLD-EFL-----------NAPGA---TLADIRNISGLAVNKNIQSNPEQIRERANEI 1568
+ LD FL NA G+ TL ++ I N + ER +
Sbjct: 496 VF--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-----PYICDN-DPKYERL--V 545
Query: 1569 NNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGA--DSTKNTVQK 1615
N ++ L I+ L + K DL R A + + A + VQ+
Sbjct: 546 NAILDFLPKIEENLICS-----KYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 41.8 bits (97), Expect = 0.002
Identities = 39/279 (13%), Positives = 74/279 (26%), Gaps = 102/279 (36%)
Query: 152 AMLIERSHDFGKTWQVYRYFAADCAKSFPGIPRDGLRKLTDVYCESRYSSNNPSSGGEVI 211
+++ E D TW +++ D + I L L +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEPAEYRKMFDR---------- 377
Query: 212 LRVLPPSLHHSNI----------DPYSSDVQNLIKMTNLRINFTKLHTLGDDLLDTRRQI 261
L V PPS ++I D SDV ++ KLH L++ ++
Sbjct: 378 LSVFPPS---AHIPTILLSLIWFDVIKSDVMVVVN---------KLHKYS--LVE-KQPK 422
Query: 262 QEKYYYAITQMIVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDF 321
+ + ++ + + + H +D
Sbjct: 423 ESTISIPSIYLELKVKL---------------ENEYAL--------HR-------SIVDH 452
Query: 322 YNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCE 381
YN + ++ + D+ Y+ G H + E
Sbjct: 453 YN--------------IPKTFDSDDLIPPYLDQYFYSHIGH----------HLKNIEHPE 488
Query: 382 RCKQY--FYKDPNKEFSDPEVCLRCD----CDPGGSLDD 414
R + + D F E +R D G L+
Sbjct: 489 RMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILNT 523
Score = 36.0 bits (82), Expect = 0.14
Identities = 78/493 (15%), Positives = 130/493 (26%), Gaps = 161/493 (32%)
Query: 74 FLEDKKKCFTCNSSPRFDNNPAFSHK-IHNIVYA--TVPRTKTISWW---QSENGVEN-V 126
F + F C S + I +I+ + V T + W + E V+ V
Sbjct: 25 FEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 127 TIQLDMEAEFHFTHL-----------IIYFKT----------FRP-------------AA 152
L + +F + + +Y + F A
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 153 MLIERSHD---------FGKTW---QVYRYFAADCAKSFPGI----------PRDGLRKL 190
+L R GKTW V + C F I P L L
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEML 202
Query: 191 TDVY--------CESRYSSNNPSSGGEVI--LRVLPPSLHHSN----IDPYSSDVQN--L 234
+ S +SSN + LR L S + N + +VQN
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----NVQNAKA 258
Query: 235 IKMTNL--RINFTKLHTLGDDLLDTR-----RQIQEKYYYAITQMIVRGS---------- 277
NL +I LL TR + I+ +
Sbjct: 259 WNAFNLSCKI-----------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 278 CSCYGHASRCLPISEADTKP-------DMVHGRCECTHNTQGLNCEK---CID-FYNDLP 326
+ LP T P + + N + +NC+K I+ N L
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL- 366
Query: 327 WKPAFGSQTNACKQCNCNNHSTKCHFDE-AVYNSTGRISGGV-----CDSCEHNTEGRNC 380
+PA + FD +V+ + I + D + +
Sbjct: 367 -EPA----------------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 381 ERCKQYFYKDPNKEFS----DPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNV 436
+ K + KE + + L+ + +L I D Y K ++
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN-----IPKTFDSDDL 464
Query: 437 GGRRCDMCKDGFW 449
D ++
Sbjct: 465 I----PPYLDQYF 473
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 75.1 bits (184), Expect = 1e-13
Identities = 65/381 (17%), Positives = 87/381 (22%), Gaps = 74/381 (19%)
Query: 772 ECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDN 831
E P + + N V + C G K C +
Sbjct: 358 EVRDLPEELSLSFNATCLNNEVIPG---LKSCMGLKIGDTVSFSIEAKVRGCPQEKE-KS 413
Query: 832 ICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTD 891
G +CD C+ P RC NG+ + G C C
Sbjct: 414 FTIKPVGFKDSLIVQVTFDCD-CACQAQAEPNSHRC-NNGN---GTFECGVC-RCGPGWL 467
Query: 892 GENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYR 951
G CE C Y + C P C C C
Sbjct: 468 GSQCE-CSEEDYRPSQQD---ECSPREGQ----------PVCSQRGECLCGQCVCHSSDF 513
Query: 952 GTRC-DGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQ 1010
G C + F + CS + G C G C
Sbjct: 514 GKITGKYCECDDFSCV-----RYKGEMCSGH------GQCSC--GDC------------- 547
Query: 1011 VCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKI 1070
+C + + G TC G G C C++
Sbjct: 548 LCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSC------------VCIQPGS-- 593
Query: 1071 ASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDC 1130
G CE C P C +CK G D+ N + +E
Sbjct: 594 -YGDTCEKCPTCPDA------CTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELK 646
Query: 1131 DPSGSATSQCH-QNNGTCVCH 1150
D G C +N CV
Sbjct: 647 DT-GKDAVNCTYKNEDDCVVR 666
Score = 73.6 bits (180), Expect = 4e-13
Identities = 51/301 (16%), Positives = 80/301 (26%), Gaps = 68/301 (22%)
Query: 771 NECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALD 830
P G Q+ +C C C+ +
Sbjct: 412 KSFTIKPVGFKDSLIVQVTFDCDC--------------ACQAQAEPNSHRCNNGN----- 452
Query: 831 NICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCIS----C 886
G C+C G +C+ CS + C +C S+ G C+ C
Sbjct: 453 --GTFECGVCRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVC-SQRGECLCGQCVC 508
Query: 887 RNSTDGENCER-CINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICE 945
+S G+ + C + R C G G C
Sbjct: 509 HSSDFGKITGKYCECDDFSCVRY----KGEMCSGHGQCSCG----------------DCL 548
Query: 946 CKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTE 1005
C + G C+ C G CS G C+ G C+ + +
Sbjct: 549 CDSDWTGYYCN-CTTRTDTCMSSNG-----LLCSGR------GKCE--CGSCVCIQPGSY 594
Query: 1006 GDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRT------TGQCPCLPNVIGVS 1059
GD C+ C ++ C EC G H + C+R + + V+
Sbjct: 595 GDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVN 654
Query: 1060 C 1060
C
Sbjct: 655 C 655
Score = 73.2 bits (179), Expect = 5e-13
Identities = 49/322 (15%), Positives = 82/322 (25%), Gaps = 66/322 (20%)
Query: 862 PTCQRCICNGHADLCDSK-TGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCP 920
P + C+ D C + G+ + + C C C
Sbjct: 381 PGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFT-IKPVGFKDSLIVQVTFDC-DCACQ 438
Query: 921 GTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSN 980
E + +C C G+ G++C+ C + + Q+ S
Sbjct: 439 AQAEPNSHRCNNGNGTFECG--VCRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVC 495
Query: 981 NTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNC----TECTCNILGID 1036
+ + L G+C VC + FG + C C +
Sbjct: 496 S------QRGECLCGQC-------------VCHSSDFGKITGKYCECDDFSCVRYKGEMC 536
Query: 1037 HSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYT 1096
G C G C C + G C+ D S + C+
Sbjct: 537 SGHGQCS--CGDCLCDSDWTGYYCN---------------CTTRTDTCMSSNGLLCS--- 576
Query: 1097 GQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGV 1156
G+ +C+ G C Q +G+ C+ + C C + G
Sbjct: 577 GRGKCECG----SCVCIQPGSYGD--------TCEKCPTCPDACTFKKECVECKKFDRGA 624
Query: 1157 RCDTCARGYIGTAPDCSPCGEC 1178
D C E
Sbjct: 625 LHDEN-----TCNRYCRDEIES 641
Score = 61.6 bits (149), Expect = 2e-09
Identities = 37/240 (15%), Positives = 67/240 (27%), Gaps = 42/240 (17%)
Query: 946 CKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTE 1005
C C+ G+ + C + T K + +
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQE-------KEKSFTIKPVGFKDSLI 426
Query: 1006 GDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLK 1065
C + C ++ G G C C P +G C+ C +
Sbjct: 427 VQVTFDC---------DCACQAQAEPNSHRCNN-GNGTFECGVCRCGPGWLGSQCE-CSE 475
Query: 1066 NHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQ-CQTNFWGNPNVE 1124
++ + C P + P+ S EC GQC C S G+ + C+ + + +
Sbjct: 476 EDYRPSQQDECSPREGQPVCS-QRGEC--LCGQCVCHSSDFGKITGKYCECDDFSCVRYK 532
Query: 1125 CFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDS 1184
C +G C C C C + G +C+ + + +
Sbjct: 533 GEMC-------------SGHGQCSCGD------C-LCDSDWTGYYCNCTTRTDTCMSSNG 572
Score = 60.9 bits (147), Expect = 3e-09
Identities = 39/216 (18%), Positives = 64/216 (29%), Gaps = 21/216 (9%)
Query: 363 ISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDP---EVCLRCDCDPGGSLDDGICDP 419
+ G S + R C + K+ + F D +V CDC +
Sbjct: 389 LKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRC 448
Query: 420 YTDDV-LVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKD 478
+ G C C P G +C+ C + + P+ + C+ + SQ
Sbjct: 449 NNGNGTFECGVCRCGPGWLGSQCE-CSEEDYR-----PSQQDECSPREGQPVCSQRGECL 502
Query: 479 TGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPH 538
G C C + G+ + E C G + G C C
Sbjct: 503 CGQCVCHSSDFGKITGKYC----------ECDDFSCVRYKGEMCSGHGQCSCGDCLCDSD 552
Query: 539 ASGRTCSTPEQSYYSPPYDNFLYEAENANCKTDKCV 574
+G C+ + N L + C+ CV
Sbjct: 553 WTGYYCNCTT-RTDTCMSSNGLLCSGRGKCECGSCV 587
Score = 60.5 bits (146), Expect = 4e-09
Identities = 43/261 (16%), Positives = 62/261 (23%), Gaps = 52/261 (19%)
Query: 302 GRCECTHNTQG--------LNCEKCIDFYNDLPWKPAFG----SQTNACKQCNCNNHSTK 349
G C G C G C+C +
Sbjct: 382 GLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQA 441
Query: 350 CHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPG 409
N G GVC C G CE ++E P C G
Sbjct: 442 EPNSHRCNNGNGTFECGVC-RCGPGWLGSQCEC---------SEEDYRPSQQDECSPREG 491
Query: 410 GSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGT 469
+ + + G+C C + G+ + ++ + + C+ G
Sbjct: 492 QPVCSQRGEC------LCGQCVCHSSDFGKITGK----YCECDDFSCVRYKGEMCSGHGQ 541
Query: 470 INSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVI 529
C GDC C + G CN C G
Sbjct: 542 -----C--SCGDCLCDSDWTGYYCNCTTR------------TDTCMSSNGLLCSGRGKCE 582
Query: 530 SGQCKC-KPHASGRTCSTPEQ 549
G C C +P + G TC
Sbjct: 583 CGSCVCIQPGSYGDTCEKCPT 603
Score = 53.9 bits (129), Expect = 4e-07
Identities = 40/281 (14%), Positives = 64/281 (22%), Gaps = 66/281 (23%)
Query: 277 SCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTN 336
C+C A + G C C G CE + Y +
Sbjct: 434 DCACQAQAEPNSHRCN-NGNGTFECGVCRCGPGWLGSQCECSEEDYR-----------PS 481
Query: 337 ACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFS 396
+C+ C G G C C + G+ + + +
Sbjct: 482 QQDECSPREGQPVCS-------QRGECLCGQC-VCHSSDFGKITGKYCEC-------DDF 526
Query: 397 DPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNP 456
C G C G C C + G C+ C +N
Sbjct: 527 SCVRYKGEMCSGHGQ-----C--------SCGDCLCDSDWTGYYCN-CTTRTDTCMSSNG 572
Query: 457 NGCEP--------CTCNIQGTI--NSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSES 506
C C C G+ + C CT ++C +C G
Sbjct: 573 LLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTF-----KKECVECKKFDRGAL-- 625
Query: 507 EEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTP 547
C+ ++ S + C+
Sbjct: 626 ----HDENTCNR----YCRDEIESVKELKDTGKDAVNCTYK 658
Score = 37.8 bits (87), Expect = 0.043
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 15/131 (11%)
Query: 421 TDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTG 480
+++ +S C N C + + C + +
Sbjct: 363 PEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFK 422
Query: 481 DCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHAS 540
D + DC + + + N G C+C P
Sbjct: 423 DSLIVQVTFDCDCA---------------CQAQAEPNSHRCNNGNGTFECGVCRCGPGWL 467
Query: 541 GRTCSTPEQSY 551
G C E+ Y
Sbjct: 468 GSQCECSEEDY 478
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 64.7 bits (157), Expect = 5e-11
Identities = 41/304 (13%), Positives = 101/304 (33%), Gaps = 37/304 (12%)
Query: 1423 ESNSAKDYAETSKKLINEKESKAEELRKHMIILSESNSA-KDYAETSKKLINEKEAKAEE 1481
+ +A D A+ ++ E ++++L ++ L + A +D + + + + + K E
Sbjct: 14 DKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLEL 73
Query: 1482 VFRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLAD 1541
+ T A+ + + N + + + + A + K DE
Sbjct: 74 AEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE----------- 122
Query: 1542 IRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANL 1601
+ + I RA + ++ + + K A
Sbjct: 123 ------------SERGMKVIESRAQKDEEKMEIQEI-------------QLKEAKHIAED 157
Query: 1602 TKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQK 1661
+ + I L A +++E +++I +L + + QK
Sbjct: 158 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQK 217
Query: 1662 SNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQET 1721
++ ++K+L ++LK + RS +E +LE E+ + + +
Sbjct: 218 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277
Query: 1722 DNKL 1725
N +
Sbjct: 278 LNDM 281
Score = 60.4 bits (146), Expect = 1e-09
Identities = 26/157 (16%), Positives = 57/157 (36%)
Query: 1634 IQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDV 1693
+Q K D A + D A+ +S + ++ LQ++LK+ + + + D
Sbjct: 8 MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA 67
Query: 1694 ENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNT 1753
+ + + EK+ A+ + L R Q + +L E + + A +
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 1754 TAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQS 1790
+ + E QE +L E + ++ +
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEE 164
Score = 52.0 bits (124), Expect = 7e-07
Identities = 19/147 (12%), Positives = 53/147 (36%)
Query: 1643 AARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEK 1702
A +K + + D ++A +++E K ++R K ++ + + E+E +
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62
Query: 1703 EVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNE 1762
+ AQ++ + + + + S L + + K +E
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122
Query: 1763 TEAMFNSQESELTELSKNIAELQKRIQ 1789
+E ES + + + + +++
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLK 149
Score = 46.2 bits (109), Expect = 6e-05
Identities = 50/340 (14%), Positives = 103/340 (30%), Gaps = 74/340 (21%)
Query: 1326 KLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLP 1385
+++ E E AE + ++ E L L +K+ + E L
Sbjct: 17 NALDRADEAEADKKAAEDRS------------------KQLEDELVSLQKKLKATEDELD 58
Query: 1386 DLNELICDKRGDPCDNLCGGAGCGKCGGMWCSNGTLSESNSAKDYAETSKKLINEKESKA 1445
+E + D + L + AE +N +
Sbjct: 59 KYSEALKDAQEK-----------------------LELAEKKATDAEADVASLNRRIQLF 95
Query: 1446 EELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYD 1505
EE E + A++ T+ + + E E A+E RG+ + A++ +
Sbjct: 96 EE---------ELDRAQERLATALQKLEEAEKAADESERGMKVIESR-------AQKDEE 139
Query: 1506 HAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERA 1565
+ + ++ +E I+S+ E+ ERA
Sbjct: 140 KMEIQEIQLKEAKHIAEDADRKYEEVARK----------------LVIIESDLERAEERA 183
Query: 1566 NEINNVIKSLTDIDTILTETAGDL-AKANDLKRKANLTKAGADSTKNTVQKIVDVLTEAR 1624
L + +T L A+A +K + + + +++ A
Sbjct: 184 ELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 243
Query: 1625 TAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNE 1664
+ E +I +D++ A + I+ +LD A
Sbjct: 244 RSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283
Score = 45.8 bits (108), Expect = 8e-05
Identities = 36/237 (15%), Positives = 82/237 (34%), Gaps = 38/237 (16%)
Query: 1247 IDDMKKQIMNNEDPNGVGKTLGNTTQRINLARLALNDLTEEIKKLNKTGEMLKENATLLQ 1306
+D +KK++ + N R + A + K+L L++ +
Sbjct: 1 MDAIKKKMQMLK------LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATE 54
Query: 1307 ENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEEN 1366
+ + + +E+ EK+ DAE + + + QE
Sbjct: 55 DEL--------DKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERL 106
Query: 1367 EKALQRLNEKITSLEKNLPDLNELICDKRGDPCDNLCGGAGCGKCGGMWCSNGTLSESNS 1426
ALQ+L E + +++ + + + D +
Sbjct: 107 ATALQKLEEAEKAADESERGMKVIESRAQKD-----------------------EEKMEI 143
Query: 1427 AKDYAETSKKLINEKESKAEELRKHMIIL-SESNSAKDYAETSKKLINEKEAKAEEV 1482
+ + +K + + + K EE+ + ++I+ S+ A++ AE S+ E E + + V
Sbjct: 144 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTV 200
Score = 44.6 bits (105), Expect = 2e-04
Identities = 23/177 (12%), Positives = 60/177 (33%), Gaps = 31/177 (17%)
Query: 1214 KEFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQR 1273
++ E+ E ++++ K + E+ R ++ + ++ + E + + +
Sbjct: 139 EKMEIQEIQLKEAKHIAEDADRKYEEVA---RKLVIIESDLERAE------ERAELSEGK 189
Query: 1274 INLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTE 1333
+ +T +K L E + +E+ E ++ L ++ E
Sbjct: 190 CAELEEEIKTVTNNLKSLEAQAEKYSQ-----KEDKYEEEIK----------VLSDKLKE 234
Query: 1334 TEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNEL 1390
E + AER + E + ++E + L+ L D+ +
Sbjct: 235 AETRAEFAERSVTKLEKSIDDL-------EDELYAQKLKYKAISEELDHALNDMTSI 284
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 57.3 bits (138), Expect = 3e-08
Identities = 58/362 (16%), Positives = 92/362 (25%), Gaps = 52/362 (14%)
Query: 850 ECDQCSPGY-WNYPTCQRCI--CNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDP 906
C C G+ N C+ + C D+C S T C N+ G +C C Y G+
Sbjct: 26 SCGFCPVGFLGNGTHCED-LDECALVPDICFS-TSKVPRCVNTQPGFHCLPCPPRYRGNQ 83
Query: 907 RLGIDIPCRPC---------PCPGTVESGLSYADTCQLDPRSQ-DVICECKEGYRGTRCD 956
+G+ + PC + +A+ L S CEC+ GY G
Sbjct: 84 PVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLI 143
Query: 957 GCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGF 1016
D+ + N C T +
Sbjct: 144 CGEDS------------DLDGWPNLNL-----VCATNATYHCIKDNCPHLPNSGQEDFDK 186
Query: 1017 FGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRC--LKNHWKIASGT 1074
G + + + + Q + +G CD C + N +I +
Sbjct: 187 DGIGDACDDDDDNDGVTDEKDNC-QLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDN 245
Query: 1075 GCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQ-------TNFWGNPNVECFP 1127
E C D+ + + + C + Q D N N +
Sbjct: 246 NGEGDACSV----DIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTD 301
Query: 1128 CDCDPSGSATSQCHQN------NGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDN 1181
D D G N C + D G D+
Sbjct: 302 VDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDD 361
Query: 1182 WD 1183
D
Sbjct: 362 RD 363
Score = 57.3 bits (138), Expect = 4e-08
Identities = 46/263 (17%), Positives = 68/263 (25%), Gaps = 22/263 (8%)
Query: 931 DTCQLDPRSQDVIC-ECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCD-CSNNTDLALPG 988
D C +P C +G C C + GN G CE D C+ D+
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSW--SCGFCPVGFLGN----GTHCEDLDECALVPDICFST 57
Query: 989 NCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQ 1048
+ +C G HC C + GN E + + PC T
Sbjct: 58 SKVP------RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHN 111
Query: 1049 CPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPI----GSVDVTECNEYTGQCQCKSG 1104
C I + + +G + C G ++ C
Sbjct: 112 CHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKD 171
Query: 1105 FGGRQCDQCQTNF----WGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDT 1160
+ Q +F G+ + D Q N + G RCD
Sbjct: 172 NCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDN 231
Query: 1161 CARGYIGTAPDCSPCGECFDNWD 1183
C + D GE
Sbjct: 232 CPYVHNPAQIDTDNNGEGDACSV 254
Score = 49.2 bits (117), Expect = 1e-05
Identities = 44/279 (15%), Positives = 64/279 (22%), Gaps = 31/279 (11%)
Query: 771 NECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALD 830
+EC P C C G C C P G P G +
Sbjct: 45 DECALVPDI-----CFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVC 99
Query: 831 ---NICDVVSGQCKCRAQ-------TYGRECDQCSPGY--WNYPTCQRCICNGHADLCDS 878
N C + C A+ + +C GY + +G +L
Sbjct: 100 EPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLV 159
Query: 879 -KTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDP 937
T C + D GI C V +
Sbjct: 160 CATNATYHCIKDNCPHLPNSGQEDFDKD---GIGDACDDDDDNDGVTD-----EKDNCQL 211
Query: 938 RSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNC-----DT 992
+ + G RCD C + + + E CS + D N
Sbjct: 212 LFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYV 271
Query: 993 LTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCN 1031
D GDHC C + + +
Sbjct: 272 YNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQ 310
Score = 38.8 bits (90), Expect = 0.020
Identities = 15/128 (11%), Positives = 28/128 (21%)
Query: 366 GVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVL 425
G + K PN D + D +DG+ D + L
Sbjct: 152 GWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQL 211
Query: 426 VSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCK 485
+ + + + I+ + +C
Sbjct: 212 LFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYV 271
Query: 486 RNVEGRDC 493
N + RD
Sbjct: 272 YNTDQRDT 279
Score = 36.9 bits (85), Expect = 0.064
Identities = 30/233 (12%), Positives = 58/233 (24%), Gaps = 24/233 (10%)
Query: 769 GANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGA 828
+ C + C C+ G G G + D +
Sbjct: 108 KTHNCHKHAECIYLGHFSDPMYKCECQ------------TGYAGDGLICGEDSDLDGWPN 155
Query: 829 LDNICD------VVSGQCKCRAQTYGRECDQCSPGYWNYP-TCQRCICNGHADLCDSKTG 881
L+ +C + C + + D+ G + + +
Sbjct: 156 LNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNP 215
Query: 882 TCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVE--SGLSYADTCQLDPRS 939
G+ C+ C + D C ++ + D C +
Sbjct: 216 RQADYDKDEVGDRCDNCPYVHNPAQI-DTDNNGEGDACSVDIDGDDVFNERDNCPYVY-N 273
Query: 940 QDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDT 992
D +G G CD C + + + C NN D+ G+ +
Sbjct: 274 TDQRDTDGDGV-GDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNN 325
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 55.6 bits (134), Expect = 6e-08
Identities = 53/297 (17%), Positives = 76/297 (25%), Gaps = 92/297 (30%)
Query: 864 CQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTV 923
C G D + I + + N + P C
Sbjct: 104 QVGFPCLGKQDGVAAFEVDVIVMNSEGNTILK-TPQNAIFFK---TCQQAECPGGC---- 155
Query: 924 ESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTD 983
C + ICEC +G+ G C+ C N
Sbjct: 156 ----RNGGFCN-----ERRICECPDGFHGPHCEKA--------------LCTPRCMNG-- 190
Query: 984 LALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCD 1043
G C G C +C GF+G ++ TC + G C
Sbjct: 191 ----GLC-VTPGFC-------------ICPPGFYGVNCDKANCSTTC------FNGGTC- 225
Query: 1044 RTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKS 1103
G+C C P + G C+ P C G C +C+C
Sbjct: 226 FYPGKCICPPGLEGEQCEIS------------KCPQPCRNGGK-----CIG-KSKCKCSK 267
Query: 1104 GFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDT 1160
G+ G C + C+ T CH C C +G G C+
Sbjct: 268 GYQGDLCSK-------------PVCEPGCGAHGT--CH-EPNKCQCQEGWHGRHCNK 308
Score = 52.2 bits (125), Expect = 7e-07
Identities = 53/270 (19%), Positives = 73/270 (27%), Gaps = 81/270 (30%)
Query: 913 PCRPCPCPGTVESGLSYA-DTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGG 971
PC G + ++ D ++ ++ + C
Sbjct: 103 VQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQA------------- 149
Query: 972 SCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCN 1031
P C N G C E C+ C GF G E+ C
Sbjct: 150 -ECPGGCRNG------GFC-------------NERRICE-CPDGFHGPHCEKALCTPRC- 187
Query: 1032 ILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTE 1091
+ G C T G C C P GV+CD+ C G+
Sbjct: 188 -----MNGGLC-VTPGFCICPPGFYGVNCDKA------------NCSTTCFNGGT----- 224
Query: 1092 CNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQ 1151
C G+C C G G QC+ +C P C G +C C C +
Sbjct: 225 CFY-PGKCICPPGLEGEQCEIS----------KC-PQPCRNGG----KCI-GKSKCKCSK 267
Query: 1152 GIGGVRCDTCARGYIGTAPDCSPCGECFDN 1181
G G C P C G C +
Sbjct: 268 GYQGDLCSKPV-----CEPGCGAHGTCHEP 292
Score = 52.2 bits (125), Expect = 8e-07
Identities = 55/325 (16%), Positives = 76/325 (23%), Gaps = 112/325 (34%)
Query: 790 GNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGR 849
G K +VV C G N G + + + +
Sbjct: 94 GTVPHKASVVQVGFP-CLGKQDGVAAFEVDVIVMNSEGN--------TILKTPQNAIFFK 144
Query: 850 ECDQ--CSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPR 907
C Q C G C G C + C C +G++G
Sbjct: 145 TCQQAECPGG-----------CRNG--------GFCN------ERRIC-ECPDGFHGP-- 176
Query: 908 LGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQ 967
+ C G C C C G+ G CD
Sbjct: 177 -HCEKALCTPRCMN---GG-----LC-----VTPGFCICPPGFYGVNCDKA--------- 213
Query: 968 ERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTE 1027
C N G C C C G G E +
Sbjct: 214 -----NCSTTCFNG-------------GTC------FYPGKCI-CPPGLEGEQCEISKCP 248
Query: 1028 CTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSV 1087
C + G C +C C G C C G+
Sbjct: 249 QPC------RNGGKCIGK-SKCKCSKGYQGDLCS------------KPVCEPGCGAHGT- 288
Query: 1088 DVTECNEYTGQCQCKSGFGGRQCDQ 1112
C+E +CQC+ G+ GR C++
Sbjct: 289 ----CHE-PNKCQCQEGWHGRHCNK 308
Score = 51.0 bits (122), Expect = 2e-06
Identities = 37/220 (16%), Positives = 52/220 (23%), Gaps = 60/220 (27%)
Query: 966 PQERGGSCEPCDCSNNTDLALPGNCDTLT----GKCLQCRYDTEGDHCQVCKAGFFGNAL 1021
P + C D D + G + + F
Sbjct: 97 PHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILK----------TPQNAIFFKTC 146
Query: 1022 EQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDC 1081
+Q C + G C+ C C G C++ C
Sbjct: 147 QQAECPGGC------RNGGFCNER-RICECPDGFHGPHCEKA------------LCTPRC 187
Query: 1082 DPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCH 1141
G C G C C GF G CD+ C T C
Sbjct: 188 MNGGL-----CVT-PGFCICPPGFYGVNCDKAN-------------CSTTCFNGGT--CF 226
Query: 1142 QNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDN 1181
G C+C G+ G +C+ C G+C
Sbjct: 227 -YPGKCICPPGLEGEQCEISK-----CPQPCRNGGKCIGK 260
Score = 37.9 bits (88), Expect = 0.028
Identities = 28/187 (14%), Positives = 40/187 (21%), Gaps = 48/187 (25%)
Query: 364 SGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDD 423
G + K P C + +C G + G C+
Sbjct: 110 LGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKT-CQQAECPGGCR-NGGFCNE---- 163
Query: 424 VLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCT 483
C C G C+ C G C G C
Sbjct: 164 ---RRICECPDGFHGPHCEKA--------------LCTPRCMNGGL-----CV-TPGFCI 200
Query: 484 CKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRT 543
C G +C++ C G + G+C C P G
Sbjct: 201 CPPGFYGVNCDKA--------------NCSTTCFNGGTCFY-----PGKCICPPGLEGEQ 241
Query: 544 CSTPEQS 550
C +
Sbjct: 242 CEISKCP 248
Score = 34.1 bits (78), Expect = 0.44
Identities = 31/158 (19%), Positives = 43/158 (27%), Gaps = 22/158 (13%)
Query: 404 CDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCT 463
+ SLD GI T +V + G K +V C + +
Sbjct: 70 YEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFP-C---LGKQDGVAAFEVDVIV 125
Query: 464 CNIQGTINSQGCNKDTGDCTCKRNVEGRDCN-----------QCLPHFWGLSESEEYGCK 512
N +G + TC++ C +C F G C+
Sbjct: 126 MNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPH------CE 179
Query: 513 PCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQS 550
C P C V G C C P G C S
Sbjct: 180 KALCTPRCMNGGLC-VTPGFCICPPGFYGVNCDKANCS 216
Score = 31.7 bits (72), Expect = 2.1
Identities = 52/296 (17%), Positives = 71/296 (23%), Gaps = 93/296 (31%)
Query: 262 QEKYYYAITQMIVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEK---- 317
Q +Y+Y + + K +V C G+ +
Sbjct: 65 QAEYFYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVI 124
Query: 318 -CIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDS-----C 371
N + P C+Q C C +GG C+ C
Sbjct: 125 VMNSEGNTILKTPQNAIFFKTCQQAECPGG---CR------------NGGFCNERRICEC 169
Query: 372 EHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCH 431
G +CE+ ++ G+C + G C
Sbjct: 170 PDGFHGPHCEKA----------------------LCTPRCMNGGLC-------VTPGFCI 200
Query: 432 CKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGR 491
C P G CD TC GT C G C C +EG
Sbjct: 201 CPPGFYGVNCDKA--------------NCSTTCFNGGT-----CF-YPGKCICPPGLEGE 240
Query: 492 DCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTP 547
C E C P C G +CKC G CS P
Sbjct: 241 QC-------------EISKC-PQPCRNGGKCIGK-----SKCKCSKGYQGDLCSKP 277
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 55.2 bits (133), Expect = 2e-07
Identities = 43/238 (18%), Positives = 94/238 (39%), Gaps = 25/238 (10%)
Query: 1559 EQIRERANEINNVIKSLTDIDTILTETAGDLAK----ANDLKRKANLTKAGADSTKNTVQ 1614
++ +ER + +K L T L E L + +L +A + + K ++
Sbjct: 867 QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926
Query: 1615 KIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQE 1674
+ +L E + E Q + + ++ + + L++ + + ++
Sbjct: 927 E---ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Query: 1675 RLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKL--LSKAESS 1732
++K ++ + +E++ L KE L +++ S L + E + K L+K ++
Sbjct: 984 KIKKMED-------DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Query: 1733 GLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQS 1790
+ S+L V + K E E + E E ++L + IAELQ +I
Sbjct: 1037 ---------HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Score = 54.5 bits (131), Expect = 4e-07
Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 4/178 (2%)
Query: 1615 KIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQE 1674
K+ + + + E A Q + + A + ++ +D+ + ++N+ + KLL+E
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Query: 1675 RLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGL 1734
R+ + + A ++ + E ++ + + QE + K+ K E
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE-KIKRKLEGE-S 1069
Query: 1735 KRARGQM--LLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQS 1790
Q+ L + ++L K ++L A + S+ K I EL+ I
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Score = 49.8 bits (119), Expect = 9e-06
Identities = 43/290 (14%), Positives = 97/290 (33%), Gaps = 18/290 (6%)
Query: 1422 SESNSAKDYAETSKKLINEK---ESKAEELRKHMIILSESNSAKDYAETSKKL---INEK 1475
+E+ + E +L +K E E+ + E + KK+ + +
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL--QAEKKKMQQQMLDL 960
Query: 1476 EAKAEEVFRGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAP 1535
E + EE + E A+ K+ D + ++ + +++ +
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 1536 GATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDL 1595
+N+ K + I E + KS +++ I + G+ +DL
Sbjct: 1021 AEEEEKAKNL-----TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES---SDL 1072
Query: 1596 KRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDL 1655
+ +A K + K + L A + A I +S + DL
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Query: 1656 DDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENE-EKNLEKEV 1704
+ + N+ + + L E L++++ L++ + E + K+
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTE-LEDTLDTTATQQELRGSDYKDD 1181
Score = 43.7 bits (103), Expect = 6e-04
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 32/175 (18%)
Query: 1213 TKEFELLEKKIEDVKALVENTTRSSHDL-----------TVMLTTIDDMKKQIMNNEDPN 1261
TK E I +++ ++ +S +L + + I +++ QI +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA-- 1088
Query: 1262 GVGKTLGNTTQRINLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAH 1321
L + + A L D T + K L+ + + LQE+ LE + A
Sbjct: 1089 ----QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED-----LESEKAAR 1139
Query: 1322 DTSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEK 1376
+ + EKQ D + + + + T QE + ++K
Sbjct: 1140 N----------KAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 41.7 bits (98), Expect = 0.003
Identities = 27/199 (13%), Positives = 77/199 (38%), Gaps = 21/199 (10%)
Query: 1613 VQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDL-------DDAQQKSNET 1665
+Q + L + Q AE ++ + + ++ + + L +A++
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918
Query: 1666 NVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEV--------------ALAQKQA 1711
K + L+E L ++A + + ++ E+K +++++ Q +
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
Query: 1712 SGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQE 1771
+ ++ ++ +L + + ++L + S L+ N + ++ + N E
Sbjct: 979 VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHE 1038
Query: 1772 SELTELSKNIAELQKRIQS 1790
S ++EL + + +K Q
Sbjct: 1039 SMISELEVRLKKEEKSRQE 1057
Score = 41.4 bits (97), Expect = 0.003
Identities = 44/305 (14%), Positives = 89/305 (29%), Gaps = 62/305 (20%)
Query: 1211 AYTKEFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNT 1270
++ L ++ ++ ++ T + M + K+++ + L
Sbjct: 882 ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL---------EEILHEM 932
Query: 1271 TQRINLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQ 1330
RI L E KK+ + L+E L+E E RQ KL+ +
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQ---LEE------EEAARQ------KLQLE 977
Query: 1331 STETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKA---LQRLNEKITSLEKNLPDL 1387
+ +I E E+ K + +E L EK +L K
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 1388 NELICDKRGDPCDNLCGGAGCGKCGGMWCSNGTLSESNSAKDYAETSKKLINEKESKAEE 1447
+I + + + +K E E +
Sbjct: 1038 ESMI---------------------------------SELEVRLKKEEKSRQELEKIKRK 1064
Query: 1448 LRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHA 1507
L L E + + +L + K EE+ + + E+ N K+ +
Sbjct: 1065 LEGESSDLHEQIA--ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122
Query: 1508 ASVRN 1512
+ + +
Sbjct: 1123 SHISD 1127
Score = 40.2 bits (94), Expect = 0.008
Identities = 25/164 (15%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 1630 AEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRS 1689
E +Q +++ ++ + +L + +QK + + LLQE+L++ + +
Sbjct: 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914
Query: 1690 AMDVENEEKNLEKEVALAQKQASGLRSRYQ--ETDNKLLSKAESSGLKRARGQM--LLNK 1745
+ + +++ LE+ + + + R Q + + K + + + L+ + K
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM-QQQMLDLEEQLEEEEAARQK 973
Query: 1746 ASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQ 1789
V K+K++ + E + +L+K L++R+
Sbjct: 974 LQLEKVTADGKIKKMEDDIL---IMEDQNNKLTKERKLLEERVS 1014
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 54.8 bits (131), Expect = 3e-07
Identities = 61/451 (13%), Positives = 95/451 (21%), Gaps = 91/451 (20%)
Query: 805 RCAPGTY-GFGPEGCKACDCNHVGALDN-----------ICDVVSGQCKCRAQTYGRECD 852
+C G + + C + L++ D V C G
Sbjct: 654 QCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSI 713
Query: 853 QCSPGYWN-YPTCQRCIC-------NGHADLCDSKTGTCISCR-------NSTDGENCER 897
C G W P C N K +G
Sbjct: 714 TCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTV 773
Query: 898 CINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYR--GTRC 955
CING + + CP P + + + T + V C+E Y
Sbjct: 774 CINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEK-VSVLCQENYLIQEGEE 832
Query: 956 DGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQV-CKA 1014
C D + + E CS + + + Q Y G C+
Sbjct: 833 ITCKDGRWQSIPL---CVEKIPCSQPPQ---IEHGTINSSRSSQESY-AHGTKLSYTCEG 885
Query: 1015 GFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPN--------------VIGVSC 1060
GF E TC + P + + + C
Sbjct: 886 GFRI----SEENETTCYMGKWSSPPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKC 941
Query: 1061 D-----------RCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTG---------QCQ 1100
+CL W C DC + S +
Sbjct: 942 FEGFGIDGPAIAKCLGEKWSHP--PSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYT 999
Query: 1101 CKSGFG--GRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRC 1158
C + + G C + W +P + + +C
Sbjct: 1000 CATYYKMDGASNVTCINSRWTGRPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQC 1059
Query: 1159 D-----------TCARGYIGTAPDCSPCGEC 1178
C G P C
Sbjct: 1060 RSPYEMFGDEEVMCLNGNWTEPPQCKDSTGK 1090
Score = 49.4 bits (117), Expect = 1e-05
Identities = 58/441 (13%), Positives = 108/441 (24%), Gaps = 68/441 (15%)
Query: 801 RRCDRCAPGTYGFGPEGCKACDC--------NHVGALDNICDVVSGQCKCRAQTYG---R 849
RC + P K+CD + + D + +C ++
Sbjct: 471 SGSIRCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTT 530
Query: 850 ECDQCSPGYWNY-PTCQRCIC-------NGHADLCDSKTGT----CISCRN--STDGENC 895
C W+ P C C + D + SC+ + G N
Sbjct: 531 GSIVCGYNGWSDLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNS 590
Query: 896 ERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYR--GT 953
+C + + C P + +G T + S+ V C + G
Sbjct: 591 VQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGP 650
Query: 954 RCDGCLDN-YFGNPQERGGSCEPCDCSNNTDLALPGNC------DTLTGKCLQCRYDTEG 1006
C+D + P D + D++ C + + G
Sbjct: 651 NKIQCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSES-FTMIG 709
Query: 1007 DHCQVCKAGFFGNA---LEQNCTECTCNILGIDHSKGPCDRTTGQCPC-----LPNVIGV 1058
C G + + + + + I + ++ G
Sbjct: 710 HRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGW 769
Query: 1059 SCDRCLKNHWK-IASGTGCEPCDCDPIGSVDVTECNEYTG--------QCQCKSGFG--G 1107
C+ W + + + C P + + T C+ +
Sbjct: 770 IHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQE 829
Query: 1108 RQCDQCQTNFWGNPNVECFPCDCDP------------SGSATSQCHQNNGTCVCHQG--I 1153
+ C+ W + + C S S H + C G I
Sbjct: 830 GEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRI 889
Query: 1154 GGVRCDTCARGYIGTAPDCSP 1174
TC G + P C
Sbjct: 890 SEENETTCYMGKWSSPPQCEG 910
Score = 48.6 bits (115), Expect = 2e-05
Identities = 53/403 (13%), Positives = 86/403 (21%), Gaps = 56/403 (13%)
Query: 792 CVCKPNVVGRRCD-RCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRE 850
+ V G+ D C PG + + + C V K
Sbjct: 383 NHGRKFVQGKSIDVACHPGYALPKAQ-TTVTCMENGWSPTPRCIRVKTCSKSSIDIENGF 441
Query: 851 CDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGI 910
S + + C D +T I C
Sbjct: 442 IS-ESQYTYALKEKAKYQCKLGYVTADGETSGSIRCGKDGWSAQP--------------- 485
Query: 911 DIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRG------TRCDGCLDNYFG 964
C + + D + EC +GY + +
Sbjct: 486 --TCIKSCDIPVFMNARTKNDFTWFKLNDT-LDYECHDGYESNTGSTTGSIVCGYNGWSD 542
Query: 965 NPQERGGSCEPCDCSNNTDLALPGNCDTLTGKC-LQCR--YDTEGDHCQVCKAGFFGNAL 1021
P CE + + + C+ + G + C L
Sbjct: 543 LPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDL 602
Query: 1022 EQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCD-----------RCLKNHWKI 1070
+ + G T + V+ C+ +C+ W
Sbjct: 603 PICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTT 662
Query: 1071 ASGTGCEPCDCDPI-----GSVDVTECNEYTG---QCQCKSGF--GGRQCDQCQTNFWGN 1120
E C I G ++ Y G + C F G + C W
Sbjct: 663 LPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHGVW-T 721
Query: 1121 PNVECFPCDC----DPSGSATSQCHQNNGTCVCHQGIGGVRCD 1159
+C D S + H N H RC
Sbjct: 722 QLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCR 764
Score = 48.2 bits (114), Expect = 3e-05
Identities = 64/499 (12%), Positives = 117/499 (23%), Gaps = 66/499 (13%)
Query: 739 GDSYITVYRGV--PIPEACKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKP 796
G IT GV +P+ C + + + + C K
Sbjct: 709 GHRSITCIHGVWTQLPQ-CVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKE 767
Query: 797 NVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSG---------QCKCRA--Q 845
+ C + C + N ++ + C+
Sbjct: 768 GWIHTVCING-RWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYL 826
Query: 846 TYGRECDQCSPGYWN--YPTCQRCIC-------NGHADLCDSKTGT-------CISCRN- 888
E C G W ++ C +G + S + +C
Sbjct: 827 IQEGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGG 886
Query: 889 -STDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECK 947
EN C G + P PC P + G+ + + V +C
Sbjct: 887 FRISEENETTCYMGKWSSPPQCE---GLPCKSPPEISHGVVAHMSDSYQYGEE-VTYKCF 942
Query: 948 EGYR---GTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCR--- 1001
EG+ + + P C N G+ +
Sbjct: 943 EGFGIDGPAIAKCLGEKWSHPPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCAT 1002
Query: 1002 -YDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTG-------QCPCLP 1053
Y +G C + N + ++ + + + C
Sbjct: 1003 YYKMDGASNVTCINSRWTGRPTC-RDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRS 1061
Query: 1054 N--VIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTG---------QCQCK 1102
+ G CL +W C P +D + + + QC+
Sbjct: 1062 PYEMFGDEEVMCLNGNWTEPPQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQ 1121
Query: 1103 SGFG--GRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCD- 1159
+ + G + C+ W P PC G +
Sbjct: 1122 NLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEF 1181
Query: 1160 TCARGYIGTAPDCSPCGEC 1178
C RGY ++ + C
Sbjct: 1182 VCKRGYRLSSRSHTLRTTC 1200
Score = 42.8 bits (100), Expect = 0.001
Identities = 41/348 (11%), Positives = 64/348 (18%), Gaps = 57/348 (16%)
Query: 854 CSPGYWNYPTCQRCIC------NGHADLCDSKTGT----CISCRN---STDGENCERCIN 900
G+ P+C+ C NG K T CRN N +C +
Sbjct: 234 TESGWRPLPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTS 293
Query: 901 GYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYR--GTRCDGC 958
+ PC + + C E +
Sbjct: 294 TGWIPAPRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDH 353
Query: 959 LDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQV-CKAGFF 1017
+ C G K +G V C G+
Sbjct: 354 IHCTQDGWSPAVPCLRKCYFPYLE----NGYNQNHGRKF------VQGKSIDVACHPGYA 403
Query: 1018 GNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCE 1077
+ C R + I +G E
Sbjct: 404 L----PKAQTTVTCMENGWSPTPRCIRVKTCSKSSID---------------IENGFISE 444
Query: 1078 PCDCDPIGSVDVTECNE-YTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSA 1136
+ +C Y + +C + W CD
Sbjct: 445 SQYTYALKEKAKYQCKLGYV-----TADGETSGSIRCGKDGWSAQPTCIKSCDIPV---- 495
Query: 1137 TSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDS 1184
+ + C GY + C N S
Sbjct: 496 --FMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNGWS 541
Score = 36.6 bits (84), Expect = 0.089
Identities = 57/345 (16%), Positives = 89/345 (25%), Gaps = 59/345 (17%)
Query: 885 SCRN--STDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDV 942
CR + G C G + RPC PG G +
Sbjct: 33 KCRPGYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKA 92
Query: 943 ICECKEGYR-----GTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKC 997
+ C EGY+ R C + + N CE C T P N ++
Sbjct: 93 VYTCNEGYQLLGEINYRE--CDTDGWTNDIPI---CEVVKCLPVTA---PENGKIVSSAM 144
Query: 998 LQCRYDTEGDHCQV-CKAGF--FGNALEQNCTECTCNILGI-DHSKGPCDRTTGQCPCLP 1053
R G + C +G+ G+ E C+ G K C + + P +
Sbjct: 145 EPDREYHFGQAVRFVCNSGYKIEGDE------EMHCSDDGFWSKEKPKCVEISCKSPDVI 198
Query: 1054 N--------------VIGVSCD-----------RCLKNHWKIASGTGCEPCDCDPIGSVD 1088
N C+ C ++ W+ + CD I + D
Sbjct: 199 NGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEKSCDNPYIPNGD 258
Query: 1089 VTECNE-----YTGQCQCKSGF---GGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQC 1140
+ QC++GF +C + W P
Sbjct: 259 YSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGWIPAPRCTLKPCDYPDIKHGGLY 318
Query: 1141 HQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGEC-FDNWDS 1184
H+N +G C + + C D W
Sbjct: 319 HENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSP 363
Score = 36.3 bits (83), Expect = 0.14
Identities = 55/396 (13%), Positives = 86/396 (21%), Gaps = 79/396 (19%)
Query: 806 CAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECD-QCSPGYWNYPTC 864
C + C+ C V A +N V S R +G+ C+ GY
Sbjct: 111 CDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGY------ 164
Query: 865 QRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVE 924
+ + C + + I+ D G I +
Sbjct: 165 ---------KIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPISQKIIYKENER- 214
Query: 925 SGLSYADTCQLDPRSQDVICECKEGYR--GTRCDGCLDN-YFGNPQERGGSCEPCDCSNN 981
+C GY C ++ + P SC+ N
Sbjct: 215 -----------------FQYKCNMGYEYSERGDAVCTESGWRPLPSCEEKSCDNPYIPNG 257
Query: 982 TDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGP 1041
P TG + + C+ GF+ C
Sbjct: 258 D--YSPLRIKHRTGDEITYQ----------CRNGFY---PATRGNTAKC----------- 291
Query: 1042 CDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQC 1101
T+ P CD H + P +G C+E+
Sbjct: 292 ---TSTGWIPAPRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETP-- 346
Query: 1102 KSGFGGRQCDQCQTNFWGNPNVECFPCDC----DPSGSATSQCHQNNGTCV--CHQG--- 1152
C + W C + + + CH G
Sbjct: 347 --SGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYAL 404
Query: 1153 IGGVRCDTCARGYIGTAPDCSPCGECFDNWDSILRG 1188
TC P C C + I G
Sbjct: 405 PKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENG 440
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 53.9 bits (128), Expect = 4e-07
Identities = 44/389 (11%), Positives = 76/389 (19%), Gaps = 13/389 (3%)
Query: 803 CDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYP 862
+ G C H + C+ T +QC +
Sbjct: 144 RNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWG--PTENHCQTLTRTVCAEQCDGRCYGPY 201
Query: 863 TCQRCICNGHADLCDSKTGTCISCRNSTDGENC-ERCINGYYGDPRLGIDIPCRPCPCPG 921
C K C +C N D C +C + +P
Sbjct: 202 VSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTY 261
Query: 922 TVESGLSYADTCQLDPRSQDVIC-----ECKEGYRGTRCDGCLDNYFGNPQERGGSCEPC 976
+D S C E +E GS
Sbjct: 262 GAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSA 321
Query: 977 DCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGID 1036
+++++ NC + G + GD +A L I
Sbjct: 322 QTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQ 381
Query: 1037 HSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYT 1096
+ + V K T + I + ++ +
Sbjct: 382 SWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSN 441
Query: 1097 GQCQCKSGF-----GGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQ 1151
+ Q + N S + C +
Sbjct: 442 LCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRR 501
Query: 1152 GIGGVRCDTCARGYIGTAPDCSPCGECFD 1180
G C Y G + C +
Sbjct: 502 FSRGRICIESCNLYDGEFREFENDSICVE 530
Score = 47.7 bits (112), Expect = 3e-05
Identities = 49/451 (10%), Positives = 87/451 (19%), Gaps = 48/451 (10%)
Query: 773 CDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNI 832
+ + C RC A C+ +
Sbjct: 143 VRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYV 202
Query: 833 CDVVSGQCK-------------CRAQTYGREC-DQCSPGYWNYPTCQRCICNGHADLCDS 878
D +C C C QC + PT + N +A
Sbjct: 203 SDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTYG 262
Query: 879 KT--GTCISCRNSTDGENCERCINGYY---------GDPRLGIDIPCRPCPCPGTVESGL 927
C C + P I G++ S
Sbjct: 263 AFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQ 322
Query: 928 SYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDC--------- 978
+ + + I + E+
Sbjct: 323 TVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQS 382
Query: 979 --SNNTDLALPGNCDTLTGKCLQCRY---DTEGDHCQVCKAGFFGNALEQNCTECTCNIL 1033
N TD ++ N T+ G+ L + + N + L
Sbjct: 383 WPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNL 442
Query: 1034 GIDHS---KGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCD------CDPI 1084
H+ + N +C + S GC C
Sbjct: 443 CYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRF 502
Query: 1085 GSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNN 1144
+ + + + C +C + P ++
Sbjct: 503 SRGRICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDG 562
Query: 1145 GTCVCHQGIGGVRCDTCARGYIGTAPDCSPC 1175
CV G ++ Y +C PC
Sbjct: 563 PNCVEKCPDGLQGANSFIFKYADPDRECHPC 593
Score = 33.5 bits (75), Expect = 0.79
Identities = 51/354 (14%), Positives = 75/354 (21%), Gaps = 35/354 (9%)
Query: 775 CDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICD 834
C +SK + G +CKP D C G G + +D +
Sbjct: 280 CVRACPSSKMEVEENGIKMCKPC-----TDICPKACDGIGTGSLMSAQTVDSSNIDKFIN 334
Query: 835 VVSGQCKCRAQTYGRECDQ------CSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRN 888
G D P N R I T S +
Sbjct: 335 CTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFS 394
Query: 889 STDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKE 948
+ +G I + +G Y +
Sbjct: 395 NLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLF 454
Query: 949 GYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEG-D 1007
R + N G C S+ P C C + +
Sbjct: 455 STINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQC----LSCRRFSRGRICIE 510
Query: 1008 HCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNH 1067
C + F + C EC D + C G D C K
Sbjct: 511 SCNLYDGEFREFENDSICVEC-------DPQCEKMEDGLLTC------HGPGPDNCTKCS 557
Query: 1068 WKIASGTGCEPC-DCDPIGSVDVTECNEYTGQCQ-----CKSGFGGRQCDQCQT 1115
E C D + + + + +C C G G C
Sbjct: 558 HFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHPCHPNCTQGCNGPTSHDCIY 611
Score = 31.9 bits (71), Expect = 2.2
Identities = 21/271 (7%), Positives = 44/271 (16%), Gaps = 22/271 (8%)
Query: 304 CECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRI 363
C +C W P + +C+
Sbjct: 151 LTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHREC 210
Query: 364 SGGV-------CDSCEHNTEGRNC-ERCKQYFYKDPNKEFSDPEVCLRC--------DCD 407
+GG C +C + + C +C Q F +P + + C
Sbjct: 211 AGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCP 270
Query: 408 PGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQ 467
+D C + G + +
Sbjct: 271 HNFVVDSSSCVRACPS------SKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTV 324
Query: 468 GTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCD 527
+ N T + + + + G +
Sbjct: 325 DSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWP 384
Query: 528 VISGQCKCKPHASGRTCSTPEQSYYSPPYDN 558
+
Sbjct: 385 PNMTDFSVFSNLVTIGGRVLYSGLSLLILKQ 415
Score = 31.9 bits (71), Expect = 2.4
Identities = 34/302 (11%), Positives = 56/302 (18%), Gaps = 17/302 (5%)
Query: 736 YRCGDSYITVYRGVPIPEACKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCK 795
C D G+ Q N +
Sbjct: 300 KPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEA 359
Query: 796 PNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCS 855
+ R GF + N + G+ + Q
Sbjct: 360 IDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSN-LVTIGGRVLYSGLSLLILKQQGI 418
Query: 856 PGYWNYPTCQRCICNGHADLCDSKTGTCI---SCRNSTDGENCERCINGYYGDPRLGIDI 912
+ N + + + ST + N + +
Sbjct: 419 TSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMV 478
Query: 913 PCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGS 972
C G G +C+ R + I C R
Sbjct: 479 CNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFEN-----------DSI 527
Query: 973 CEPCDCSNNTDLALPGNCDTLT-GKCLQCRYDTEGDHC-QVCKAGFFGNALEQNCTECTC 1030
C CD C C +C + +G +C + C G G
Sbjct: 528 CVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPD 587
Query: 1031 NI 1032
Sbjct: 588 RE 589
Score = 31.6 bits (70), Expect = 2.8
Identities = 17/264 (6%), Positives = 49/264 (18%), Gaps = 10/264 (3%)
Query: 264 KYYYAITQMIVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQ----------GL 313
Y T + + Y + + C+ + D C +
Sbjct: 242 FVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKP 301
Query: 314 NCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEH 373
+ C + + +QT + + TK + + +
Sbjct: 302 CTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAID 361
Query: 374 NTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCK 433
+ ++ + + + + + +L
Sbjct: 362 PEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSL 421
Query: 434 PNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDC 493
+ + + T + C +
Sbjct: 422 QFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNH 481
Query: 494 NQCLPHFWGLSESEEYGCKPCDCD 517
WG + C+
Sbjct: 482 LCSSDGCWGPGPDQCLSCRRFSRG 505
Score = 30.8 bits (68), Expect = 4.7
Identities = 37/340 (10%), Positives = 68/340 (20%), Gaps = 34/340 (10%)
Query: 859 WNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCP 918
W N + + C C ++C G + +
Sbjct: 139 WQDIVRNPWPSNLTLV-STNGSSGCGRC-----HKSCTGRCWGPTENHCQTLTRTVCAEQ 192
Query: 919 CPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDC 978
C G C S EC G G + C N G+C C
Sbjct: 193 CDGR----------CYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDS---GACVTQ-C 238
Query: 979 SNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFF--GNALEQNCTECTC-----N 1031
+Y + C F ++ + C
Sbjct: 239 PQTFVYNPTTFQLE---HNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENG 295
Query: 1032 ILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTE 1091
I C + + + D + + + D
Sbjct: 296 IKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYN 355
Query: 1092 CNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCV--- 1148
E + R+ PN+ F + + +
Sbjct: 356 AIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQ 415
Query: 1149 -CHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDSILR 1187
+ + G I + + C NW ++
Sbjct: 416 QGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFS 455
Score = 30.4 bits (67), Expect = 6.1
Identities = 51/471 (10%), Positives = 96/471 (20%), Gaps = 27/471 (5%)
Query: 441 CDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDC-TCKRNVEGRDCNQCLPH 499
C W E + C Q G C G C
Sbjct: 166 HKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDCFAC 225
Query: 500 FWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYDNF 559
C C Y+ + K ++ D+
Sbjct: 226 MNFNDSGA---CVTQ-CPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVV---DSS 278
Query: 560 LYEAENANCKTDKCVVEIRQPLGGGNENTWTGPGFMKGFENTGLVFEIDNIPTPMDYDIV 619
+ K + I+ + G G + + NI ++ +
Sbjct: 279 SCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKI 338
Query: 620 VRYEPVTNTDWENVDVIVEREGNVDINGPCGNAVPQDDIKRTRLPVGSRAVKVYPPACLE 679
+ + + D P+ + + + +
Sbjct: 339 -----------NGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNM 387
Query: 680 PGKKYKVHLIFHQDNNGTTGPSASILIDSIALLPNIQSIPFFQGPENFERAREFDHYRCG 739
+L+ +G S IL QS+ + Y
Sbjct: 388 TDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHT 447
Query: 740 DSYITVYRGVPIPEACKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVV 799
++ T++ + + + C G DQ +
Sbjct: 448 INWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRI 507
Query: 800 GRRCDRCAPGTYGFGPEG--CKACD--CNHVGALDNICDVVSGQ--CKCRAQTYGREC-D 852
G + C CD C + C KC G C +
Sbjct: 508 CIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVE 567
Query: 853 QCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYY 903
+C G + + + C C N +C +
Sbjct: 568 KCPDGLQGANSFIFKYADPDRE-CHPCHPNCTQGCNGPTSHDCIYYPWTGH 617
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 52.7 bits (125), Expect = 1e-06
Identities = 54/393 (13%), Positives = 88/393 (22%), Gaps = 24/393 (6%)
Query: 794 CKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQ 853
N + D G Y FG K C N+V C G + G +
Sbjct: 244 MLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDG--VRK 301
Query: 854 CSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIP 913
C I G + + + + L +
Sbjct: 302 CKKCEGPCRKVCNGIGIGEFKDSL----SINATNIKHFKNCTSISGDLHI----LPVAFR 353
Query: 914 CRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSC 973
++ + +I E L+ G ++ G
Sbjct: 354 GDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFS 413
Query: 974 EPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNIL 1033
N T L L + G + + FG + ++
Sbjct: 414 LAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGEN 473
Query: 1034 GIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECN 1093
+ C C C C C+ + +P V+ +EC
Sbjct: 474 KCKATGQVCHALCSPEGC-WGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECI 532
Query: 1094 EYTGQCQCKSGFG---GRQCDQCQTNFWGNPNVECFPC--DCDPSGSATSQCHQNNGTCV 1148
+ +C ++ GR D C C + T + V
Sbjct: 533 QCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYADAGHV 592
Query: 1149 CHQGIGGVRCD-TCARGYIGTAP-DCSPCGECF 1179
CH C C G G C G
Sbjct: 593 CHL------CHPNCTYGCTGPGLRGCPTNGPKH 619
Score = 48.9 bits (115), Expect = 2e-05
Identities = 62/438 (14%), Positives = 97/438 (22%), Gaps = 42/438 (9%)
Query: 764 MYVHHGANECDCDPTGSTSKYCDQLGGNCV-CKPNVVGRRCDRCAPGTYGFGPEGCKACD 822
M + + C + G C+ +C+ G P C
Sbjct: 152 MSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQ 211
Query: 823 C--NHVGALDNICDVVSGQCKCRAQTYGREC-DQCSPGYWNYPTCQRCICNGHADLCDSK 879
C G ++ C V CR C D C P PT + N
Sbjct: 212 CAAGCTGPRESDCLV------CRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGA 265
Query: 880 T--GTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDP 937
T C TD +C R + C+ C P +
Sbjct: 266 TCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIG----EF 321
Query: 938 RSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKC 997
+ I + D + RG S + +L + +TG
Sbjct: 322 KDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFL 381
Query: 998 LQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIG 1057
L + + N L ++
Sbjct: 382 LIQAWPENRTDLHAFE----------NLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKE 431
Query: 1058 VSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNF 1117
+S + + K S T+ G+ +CK+
Sbjct: 432 ISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGC 491
Query: 1118 WGNPNVECFPCDC----------DPSGSATSQCHQNNGTCV-CHQGIGGVRCDTCARGYI 1166
WG +C C + N C+ CH C A
Sbjct: 492 WGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPE-----CLPQAMNIT 546
Query: 1167 GTAPDCSPCGECFDNWDS 1184
T C +C D
Sbjct: 547 CTGRGPDNCIQCAHYIDG 564
Score = 41.2 bits (95), Expect = 0.004
Identities = 41/363 (11%), Positives = 76/363 (20%), Gaps = 28/363 (7%)
Query: 767 HHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVG-RRCDRCAPGTYGFGPEGCKACDCNH 825
+ + C Y + G CK R+ A + H
Sbjct: 275 YVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKH 334
Query: 826 VGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCIS 885
+I + P + + I + T +
Sbjct: 335 FKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLH 394
Query: 886 CRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICE 945
+ + +G + + ++I + G + + + I
Sbjct: 395 AFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVII-SGNKNLCYANTINW 453
Query: 946 CKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTE 1005
K + + N N + G CS G C+ CR +
Sbjct: 454 KKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPE------GCWGPEPRDCVSCRNVSR 507
Query: 1006 GDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLK 1065
G C + E + C G D C++
Sbjct: 508 GRECVD----------KCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQ 557
Query: 1066 NHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCK----------SGFGGRQCDQCQT 1115
I + C +G + C +G G R C
Sbjct: 558 CAHYIDGPHCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLRGCPTNGP 617
Query: 1116 NFW 1118
Sbjct: 618 KHH 620
Score = 38.8 bits (89), Expect = 0.020
Identities = 34/217 (15%), Positives = 55/217 (25%), Gaps = 18/217 (8%)
Query: 978 CSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDH 1037
S++ + + G C +C C G A E+NC + T I
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKC--------DPSCPNGSCWGAGEENCQKLTKIICAQQC 195
Query: 1038 SKGPCDRTTGQC---PCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNE 1094
S ++ C C G CL T + C P + +
Sbjct: 196 SGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTC---PPLMLYNPTTYQ 252
Query: 1095 YTGQCQCKSGFGGRQCDQCQTNFWGNPN----VECFPCDCDPSGSATSQCHQNNGTCVCH 1150
+ K FG +C N+ + C + +C + G C
Sbjct: 253 MDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKV 312
Query: 1151 QGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDSILR 1187
G+ + T IL
Sbjct: 313 CNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILP 349
Score = 38.1 bits (87), Expect = 0.029
Identities = 36/226 (15%), Positives = 55/226 (24%), Gaps = 43/226 (19%)
Query: 956 DGCLDNYFGNPQERGGSCEPCD---------------CSNNTDLALPGNCD--------- 991
L N + Q GSC+ CD C T + C
Sbjct: 146 SDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPS 205
Query: 992 -TLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCP 1050
+C C VC+ + C + TT Q
Sbjct: 206 DCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLML-----------YNPTTYQMD 254
Query: 1051 CLPNVI----GVSCDRCLKNHWKIASGTGCEPCDCD--PIGSVDVTECNEYTGQCQCKSG 1104
P +C +N+ G+ C D + V +C + G C+
Sbjct: 255 VNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCN 314
Query: 1105 FGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCH 1150
G + + N++ F SG G H
Sbjct: 315 GIGIGEFKDSLSIN-ATNIKHFKNCTSISGDLHILPVAFRGDSFTH 359
Score = 37.7 bits (86), Expect = 0.035
Identities = 31/305 (10%), Positives = 62/305 (20%), Gaps = 26/305 (8%)
Query: 277 SCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTN 336
C + + C + + + + C+ GS
Sbjct: 226 VCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVR 285
Query: 337 AC---KQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNK 393
AC + KC E G + N + K +
Sbjct: 286 ACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDL 345
Query: 394 EFSDPEVCLRCDCDPGGSLDDGICDPY-----TDDVLVSGKCH------CKPNVGGRRCD 442
+ T +L+ N+ R
Sbjct: 346 HILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGR 405
Query: 443 MCKDGFWNFNETNPNGCEPC--------TCNIQGTINSQGCNKDTGDCTCKRNVEGRDCN 494
+ G ++ + N ++ + N C +T + G+
Sbjct: 406 TKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTK 465
Query: 495 QCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSP 554
++ C G D C+ + GR C +
Sbjct: 466 IISNRGENKCKATGQVCHALCSPEGCWGPEPRD----CVSCRNVSRGRECVDKCKLLEGE 521
Query: 555 PYDNF 559
P +
Sbjct: 522 PREFV 526
Score = 35.0 bits (79), Expect = 0.30
Identities = 25/256 (9%), Positives = 49/256 (19%), Gaps = 18/256 (7%)
Query: 298 DMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVY 357
D+V + N + + Q +
Sbjct: 142 DIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRG 201
Query: 358 NSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGIC 417
S C + +C C+++ + C C P +
Sbjct: 202 KSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEA---------TCKDT-CPPLMLYNPTTY 251
Query: 418 DPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNK 477
+ K + G C + + + + C K
Sbjct: 252 -------QMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKK 304
Query: 478 DTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDN-NCDVISGQCKCK 536
G C N G + + C D D +
Sbjct: 305 CEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLD 364
Query: 537 PHASGRTCSTPEQSYY 552
P + E + +
Sbjct: 365 PQELDILKTVKEITGF 380
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor,
immunity, signaling transferase; HET: NAG NDG; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3p11_A*
Length = 621
Score = 50.8 bits (120), Expect = 4e-06
Identities = 57/442 (12%), Positives = 95/442 (21%), Gaps = 44/442 (9%)
Query: 771 NECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDC--NHVGA 828
N C P K G+ C+ +C +G P C +C G
Sbjct: 160 NGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGP 219
Query: 829 LDNICDVVSGQCKCRAQTYGREC-DQCSPGYWNYPTCQRCI--CNGHADLCDSKTGTCIS 885
D C CR C +C + + +C
Sbjct: 220 QDTDCFA------CRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPH 273
Query: 886 CRNSTDGENCERCINGYYGDPRLGI----------DIPCRPCPCPGTVESGLSYADTCQL 935
C + G+ C ++ S +
Sbjct: 274 NFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFV 333
Query: 936 DPRS-------QDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNN-TDLALP 987
+ ++ D N F +E G + + ++
Sbjct: 334 NCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVF 393
Query: 988 GNCDTLTGKCLQ----CRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCD 1043
N T+ G+ L + + L HS
Sbjct: 394 SNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSL-NWT 452
Query: 1044 RTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKS 1103
+ I + R C C G C Y+ C +
Sbjct: 453 KVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVT 512
Query: 1104 G-----FGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQ-----NNGTCVCHQGI 1153
R+ F +P + +GS + C Q + CV
Sbjct: 513 HCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPH 572
Query: 1154 GGVRCDTCARGYIGTAPDCSPC 1175
G + Y +C PC
Sbjct: 573 GVLGAKGPIYKYPDVQNECRPC 594
Score = 45.8 bits (107), Expect = 1e-04
Identities = 45/360 (12%), Positives = 73/360 (20%), Gaps = 23/360 (6%)
Query: 837 SGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENC- 895
G C+ T QC+ + Q C + C +CR+ D C
Sbjct: 178 PGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACV 237
Query: 896 ERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVIC--ECKEGY--- 950
RC + + P P + G +C + C C
Sbjct: 238 PRCPQPLVYNK---LTFQLEPNPH-TKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEV 293
Query: 951 --RGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDH 1008
G + E GS +++++ NC + G GD
Sbjct: 294 DKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDP 353
Query: 1009 CQVCKAGFFGNALEQNCTECTCNILGIDHSKG---------PCDRTTGQCPCLPNVIGVS 1059
A L I G+ +
Sbjct: 354 WHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLI 413
Query: 1060 CDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWG 1119
S + + + + + + N
Sbjct: 414 MKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGP--TEERLDIKHNRPR 471
Query: 1120 NPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECF 1179
V S C G C T G + + ECF
Sbjct: 472 RDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECF 531
Score = 43.9 bits (102), Expect = 5e-04
Identities = 47/380 (12%), Positives = 84/380 (22%), Gaps = 46/380 (12%)
Query: 821 CDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKT 880
H+ +D V + + GR C C
Sbjct: 134 DKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSED----------- 182
Query: 881 GTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQ 940
C+ T +C +G P + C C
Sbjct: 183 -----CQTLTKTICAPQCNGHCFGPN------PNQCCHDECAGGCSGPQDTDCF------ 225
Query: 941 DVICECKEGYRGTRC-DGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQ 999
C+ C C N + + +T G C C
Sbjct: 226 ----ACRHFNDSGACVPRCPQPLVYNKL-----TFQLEPNPHTKYQYGGVCVA---SCPH 273
Query: 1000 CRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVS 1059
+ + C C L +G + Q N+ G
Sbjct: 274 NFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFV 333
Query: 1060 CDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWG 1119
+ + TG I ++D + N + + + NF
Sbjct: 334 NCTKILGNLDF-LITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSV 392
Query: 1120 NPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECF 1179
N+ + + +N G + G I + + C
Sbjct: 393 FSNLTTIGGRSLYNRGFSLLIMKNLNVTSL----GFRSLKEISAGRIYISANRQLCYHHS 448
Query: 1180 DNWDSILRGLADQTTKVITD 1199
NW +LRG ++ + +
Sbjct: 449 LNWTKVLRGPTEERLDIKHN 468
Score = 41.2 bits (95), Expect = 0.003
Identities = 52/413 (12%), Positives = 85/413 (20%), Gaps = 31/413 (7%)
Query: 765 YVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCN 824
+ GA C +K QL N K G C +AC +
Sbjct: 230 FNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPD 289
Query: 825 HVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCI 884
+ N + + + + + + D + T
Sbjct: 290 KMEVDKNGLKMCEPCGGLCPKACEGTGSGS---------RFQTVDSSNIDGFVNCTKILG 340
Query: 885 SCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVIC 944
+ G N + DP G + S
Sbjct: 341 NLDFLITGLNGDPWHKIPALDPEKLNVFRT-VREITGYLNIQSWPPHMHNFSVFSNLTTI 399
Query: 945 ECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDT 1004
+ Y + N N G + ++
Sbjct: 400 GGRSLYNRGFSLLIMKNL--NVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRG 457
Query: 1005 EGD-HCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRC 1063
+ + + + + G GP + + V C+
Sbjct: 458 PTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFL 517
Query: 1064 LKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNV 1123
+ A C C EC G C +G G C QC G V
Sbjct: 518 NGEPREFAHEAECFSCH---------PECQPMEGTATC-NGSGSDTCAQCAHFRDGPHCV 567
Query: 1124 ECFPCDCDPSGSATSQCHQNNGTCV-CHQ-------GIGGVRCDTCARGYIGT 1168
P + + C CH+ G C IG
Sbjct: 568 SSCPHGVLGAKGPIYKYPDVQNECRPCHENCTQGCKGPELQDCLGQTLVLIGK 620
Score = 35.4 bits (80), Expect = 0.22
Identities = 28/277 (10%), Positives = 61/277 (22%), Gaps = 14/277 (5%)
Query: 302 GRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTG 361
E G +C C + W P + Q +
Sbjct: 151 RDAEIVVKDNGRSCPPCHEVCKGRCWGP-----GSEDCQTLTKTICAPQCNGHCFGPNPN 205
Query: 362 RISGGVCDSCEHNTEGRNCERCKQYFYKD------PNKEFSDPEVCLRCDCDPGGSLDDG 415
+ C + +C C+ + P + G
Sbjct: 206 QCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGG 265
Query: 416 ICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGC 475
+C V + C + ++ K+G + C G+
Sbjct: 266 VCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVD 325
Query: 476 NKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKC 535
+ + + G + + + G + P + + ++ Q
Sbjct: 326 SSNIDGFVNCTKILG-NLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWP 384
Query: 536 KPHASGRTCSTPEQSYYSPPYDNF--LYEAENANCKT 570
+ S Y+ L +N N +
Sbjct: 385 PHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTS 421
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 7e-06
Identities = 103/576 (17%), Positives = 173/576 (30%), Gaps = 191/576 (33%)
Query: 1305 LQENNVEGALELTRQAHDTSLKLKEQ-----STETEKQINDAERQCKRTENLVTKTFPQF 1359
L ++E L + + + +L+EQ TE D E LV K F +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP--AELVGK-FLGY 67
Query: 1360 TQGQEENEKALQR---LNEKITSLEKN-LP--DLNELICDKRGDPCDNLCGGAGCGKCGG 1413
E K Q LN +T E L D++ L +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE---------------- 111
Query: 1414 MWCSNGTLSESNS-AKDYAETSKKLINEKESKAEE--LRKHMIILSESNSAKDYAETSKK 1470
++ TL ++ K+Y ++ + K L + +A+ A
Sbjct: 112 ---NDTTLVKTKELIKNYIT-ARIMAKRPFDKKSNSALFRA----VGEGNAQLVA----- 158
Query: 1471 LINEKEAKAEEVFRGITTAKQ--------ESHAANILAK--EAY--------DHAASVRN 1512
+F G Q E L + Y +A +
Sbjct: 159 -----------IFGG-----QGNTDDYFEE------LRDLYQTYHVLVGDLIKFSAETLS 196
Query: 1513 KTAAYVASTSNI-TKQLD--EFLNAPGAT-----LADIRNIS----GL-------AVNKN 1553
+ + T+ L+ E+L P T L I IS G+ K
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTAKL 255
Query: 1554 IQSNPEQIRERANEINNVIKSLTD-IDTILTETAGDLAKANDLKRKANLTKAGADSTKNT 1612
+ P ++R +K T ++T A +A+ + +S +
Sbjct: 256 LGFTPGELRSY-------LKGATGHSQGLVTAVA--IAETDS-----------WESFFVS 295
Query: 1613 VQKIVDVL----TEARTAQDMAEVAIQTAKDDISAARKD----LSQITNDLDDAQ-QKS- 1662
V+K + VL A + +D + LS I+ +L Q Q
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-IS-NLTQEQVQDYV 353
Query: 1663 NETNVKVKLLQERLKSIQAGFLQNGRSAM-------DVENEEKNLEKEVALAQKQASGL- 1714
N+TN L K ++ L NG + + L K K SGL
Sbjct: 354 NKTN---SHLPAG-KQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRK-----AKAPSGLD 403
Query: 1715 RSRYQETDNK-----------------LLSKAESSGLKRARGQMLLNKASQLSVNTTAKL 1757
+SR ++ K LL A K + A + +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI------ 457
Query: 1758 KQLNETEAMFNSQE-SELTELSKNIAELQKRIQSCI 1792
++++ + S+L LS +I+E RI CI
Sbjct: 458 -------PVYDTFDGSDLRVLSGSISE---RIVDCI 483
Score = 48.9 bits (116), Expect = 2e-05
Identities = 46/298 (15%), Positives = 85/298 (28%), Gaps = 114/298 (38%)
Query: 1491 QESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFL-NAPGATLADIRNISGLA 1549
Q S + + Y + + ++ + + D + G ++ DI
Sbjct: 1624 QGSQEQG-MGMDLYKTSKAAQD-----------VWNRADNHFKDTYGFSILDI------- 1664
Query: 1550 VNKNIQSNP------------EQIRER-------------------ANEINNVIKSLT-- 1576
+ +NP ++IRE EIN S T
Sbjct: 1665 ----VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 1577 -DIDTI-LTE------TAGDLAKANDLKRKANLTK------------------AGADSTK 1610
+ + T+ T + A DLK K + A S +
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 1611 NTV----------QKIVDVLTEARTAQDMAEV------------AIQTAKDDISAARKDL 1648
+ V Q V R+ M + A+Q + + L
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 1649 SQITNDLDDAQQ--KSNET---NVKVKLLQE-RLKSIQAGFLQNGRSAMDVENEEKNL 1700
+I N + QQ + + + +L +L+ I LQ ++ +E E +L
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ---KSLSLEEVEGHL 1895
Score = 42.0 bits (98), Expect = 0.003
Identities = 57/326 (17%), Positives = 94/326 (28%), Gaps = 130/326 (39%)
Query: 1334 TEKQI-NDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPD--LN-- 1388
I E+ + EN F G+ + EK + +NE TS L+
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 1389 ---------------ELICDKRGDPCDNLCGGAGCGKCGGMWCSNGTLS--ESNSAKDYA 1431
E + K P D AG S E +A
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATF--AG-------------HSLGE-YAA---- 1769
Query: 1432 ETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVF-RGITTAK 1490
L S A+ ++S E+ ++ VF RG+T
Sbjct: 1770 -----LA----SLAD-------VMS--------IESLVEV----------VFYRGMTM-- 1793
Query: 1491 QESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGL-- 1548
Q + + L + Y A + AA + E L + + +G
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFS---------QEALQ---YVVERVGKRTGWLV 1841
Query: 1549 -AVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGAD 1607
VN N++ +Q V AGDL + + N K
Sbjct: 1842 EIVNYNVE--NQQY---------VA-------------AGDLRALDTVTNVLNFIK---- 1873
Query: 1608 STKNTVQKIVDV--LTEARTAQDMAE 1631
+QKI D+ L ++ + +++
Sbjct: 1874 -----LQKI-DIIELQKSLSLEEVEG 1893
Score = 40.8 bits (95), Expect = 0.006
Identities = 62/425 (14%), Positives = 106/425 (24%), Gaps = 176/425 (41%)
Query: 498 PHFWGLSESEEYGCKPCDCDPGASYDNNCDVIS-GQCKCKPHASGRTCSTPEQSY----- 551
L + D + + +++ + P +TP++ Y
Sbjct: 193 ETLSELIRT------TLDAEK--VFTQGLNILEWLE---NPS------NTPDKDYLLSIP 235
Query: 552 YSPPYDNFLYEAEN--ANCKT-DKCVVEIRQPLGGG--------------NENTWTGPGF 594
S P + + + K E+R L G ++W F
Sbjct: 236 ISCPL-IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW--ESF 292
Query: 595 MKGFENT----GLVFEI-------------------------DNIPTPMDYDIVVRYEPV 625
F + ++F I + +P+PM + +
Sbjct: 293 ---FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM---LSIS---- 342
Query: 626 TNTDWENVDVIVER-------EGNVDI---NGP-----CGNAVPQD-------------- 656
N E V V + V+I NG G PQ
Sbjct: 343 -NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP--PQSLYGLNLTLRKAKAP 399
Query: 657 -DIKRTRLPVGSRAVKVY----P---P---ACLEPGKKYKVHLIFHQDNNGTTGPSASIL 705
+ ++R+P R +K P P L P LI ++
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA----SDLINKDL------VKNNVS 449
Query: 706 IDSIALLPNIQSIPFFQGPENFERAREFD------HYRCGDSYITVYRGVPI--PEACKK 757
++ + IP + + R C I +P+ +
Sbjct: 450 FNAKDI-----QIPVYD-TFDGSDLRVLSGSISERIVDC----IIR---LPVKWETTTQF 496
Query: 758 QHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPE- 816
+ I D P G S LG + N G GT P+
Sbjct: 497 KATHI----------LDFGP-GGAS----GLGV--LTHRNKDGTGVRVIVAGTLDINPDD 539
Query: 817 --GCK 819
G K
Sbjct: 540 DYGFK 544
Score = 35.8 bits (82), Expect = 0.16
Identities = 51/385 (13%), Positives = 104/385 (27%), Gaps = 131/385 (34%)
Query: 1514 TAAYVASTSNITKQL-DEF---LNAPGATLA-DIRNIS---------GLAVNKNIQSNPE 1559
TA++ ++ QL ++F L P A D + G + S
Sbjct: 24 TASFFIAS-----QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 1560 QIRE--------------RANEINNVIKSLTDIDTILTETAGDLAKA-----NDLKRKAN 1600
Q + N+I+ + L + +L K KR +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 1601 ------LTKAGADSTKNTV-----Q-KIVDVLTEARTAQDMAEVAIQTAKDDISAARKDL 1648
L +A + V Q D E R V + + +L
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 1649 SQITND--------------LDDAQQKSNETNVK--------VKLLQ------------- 1673
+ T D L++ ++ + + ++Q
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 1674 --ERLKSIQAGFLQNGR---------SAMDVENEEKNLEKEVALAQKQASGLRSRYQET- 1721
L+S G + + E+ ++ K + + G+R E
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI--GVRC--YEAY 314
Query: 1722 -----DNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTE 1776
+L + + G + LS+ + +Q+ + N +
Sbjct: 315 PNTSLPPSILEDSLENN----EGVP----SPMLSI-SNLTQEQVQDYVNKTN------SH 359
Query: 1777 LSKNIAELQKRIQ-SCIN----FIV 1796
L K+++ S +N +V
Sbjct: 360 LPAG-----KQVEISLVNGAKNLVV 379
Score = 33.9 bits (77), Expect = 0.62
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 55/138 (39%)
Query: 1186 LRGLADQTTKVITD----------ASNIKQTGASGAYTKEFELLEKKIEDVKALVENTTR 1235
RG+ Q V D A N + AS + E ++ +VE +
Sbjct: 1788 YRGMTMQVA-VPRDELGRSNYGMIAINPGRVAASFS-----------QEALQYVVERVGK 1835
Query: 1236 SSHDLTVMLTTIDDMKKQIMN-NEDPNG--V--GK-----TLGNT-----TQRINLARLA 1280
+ L V +I+N N N V G T+ N Q+I++ L
Sbjct: 1836 RTGWL-V----------EIVNYNV-ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 1281 LNDLTEEIKKLNKTGEML 1298
+ EE++ L
Sbjct: 1884 KSLSLEEVE------GHL 1895
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate
IMMU system, blood, membrane, cytolysin, immune SYST;
HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB:
4a5w_B* 4e0s_B*
Length = 913
Score = 50.3 bits (119), Expect = 7e-06
Identities = 56/401 (13%), Positives = 98/401 (24%), Gaps = 49/401 (12%)
Query: 772 ECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDR-CAPGTYGFGPE--GCKACDCNHVGA 828
+ C +P + G C C GTYG E G
Sbjct: 487 RKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQ 546
Query: 829 LDNICDVVSGQCKCRAQTYGRECDQCSP--GYWNYPTCQRCICNGHADLCDSKTGTCISC 886
+ + ++ REC+ +P G +R + + ++ CI+
Sbjct: 547 WGCWSSWSTCDATYK-RSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCIND 605
Query: 887 RNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICEC 946
+ CP P E+G + QL +DV C
Sbjct: 606 DEEMKEVDLPEIE-------------ADSGCPQPVPPENG-FIRNEKQLYLVGEDVEISC 651
Query: 947 KEGYR--GTRCDGCLDN---YFGNPQERGGSCEPCDCSNNTDLALPG----NCDTLTGKC 997
G+ G + CL + G+ + + C + +++ C
Sbjct: 652 LTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTC 711
Query: 998 LQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIG 1057
+ + G C+ + + TC K + G C G
Sbjct: 712 PKG-FVVAGPSRYTCQGNSWTPPI---SNSLTC-------EKDTLTKLKGHCQLGQKQSG 760
Query: 1058 VSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNF 1117
C D D C +C CQ
Sbjct: 761 SECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGR 820
Query: 1118 WGNPNVECFPCDCDPSGSAT---------SQCHQNNGTCVC 1149
+E + + + +C + CVC
Sbjct: 821 QLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVC 861
Score = 34.9 bits (79), Expect = 0.30
Identities = 20/131 (15%), Positives = 29/131 (22%), Gaps = 11/131 (8%)
Query: 428 GKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRN 487
G C G C C + + + + C + S C C +
Sbjct: 750 GHCQLGQKQSGSECI-CMSPEEDCSHHSEDLC-VFDTDSNDYFTSPACKFLAEKCLNNQQ 807
Query: 488 VEGRDCNQCLPHFWGLSESEEYGC-----KPCDCDPGASYDN-NCDVISGQCKCKPHASG 541
+ C E K C YD C + +C C
Sbjct: 808 LHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVCLL---P 864
Query: 542 RTCSTPEQSYY 552
C Y
Sbjct: 865 PQCFKGGNQLY 875
Score = 31.0 bits (69), Expect = 4.5
Identities = 51/321 (15%), Positives = 80/321 (24%), Gaps = 45/321 (14%)
Query: 276 GSCSCYGHASRCLPISEADT----KPDMVHGRCE--CTHNTQGLNCEKCIDFYNDLPWKP 329
+ +A++ P A +P + C C T G NCEK Y
Sbjct: 486 LRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDG 545
Query: 330 AFG--SQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYF 387
+G S + C + + +C+ G+ G E T +
Sbjct: 546 QWGCWSSWSTCDATYKRSRTRECNNPAPQRG--GKRCEGEKRQEEDCTFSIMENNGQPCI 603
Query: 388 YKDPNKEFSD-PEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVG----GRRCD 442
D + D PE+ C ++G LV G G +
Sbjct: 604 NDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYF 663
Query: 443 MC-KDGFWN--FNETNPNGCEPCTCNIQGTINSQG---CNKDTGDCTCKRN--VEGRDCN 494
C DG W E C TI ++ + TC + V G
Sbjct: 664 RCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRY 723
Query: 495 QCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSP 554
C + W C+ + Q
Sbjct: 724 TCQGNSWTPPI-------SNSLT---------------CEKDTLTKLKGHCQLGQKQSGS 761
Query: 555 PYDNFLYEAENANCKTDKCVV 575
E + ++ D CV
Sbjct: 762 ECICMSPEEDCSHHSEDLCVF 782
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 49.9 bits (118), Expect = 8e-06
Identities = 34/239 (14%), Positives = 59/239 (24%), Gaps = 19/239 (7%)
Query: 773 CDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGC-KACDCNHVGALDN 831
+ Q C + C C C N D
Sbjct: 163 AKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDD- 221
Query: 832 ICDVVSGQC-KCRAQTYGREC-DQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNS 889
+C CR C + C P Y+++ + + DL + +
Sbjct: 222 -----PTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQ 276
Query: 890 T---DGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICEC 946
+ + C +GY + + PC PCP + + C
Sbjct: 277 YVIHNNKCIPECPSGYTMNSSNLLCTPCLG-PCPKVCHLLEGEKTIDSVTSAQELRGCTV 335
Query: 947 KEG------YRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQ 999
G G L+ G +E G + L+ + G+ L+
Sbjct: 336 INGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLE 394
Score = 46.8 bits (110), Expect = 7e-05
Identities = 28/232 (12%), Positives = 50/232 (21%), Gaps = 30/232 (12%)
Query: 270 TQMIVRGSCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKP 329
IV C ++ T + C
Sbjct: 142 DNHIVLNKDDNEECGDICPGTAKGKTNCP--ATVINGQFVERCWTHSHCQKVCPT----- 194
Query: 330 AFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNC-ERCKQYFY 388
CK C CH E + N + C +C + C E C +Y
Sbjct: 195 -------ICKSHGCTAEGLCCH-SECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYY 246
Query: 389 KDPNKEFSDPEVCLRC---------DCDPGGSLDDG----ICDPYTDDVLVSGKCHCKPN 435
+ + C + + C + C
Sbjct: 247 HFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLG 306
Query: 436 VGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRN 487
+ C + + + T+ CT I G++ + + N
Sbjct: 307 PCPKVCHLLEGEKTIDSVTSAQELRGCTV-INGSLIINIRGGNNLAAELEAN 357
Score = 45.3 bits (106), Expect = 2e-04
Identities = 34/226 (15%), Positives = 53/226 (23%), Gaps = 47/226 (20%)
Query: 851 CDQCSPGYWNYPTCQRCICNGH-ADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLG 909
D C C + NG + C + + C C
Sbjct: 156 GDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGC-------------- 201
Query: 910 IDIPCRPC--PCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRC-DGCLDNYFGNP 966
C C G S C C+ Y RC + C Y+
Sbjct: 202 -TAEGLCCHSECLGNC-SQPDDPTKCV----------ACRNFYLDGRCVETCPPPYYHFQ 249
Query: 967 QERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCT 1026
R + C ++ C + C +G+ N+ CT
Sbjct: 250 DWRCVNFSFCQDLHHK-------CKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT 302
Query: 1027 ECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIAS 1072
C GPC + + V+ + L+ I
Sbjct: 303 PCL----------GPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
Score = 42.2 bits (98), Expect = 0.002
Identities = 39/204 (19%), Positives = 52/204 (25%), Gaps = 30/204 (14%)
Query: 818 CKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNY---PTCQRC--ICNGH 872
C G + V++GQ R T+ C ++ C C G+
Sbjct: 156 GDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGN 215
Query: 873 ADLCDSKTGTCISCRNSTDGENC-ERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYAD 931
D T C++CRN C E C YY + C D
Sbjct: 216 CSQPDDPT-KCVACRNFYLDGRCVETCPPPYYHFQD-WRCVNFSFCQ------------D 261
Query: 932 TCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCD 991
S+ C + C Y N C PC P C
Sbjct: 262 LHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNL--LCTPCLGPC------PKVCH 313
Query: 992 TLTGKCL--QCRYDTEGDHCQVCK 1013
L G+ E C V
Sbjct: 314 LLEGEKTIDSVTSAQELRGCTVIN 337
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 49.1 bits (116), Expect = 1e-05
Identities = 79/430 (18%), Positives = 144/430 (33%), Gaps = 79/430 (18%)
Query: 1418 NGTLSESNSAKDYAETSKKLIN-EKESKAEELRKHMIILSESNSAKDYAETSKKLINEKE 1476
NG LS + KDY + + K ++ EK + KH ++ S Y SK
Sbjct: 468 NGDLSYT--LKDYGKKADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPN---- 521
Query: 1477 AKAEEVFRGITTAKQESHAANILAKEAYDHAASVRN-------------KTAAYVASTSN 1523
+G+ SH K A + + N K A S
Sbjct: 522 -------KGVGATNGVSHLEAGFNKVAVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQE 574
Query: 1524 ITKQLDEFLNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILT 1583
K + +FL++ N + N +++++ ++ KSL + +
Sbjct: 575 ANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLE---KSLRKREHLEK 631
Query: 1584 ETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTE-----ARTAQDMAEVA----- 1633
E L + K K KA A+S K+ + +++ Q++ +
Sbjct: 632 EVEKKLESKSGNKNKMEA-KAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSD 690
Query: 1634 -IQTAKDDISAARKDLSQITNDLDDAQQKSNET-----------------NVKVKLLQER 1675
++ D+ K + N + K+ ET KV+ L
Sbjct: 691 KLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAA 750
Query: 1676 LKSIQAG----FLQNGRSAMDVENEEK-------------NLEKEVALAQKQASGLRSRY 1718
L + G F + ++ D+EN K NL + V++A+ R
Sbjct: 751 LNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDFSRVEQ 810
Query: 1719 QETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELS 1778
D K SK + + + K S+L + +N+T E T L+
Sbjct: 811 VLADLKNFSKEQLAQQAQKNEDFNTGKNSEL---YQSVKNSVNKTLVGNGLSGIEATALA 867
Query: 1779 KNIAELQKRI 1788
KN ++++K +
Sbjct: 868 KNFSDIKKEL 877
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 46.1 bits (109), Expect = 1e-05
Identities = 23/167 (13%), Positives = 62/167 (37%), Gaps = 14/167 (8%)
Query: 1620 LTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSI 1679
+ + + +++++ +K L + + ++ KS E ++K + LKS+
Sbjct: 2 MKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSL 61
Query: 1680 QAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARG 1739
+A + + E E K L ++ A+ +A + + +
Sbjct: 62 EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS---------IDDLED 112
Query: 1740 QMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQK 1786
++ K +++ +++ + E S+ L +A L+K
Sbjct: 113 ELYAQKLKYKAIS-----EEMKQLEDKVEELLSKNYHLENEVARLKK 154
Score = 40.3 bits (94), Expect = 0.001
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 1265 KTLGNTTQRINLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTS 1324
K L +R L+ +L EE+K + + L+ A + E E + S
Sbjct: 28 KLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK--EDKYE--EEIKVLS 83
Query: 1325 LKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEEN----------EKALQRLN 1374
KLKE E + AER + E + + + + E ++ L
Sbjct: 84 DKLKE----AETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELL 139
Query: 1375 EKITSLEKNLPDLNEL 1390
K LE + L +L
Sbjct: 140 SKNYHLENEVARLKKL 155
Score = 37.3 bits (86), Expect = 0.013
Identities = 21/141 (14%), Positives = 57/141 (40%)
Query: 1591 KANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQ 1650
+ L+ K + +N V ++ +L A +++E ++++ +L
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60
Query: 1651 ITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQ 1710
+ + QK ++ ++K+L ++LK + RS +E +LE E+ + +
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120
Query: 1711 ASGLRSRYQETDNKLLSKAES 1731
+ ++ ++K+
Sbjct: 121 YKAISEEMKQLEDKVEELLSK 141
Score = 35.3 bits (81), Expect = 0.070
Identities = 18/165 (10%), Positives = 56/165 (33%), Gaps = 39/165 (23%)
Query: 1626 AQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQ 1685
+D E + + + ++++ L+ A++++ + K L+E LK++
Sbjct: 5 LEDKVEELLS-KNYHL--ENE-VARLKKLLERAEERAELSEGKSAELEEELKTVTN---- 56
Query: 1686 NGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNK 1745
+ +E + + ++ +++ L + +E + + AE
Sbjct: 57 ---NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRA-EFAE--------------- 97
Query: 1746 ASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQS 1790
+ + + E + E EL + + ++
Sbjct: 98 ------------RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta
propeller, cholesterol clearance, PCSK autocatalytic
cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 48.7 bits (115), Expect = 2e-05
Identities = 58/361 (16%), Positives = 83/361 (22%), Gaps = 46/361 (12%)
Query: 863 TCQRCICNGHADLCDSKTGTCIS----------CRNSTDGENCE---------RCINGYY 903
TC C C + CI C N +D + C RC +G
Sbjct: 59 TCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKC 118
Query: 904 GDPRLGID-----------IPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRG 952
+ D C C S QL D CE G
Sbjct: 119 ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCE-----DG 173
Query: 953 TRCDGCLDNYFGNPQERGGSCEPCD--CSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQ 1010
+ Q C + C + + CD C + + D E
Sbjct: 174 SDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD-C-KDKSDEENCAVA 231
Query: 1011 VCKAGFFGNALEQ---NCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNH 1067
C+ F + +C D S C PN C+
Sbjct: 232 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLC-EGPNKFKCHSGECITLD 290
Query: 1068 WKIASGTGCEPCDCDPIGSVDVTECNEYTGQC--QCKSGFGGRQCDQCQTNFWGNPNVEC 1125
C +PI EC + G C C G +C
Sbjct: 291 KVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 350
Query: 1126 FPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRC-DTCARGYIGTAPDCSPCGECFDNWDS 1184
+C + + C G C G T A +G+ +
Sbjct: 351 DIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 410
Query: 1185 I 1185
+
Sbjct: 411 L 411
Score = 47.1 bits (111), Expect = 6e-05
Identities = 60/367 (16%), Positives = 94/367 (25%), Gaps = 59/367 (16%)
Query: 866 RCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYY--------GDPRLGIDIPCRPC 917
+ L + T C + +CI+ + D C
Sbjct: 4 KLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV 63
Query: 918 PCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDG--CLDNYF------------ 963
C S + C D +C G C C + F
Sbjct: 64 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQF 123
Query: 964 ---GNPQERGGS----CEPCDCSNNTDLALPGNCDTLTGKC---LQCRYDT-EGDHCQVC 1012
+ GS C C + C C C + E
Sbjct: 124 VCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRG 183
Query: 1013 KAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIAS 1072
F G++ + E C HS CD C + + C + ++ +
Sbjct: 184 LYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGP-DCKDKSDEENCAVATCRPDEFQCSD 242
Query: 1073 GT---GCEPCDC--------DPIGSVDVTECNEYTGQCQCKSGF---GGRQCDQCQTNFW 1118
G G CD D +G V+VT C + +C SG + C+ +
Sbjct: 243 GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEG-PNKFKCHSGECITLDKVCNMARDCRD 301
Query: 1119 GN--PNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCG 1176
+ P EC +C + + VC+ G C + C
Sbjct: 302 WSDEPIKECGTNEC--------LDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 353
Query: 1177 ECFDNWD 1183
EC D
Sbjct: 354 ECQDPDT 360
Score = 45.6 bits (107), Expect = 2e-04
Identities = 58/411 (14%), Positives = 102/411 (24%), Gaps = 58/411 (14%)
Query: 772 ECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDR---CAPG------TYGFGPEGCKACD 822
+ C S G C P RCD C G + C
Sbjct: 57 QETCLSVTCKSGDFSCGGRVNRCIPQF--WRCDGQVDCDNGSDEQGCPPKTCSQDEFRCH 114
Query: 823 CNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGT 882
+ +CD C + C + G ++ C C CD+
Sbjct: 115 DGKCISRQFVCD---SDRDCLDGSDEASCPVLTCGPASF-QCNSSTCIPQLWACDN---- 166
Query: 883 CISCRNSTDGENCE-RCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQD 941
C + +D R + + GD PC + + C P
Sbjct: 167 DPDCEDGSDEWPQRCRGLYVFQGDSS-----PCSAFEFHCLSGECIHSSWRCDGGP---- 217
Query: 942 VICECKEGYRGTRCDGCLDNYFGNPQERGGSCEP--------CDCSNNTDLALPGNCDTL 993
C+ K C + F Q G+C DC + +D C +
Sbjct: 218 -DCKDKSDEENCAVATCRPDEF---QCSDGNCIHGSRQCDREYDCKDMSD---EVGCVNV 270
Query: 994 TGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRT-----TGQ 1048
T ++ C L++ C D C G
Sbjct: 271 TLCEGPNKFKCHSGECI---------TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG 321
Query: 1049 CPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGR 1108
C + N + + + + +++ + CE D C G +C+ G +
Sbjct: 322 CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQ 381
Query: 1109 QCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCD 1159
+ F + T + + + + +
Sbjct: 382 LDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 432
Score = 37.9 bits (87), Expect = 0.033
Identities = 40/344 (11%), Positives = 70/344 (20%), Gaps = 49/344 (14%)
Query: 769 GANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGA 828
G++E C C+ + CD G +
Sbjct: 134 GSDEASCPVLTCGPASFQCNSSTCIPQLW----ACDNDPDCEDGSDEWPQRCRGLYVFQG 189
Query: 829 LDNICDVVSGQC---KCRAQTYGRECD---QCSPGYWNYPTCQRCICNGHADLCDSKTGT 882
+ C C +C ++ CD C + C C C G
Sbjct: 190 DSSPCSAFEFHCLSGECIHSSW--RCDGGPDCKDKS-DEENCAVATCRPDEFQCSD--GN 244
Query: 883 CISCRNSTDGENCERCINGYYGDPRLGIDIPCRP--CPCPGTVESGLSYADTCQLDPRSQ 940
CI D E C + + + + P C C +
Sbjct: 245 CIHGSRQCDREYD--CKDMSDEVGCVNVTLCEGPNKFKCHS---------GECITLDKVC 293
Query: 941 DVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQC 1000
++ +C++ + + N C C G L
Sbjct: 294 NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIG--------YECLCPDGFQLVA 345
Query: 1001 RYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSC 1060
+ E + T + K C+ G +
Sbjct: 346 QRRCEDIDE-----------CQDPDTCSQLCVNLEGGYKCQCE--EGFQLDPHTKACKAV 392
Query: 1061 DRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSG 1104
+ D S+ N + S
Sbjct: 393 GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN 436
Score = 35.2 bits (80), Expect = 0.25
Identities = 29/237 (12%), Positives = 52/237 (21%), Gaps = 20/237 (8%)
Query: 332 GSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCD---SCEHNTEGRNCE--RCKQY 386
G C+ C E +++S CD C+ ++ NC C+
Sbjct: 183 GLYVFQGDSSPCSAFEFHCLSGECIHSS------WRCDGGPDCKDKSDEENCAVATCRPD 236
Query: 387 FYKDPNKE-FSDPEVC-LRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNV---GGRRC 441
++ + C DC + + K C + C
Sbjct: 237 EFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEG---PNKFKCHSGECITLDKVC 293
Query: 442 DMCKD-GFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHF 500
+M +D W+ G C N G + K +C C + +C
Sbjct: 294 NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 353
Query: 501 WGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYD 557
+ K +
Sbjct: 354 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 410
Score = 32.1 bits (72), Expect = 1.9
Identities = 39/316 (12%), Positives = 74/316 (23%), Gaps = 25/316 (7%)
Query: 332 GSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCD---SCEHNTEGRNCERCKQYFY 388
GS +C C S +C+ + CD CE ++ Y +
Sbjct: 134 GSDEASCPVLTCGPASFQCNSSTCIPQLW------ACDNDPDCEDGSDEWPQRCRGLYVF 187
Query: 389 KDPNKEFSDPEV-CLRCDCDPGGSLDDGICD-PYTDDVLVSGKCHCKPNV---------- 436
+ + S E CL +C DG D D C+P+
Sbjct: 188 QGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIH 247
Query: 437 GGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRN-VEGRDCNQ 495
G R+CD D +E C + +S C C R+ + D
Sbjct: 248 GSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPI 307
Query: 496 CLPHFWGLSESE---EYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYY 552
++ + C + +++ + + +
Sbjct: 308 KECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN 367
Query: 553 SPPYDNFLYEAENANCKTDKCVVEIRQPLGGGNENTWTGPGFMKGFENTGLVFEIDNIPT 612
E K + N +
Sbjct: 368 LEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV 427
Query: 613 PMDYDIVVRYEPVTNT 628
+D ++ ++
Sbjct: 428 ALDTEVASNRIYWSDL 443
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF, DSL,
notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 45.4 bits (108), Expect = 3e-05
Identities = 38/220 (17%), Positives = 58/220 (26%), Gaps = 74/220 (33%)
Query: 944 CECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYD 1003
C + Y G C+ C P D G
Sbjct: 19 VTCDDYYYGFGCNK--------------FCRPRDDFFG------HYACDQNGNK------ 52
Query: 1004 TEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRC 1063
C G+ G + C+ G C G C C G+ CD+C
Sbjct: 53 -------TCMEGWMGPECNRAICRQGCSPKH-----GSCKLP-GDCRCQYGWQGLYCDKC 99
Query: 1064 LKNHWKIASGTGCEPCDCDPIGSVDVTECN----EYTGQCQCKSGFGGRQCDQCQTNFWG 1119
+ P C QC C++ +GG+ CD+
Sbjct: 100 I-----------PHPG------------CVHGICNEPWQCLCETNWGGQLCDK------- 129
Query: 1120 NPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCD 1159
+ N C G+ ++ + C C +G G C+
Sbjct: 130 DLNYCGTHQPCLNGGTCSNT-GPDKYQCSCPEGYSGPNCE 168
Score = 44.7 bits (106), Expect = 6e-05
Identities = 44/188 (23%), Positives = 59/188 (31%), Gaps = 53/188 (28%)
Query: 771 NECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDR--CAPGTYGFGPEGCKACDCNHVGA 828
C CDQ GN C +G C+R C G C H
Sbjct: 32 KFCRPRDDFFGHYACDQ-NGNKTCMEGWMGPECNRAICRQG-----------CSPKH--- 76
Query: 829 LDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRN 888
C + G C+C+ G CD+C P +P C ICN C+ C
Sbjct: 77 --GSC-KLPGDCRCQYGWQGLYCDKCIP----HPGCVHGICNE--------PWQCL-CET 120
Query: 889 STDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKE 948
+ G+ C++ +N PC TC + C C E
Sbjct: 121 NWGGQLCDKDLN-----------YCGTHQPC--------LNGGTCS-NTGPDKYQCSCPE 160
Query: 949 GYRGTRCD 956
GY G C+
Sbjct: 161 GYSGPNCE 168
Score = 43.9 bits (104), Expect = 1e-04
Identities = 34/176 (19%), Positives = 51/176 (28%), Gaps = 48/176 (27%)
Query: 1011 VCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKI 1070
C ++G + C G C+ +G C+R +
Sbjct: 20 TCDDYYYGFGCNKFCRPRDD------FFGHYACDQNGNKTCMEGWMGPECNRAI------ 67
Query: 1071 ASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPN------VE 1124
C C P G C+C+ G+ G CD+C +P E
Sbjct: 68 -----CR-QGCSPKHGSCKL-----PGDCRCQYGWQGLYCDKCIP----HPGCVHGICNE 112
Query: 1125 CFPCDCDP------------SGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGT 1168
+ C C+ C N GTC + G +C +C GY G
Sbjct: 113 PWQCLCETNWGGQLCDKDLNYCGTHQPC-LNGGTCS-NTGPDKYQC-SCPEGYSGP 165
Score = 38.1 bits (89), Expect = 0.009
Identities = 29/151 (19%), Positives = 41/151 (27%), Gaps = 46/151 (30%)
Query: 403 RCDCDPG--GSLDDGICDPYTD-----DVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETN 455
CD G + C P D +G C G C
Sbjct: 18 AVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPEC-----------NRA 66
Query: 456 PNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCD 515
+ G K GDC C+ +G C++C+PH P
Sbjct: 67 ICRQGCSPKH--------GSCKLPGDCRCQYGWQGLYCDKCIPH-------------PG- 104
Query: 516 CDPGASYDNNCDVISGQCKCKPHASGRTCST 546
C G + QC C+ + G+ C
Sbjct: 105 CVHGICNE------PWQCLCETNWGGQLCDK 129
Score = 37.7 bits (88), Expect = 0.012
Identities = 29/165 (17%), Positives = 44/165 (26%), Gaps = 50/165 (30%)
Query: 818 CKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCD 877
+ +H G+++ C YG C++ R GH
Sbjct: 2 RGSHHHHHHGSIEG-----RSAVTCDDYYYGFGCNK--------FCRPRDDFFGHY--AC 46
Query: 878 SKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDP 937
+ G C G C R I P G+ +
Sbjct: 47 DQNGNKT-CMEGWMGPECNRAIC------------RQGCSPKHGSCKLP----------- 82
Query: 938 RSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEP---CDCS 979
C C+ G++G CD C+ +P G C C C
Sbjct: 83 ----GDCRCQYGWQGLYCDKCIP----HPGCVHGICNEPWQCLCE 119
Score = 30.0 bits (68), Expect = 3.9
Identities = 34/152 (22%), Positives = 42/152 (27%), Gaps = 43/152 (28%)
Query: 763 GMYVHHGANECDCDPTGSTSKYCDQ---------------LGGNCVCKPNVVGRRCDRCA 807
G Y C G C++ L G+C C+ G CD+C
Sbjct: 42 GHYACDQNGNKTCME-GWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCI 100
Query: 808 PGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQ-- 865
P C H IC QC C G+ CD+ + C
Sbjct: 101 PH-----------PGCVH-----GIC-NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNG 143
Query: 866 -RCICNGHADLCDSKTGTCISCRNSTDGENCE 896
C G C SC G NCE
Sbjct: 144 GTCSNTGPD------KYQC-SCPEGYSGPNCE 168
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 47.7 bits (112), Expect = 3e-05
Identities = 53/410 (12%), Positives = 86/410 (20%), Gaps = 22/410 (5%)
Query: 763 GMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACD 822
Y + P S G C G +GP+ + C
Sbjct: 152 AYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCH 211
Query: 823 CNHVGALDNICDVVSGQC-KCRAQTYGREC-DQCSPGYWNYPTCQRCICNGHADLCDSKT 880
G C C+ C ++C P PT N T
Sbjct: 212 LFCAGGCTGPTQ---KDCIACKNFFDEGVCKEECPPMRKYNPTTYVLETNPEGKYAYGAT 268
Query: 881 G-TCISCRNSTDGENCER-CINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPR 938
D C R C + G++ +D
Sbjct: 269 CVKECPGHLLRDNGACVRSCPQDKMDKGGECVP----CNGPCPKTCPGVTVLHAGNIDSF 324
Query: 939 SQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCL 998
+ + G D Y + +TG
Sbjct: 325 RNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVF-----STVKEITGYLN 379
Query: 999 QCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGV 1058
+ + + + + + + R Q VI
Sbjct: 380 IEGTHPQFRNLSYFRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQH 439
Query: 1059 SCDRCLKNH--WKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKS----GFGGRQCDQ 1112
+ D C ++ W + + D+ E N QC G G QC
Sbjct: 440 NRDLCYVSNIRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWGAGTDQCLN 499
Query: 1113 CQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCA 1162
C+ + + + C + C G G C C
Sbjct: 500 CKNFNFNGTCIADCGYISNAYKFDNRTCKICHPECRTCNGAGADHCQECV 549
Score = 41.9 bits (97), Expect = 0.002
Identities = 46/397 (11%), Positives = 81/397 (20%), Gaps = 36/397 (9%)
Query: 803 CDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYP 862
Y + + + + C G C+ + QC+ G P
Sbjct: 146 VSNGTDAYYNYDFTAPERECPKCHESCTHGC-WGEGPKNCQKFSKLTCSPQCAGGRCYGP 204
Query: 863 TCQRCICNGHADLCDSKTGT-CISCRNSTDGENC-ERCINGYYGDPRLGIDIPCRPCPCP 920
+ C A C T CI+C+N D C E C +P
Sbjct: 205 KPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTY----VLETNPE 260
Query: 921 GTVESGLSYADTCQLDPRSQDVIC--ECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDC 978
G G + C + C C + + N G +
Sbjct: 261 GKYAYGATCVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGN 320
Query: 979 SNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHS 1038
++ NC + G G Q A + +
Sbjct: 321 IDSFR-----NCTVIDGNIRILDQTFSG--FQDVYANYTMGPRYIPLDPERLEVFSTVKE 373
Query: 1039 KGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVD---------- 1088
G P N+ + + S + S++
Sbjct: 374 ITGYLNIEGTHPQFRNLSYFRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQISSG 433
Query: 1089 -------VTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCH 1141
C + ++ + C +
Sbjct: 434 SVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWGAG 493
Query: 1142 QNNGTCVCHQGIGGV---RCDTCARGYIGTAPDCSPC 1175
+ + G C + Y C C
Sbjct: 494 TDQCLNCKNFNFNGTCIADCGYISNAYKFDNRTCKIC 530
Score = 32.3 bits (72), Expect = 1.7
Identities = 30/256 (11%), Positives = 52/256 (20%), Gaps = 23/256 (8%)
Query: 298 DMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVY 357
++V + +N E+ ++ +G C++ + S +C
Sbjct: 144 EIVSNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYG 203
Query: 358 NSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGIC 417
C ++C CK +F + VC C P +
Sbjct: 204 PKPRECCHLFCAGGCTGPTQKDCIACKNFFDEG---------VCKEE-CPPMRKYNPTTY 253
Query: 418 DPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNK 477
T+ K G C N G +C C
Sbjct: 254 VLETN-------PEGKYAYGATCVKECPGHLLRDN-----GACVRSCPQDKMDKGGECVP 301
Query: 478 DTGDCTCKRNVEG-RDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCK 536
G C N +
Sbjct: 302 CNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLD 361
Query: 537 PHASGRTCSTPEQSYY 552
P + E + Y
Sbjct: 362 PERLEVFSTVKEITGY 377
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 47.9 bits (113), Expect = 4e-05
Identities = 57/393 (14%), Positives = 91/393 (23%), Gaps = 54/393 (13%)
Query: 837 SGQCKCRAQTYGRECDQCSPGYWNYP-TCQRCICNGHADLCDSKTGTCIS---------- 885
G+C + C G TC C C + CI
Sbjct: 15 DGKCISYKWVCDGSAE-CQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVD 73
Query: 886 CRNSTDGENCE---------RCINGYYGDPRLGID-----------IPCRPCPCPGTVES 925
C N +D + C RC +G + D C C
Sbjct: 74 CDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQ 133
Query: 926 GLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLA 985
S TC + D +C++G F + E C + +
Sbjct: 134 CNSS--TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH-CLSGECIH 190
Query: 986 LPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFF--GNAL----------EQNCT----ECT 1029
CD G + + D E C+ F + E +C E
Sbjct: 191 SSWRCDG--GPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVG 248
Query: 1030 CNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDV 1089
C + + +G+C + + C + G C + G V
Sbjct: 249 CVNVTLCEGPNKFKCHSGEC-ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHV 307
Query: 1090 TECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVC 1149
+ +C C GF +C+ C + G QC +
Sbjct: 308 CNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH 367
Query: 1150 HQGIGGVRCDTCARGYIGTAPDCSPCGECFDNW 1182
+ V
Sbjct: 368 TKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS 400
Score = 44.8 bits (105), Expect = 3e-04
Identities = 73/374 (19%), Positives = 113/374 (30%), Gaps = 77/374 (20%)
Query: 852 DQCSPGYWNYPTCQ--RCI-----CNGHADLCDSKTGTCISCRNSTDGEN-------CER 897
D+C + CQ +CI C+G A+ D + +C + T R
Sbjct: 4 DRCERNEF---QCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNR 60
Query: 898 CINGYY---GDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGY---R 951
CI ++ G + CP TC D C +G R
Sbjct: 61 CIPQFWRCDGQVDCDNGSDEQGCPPK-----------TCSQDE------FRCHDGKCISR 103
Query: 952 GTRCDG---CLDNYFGNPQERGGSCEP--CDCSNNTDLALPGNCDTLTGKCLQCRYDT-E 1005
CD CLD +C P C+++T + CD C + E
Sbjct: 104 QFVCDSDRDCLDGSDEASCPV-LTCGPASFQCNSSTCIPQLWACDN----DPDCEDGSDE 158
Query: 1006 GDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLK 1065
F G++ + E C HS CD C + + C
Sbjct: 159 WPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGP-DCKDKSDEENCAVATCRP 217
Query: 1066 NHWKIASGT---GCEPCDC--------DPIGSVDVTECNEYTGQCQCKSGF---GGRQCD 1111
+ ++ + G G CD D +G V+VT C + +C SG + C+
Sbjct: 218 DEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEG-PNKFKCHSGECITLDKVCN 276
Query: 1112 QCQTNFWGN--PNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTA 1169
+ + P EC +C + + VC+ G C +
Sbjct: 277 MARDCRDWSDEPIKECGTNEC--------LDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 328
Query: 1170 PDCSPCGECFDNWD 1183
C EC D
Sbjct: 329 RRCEDIDECQDPDT 342
Score = 44.4 bits (104), Expect = 4e-04
Identities = 37/274 (13%), Positives = 59/274 (21%), Gaps = 48/274 (17%)
Query: 767 HHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHV 826
G++E C C+ + CD G +
Sbjct: 114 LDGSDEASCPVLTCGPASFQCNSSTCIPQLWA----CDNDPDCEDGSDEWPQRCRGLYVF 169
Query: 827 GALDNICDVVSGQC---KCRAQTYGRECD---QCSPGYWNYPTCQRCICNGHADLCDSKT 880
+ C C +C ++ CD C C C C
Sbjct: 170 QGDSSPCSAFEFHCLSGECIHSSW--RCDGGPDCKDKSDEEN-CAVATCRPDEFQCSD-- 224
Query: 881 GTCIS----------CRNSTDGENCE----------------RCINGYYG-----DPRLG 909
G CI C++ +D C CI D R
Sbjct: 225 GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDW 284
Query: 910 IDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQER 969
D P + C +++ + C C C +G++ C D +
Sbjct: 285 SDEPIKECGTNECLDNNGGCSHVCN--DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT 342
Query: 970 GGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYD 1003
G K +
Sbjct: 343 CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 376
Score = 42.1 bits (98), Expect = 0.002
Identities = 58/385 (15%), Positives = 90/385 (23%), Gaps = 50/385 (12%)
Query: 769 GANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGA 828
G++E C P + G C+ + V D C G+ C C
Sbjct: 77 GSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRD-CLDGSD---EASCPVLTCG---- 128
Query: 829 LDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRN 888
+C C P W C + +
Sbjct: 129 --------PASFQCN-------SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDS 173
Query: 889 STDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKE 948
S C++G D P + E + A + + D C
Sbjct: 174 SPCSAFEFHCLSGECIHSSWRCD--GGPDCKDKSDEENCAVATCRPDEFQCSDGNCI--- 228
Query: 949 GYRGTRCDG---CLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTE 1005
+ +CD C D S E C N T P +G+C D
Sbjct: 229 -HGSRQCDREYDCKD----------MSDE-VGCVNVTLCEGPNKFKCHSGEC--ITLDKV 274
Query: 1006 GDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLK 1065
+ + C+ E EC N G H + +C C V+ RC
Sbjct: 275 CNMARDCRDWSDEPIKECGTNECLDNNGGCSH-VCNDLKIGYECLCPDGFQLVAQRRCED 333
Query: 1066 NHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVEC 1125
T + C G G + F+ N +
Sbjct: 334 IDECQDPDTCSQLCVNLEGGYKCQC----EEGFQLDPHTKACKAVGSIAYLFFTNRHEVR 389
Query: 1126 FPCDCDPSGSATSQCHQNNGTCVCH 1150
++ +N
Sbjct: 390 KMTLDRSEYTSLIPNLRNVVALDTE 414
Score = 34.0 bits (77), Expect = 0.57
Identities = 25/228 (10%), Positives = 41/228 (17%), Gaps = 8/228 (3%)
Query: 335 TNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKE 394
C+ C E +++S G C F
Sbjct: 168 VFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNC 227
Query: 395 FSDPEVC-LRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNV---GGRRCDMCKDGFWN 450
C DC + + K C + C+M +D
Sbjct: 228 IHGSRQCDREYDCKDMSDEVGCVNVTLCEG---PNKFKCHSGECITLDKVCNMARDCRDW 284
Query: 451 FNETNPN-GCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEY 509
+E G C N G + K +C C + +C
Sbjct: 285 SDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS 344
Query: 510 GCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYD 557
+ K +
Sbjct: 345 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 392
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase;
HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Length = 486
Score = 47.2 bits (111), Expect = 5e-05
Identities = 33/222 (14%), Positives = 57/222 (25%), Gaps = 21/222 (9%)
Query: 851 CDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNST-DGENCERCINGYYGDPRLG 909
N+ + D+C +C + +G+ ERC +
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKV-- 191
Query: 910 IDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRC-DGCLDNYFGNPQE 968
C+ C S P C+ Y RC + C Y+
Sbjct: 192 CPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDW 251
Query: 969 RGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTEC 1028
R + C ++ C + C +G+ N+ CT C
Sbjct: 252 RCVNFSFCQDLHHK-------CKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPC 304
Query: 1029 TCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKI 1070
GPC + + V+ + L+ I
Sbjct: 305 ----------LGPCPKVCHLLEGEKTIDSVTSAQELRGCTVI 336
Score = 39.8 bits (92), Expect = 0.008
Identities = 22/198 (11%), Positives = 41/198 (20%), Gaps = 16/198 (8%)
Query: 304 CECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRI 363
CK C C E + N +
Sbjct: 162 TAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTA-EGLCCHSECLGNCSQPD 220
Query: 364 SGGVCDSCEHNTEGRNC-ERCKQYFYKDPNKEFSDPEVCLRC---------DCDPGGSLD 413
C +C + C E C +Y + + C +
Sbjct: 221 DPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIH 280
Query: 414 DG----ICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGT 469
+ C + C + C + + + T+ CT I G+
Sbjct: 281 NNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTV-INGS 339
Query: 470 INSQGCNKDTGDCTCKRN 487
+ + + N
Sbjct: 340 LIINIRGGNNLAAELEAN 357
Score = 39.1 bits (90), Expect = 0.014
Identities = 30/218 (13%), Positives = 54/218 (24%), Gaps = 8/218 (3%)
Query: 751 IPEACKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGT 810
I ++ + H + + + C T C N + T
Sbjct: 136 ILDSVEDNHIVLNKDDNEECGDI-CPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPT 194
Query: 811 YGFGPEGCKACDCNHVGALDNICDVVS-GQC-KCRAQTYGREC-DQCSPGYWNYPTCQRC 867
C H L N +C CR C + C P Y+++ +
Sbjct: 195 ICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCV 254
Query: 868 ICNGHADLCDSKTGTCISCRNS---TDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVE 924
+ DL + + + + C +GY + + PC CP
Sbjct: 255 NFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGP-CPKVCH 313
Query: 925 SGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNY 962
+ + C G G +
Sbjct: 314 LLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLA 351
Score = 37.9 bits (87), Expect = 0.034
Identities = 26/212 (12%), Positives = 47/212 (22%), Gaps = 12/212 (5%)
Query: 334 QTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNK 393
T + + ++ G I G + + + + +
Sbjct: 129 ATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHC 188
Query: 394 EFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKC-HCKPNVGGRRC-DMCKDGFWNF 451
+ P +C C G C KC C+ RC + C +++F
Sbjct: 189 QKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHF 248
Query: 452 NETNPNGCEPC-----TCNIQGTINSQGCNKDTGDC--TCKRNVEGRDCNQCLPHFWGLS 504
+ C C C C N G
Sbjct: 249 QDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPC 308
Query: 505 ESEEYGCKPCDCDPGASYD---NNCDVISGQC 533
+ + + C VI+G
Sbjct: 309 PKVCHLLEGEKTIDSVTSAQELRGCTVINGSL 340
Score = 34.4 bits (78), Expect = 0.37
Identities = 21/192 (10%), Positives = 41/192 (21%), Gaps = 18/192 (9%)
Query: 1009 CQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCP-----CLPNVIGVSCDRC 1063
+ + ++ + + I +K + CP V +
Sbjct: 119 IEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQF 178
Query: 1064 LKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGN--- 1120
++ W + P C G C C +C C+ +
Sbjct: 179 VERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCV 238
Query: 1121 --------PNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRC-DTCARGYIGTAPD 1171
+ + +C + I +C C GY
Sbjct: 239 ETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMN-SS 297
Query: 1172 CSPCGECFDNWD 1183
C C
Sbjct: 298 NLLCTPCLGPCP 309
Score = 32.5 bits (73), Expect = 1.5
Identities = 22/192 (11%), Positives = 35/192 (18%), Gaps = 8/192 (4%)
Query: 972 SCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQ-VCKAGFFGNALEQNCTECTC 1030
E C NC HCQ VC + E C
Sbjct: 151 DNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSH---GCTAEGLC 207
Query: 1031 NILGIDHSKGPCDRTTGQCPCLPNVIGVSC-DRCLKNHWKIASGTGCEPCDCDPIGSVDV 1089
+ D T C + C + C ++ C +
Sbjct: 208 CHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCK 267
Query: 1090 TECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVC 1149
+ C + +C + + N + P
Sbjct: 268 NSRRQ---GCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSV 324
Query: 1150 HQGIGGVRCDTC 1161
C
Sbjct: 325 TSAQELRGCTVI 336
Score = 31.7 bits (71), Expect = 2.2
Identities = 22/198 (11%), Positives = 43/198 (21%), Gaps = 20/198 (10%)
Query: 383 CKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCD 442
+ + + ++C I + + C
Sbjct: 141 EDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQK---------- 190
Query: 443 MCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDC-NQCLPHFW 501
+C + T C C + + T C+ C C P ++
Sbjct: 191 VCPTICKSHGCTAEGLCCHSECLGNCS----QPDDPTKCVACRNFYLDGRCVETCPPPYY 246
Query: 502 GLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYDNFLY 561
+ C + C Q + C S Y+ N L
Sbjct: 247 HFQDWRCVNFSFCQ-----DLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC 301
Query: 562 EAENANCKTDKCVVEIRQ 579
C ++E +
Sbjct: 302 TPCLGPCPKVCHLLEGEK 319
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 46.7 bits (110), Expect = 9e-05
Identities = 56/454 (12%), Positives = 97/454 (21%), Gaps = 81/454 (17%)
Query: 771 NECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDR--CAPGTYGFGPEGCKACDCNHVGA 828
L N C+P G+ + + C+ C
Sbjct: 1364 ASPTIPINDFEFPVGTSL--NYECRPGYFGKMFSISCLENLVWSSVEDNCRRKSCGPPPE 1421
Query: 829 LDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRN 888
N G + + CN L S + TC+ N
Sbjct: 1422 PFN------GMVHI-------------NTDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGN 1462
Query: 889 STDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKE 948
+ + C P T+ +G Y++ V +C
Sbjct: 1463 NVTWDKKAPICE-------------IISCEPPPTISNGDFYSNNRTSFHNGTVVTYQCHT 1509
Query: 949 GYRG----------TRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNC-------- 990
G G + D+ G C + ++
Sbjct: 1510 GPDGEQLFELVGERSIYCTSKDDQVGVWSSPPPRCISTNKCTAPEVENAIRVPGNRSFFS 1569
Query: 991 --DTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTG- 1047
+ + +C + G H C+ +C+ I H +
Sbjct: 1570 LTEIIRFRCQPG-FVMVGSHTVQCQTNGRWGPKLPHCSRVCQPPPEILHGEHTLSHQDNF 1628
Query: 1048 ------QCPCLPN--VIGVSCDRCLKNHWKIASGTGCEPCDCDPI------GSVDVTECN 1093
C P+ + G + C C CD G V +
Sbjct: 1629 SPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPRCTVKSCDDFLGQLPHGRVLLPLNL 1688
Query: 1094 EYTGQC--QCKSGF-----GGRQCDQCQTN-FWGNPNVECFPCDC-DPSGSATSQCHQNN 1144
+ + C GF C W + C C +P +
Sbjct: 1689 QLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTGTP 1748
Query: 1145 GTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGEC 1178
+ + CDT + C
Sbjct: 1749 FGDIPYGKEISYACDTHPDRGMTFNLIGESSIRC 1782
Score = 43.6 bits (102), Expect = 8e-04
Identities = 64/452 (14%), Positives = 101/452 (22%), Gaps = 57/452 (12%)
Query: 773 CDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCD-RCAPGTYGFGPEGCKACDCNHVGALDN 831
C + G V VG R + C G G + +
Sbjct: 956 DVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAECILSGNTAHWST 1015
Query: 832 ICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTD 891
+ + C D S N+ C+ G+
Sbjct: 1016 KPPICQ-RIPCGLPPTIANGDFISTNRENFHYGSVVTYR-----CNL--GSRGRKVFELV 1067
Query: 892 GENCERCINGYYGDPRLGIDIP---CRPCPCPGTVESGLSYADTCQLDPRSQDVICECKE 948
GE C + P P VE+G+ +D L ++ V C+
Sbjct: 1068 GEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQP 1127
Query: 949 GYR--GTRCDGCLDN---YFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCL-QCR- 1001
G+ G R C P P + + + + + C
Sbjct: 1128 GFVMKGPRRVKCQALNKWEPELPSCSRVCQPPPEILHGEHTPSHQDNFSPGQEVFYSCEP 1187
Query: 1002 -YDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPC---------DRTTGQCPC 1051
YD G C + C +C+ G + + C
Sbjct: 1188 GYDLRGAASLHCTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQLGAKVSFVCDE 1247
Query: 1052 LPNVIGVSCDRCL---KNHWKIASGTGCEPCDCDPI------------------GSVDVT 1090
+ G S C+ S CE C G
Sbjct: 1248 GFRLKGSSVSHCVLVGMRSLWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIPYGKEISY 1307
Query: 1091 ECNEYTGQCQCKSGFGGR----QCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGT 1146
C+ + + + G D W +P C Q + T
Sbjct: 1308 TCDPHPDRGMTFNLIGESTIRCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPT 1367
Query: 1147 CVCHQG---IGGVRCDTCARGYIGTAPDCSPC 1175
+ +G C GY G S
Sbjct: 1368 IPINDFEFPVGTSLNYECRPGYFGKMFSISCL 1399
Score = 32.5 bits (73), Expect = 1.7
Identities = 54/393 (13%), Positives = 95/393 (24%), Gaps = 71/393 (18%)
Query: 854 CSPGYWN--YPTCQRCIC-------NGHADLCDSK--------TGTCISCRNSTDGENCE 896
WN P C++ C NG + TC + +
Sbjct: 813 GMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLI 872
Query: 897 -----RCINGYYGDPRLGIDIP-CRPCPCPGTVESGLSYADTCQLDPRS----QDVICEC 946
RC + G+ P C + L Q + + EC
Sbjct: 873 GESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFPIGTSLKYEC 932
Query: 947 KEGYRG----TRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCR- 1001
+ Y G C L + SC+ N + + + + C
Sbjct: 933 RPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSCTT 992
Query: 1002 -YDTEGD---HCQVCKAGFFGNALEQNCTECTCNIL-----GIDHSKGPCDRTTGQ---- 1048
+ G C + + C C + G S + G
Sbjct: 993 GHRLIGHSSAECILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTY 1052
Query: 1049 -------CPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPI---------GSVDVTEC 1092
+ ++G C N ++ +G P P G +
Sbjct: 1053 RCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNR 1112
Query: 1093 NEY----TGQCQCKSGF--GGRQCDQCQTN-FWGNPNVECFPCDCDPSGSATSQCHQNNG 1145
+ + + +C+ GF G + +CQ W C P ++
Sbjct: 1113 SLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSRVCQPPP---EILHGEHTP 1169
Query: 1146 TCVCHQGIGGVRCDTCARGYIGTAPDCSPCGEC 1178
+ + G +C GY C
Sbjct: 1170 SHQDNFSPGQEVFYSCEPGYDLRGAASLHCTPQ 1202
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth
factor, NGF, neurotrophin, common neurotrophin receptor;
2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1
g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Length = 161
Score = 44.0 bits (103), Expect = 9e-05
Identities = 31/173 (17%), Positives = 47/173 (27%), Gaps = 42/173 (24%)
Query: 839 QCKCRAQTY---GRECDQCSPGYW-------NYPTCQRCICNGHADLCDSKTGTCISCRN 888
+ C Y G C C+ G N C+ C+ N S T C C
Sbjct: 1 KETCSTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSATEPCKPCTE 60
Query: 889 STDGEN-----------CERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDP 937
++ RC GYY D G C C
Sbjct: 61 CLGLQSMSAPCVEADDAVCRCAYGYYQDEETGHCEACSVCE------------------- 101
Query: 938 RSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPC-DCSNNTDLALPGN 989
++ C++ + T C+ C + + + C PC C +
Sbjct: 102 VGSGLVFSCQD-KQNTVCEECPEGTYSDEANHVDPCLPCTVCEDTERQLRECT 153
Score = 30.9 bits (69), Expect = 1.9
Identities = 31/160 (19%), Positives = 47/160 (29%), Gaps = 25/160 (15%)
Query: 996 KCLQCRYDTEGDHCQVCKAGFF----GNALEQNCTECTCNILGIDHSKG-----PCDRTT 1046
C Y G+ C+ C G A + C C N+ D PC
Sbjct: 3 TCSTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSATEPCKPCTECL 62
Query: 1047 GQCPCLPNVIGVS--CDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSG 1104
G + RC +++ CE C +GS V C +
Sbjct: 63 GLQSMSAPCVEADDAVCRCAYGYYQDEETGHCEACSVCEVGSGLVFSCQDKQN------- 115
Query: 1105 FGGRQCDQCQTNFW---GNPNVECFPC-DCDPSGSATSQC 1140
C++C + N C PC C+ + +C
Sbjct: 116 ---TVCEECPEGTYSDEANHVDPCLPCTVCEDTERQLREC 152
Score = 29.4 bits (65), Expect = 6.6
Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 364 SGGVCDSCEHNTEG-------RNCERCKQYFYKDPNKEFSDPEVCLRCDCDPG--GSLDD 414
+ VC+ C N C+ C + C C G +
Sbjct: 32 NQTVCEPCLDNVTFSDVVSATEPCKPCTECLGLQSMSAPCVEADDAVCRCAYGYYQDEET 91
Query: 415 GICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQG 474
G C+ + + SG + C+ C +G ++ + + C PCT +
Sbjct: 92 GHCEACSVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEANHVDPCLPCTVCEDTERQLRE 151
Query: 475 CNKDTGDCTCK 485
C D C+
Sbjct: 152 CTPWA-DAECE 161
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 44.3 bits (104), Expect = 1e-04
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 3/121 (2%)
Query: 1272 QRINLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQS 1331
Q AR L + E ++L E A + L + KL+ Q
Sbjct: 24 QSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83
Query: 1332 TETEKQINDAERQCKRTENL---VTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLN 1388
++ KQ++ E +T + + K + Q ++ E+A + + E+ L
Sbjct: 84 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAI 143
Query: 1389 E 1389
E
Sbjct: 144 E 144
Score = 37.4 bits (86), Expect = 0.020
Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 20/176 (11%)
Query: 1215 EFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQRI 1274
+F L+++ K L +S + L + ++ E + L QR
Sbjct: 4 DFSSLKEETAYWKELSMKYKQSFQEARDEL---VEFQEGSRELEAE--LEAQLVQAEQRN 58
Query: 1275 NLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTET 1334
+ L E++ L + E + Q + +E L TR + +L + E
Sbjct: 59 RDLQADNQRLKYEVEALKEKLEHQYAQSYK-QVSVLEDDLSQTRAIKE---QLHKYVREL 114
Query: 1335 EKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNEL 1390
E+ +D ER + T + E+ E+ L + E+ LE L + L
Sbjct: 115 EQANDDLERAKRATIMSL-----------EDFEQRLNQAIERNAFLESELDEKESL 159
Score = 29.3 bits (65), Expect = 7.6
Identities = 25/186 (13%), Positives = 67/186 (36%), Gaps = 12/186 (6%)
Query: 1486 ITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNI 1545
++ K+E+ L+ + R++ + + + +L+ L D++
Sbjct: 5 FSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA- 63
Query: 1546 SGLAVNKNIQSNPEQIRERANEINNVIKSL-------TDIDTILTETAGDLAKAND---- 1594
+ +++ E++ + + + L I L + +L +AND
Sbjct: 64 DNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123
Query: 1595 LKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITND 1654
KR ++ + N + L ++ V++Q KD+ R++L+
Sbjct: 124 AKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQ 183
Query: 1655 LDDAQQ 1660
+ ++
Sbjct: 184 QEVTRK 189
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 45.8 bits (107), Expect = 1e-04
Identities = 57/439 (12%), Positives = 95/439 (21%), Gaps = 38/439 (8%)
Query: 766 VHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNH 825
D + S+ C C G + C T GC C
Sbjct: 152 FRKNNQLAPVDIDTNRSRACPPCAPACKDNH-CWGESPEDCQILTGTICTSGCARCKGRL 210
Query: 826 VGALDNICDVV------SGQC-KCRAQTYGREC-DQCSPGYWNYPTCQRCICNGHADLCD 877
+ C C + C C + N
Sbjct: 211 PTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTF 270
Query: 878 SKTGTCISCRN---STDGENCERCINGYYGDPRLGIDIPCRPCP---CPGTVESGLSYAD 931
+ N + G C C C G+ +
Sbjct: 271 GASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLR 330
Query: 932 TCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLA-----L 986
+ + + G +++ G+P P L L
Sbjct: 331 GARAITSDNVQEFDGCKKIFG-SLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYL 389
Query: 987 PGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTT 1046
+ + + L + ++ G + L+ + G
Sbjct: 390 YISAWPDSLRDLSVFQNLRIIRGRILHDGAYSLTLQGLGIHSLGLRSLRELGSGLA--LI 447
Query: 1047 GQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFG 1106
+ L V V D+ +N + +G P + + CN C G G
Sbjct: 448 HRNAHLCFVHTVPWDQLFRNPHQALLHSGNRPEEDCGLEG---LVCNSLCAHGHC-WGPG 503
Query: 1107 GRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCV-CHQGIGGVRCDTCARGY 1165
QC C G VE + ++ C+ CH C
Sbjct: 504 PTQCVNCSHFLRGQECVEECRVWKGLPRE-----YVSDKRCLPCHPE-----CQPQNSSE 553
Query: 1166 IGTAPDCSPCGECFDNWDS 1184
+ C C DS
Sbjct: 554 TCFGSEADQCAACAHYKDS 572
Score = 30.7 bits (68), Expect = 4.9
Identities = 41/375 (10%), Positives = 67/375 (17%), Gaps = 25/375 (6%)
Query: 757 KQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRC-DRCAPGTYGFGP 815
+ H + + E +P G + + + C C P
Sbjct: 244 ELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTA 303
Query: 816 EGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADL 875
E +C + + A+ + Q G +
Sbjct: 304 EDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIFGSLAFLPESFDGD 363
Query: 876 CDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESG--------- 926
S + I GY + + G
Sbjct: 364 PSSGIAPLRPEQLQVFE--TLEEITGYLYISAWPDSLRDLSVFQNLRIIRGRILHDGAYS 421
Query: 927 --LSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDL 984
L L RS + + + R N +
Sbjct: 422 LTLQGLGIHSLGLRSLRELGSGLALIHRNAHLCFVHTVPWDQLFRNPHQALLHSGNRPEE 481
Query: 985 ALPGNCDTLTGKCLQCRYDTEG-DHCQVCKAGFFGNALEQNCTECTCNILGIDHSK--GP 1041
C G C C G + C K P
Sbjct: 482 DCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSDKRCLP 541
Query: 1042 CDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQC 1101
C G D+C S + C + +Y +
Sbjct: 542 CHPECQPQNSSETCFGSEADQCAACAHYKDSSSCVARCPSGVKPDLSYMPIWKYPDEE-- 599
Query: 1102 KSGFGGRQCDQCQTN 1116
C C N
Sbjct: 600 ------GICQPCPIN 608
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 42.9 bits (100), Expect = 2e-04
Identities = 24/166 (14%), Positives = 59/166 (35%), Gaps = 24/166 (14%)
Query: 1620 LTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSI 1679
L E+ Q E + + I++ + + + ++ N ++ + +K +
Sbjct: 8 LIESVDKQSHLEEQLNKSLKTIASQKAAIEN----YNQLKEDYNTLKRELSDRDDEVKRL 63
Query: 1680 QAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARG 1739
+ + E E L KEV L + + N +++ A ++
Sbjct: 64 REDIAKENELRTKAEEEADKLNKEV-------EDLTASLFDEANNMVADAR---KEKYAI 113
Query: 1740 QMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQ 1785
++L + ++ QL E + + ++ +L L K + L
Sbjct: 114 EILNKRLTE----------QLREKDTLLDTLTLQLKNLKKVMHSLD 149
Score = 37.9 bits (87), Expect = 0.008
Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 19/161 (11%)
Query: 1229 LVENTTRSSH---DLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQRINLARLALNDLT 1285
L+E+ + SH L L TI K I N + + ++ + L
Sbjct: 8 LIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLK---EDYNTLKRELSDRDDEVKRLR 64
Query: 1286 EEIKKLNK-TGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQ 1344
E+I K N+ + +E L +E A L +A++ +++ E Q
Sbjct: 65 EDIAKENELRTKAEEEADKLNKEVEDLTA-SLFDEANNMVADARKEKYAIEILNKRLTEQ 123
Query: 1345 CKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLP 1385
+ + L+ + L+ L + + SL+
Sbjct: 124 LREKDTLL-----------DTLTLQLKNLKKVMHSLDNEST 153
Score = 35.6 bits (81), Expect = 0.055
Identities = 18/122 (14%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 1559 EQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVD 1618
+ N + + + L++ ++ + + K N + A+ + + K V+
Sbjct: 30 ASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 89
Query: 1619 VLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKS 1678
LT + + A + ++ ARK+ I ++ E + + L +LK+
Sbjct: 90 DLTASLFDE---------ANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKN 140
Query: 1679 IQ 1680
++
Sbjct: 141 LK 142
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 44.9 bits (106), Expect = 2e-04
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 11/128 (8%)
Query: 417 CDPYTDDVLVSGKCHCKPNVGGRRC-------DMCKDGFWNFNETNPNGCEPCTCNIQGT 469
C + + H N + D ++G W + P C N
Sbjct: 36 CLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEE 95
Query: 470 INSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVI 529
++TGD + + + + +G DC ++
Sbjct: 96 A----VEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLED 151
Query: 530 SGQCKCKP 537
+ +
Sbjct: 152 KTERELLE 159
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion;
HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 43.1 bits (101), Expect = 3e-04
Identities = 26/146 (17%), Positives = 37/146 (25%), Gaps = 26/146 (17%)
Query: 1026 TECTCNILGIDHSKGPC----DRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDC 1081
+C C + C G C C IG +C+ + C +
Sbjct: 82 PQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN 141
Query: 1082 DPIGSVDVTECNE----YTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSAT 1137
I C+ GQC C + + EC +C+
Sbjct: 142 SII-------CSGLGDCVCGQCLCHTSDVPGKL-------IYGQYCECDTINCERYNGQV 187
Query: 1138 SQCHQN----NGTCVCHQGIGGVRCD 1159
G C CH G G C
Sbjct: 188 CGGPGRGLCFCGKCRCHPGFEGSACQ 213
Score = 42.7 bits (100), Expect = 5e-04
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 18/141 (12%)
Query: 821 CDCNHVGALDNIC----DVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLC 876
C C ++C + G C+C G+ C+ + G + C + ++ +C
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 145
Query: 877 DSKTGTCISCR-NSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQL 935
S G C+ + + + I G Y C C
Sbjct: 146 -SGLGDCVCGQCLCHTSDVPGKLIYGQY--------CECDTINCERYNGQVCGGPGRG-- 194
Query: 936 DPRSQDVICECKEGYRGTRCD 956
C C G+ G+ C
Sbjct: 195 --LCFCGKCRCHPGFEGSACQ 213
Score = 39.6 bits (92), Expect = 0.005
Identities = 27/150 (18%), Positives = 42/150 (28%), Gaps = 14/150 (9%)
Query: 399 EVCLRCDCD-PGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPN 457
+V +C+C S D +C L G C C G+ C+ G ++
Sbjct: 79 QVLPQCECRCRDQSRDRSLCHGKGF--LECGICRCDTGYIGKNCECQTQG-----RSSQE 131
Query: 458 GCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCD 517
C + I S + G C C + + E + C
Sbjct: 132 LEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKL-----IYGQYCECDTINC-ERYNG 185
Query: 518 PGASYDNNCDVISGQCKCKPHASGRTCSTP 547
G+C+C P G C
Sbjct: 186 QVCGGPGRGLCFCGKCRCHPGFEGSACQHH 215
Score = 31.5 bits (71), Expect = 2.2
Identities = 32/165 (19%), Positives = 42/165 (25%), Gaps = 31/165 (18%)
Query: 289 PISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNN--H 346
+ D V +CEC Q + C G C C C+
Sbjct: 69 ALGFTDIVTVQVLPQCECRCRDQSRDRSLC------------HGKGFLECGICRCDTGYI 116
Query: 347 STKCHFDEAVYNSTGRISGGVCDSCEHNTEGR---NCERCKQYFYKDPNKEFS------D 397
C +S D+ G C +C + P K D
Sbjct: 117 GKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECD 176
Query: 398 PEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCD 442
C R + G G+C GKC C P G C
Sbjct: 177 TINCERYNGQVCGGPGRGLC--------FCGKCRCHPGFEGSACQ 213
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 43.0 bits (100), Expect = 6e-04
Identities = 38/238 (15%), Positives = 53/238 (22%), Gaps = 18/238 (7%)
Query: 331 FGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNT------EGRNCERCK 384
T C KC V S VC SC T C C
Sbjct: 16 VDRATGQVLTC------DKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCS 69
Query: 385 QYFYKDPNKEFS-DPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDM 443
Q ++ C C PG + C P+T + G RC
Sbjct: 70 QPCPWPMIEKLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQ 129
Query: 444 CKDGFWNFNETNPNGCEPCT-CNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWG 502
C G ++ ++ C+ T C Q + + K D C P
Sbjct: 130 CARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTK-ETDNVCGTLPSFSSSTSPSPGTAI 188
Query: 503 LSESEEY---GCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYD 557
E P + + + S D
Sbjct: 189 FPRPEHMETHEVPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKED 246
Score = 42.6 bits (99), Expect = 9e-04
Identities = 42/293 (14%), Positives = 63/293 (21%), Gaps = 52/293 (17%)
Query: 893 ENCERCINGYY--GDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGY 950
E + G Y D G + C CP GT S C
Sbjct: 3 EQKASNLIGTYRHVDRATGQVLTCDKCP-AGTYVSE------------------HCTNT- 42
Query: 951 RGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQ 1010
C C F + C C + C LT D
Sbjct: 43 SLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALT------------DREC 90
Query: 1011 VCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKI 1070
C G F Q+ C C G V C +C + +
Sbjct: 91 TCPPGMF-----QSNATCA--------PHTVCPVGWGVRKKGTETEDVRCKQCARGTFSD 137
Query: 1071 ASGTG--CEPC-DCDPIGSVDVTECNEYTG-QCQ-CKSGFGGRQCDQCQTNFWGNPNVEC 1125
+ C+ DC V + + T C S F ++E
Sbjct: 138 VPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMET 197
Query: 1126 FPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGEC 1178
++N + + + +A +
Sbjct: 198 HEVPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKT 250
Score = 37.2 bits (85), Expect = 0.043
Identities = 31/219 (14%), Positives = 50/219 (22%), Gaps = 30/219 (13%)
Query: 800 GRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYW 859
R C C GT+ G + C + C C PG
Sbjct: 44 LRVCSSCPVGTFTRHENGIEKCHDCSQP--CPWPMIEKLPCAALTDR----ECTCPPGM- 96
Query: 860 NYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGID--IPCRPC 917
+ + C + C G + D C++C G + D + C
Sbjct: 97 -FQSNATCAPHTV---CPVGWGVRKKGTETEDVR-CKQCARGTFSDVPSSVMKCKAYTDC 151
Query: 918 PCPGTVE---------------SGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNY 962
V S + + E E +
Sbjct: 152 LSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPR-PEHMETHEVPSSTYVPKGM 210
Query: 963 FGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCR 1001
S P S+ + +P N + GK +
Sbjct: 211 NSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNK 249
Score = 36.1 bits (82), Expect = 0.083
Identities = 37/281 (13%), Positives = 62/281 (22%), Gaps = 27/281 (9%)
Query: 887 RNSTDGENCERCINGYY--GDPRLGIDIPCRPCPCPGTVESGLSYADTCQ----LDPRSQ 940
R + C++C G Y C CP GT + + C P
Sbjct: 18 RATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCP-VGTFTRHENGIEKCHDCSQPCPWPM 76
Query: 941 DVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQC 1000
C R C F + C D +C +
Sbjct: 77 IEKLPCAAL--TDRECTCPPGMFQS-NATCAPHTVCPVGWGVRKKGTETEDVRCKQCARG 133
Query: 1001 RYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTT----GQCPCLPNVI 1056
+ CKA T+C L P + T G P +
Sbjct: 134 TFSDVPSSVMKCKA----------YTDCLSQNL---VVIKPGTKETDNVCGTLPSFSSST 180
Query: 1057 GVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTN 1116
S + + P G + + + + S ++
Sbjct: 181 SPSPGTAIFPRPEHMETHEVPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSS 240
Query: 1117 FWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVR 1157
G +V + H++ + G
Sbjct: 241 ARGKEDVNKTLPNLQVVNHQQGPHHRHILKLLPSMEATGGE 281
Score = 33.8 bits (76), Expect = 0.46
Identities = 41/310 (13%), Positives = 62/310 (20%), Gaps = 52/310 (16%)
Query: 802 RCDRCAPGTYGFGPEGCKACDCNHVGALDNICDV------VSGQCKCRAQTYGRECDQCS 855
+ GTY CD VS C T R C C
Sbjct: 4 QKASNLIGTYRHVDRATGQVLT---------CDKCPAGTYVSEHC---TNTSLRVCSSCP 51
Query: 856 PGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCR 915
G + C+ + C + C TD C G +
Sbjct: 52 VGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTD--RECTCPPGMFQS--------NA 101
Query: 916 PCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEP 975
C G RC C F + C+
Sbjct: 102 TCAPHTVCPVGWGVRKKGT--------------ETEDVRCKQCARGTFSDVPSSVMKCKA 147
Query: 976 CD--CSNNTDLALPGNC--DTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCN 1031
S N + PG D + G T + T
Sbjct: 148 YTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPR-PEHMETHEVPSSTYV 206
Query: 1032 ILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTE 1091
G++ ++ + G D A G + V+ +
Sbjct: 207 PKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSS-----ARGKEDVNKTLPNLQVVNHQQ 261
Query: 1092 CNEYTGQCQC 1101
+ +
Sbjct: 262 GPHHRHILKL 271
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 43.3 bits (101), Expect = 6e-04
Identities = 33/180 (18%), Positives = 49/180 (27%), Gaps = 20/180 (11%)
Query: 1023 QNCTECTCNILGIDHSKGPCDRTT--GQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCD 1080
+ EC G K C++TT + C K A E C
Sbjct: 143 KPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCH 202
Query: 1081 CDPIGSVDVTECNEYTGQCQCKSGFGGRQC-DQCQTNFWGNPNVECFPCD-CDPSGSATS 1138
+ +GS + + T C+ + C C N + C D C SA S
Sbjct: 203 PECLGSC--SAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAES 260
Query: 1139 QCHQN----NGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDSILRGLADQTT 1194
+ +G C+ C G+I C C + T
Sbjct: 261 SDSEGFVIHDGECMQ----------ECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKT 310
Score = 40.2 bits (93), Expect = 0.007
Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 16/187 (8%)
Query: 294 DTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQ----TNACKQCNCNNHSTK 349
KP G + CEK + C + C ++
Sbjct: 141 GNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNEC 200
Query: 350 CHFDEAVYNSTGRISGGVCDSCEHNTEGRNC-ERCKQYFYKDPNKEFSDPEVCLRCD--- 405
CH E + + + + C +C H C C Y+ D + C
Sbjct: 201 CH-PECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAE 259
Query: 406 --CDPGGSLDDGIC-----DPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNG 458
G + DG C + + S C + C+ K + T+
Sbjct: 260 SSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQM 319
Query: 459 CEPCTCN 465
+ CT
Sbjct: 320 LQGCTIF 326
Score = 37.9 bits (87), Expect = 0.035
Identities = 33/247 (13%), Positives = 52/247 (21%), Gaps = 30/247 (12%)
Query: 837 SGQCKCRAQTYGRECDQCSPG-YWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENC 895
+EC PG P C++ N + T C ST
Sbjct: 134 VSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPST----- 188
Query: 896 ERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRC 955
C + C C P + C+ Y C
Sbjct: 189 --CGKRACTENNECCHPECLGS-CSA---------------PDNDTACVACRHYYYAGVC 230
Query: 956 -DGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQC-----RYDTEGDHC 1009
C N + R + C + + + G+C+Q +
Sbjct: 231 VPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMY 290
Query: 1010 QVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWK 1069
+ G E+ T + + C G
Sbjct: 291 CIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASELENFMGL 350
Query: 1070 IASGTGC 1076
I TG
Sbjct: 351 IEVVTGY 357
Score = 37.5 bits (86), Expect = 0.047
Identities = 32/211 (15%), Positives = 57/211 (27%), Gaps = 12/211 (5%)
Query: 958 CLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQ-VCKAGF 1016
LD N + C + C+ T + CQ +C +
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTC 189
Query: 1017 FGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSC-DRCLKNHWKIASGTG 1075
A +N C LG S D T C C C N ++
Sbjct: 190 GKRACTENNECCHPECLG---SCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRC 246
Query: 1076 CEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGS 1135
+ C I S + ++ + G +C + F N + + C+
Sbjct: 247 VDRDFCANILSAESSDSEGF-------VIHDGECMQECPSGFIRNGSQSMYCIPCEGPCP 299
Query: 1136 ATSQCHQNNGTCVCHQGIGGVRCDTCARGYI 1166
+ + T ++ T +G +
Sbjct: 300 KVCEEEKKTKTIDSVTSAQMLQGCTIFKGNL 330
Score = 36.3 bits (83), Expect = 0.083
Identities = 34/223 (15%), Positives = 54/223 (24%), Gaps = 31/223 (13%)
Query: 778 TGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVS 837
++ Y C G P C +C
Sbjct: 132 DAVSNNYIVGNKPPKECGDLCPG--TMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTC 189
Query: 838 GQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENC-E 896
G+ C + C P C C+ D+ T C++CR+ C
Sbjct: 190 GKRACTEN-----NECCH------PECLGS-CSA----PDNDT-ACVACRHYYYAGVCVP 232
Query: 897 RCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVIC--ECKEGY--RG 952
C Y C + LS + D C EC G+ G
Sbjct: 233 ACPPNTYRF-------EGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNG 285
Query: 953 TRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTG 995
++ C+ P+ + + T + C G
Sbjct: 286 SQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKG 328
Score = 36.0 bits (82), Expect = 0.11
Identities = 28/212 (13%), Positives = 48/212 (22%), Gaps = 10/212 (4%)
Query: 765 YVHHGANECDCDPTGSTSKYCDQL------GGNCVCKPNVVGRRCDRCAPGTYGFGPEGC 818
Y+ +C + + + R C
Sbjct: 138 YIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTEN 197
Query: 819 KACDCNHVGALDNICDVVSGQCKCRAQTYGREC-DQCSPGYWNYPTCQRCICNGHADLCD 877
C + D + CR Y C C P + + RC+
Sbjct: 198 NECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEG-WRCVDRDFCANIL 256
Query: 878 SKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDP 937
S + DGE + C +G+ + + C PC P
Sbjct: 257 SAESSDSEGFVIHDGECMQECPSGFIRNG--SQSMYCIPCEGPCPKVCEEEKKTKTIDSV 314
Query: 938 RSQDVICECKEGYRGTRCDGCLDNYFGNPQER 969
S ++ C + N + E
Sbjct: 315 TSAQMLQGCTIFKGNLLINIRRGNNIASELEN 346
Score = 31.3 bits (70), Expect = 3.3
Identities = 32/255 (12%), Positives = 50/255 (19%), Gaps = 27/255 (10%)
Query: 302 GRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTG 361
+ ++ +D ++ + C
Sbjct: 114 EKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCE--------KT 165
Query: 362 RISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYT 421
I+ C + CL P C Y
Sbjct: 166 TINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYY 225
Query: 422 DDVLVSGKC--HCKPN---VGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQG-C 475
G C C PN G RC N + + +G + G C
Sbjct: 226 YA----GVCVPACPPNTYRFEGWRCVDRDFCA--------NILSAESSDSEGFVIHDGEC 273
Query: 476 NKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKC 535
++ + + C C EE K D A C + G
Sbjct: 274 MQECPSGFIRNGSQSMYCIPC-EGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLI 332
Query: 536 KPHASGRTCSTPEQS 550
S E
Sbjct: 333 NIRRGNNIASELENF 347
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.1 bits (98), Expect = 6e-04
Identities = 9/74 (12%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 1422 SESNSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEA--KA 1479
E S + + E +K + E ++ ++ + + ++ + + S+++ K A
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 1480 EEVFRGITTAKQES 1493
++ F + ++
Sbjct: 142 DKAFY----QQPDA 151
Score = 39.0 bits (90), Expect = 0.005
Identities = 12/86 (13%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 1421 LSESNSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAE 1480
+++++ E+ +K +E + + L++ D A + ++AK +
Sbjct: 74 IAQADRLTQEPESIRKW---REEQRKRLQE-----------LDAASKVMEQEWREKAKKD 119
Query: 1481 --EVFRGITTAKQESHAANILAKEAY 1504
E + + +++ N +A +A+
Sbjct: 120 LEEWNQRQSEQVEKNKINNRIADKAF 145
Score = 34.0 bits (77), Expect = 0.24
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 14/94 (14%)
Query: 1548 LAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGAD 1607
+A + PE IR+ E K L ++D A + + KA K +
Sbjct: 74 IAQADRLTQEPESIRKWREEQR---KRLQELD------AASKVMEQEWREKAK--KDLEE 122
Query: 1608 STKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDI 1641
+ +++ R A + Q DI
Sbjct: 123 WNQRQSEQVEKNKINNRIAD---KAFYQQPDADI 153
Score = 34.0 bits (77), Expect = 0.25
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 17/76 (22%)
Query: 1277 ARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEK 1336
RL D ++ + + +E A + ++E E ++ + K K + +K
Sbjct: 96 KRLQELDAASKVME-----QEWREKA----KKDLE---EWNQRQSEQVEKNKINNRIADK 143
Query: 1337 QINDAERQCKRTENLV 1352
+ +++
Sbjct: 144 -----AFYQQPDADII 154
Score = 32.4 bits (73), Expect = 0.78
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 40/117 (34%)
Query: 1658 AQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSR 1717
A + + E K +E+ K +Q E + + E +K L
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQ-------------ELDAASKVMEQEWREKAKKDLEEW 123
Query: 1718 YQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESEL 1774
Q + + K + + N+ + +A + ++++
Sbjct: 124 NQRQSEQ-VEKNKIN-----------NRIAD---------------KAFYQQPDADI 153
Score = 32.1 bits (72), Expect = 1.2
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 1326 KLKEQSTETEKQI--NDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKN 1383
+++ E K++ DA + E + +++ E+ QR +E++ EKN
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWR--------EKAKKDLEEWNQRQSEQV---EKN 134
Score = 29.7 bits (66), Expect = 6.0
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 1618 DVLTEARTAQDMAEVAIQTAKDDISAARKD--LSQITNDLDDAQQKSNETNVKVKLLQER 1675
+ + + R Q + D S + + DL++ Q+ +E K K
Sbjct: 85 ESIRKWREEQR-KRLQ---ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK---IN 137
Query: 1676 LKSIQAGFLQN 1686
+ F Q
Sbjct: 138 NRIADKAFYQQ 148
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Length = 501
Score = 43.4 bits (101), Expect = 6e-04
Identities = 28/199 (14%), Positives = 46/199 (23%), Gaps = 12/199 (6%)
Query: 978 CSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDH 1037
S++ + + G C +C C G Q T+ C
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGA-----GEENCQKLTKIICAQQCSGR 198
Query: 1038 SKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTG 1097
+G C G CL T + C P + +
Sbjct: 199 CRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTC---PPLMLYNPTTYQMDV 255
Query: 1098 QCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDP----SGSATSQCHQNNGTCVCHQGI 1153
+ K FG +C N+ + C +C + G C
Sbjct: 256 NPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNG 315
Query: 1154 GGVRCDTCARGYIGTAPDC 1172
G+ + T
Sbjct: 316 IGIGEFKDSLSINATNIKH 334
Score = 38.4 bits (88), Expect = 0.024
Identities = 22/200 (11%), Positives = 48/200 (24%), Gaps = 21/200 (10%)
Query: 298 DMVHGRCECTH----NTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFD 353
D+V +C+KC + A + C +
Sbjct: 142 DIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRG 201
Query: 354 EAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKD------PNKEFSDPEVCLRCDCD 407
++ + C + +C C+++ + P +P + D +
Sbjct: 202 KSPSDCCHNQCAAGCTGPRES----DCLVCRKFRDEATCKDTCPPLMLYNPT-TYQMDVN 256
Query: 408 PGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQ 467
P G + + + G C + E C+ C +
Sbjct: 257 PEG------KYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCR 310
Query: 468 GTINSQGCNKDTGDCTCKRN 487
N G + +
Sbjct: 311 KVCNGIGIGEFKDSLSINAT 330
Score = 37.2 bits (85), Expect = 0.048
Identities = 29/219 (13%), Positives = 52/219 (23%), Gaps = 29/219 (13%)
Query: 928 SYADTCQLDPRSQDVIC-ECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLAL 986
+ +D ++ C +C C G G + + C +
Sbjct: 147 DFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGA-----GEENCQKLTKIICAQQCSGRCRG 201
Query: 987 PGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTT 1046
D +C C VC+ + C + TT
Sbjct: 202 KSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLML-----------YNPTT 250
Query: 1047 GQCPCLPNVI----GVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCK 1102
Q P +C +N+ G+ C D + E G +CK
Sbjct: 251 YQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGAD-------SYEMEEDGVRKCK 303
Query: 1103 SGFGGR-QCDQCQTNFWGNPNVECFPCDCDPSGSATSQC 1140
G + ++ + + TS
Sbjct: 304 KCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 35.3 bits (80), Expect = 0.21
Identities = 16/210 (7%), Positives = 36/210 (17%), Gaps = 19/210 (9%)
Query: 764 MYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDC 823
M + + C + G + C + G
Sbjct: 152 MSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCR--------GKS 203
Query: 824 NHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTC 883
+ +G + +C C C + +
Sbjct: 204 PSDCCHNQCAAGCTGPRE-------SDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVN 256
Query: 884 ISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVI 943
+ S ++C Y + C + E C+ +
Sbjct: 257 PEGKYSFGATCVKKCPRNYV----VTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKV 312
Query: 944 CECKEGYRGTRCDGCLDNYFGNPQERGGSC 973
C + +
Sbjct: 313 CNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 34.9 bits (79), Expect = 0.30
Identities = 13/124 (10%), Positives = 24/124 (19%), Gaps = 3/124 (2%)
Query: 277 SCSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTN 336
C + + C + + + + C+ GS
Sbjct: 226 VCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVR 285
Query: 337 AC---KQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNK 393
AC + KC E G + N + K +
Sbjct: 286 ACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDL 345
Query: 394 EFSD 397
Sbjct: 346 HILP 349
Score = 31.8 bits (71), Expect = 2.1
Identities = 32/213 (15%), Positives = 47/213 (22%), Gaps = 12/213 (5%)
Query: 834 DVVSGQCKCR-AQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCI---SCRNS 889
D+VS + + C P+C C G + K I C
Sbjct: 142 DIVSSDFLSNMSMDFQNHLGSCQK---CDPSCPNGSCWGAGEENCQKLTKIICAQQCSGR 198
Query: 890 TDGENCERCINGYYGDPRLGID----IPCRPCPCPGTVESGLSYADTCQLDPRSQDVICE 945
G++ C + G + CR T + DV E
Sbjct: 199 CRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPE 258
Query: 946 CKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTE 1005
K + T C NY D + C G C +
Sbjct: 259 GKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEE-DGVRKCKKCEGPCRKVCNGIG 317
Query: 1006 GDHCQVCKAGFFGNALEQNCTECTCNILGIDHS 1038
+ + N L I
Sbjct: 318 IGEFKDSLSINATNIKHFKNCTSISGDLHILPV 350
Score = 31.4 bits (70), Expect = 2.9
Identities = 20/205 (9%), Positives = 38/205 (18%), Gaps = 16/205 (7%)
Query: 377 GRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNV 436
F C C G + SG+C +
Sbjct: 146 SDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRG-KSP 204
Query: 437 GGRRCDMCKDGFWNFNETNPNGCEPCTCNIQ-------GTINSQGCNKDTGDCTCKRNVE 489
+ C G E++ C + + + + K +
Sbjct: 205 SDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFG 264
Query: 490 GRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPHASGRTCSTPEQ 549
+C ++ C C + G KCK
Sbjct: 265 ATCVKKCPRNYVVTDHGS---CVRA-CGADSYEMEE----DGVRKCKKCEGPCRKVCNGI 316
Query: 550 SYYSPPYDNFLYEAENANCKTDKCV 574
+ + K +
Sbjct: 317 GIGEFKDSLSINATNIKHFKNCTSI 341
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 40.3 bits (94), Expect = 0.001
Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 1281 LNDLTEEIKKLNKT--------GEMLKENATLLQENN-----VEGALELTRQAHDTSLKL 1327
+ + EE +L + E+ ++ +LLQE N V+ + A + +L
Sbjct: 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74
Query: 1328 KEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNL 1384
+ + E ++ + ++ + E + + T + + E L I LE L
Sbjct: 75 IKNKIQLEAKVKEMNKRLEDEEEMNA----ELTAKKRKLEDECSELKRDIDDLELTL 127
Score = 38.3 bits (89), Expect = 0.004
Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 17/134 (12%)
Query: 1214 KEFELLEKKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQR 1273
KE ++++ +K +E + +L + ++ K + +
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDL----------------QLQ 56
Query: 1274 INLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTE 1333
+ + L D E +L K L+ + + +E E+ + KL+++ +E
Sbjct: 57 VQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKR-LEDEEEMNAELTAKKRKLEDECSE 115
Query: 1334 TEKQINDAERQCKR 1347
++ I+D E +
Sbjct: 116 LKRDIDDLELTLAK 129
Score = 34.9 bits (80), Expect = 0.061
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%)
Query: 1661 KSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQE 1720
KS E ++ ++E ++ + E K LE+++ ++ + L+ + Q
Sbjct: 7 KSAEREKEMASMKEEFTRLKEALEK-------SEARRKELEEKMVSLLQEKNDLQLQVQA 59
Query: 1721 TDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKN 1780
+ L E L K +++ + + E A E E +EL ++
Sbjct: 60 EQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119
Query: 1781 IAELQKRIQ 1789
I +L+ +
Sbjct: 120 IDDLELTLA 128
Score = 30.2 bits (68), Expect = 2.5
Identities = 10/98 (10%), Positives = 41/98 (41%)
Query: 1613 VQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLL 1672
++ + L ++ + E + + + + + + ++L DA+++ ++ L
Sbjct: 22 FTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQL 81
Query: 1673 QERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQ 1710
+ ++K + ++ +++ LE E + ++
Sbjct: 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE;
2.33A {Homo sapiens}
Length = 168
Score = 40.5 bits (94), Expect = 0.001
Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 11/117 (9%)
Query: 1281 LNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQIND 1340
L ++ +L K+ + ++ + L+ N E E R ++ + + + + +
Sbjct: 22 LRTESDTAVRLRKSHTEMSKSISQLESLNRE-LQERNRILENSKSQTDKDYYQLQAILEA 80
Query: 1341 AERQCKRTENLVTKTFPQFTQGQEEN----------EKALQRLNEKITSLEKNLPDL 1387
R ++ + T QEE E + + + EK +L
Sbjct: 81 ERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137
Score = 40.1 bits (93), Expect = 0.002
Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 7/147 (4%)
Query: 1591 KANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQ 1650
K + L+++ + +T ++ TE + E + ++ SQ
Sbjct: 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQ 66
Query: 1651 ITNDLDDAQQK-------SNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKE 1703
D Q + + LQ R+ S+Q + VE E K +
Sbjct: 67 TDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM 126
Query: 1704 VALAQKQASGLRSRYQETDNKLLSKAE 1730
+ ++K+ + L L + E
Sbjct: 127 LNHSEKEKNNLEIDLNYKLKSLQQRLE 153
Score = 36.2 bits (83), Expect = 0.036
Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 14/150 (9%)
Query: 1641 ISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNL 1700
+ A L ++ ++ E + + L+ + +Q +EN +
Sbjct: 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQ-------ERNRILENSKSQT 67
Query: 1701 EKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQL 1760
+K+ Q R + +AR L + L N +
Sbjct: 68 DKDYYQLQAILEAERRDRGHDSEMIGD-------LQARITSLQEEVKHLKHNLEKVEGER 120
Query: 1761 NETEAMFNSQESELTELSKNIAELQKRIQS 1790
E + M N E E L ++ K +Q
Sbjct: 121 KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQ 150
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia
coli} SCOP: a.8.7.1
Length = 213
Score = 40.5 bits (94), Expect = 0.002
Identities = 24/176 (13%), Positives = 62/176 (35%), Gaps = 21/176 (11%)
Query: 1616 IVDVLTEARTAQDMAEVA--IQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQ 1673
+ + + + + ++A ++ K + + + + TN L
Sbjct: 4 VSNPTELIKQGEQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLLGTSTNTLANNLP 63
Query: 1674 ERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSG 1733
+ K + + + + S S + E D+ S+A +
Sbjct: 64 DNWKEVYSDAMNSSSSVT----------------PSVNSMMGQFNAEVDDMTPSEAIAYM 107
Query: 1734 LKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQ 1789
K+ + ++ ++L++ +A+ +++ + T K+IA+LQ RIQ
Sbjct: 108 NKKLAEKGAYDRVMAEKAYNNQM-QELSDMQAL--TEQIKSTPDLKSIADLQARIQ 160
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 41.1 bits (97), Expect = 0.002
Identities = 38/293 (12%), Positives = 88/293 (30%), Gaps = 51/293 (17%)
Query: 1424 SNSAKDYAETSKKL---INEKESKAEELRKHMIILSE-SNSAKDYAETSKKLINEKEAKA 1479
AE+ +++ E ++ + K M +S S + + E +
Sbjct: 8 QTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSAT 67
Query: 1480 EEVFRGITTAKQESHAANILAKE---AYDHAASVRNKTAAYVASTSNITKQLDEFLNAPG 1536
+ + A + + LAKE A V + + + +
Sbjct: 68 KNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGAEEIT 127
Query: 1537 ATLADIRNISG----LAVNKNI------------------------QSNPEQIRERANEI 1568
+ + I I+ LA+N I +S + + +
Sbjct: 128 SFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQ-----QASENV 182
Query: 1569 NNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQD 1628
V+ I + ++++ + AD + IV + +
Sbjct: 183 RRVVNE------IRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVER--INEM 234
Query: 1629 MAEVAIQTAKDDISAARKDLSQITNDLDD-AQQKSNETNVKVKLLQERLKSIQ 1680
+ +A A ++ +AA +++ + A++ +N LQE S +
Sbjct: 235 LQNIA--AAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTE 285
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine,
axial stagger, radius, SIDE-chain packing, crystal
packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 39.3 bits (91), Expect = 0.003
Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 4/134 (2%)
Query: 1575 LTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVL-TEARTAQDMAEVA 1633
L L L +A ++ +S ++ +++ + + A+ +AE A
Sbjct: 12 LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 71
Query: 1634 IQTAKD---DISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSA 1690
+ ++ + DL + + ++ K E ++K + LKS++ +
Sbjct: 72 DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKN 131
Query: 1691 MDVENEEKNLEKEV 1704
+ENE L+K V
Sbjct: 132 YHLENEVARLKKLV 145
Score = 37.4 bits (86), Expect = 0.013
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 13/147 (8%)
Query: 1646 KDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVA 1705
++L + L A QK E + +K I++ A E + + E ++
Sbjct: 10 EELDRAQERLATALQKLEEAEKAADESERGMKVIES-------RAQKDEEKMEIQEIQLK 62
Query: 1706 LAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLS---VNTTAKLKQLNE 1762
A+ A +Y+E KL+ R ++ K ++L T LK L +
Sbjct: 63 EAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122
Query: 1763 TEAMFNSQESELTELSKNIAELQKRIQ 1789
S+ L +A L+K +
Sbjct: 123 KVEELLSKNYHLEN---EVARLKKLVG 146
Score = 37.0 bits (85), Expect = 0.014
Identities = 14/123 (11%), Positives = 44/123 (35%), Gaps = 7/123 (5%)
Query: 1559 EQIRERANEINNVIKSL----TDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQ 1614
E+ + A+E +K + + + L +A + A+ ++
Sbjct: 27 EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIE 86
Query: 1615 KIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQE 1674
L A +++E ++++ +L + + +++ K+ +V L++
Sbjct: 87 ---SDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKK 143
Query: 1675 RLK 1677
+
Sbjct: 144 LVG 146
Score = 35.0 bits (80), Expect = 0.081
Identities = 20/141 (14%), Positives = 49/141 (34%), Gaps = 21/141 (14%)
Query: 1645 RKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEV 1704
+ + + +LD AQ++ K++ ++ A + E K +E
Sbjct: 2 NRRIQLVEEELDRAQERLATALQKLEEAEKA--------------ADESERGMKVIESRA 47
Query: 1705 ALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETE 1764
+++ + +E + A+ + AR K + + ++ +E
Sbjct: 48 QKDEEKMEIQEIQLKEA-KHIAEDADRKYEEVAR------KLVIIESDLERAEERAELSE 100
Query: 1765 AMFNSQESELTELSKNIAELQ 1785
E EL ++ N+ L+
Sbjct: 101 GKCAELEEELKTVTNNLKSLE 121
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 41.6 bits (98), Expect = 0.003
Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 16/167 (9%)
Query: 1219 LEKKIEDVKALVENTTRSSHDLTV----MLTTIDDMKKQIMNNEDPNGVGKTLGNTTQRI 1274
LE KI ++ ++ + L + T +++ ++ + L + +
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE------RLRMSEEEA 979
Query: 1275 NLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTET 1334
A + L EEI KL K + ++E + + +LKEQ+T
Sbjct: 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD----KYKHETEQLVSELKEQNTLL 1035
Query: 1335 EKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLE 1381
+ + + R+ +T+T + + EE ++ LN++ +
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEK--KLVEETKQLELDLNDERLRYQ 1080
Score = 38.9 bits (91), Expect = 0.019
Identities = 40/259 (15%), Positives = 76/259 (29%), Gaps = 53/259 (20%)
Query: 1272 QRINLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQS 1331
Q + A +AL L NK ML+E+ +++ + +V G L + Q
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895
Query: 1332 TETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNELI 1391
A+R+ K+ + E +K L KI L++ + + N+
Sbjct: 896 CYRRMM---AKRELKKLKIEARSV--------ERYKKLHIGLENKIMQLQRKIDEQNK-- 942
Query: 1392 CDKRGDPCDNLCGGAGCGKCGGMWCSNGTLSESNSAKDYAETSKKLINEKESKAEELRKH 1451
K E L ++ E+LR
Sbjct: 943 ----------------------------------EYKSLLEKMNNLEITYSTETEKLRSD 968
Query: 1452 MIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQESHAANILAKEAYDHAASVR 1511
+ L S A + E+ AK + T K+ + + A +
Sbjct: 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT------IEEWADKYKHETE 1022
Query: 1512 NKTAAYVASTSNITKQLDE 1530
+ + + + +E
Sbjct: 1023 QLVSELKEQNTLLKTEKEE 1041
Score = 31.2 bits (71), Expect = 4.4
Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 19/153 (12%)
Query: 1431 AETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAK 1490
E KKL E+K +L++ + ++ K E L + E++ +
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEY--KSLLEKMNNLEITYSTETEKL-------R 966
Query: 1491 QESHAANILAKEAYDHAASVRNKTAAYVASTSNIT------KQLDEFLNAPGATLADIRN 1544
+ + +EA + V + + K ++E+ + + +
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 1545 ISGLAVNKNIQSNPEQIRERANEINNVIKSLTD 1577
+ + + E I++ K +T+
Sbjct: 1027 ----ELKEQNTLLKTEKEELNRRIHDQAKEITE 1055
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 38.9 bits (91), Expect = 0.003
Identities = 18/91 (19%), Positives = 25/91 (27%), Gaps = 23/91 (25%)
Query: 1087 VDVTECNEYTGQCQCKSGFGGRQC----DQCQTNFWGNPNVECFPCDCDPSGSATSQCHQ 1142
+ ++ C+C GF C + C P C
Sbjct: 15 LPGLADGSFS--CECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC-----------H 61
Query: 1143 NNGTCVCHQ-----GIGGVRCDTCARGYIGT 1168
N GTC + G C C RG+ G
Sbjct: 62 NGGTCEISEAYRGDTFIGYVC-KCPRGFNGI 91
Score = 33.9 bits (78), Expect = 0.15
Identities = 25/131 (19%), Positives = 32/131 (24%), Gaps = 39/131 (29%)
Query: 1048 QCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCD---------CDPIGSVDVTECNEYTGQ 1098
C C +C ++ T PC C+ + Y
Sbjct: 24 SCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYV-- 81
Query: 1099 CQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCV---------C 1149
C+C GF G C N N EC C +N G C C
Sbjct: 82 CKCPRGFNGIHCQH-------NIN-ECEVEPC-----------KNGGICTDLVANYSCEC 122
Query: 1150 HQGIGGVRCDT 1160
G C
Sbjct: 123 PGEFMGRNCQY 133
Score = 33.9 bits (78), Expect = 0.17
Identities = 29/149 (19%), Positives = 40/149 (26%), Gaps = 32/149 (21%)
Query: 932 TCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGS-CEPCDCSNNTDLALPGNC 990
C CEC +G+ C ++ + C P C N G C
Sbjct: 13 ICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNG------GTC 66
Query: 991 DTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPC-------D 1043
+ DT + C GF G + N EC PC D
Sbjct: 67 EISEAYR----GDTFIGYVCKCPRGFNGIHCQHNINECEVE---------PCKNGGICTD 113
Query: 1044 RTTG-QCPCLPNVIGVSC----DRCLKNH 1067
C C +G +C +H
Sbjct: 114 LVANYSCECPGEFMGRNCQYKGGGHHHHH 142
Score = 32.8 bits (75), Expect = 0.43
Identities = 29/156 (18%), Positives = 43/156 (27%), Gaps = 44/156 (28%)
Query: 882 TCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQD 941
+C C + NC + + PC P PC TC++ +
Sbjct: 24 SC-ECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC--------HNGGTCEISEAYRG 74
Query: 942 V-----ICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGK 996
+C+C G+ G C N E CE C N G C
Sbjct: 75 DTFIGYVCKCPRGFNGIHCQ-------HNINE----CEVEPCKNG------GIC------ 111
Query: 997 CLQCRYDTEGD-HCQVCKAGFFGNALEQNCTECTCN 1031
D + C+ C F G + +
Sbjct: 112 -----TDLVANYSCE-CPGEFMGRNCQYKGGGHHHH 141
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 41.3 bits (94), Expect = 0.003
Identities = 51/429 (11%), Positives = 99/429 (23%), Gaps = 33/429 (7%)
Query: 767 HHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHV 826
G + +C + ++ R A G + C AC +
Sbjct: 127 KTGPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQKNCGACHHVYD 186
Query: 827 GALDNICDVVSGQCKCRAQTYGRECDQC-SPGYWNYPTCQRCICNGHADLCDSKTGTCIS 885
A + + + CRA + D+ + + C C + ++ C
Sbjct: 187 EASKKLVWGKNKEDSCRACHGEKPVDKRPALDTAAHTACISCHMDVAKTKAETGPVNCAG 246
Query: 886 C---RNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDV 942
C + G P + +P P ++ + ++
Sbjct: 247 CHAPEAQAKFKVVREVPRLDRGQPDAALILPVPGKDAPREMKGTMKPVAFDHKAHEAKAN 306
Query: 943 ICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQC-R 1001
C R C C + + ++ C+ C
Sbjct: 307 DCRTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRS------------CVGCHN 354
Query: 1002 YDTEGDHCQVCKAGFFGNALEQNCTEC---TCNILGIDHSKGPCDRTTGQCPCLPNVIGV 1058
+ C C + C C G + +
Sbjct: 355 TRVQQPTCAGCHGFIKPTKSDAQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASML 414
Query: 1059 SCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFW 1118
S K + + + +E+ + K+ G D+ F
Sbjct: 415 SARPQPKGTFDLNDIPEKVVIGSI----AKEYQPSEFPHRKIVKTLIAGIGEDKLAATFH 470
Query: 1119 GNPNVECFPCDCDPSGSATSQ----CHQ-----NNGTCVCHQGIGGVRCDTCARGYIGTA 1169
C C + S T CH + G + +C C
Sbjct: 471 IEKGTLCQGCHHNSPASLTPPKCASCHGKPFDADRGDRPGLKAAYHQQCMGCHDRMKIEK 530
Query: 1170 PDCSPCGEC 1178
P + C +C
Sbjct: 531 PANTACVDC 539
Score = 34.0 bits (75), Expect = 0.54
Identities = 35/273 (12%), Positives = 58/273 (21%), Gaps = 25/273 (9%)
Query: 763 GMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACD 822
G K + C C + + C AC
Sbjct: 268 GQPDAALILPVPGKDAPREMKGTMKPVAFDHKAHEAKANDCRTC----HHVRIDTCTAC- 322
Query: 823 CNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKT-G 881
H V + R C C PTC C H + +K+
Sbjct: 323 --HTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGC----HGFIKPTKSDA 376
Query: 882 TCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQD 941
C C + G + ++ G + + ++ S +
Sbjct: 377 QCGVCHVAAPGFDAKQVEAGALLN-----LKAEQRSQVAASMLSARPQPKGTFDLNDIPE 431
Query: 942 VICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNC------DTLTG 995
+ + G + + L C
Sbjct: 432 KVVIGSIAKEYQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTPP 491
Query: 996 KCLQCRYDTEGDHCQVCKAGFFGNALEQNCTEC 1028
KC C + D + + G A Q C C
Sbjct: 492 KCASC-HGKPFDADRGDRPGLKA-AYHQQCMGC 522
Score = 31.3 bits (68), Expect = 3.2
Identities = 26/220 (11%), Positives = 53/220 (24%), Gaps = 9/220 (4%)
Query: 278 CSCYGHASRCLPISEADTKPDMVHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFG-SQTN 336
+S + V + NC C Y++ K +G ++ +
Sbjct: 141 PKPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEASKKLVWGKNKED 200
Query: 337 ACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFS 396
+C+ C+ K + ++ + T NC C + K
Sbjct: 201 SCRACHGEKPVDKRPALDTAAHTACISCHMDVAKTKAETGPVNCAGCHAPEAQAKFKVVR 260
Query: 397 DPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNP 456
+ R D L D + + + C+ +
Sbjct: 261 EVPRLDRGQPDAALILPVPGKDAPREMKGTMKPVAFDHKAHEAKANDCRT----CHHVRI 316
Query: 457 NGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQC 496
+ C C + + + R C C
Sbjct: 317 DTCTAC----HTVNGTADSKFVQLEKAMHQPDSMRSCVGC 352
Score = 30.1 bits (65), Expect = 8.5
Identities = 34/371 (9%), Positives = 61/371 (16%), Gaps = 35/371 (9%)
Query: 872 HADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPC--------PCPGTV 923
H C +C S DG+ + + +I C
Sbjct: 69 HTTAVTGMGKDCAACHKSKDGKMSLKFMRLDDNSAAELKEIYHANCIGCHTDLAKAGKKT 128
Query: 924 ESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTD 983
+C S + + + +C C +
Sbjct: 129 GPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEA 188
Query: 984 LALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALE--------------QNCTEC- 1028
C C + D + NC C
Sbjct: 189 SKKLVWGKNKEDSCRACHGEKPVDKRPALDTAAHTACISCHMDVAKTKAETGPVNCAGCH 248
Query: 1029 -TCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSV 1087
+ GQ + D + +
Sbjct: 249 APEAQAKFKVVREVPRLDRGQPDAALILPVPGKDAPREMKGTMKPVAFDHKAHEAKANDC 308
Query: 1088 DVTECNEYTGQCQCKSGFGGRQCD---QCQTNFWGNPNVECFPC-DCDPSGSATSQCHQN 1143
C + G + + C C + + CH
Sbjct: 309 RTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHGF 368
Query: 1144 ------NGTCV-CHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDSILRGLADQTTKV 1196
+ C CH G G + + +
Sbjct: 369 IKPTKSDAQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLND 428
Query: 1197 ITDASNIKQTG 1207
I + I
Sbjct: 429 IPEKVVIGSIA 439
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site,
IBS2, cell membrane, cell projection, cytoplasm,
cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Length = 332
Score = 40.2 bits (93), Expect = 0.004
Identities = 34/232 (14%), Positives = 67/232 (28%), Gaps = 31/232 (13%)
Query: 1425 NSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFR 1484
N+ KD A+ LI+ ++ A ++ + NSAK L+ +A +E +
Sbjct: 121 NAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSLLKTVKAVEDEATK 180
Query: 1485 GITTAKQESHAANILAKEAYDHAASVRNKTAA-YVASTSNITKQLDEFLNAPGATLADIR 1543
G + + + T ++ T IT +
Sbjct: 181 GTRALEATTEHIRQELAVFCSPEPPAKTSTPEDFIRMTKGITMATAK------------- 227
Query: 1544 NISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTK 1603
AV E + AN I + E A A D++ +A
Sbjct: 228 -----AVAAGNSCRQEDVIATANLSRRAIADMLR---ACKEAAFHPEVAPDVRLRA---- 275
Query: 1604 AGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDL 1655
+ +++L + K ++ K ++ +L
Sbjct: 276 --LHYGRECANGYLELLDH---VLLTLQKPNPDLKQQLTGHSKRVAGSVTEL 322
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A
{Saccharomyces cerevisiae} SCOP: a.47.2.1
Length = 196
Score = 39.3 bits (91), Expect = 0.004
Identities = 22/177 (12%), Positives = 57/177 (32%), Gaps = 13/177 (7%)
Query: 1230 VENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKT---LGNTTQRINLARLALNDLTE 1286
+ R + +D + K+++ + L N + + L + +
Sbjct: 11 ISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIK 70
Query: 1287 EIKKLNKTGEMLKENATLLQENNVE--GALELTRQAHDTSLK--LKEQSTETEKQINDAE 1342
++ + A ++ ++ + + K K Q + + + E
Sbjct: 71 SAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDE 130
Query: 1343 RQCKRTENLVTKTFPQFTQGQEENEKALQRLNE------KITSLEKNLPDLNELICD 1393
+ ++ + F Q +A L E ++ LEK++ +L +L D
Sbjct: 131 VEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFND 187
Score = 36.2 bits (83), Expect = 0.057
Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 29/175 (16%)
Query: 1639 DDISAARKDLSQITNDLDDAQQK-----SNETNVKVKLLQERLKSIQAGFLQNGRSAMDV 1693
+ IS +DL + + ++ + + L+ L + A +
Sbjct: 9 NKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNE 68
Query: 1694 ENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQM------------ 1741
+ Q QA R R+ + +S+ + + Q
Sbjct: 69 IKSAQRDGIHDTNKQAQAENSRQRFLKLIQDY-RIVDSNYKEENKEQAKRQYMIIQPEAT 127
Query: 1742 ------LLNKASQLSVNTTAKLKQLNETEAMFNSQE-----SELTELSKNIAELQ 1785
++ + + A L EA E EL +L K++AEL
Sbjct: 128 EDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELT 182
Score = 32.3 bits (73), Expect = 0.80
Identities = 13/175 (7%), Positives = 53/175 (30%), Gaps = 23/175 (13%)
Query: 1435 KKLINEKESKAEELRK-HMIILSESNSAKDYAETSK--KLINEKEAKAEEVFRGITTAKQ 1491
+ +++ + ++ H +L+E N + + + ++ I +A++
Sbjct: 15 NRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQR 74
Query: 1492 ESHAANI--------------------LAKEAYDHAASVRNKTAAYVASTSNITKQLDEF 1531
+ + Y + K + +++
Sbjct: 75 DGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAA 134
Query: 1532 LNAPGATLADIRNISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETA 1586
++ G + + ++ +++ R E+ + KS+ ++ + +
Sbjct: 135 ISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDME 189
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 40.9 bits (95), Expect = 0.004
Identities = 52/405 (12%), Positives = 87/405 (21%), Gaps = 76/405 (18%)
Query: 818 CKACDCNHVGALDNICDVVSGQCKCRAQT-YGRECD-QCSPGYWNYPTCQRCICNGHADL 875
C+ C +G N G+ K G + C GY L
Sbjct: 190 CEEARCKSLGRFPN------GKVKEPPILRVGVTANFFCDEGY---------------RL 228
Query: 876 CDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQL 935
+ C+ C CP P + +G ++
Sbjct: 229 QGPPSSRCVIAGQGVAWTKMPVCE--------------EIFCPSPPPILNGRHIGNSLAN 274
Query: 936 DPRSQDVICECKEGYRG--------------TRCDGCLDNYFGNPQERGGSCEPCDCS-- 979
V C T + G S C
Sbjct: 275 VSYGSIVTYTCDPDPEEGVNFILIGESTLRCTVDSQKTGTWSGPAPRCELSTSAVQCPHP 334
Query: 980 ---NNTDLALPGNCDTLTGKC-LQCR--YDTEGDHCQVCKAGFFGNALEQNCTECTCNIL 1033
++ + T C + +G C A C +
Sbjct: 335 QILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIRCNAQGTWEPSAPVCEKECQAPP 394
Query: 1034 GIDHSKGPCDR-------TTGQCPCLPN--VIGVSCDRCLKNHWKIASGTGCEPCDCDPI 1084
I + + T+ + C P ++G +C C+ C+
Sbjct: 395 NILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPPVPQCKVAACEAT 454
Query: 1085 GSVDVTECNEY----TGQCQCKSGF---GGRQCDQCQTNFWGNPNVECFPCDCDPSGSAT 1137
G +T+ C G+ G + T W C C P
Sbjct: 455 GRQLLTKPQHQFVRPDVNSSCGEGYKLSGSVYQECQGTIPWFMEIRLCKEITCPPPPVIY 514
Query: 1138 SQCHQNNGTCVCHQG-IGGVRCDTCARGYIGTAPDCSPCGECFDN 1181
+ H + G C+ + + C N
Sbjct: 515 NGAHTGSSLEDFPYGTTVTYTCNPGPERGVEFSLIGESTIRCTSN 559
Score = 38.6 bits (89), Expect = 0.026
Identities = 62/478 (12%), Positives = 105/478 (21%), Gaps = 77/478 (16%)
Query: 755 CKKQHYSIGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFG 814
C ++ G + C + G C+ + +C
Sbjct: 285 CDPDPEEGVNFILIGESTLRCTVDSQKTGTWS--GPAPRCELSTSAVQCPHPQI------ 336
Query: 815 PEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSP-GYWNYPTCQRCICNGHA 873
G + D V C G + +C+ G W
Sbjct: 337 LRGRMVSGQKDRYTYN---DTVIFACMFGFTLKGSKQIRCNAQGTWEPSAPVCEKECQAP 393
Query: 874 DLCDSKTGTCISCRNSTDGENCE-RCINGYY--GDPRL---------GIDIPCRPCPCPG 921
+ G + + C GY G+ + C+ C
Sbjct: 394 PNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPPVPQCKVAACEA 453
Query: 922 TVESGLSYADTCQLDPRSQDVICECKEGYR--GTRCDGCLDNYFGNPQ----ERGGSCEP 975
T L+ + P V C EGY+ G+ C + + P
Sbjct: 454 TGRQLLTKPQHQFVRPD---VNSSCGEGYKLSGSVYQECQGTIPWFMEIRLCKEITCPPP 510
Query: 976 CDCSNNTDLALPGN----CDTLTGKC-----LQCRYDTEGDHCQVCKAGFFGNAL----- 1021
N T+T C + G+ C +
Sbjct: 511 PVIYNGAHTGSSLEDFPYGTTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGTWSGPA 570
Query: 1022 ---EQNCTECTCNILGIDHSKGPCDR-------TTGQCPCLPN--VIGVSCDRCLKNHWK 1069
+ + C+ + I + + T C + G S RC ++
Sbjct: 571 PLCKLSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKADNTW 630
Query: 1070 IASGTGCEPCDCDPIGSVDVTECNEYTG---QCQCKSGF-----GGRQCDQCQTNFWGNP 1121
CE C + C+ G+ + C + W
Sbjct: 631 DPEIPVCEKETCQHVRQSLQELPAGSRVELVNTSCQDGYQLTGHAYQMCQDAENGIWFKK 690
Query: 1122 NVECFPCDCDPSGSATSQCHQNNGTCVCHQGIG---GVRCD-TCARGYIGTAPDCSPC 1175
C C P NG G C +G+ C
Sbjct: 691 IPLCKVIHCHP------PPVIVNGKHTGMMAENFLYGNEVSYECDQGFYLLGEKKLQC 742
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 40.8 bits (94), Expect = 0.005
Identities = 24/159 (15%), Positives = 41/159 (25%), Gaps = 17/159 (10%)
Query: 1074 TGCEPCD--CDPIGSVDVTECNEYTGQCQ------CKSGFGGRQCDQCQTNF------WG 1119
C P + C + + + + + + Q W
Sbjct: 468 RDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWA 527
Query: 1120 NPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECF 1179
NV C S +C G+CVC + GG+ CD D
Sbjct: 528 IDNVYI-GDGCLDMCSGHGRCV--QGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSN 584
Query: 1180 DNWDSILRGLADQTTKVITDASNIKQTGASGAYTKEFEL 1218
NW ++ G + + +G +L
Sbjct: 585 QNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDL 623
Score = 35.0 bits (79), Expect = 0.26
Identities = 31/193 (16%), Positives = 45/193 (23%), Gaps = 20/193 (10%)
Query: 304 CECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRI 363
C T + + E +D L W P C+ + + +N RI
Sbjct: 442 CSVTDSCYAIELEYSVD--LGLSWHPLVRDCLPT--NVECSRYHLQRILVSDTFNKWTRI 497
Query: 364 SGGVCDSCE-HNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTD 422
+ + T R F K + + C G G C
Sbjct: 498 TLPLPSYTRSQATRFR--WHQPAPFDKQQTWAIDNVYIGDGCLDMCSGH---GRC----- 547
Query: 423 DVLVSGKCHCKPNVGGRRCDM--CKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTG 480
V G C C GG CD + N + G S C
Sbjct: 548 ---VQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVAS 604
Query: 481 DCTCKRNVEGRDC 493
+
Sbjct: 605 GLALHFSGGCSRL 617
Score = 34.6 bits (78), Expect = 0.31
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 8/111 (7%)
Query: 1067 HWKIASGTGCEPC---DCDPIGSVDVTECNEYT----GQCQCKSGFGGRQCDQCQTNFWG 1119
W + + D IG + C+ + G C C +GG CD+ +T+
Sbjct: 513 RWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSL-P 571
Query: 1120 NPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAP 1170
+ F T + + C + + T
Sbjct: 572 TQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVD 622
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 38.5 bits (89), Expect = 0.005
Identities = 20/132 (15%), Positives = 31/132 (23%), Gaps = 9/132 (6%)
Query: 800 GRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQC--KCRAQTY-----GRECD 852
G C TY C C + C C Y + C
Sbjct: 1 GSHMLHCVGDTYPSNDRCCHECRPGNGMVSR--CSRSQNTVCRPCGPGFYNDVVSSKPCK 58
Query: 853 QCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDI 912
C+ + ++ +C D + G +C C G++
Sbjct: 59 PCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACK 118
Query: 913 PCRPCPCPGTVE 924
P C G
Sbjct: 119 PWTNCTLAGKHT 130
Score = 34.7 bits (79), Expect = 0.088
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 12/115 (10%)
Query: 990 CDTLTGKCLQCRYDTEGDHCQVCKAGFFGNAL----EQNCTECTCN------ILGIDHSK 1039
C G +C ++ C+ C GF+ + + + CT C L
Sbjct: 22 CRPGNGMVSRCSR-SQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQD 80
Query: 1040 GPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPC-DCDPIGSVDVTECN 1093
C G P GV C C H+ C+P +C G + +
Sbjct: 81 TVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPAS 135
Score = 31.2 bits (70), Expect = 1.4
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 13/114 (11%)
Query: 1074 TGCEPCDCDPIGSVDVTECNEYTGQC--QCKSGF-----GGRQCDQCQTNFWGNPNVECF 1126
+ C G+ V+ C+ C GF + C C + +
Sbjct: 14 SNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQ 73
Query: 1127 PCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPD--CSPCGEC 1178
C + + + C GT GV C C G+ + C P C
Sbjct: 74 LC----TATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNC 123
Score = 30.8 bits (69), Expect = 2.2
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 8/92 (8%)
Query: 951 RGTRCDGCLDNYFGNP--QERGGSCEPCDCSNNTDLALPGNCDTLTGK-----CLQCRYD 1003
+ T C C ++ + + C C+ + ++ T
Sbjct: 36 QNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSY 95
Query: 1004 TEGDHCQVCKAGFFGNALEQNCTECT-CNILG 1034
G C C G F Q C T C + G
Sbjct: 96 KPGVDCAPCPPGHFSPGDNQACKPWTNCTLAG 127
Score = 28.9 bits (64), Expect = 9.3
Identities = 27/145 (18%), Positives = 39/145 (26%), Gaps = 21/145 (14%)
Query: 997 CLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVI 1056
C+ Y + C C+ G + C+ N + G + PC P
Sbjct: 7 CVGDTYPSNDRCCHECRPGNG---MVSRCSRSQ-NTVCRPCGPGFYNDVVSSKPCKP--- 59
Query: 1057 GVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTN 1116
C C D T C G S G C C
Sbjct: 60 ---CTWCNLRSGSERKQLCTATQD---------TVCRCRAGTQPLDSYKPGVDCAPCPPG 107
Query: 1117 FWGNPNVE-CFPC-DCDPSGSATSQ 1139
+ + + C P +C +G T Q
Sbjct: 108 HFSPGDNQACKPWTNCTLAGKHTLQ 132
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 39.5 bits (92), Expect = 0.008
Identities = 46/332 (13%), Positives = 99/332 (29%), Gaps = 49/332 (14%)
Query: 1442 ESKAEEL----RKHMIILSESNSAKDYAETSKKLINEKEAKAEEVF-RGITTAKQESHAA 1496
+ ++L + ++ +DY E L A + G +H A
Sbjct: 12 NREVDDLEQWIAEREVVAGSHELGQDY-EHVTMLQERFREFARDTGNIGQERVDTVNHLA 70
Query: 1497 NILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNISGLAVNKNIQS 1556
+ L + AA++ + + + L L D R + + +
Sbjct: 71 DELINSGHSDAATIAEWK-------DGLNEAWADLL-----ELIDTRT-------QILAA 111
Query: 1557 NPEQIRERANEINNVIKSLTDIDTILTETAG-DLAKANDLKRKANLTKAGADSTKNTVQK 1615
+ ++ + ++ + + D L E G D L+R + + V++
Sbjct: 112 S-YELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQ 170
Query: 1616 IVDVLTE-ARTAQDMAEVAIQTAKDDISAARKDLSQITND----LDDAQQKSNETNVKVK 1670
+ + IQ ++++ A K L L D K + V+
Sbjct: 171 LQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFS-MVR 229
Query: 1671 LLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAE 1730
L ++ + ++ DV + E + + + + +
Sbjct: 230 DLMLWMEDVIR-QIEAQEKPRDVSSVELLMNNHQGI-KAEIDARNDSFTTC--------- 278
Query: 1731 SSGLKRARGQMLLNKASQLSVNTTAKLKQLNE 1762
G+ LL + S KL QL E
Sbjct: 279 -----IELGKSLLARKHYASEEIKEKLLQLTE 305
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 37.0 bits (86), Expect = 0.009
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 26/85 (30%)
Query: 1098 QCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTC--VCHQGIGG 1155
C C+SG+ GR C + + C +NG C C + +G
Sbjct: 36 SCDCRSGWEGRFCQREVS---------------------FLNCSLDNGGCTHYCLEEVGW 74
Query: 1156 VRCDTCARGYIGTA--PDCSPCGEC 1178
RC +CA GY C P +
Sbjct: 75 RRC-SCAPGYKLGDDLLQCHPAVKF 98
Score = 31.2 bits (71), Expect = 0.99
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 26/88 (29%)
Query: 944 CECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYD 1003
C+C+ G+ G C + +CS + G C CL +
Sbjct: 37 CDCRSGWEGRFCQREVSF--------------LNCSLD-----NGGCT---HYCL----E 70
Query: 1004 TEGDHCQVCKAGFFGNALEQNCTECTCN 1031
G C G+ C
Sbjct: 71 EVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 37.9 bits (87), Expect = 0.011
Identities = 23/133 (17%), Positives = 35/133 (26%), Gaps = 8/133 (6%)
Query: 801 RRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWN 860
CD C TY C + + C + + + R C Y
Sbjct: 41 TVCDSCEDSTYTQLWNWVPECL-----SCGSRCSSDQVETQACTREQNRICTCRPGWYCA 95
Query: 861 YPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPC-PC 919
+ C C G ++D C+ C G + + CRP C
Sbjct: 96 LSKQEGCRLCAPLRKCRPGFGVARPGTETSDV-VCKPCAPGTFSNTT-SSTDICRPHQIC 153
Query: 920 PGTVESGLSYADT 932
G + D
Sbjct: 154 NVVAIPGNASMDA 166
Score = 33.3 bits (75), Expect = 0.35
Identities = 25/176 (14%), Positives = 40/176 (22%), Gaps = 19/176 (10%)
Query: 851 CDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGI 910
C + T Q C C C + C ++D C+ C + Y +
Sbjct: 5 GSTCRLREYYDQTAQMC-C----SKCSPGQHAKVFCTKTSDTV-CDSCEDSTYTQLWNWV 58
Query: 911 DIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERG 970
C S C R Q+ IC C+ G+
Sbjct: 59 P---ECLSCGSRCSSDQVETQAC---TREQNRICTCRPGWYCALSKQ-------EGCRLC 105
Query: 971 GSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCT 1026
C D + C + +C+ N +
Sbjct: 106 APLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAIPGN 161
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate
protein binding, xylan, CMB35, glucuronic acid,
hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB:
2w46_A
Length = 139
Score = 37.2 bits (86), Expect = 0.012
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 20/90 (22%)
Query: 560 LYEAENANCKTDKCVVEIRQPLGGGNENTWTGPGFMKGFENTG--LVFEIDNIPTPMDYD 617
L EA+ C+ D + N +TG GF G +V+ I + +
Sbjct: 4 LQEAQAGFCRVDGTI--------DNNHTGFTGSGFANTNNAQGAAVVWAI-DATSSGRRT 54
Query: 618 IVVRYEPVTNTDWENVDVIVEREGNVDING 647
+ +RY + R G++ ING
Sbjct: 55 LTIRYANGGTAN---------RNGSLVING 75
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 38.8 bits (90), Expect = 0.014
Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 1026 TECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIG 1085
EC + C R C P + C W+ G C C+P
Sbjct: 379 EECRATVQPAQTLTSECSRLCRNGYCTP-----TGKCCCSPGWE---GDFCRTAKCEP-A 429
Query: 1086 SVDVTECNEYTGQCQCKSGFGGRQCDQCQTN 1116
C +C CK G+ G QC+Q +
Sbjct: 430 CRHGGVCVR-PNKCLCKKGYLGPQCEQVDHH 459
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex,
blood coagulation, CL PAIR of basic residues, disulfide
bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Length = 317
Score = 38.2 bits (89), Expect = 0.020
Identities = 23/105 (21%), Positives = 27/105 (25%), Gaps = 29/105 (27%)
Query: 1076 CEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGS 1135
C C GS YT C C G+ G C E +C
Sbjct: 8 CISQPCLHNGSC-QDSIWGYT--CTCSPGYEGSNC-------------ELAKNEC----- 46
Query: 1136 ATSQCHQNNGTC--VCHQGIGGVRCDTCARGYIGTAPDCSPCGEC 1178
+ C C G C CA+GY D C
Sbjct: 47 ----HPERTDGCQHFCLPGQESYTCS-CAQGYR-LGEDHKQCVPH 85
Score = 30.4 bits (69), Expect = 5.4
Identities = 24/139 (17%), Positives = 32/139 (23%), Gaps = 40/139 (28%)
Query: 913 PCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGS 972
PC PC + +CQ C C GY G+ C
Sbjct: 7 PCISQPC--------LHNGSCQ--DSIWGYTCTCSPGYEGSNC----------------E 40
Query: 973 CEPCDCSNNTDLALPGNCDTLTGKCLQ-CRYDTEGDHCQVCKAGFFGNALEQNCTECTCN 1031
+C T C C E C C G+ + C
Sbjct: 41 LAKNEC-----------HPERTDGCQHFCLPGQESYTCS-CAQGYRLGEDHKQCVPHDQC 88
Query: 1032 ILGIDHSKGPCDRTTGQCP 1050
G+ S+ P
Sbjct: 89 ACGVLTSEKR-APDLQDLP 106
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 36.4 bits (83), Expect = 0.020
Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 9/126 (7%)
Query: 1555 QSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQ 1614
+ N + + + L++ ++ + + K N + A+ + +
Sbjct: 14 LKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 73
Query: 1615 KIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQE 1674
K V+ LT + + VA AR + I ++ E ++ + L
Sbjct: 74 KEVEDLTASLFDEANNLVA---------DARMEKYAIEILNKRLTEQLREKDMLLDTLTL 124
Query: 1675 RLKSIQ 1680
+LK+++
Sbjct: 125 QLKNLK 130
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl,
rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP
signaling protein; 2.01A {Mus musculus} PDB: 3me2_R
3qbq_B 3nzy_B
Length = 216
Score = 37.5 bits (86), Expect = 0.024
Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 348 TKCHFDEAVYNSTGRISGGVCDSCEHNT------EGRNCERCKQYFYKDPNKEFSD--PE 399
++C + + + S VC C + E C K
Sbjct: 47 SRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHT 106
Query: 400 VCLRCDCDPGGSLDDG--ICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPN 457
RC C G + C T+ G H C C GF++ ++ +
Sbjct: 107 APRRCACTAGYHWNSDCECCRRNTECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVFSSTD 166
Query: 458 GCEPCT-CNIQGTINSQGCNKDTGDCTC 484
C+P T C + G + + ++ D C
Sbjct: 167 KCKPWTNCTLLGKLEAHQGTTES-DVVC 193
Score = 36.4 bits (83), Expect = 0.048
Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 28/186 (15%)
Query: 762 IGMYVHHGANECDCDPTGSTSKYCDQLGGNCVCKPN----VVGRRCDRCAPGTYGFGPEG 817
+G HH + P GS L C +GR C RC PG Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMHMQVTLQVTPPCTQERHYEHLGRCCSRCEPGKYLSSKCT 60
Query: 818 ------CKACD----CNHVGALDNICDVVSGQCKCRAQTYGREC-------DQCSPGYWN 860
C C + D C + +A C+ GY
Sbjct: 61 PTSDSVCLPCGPDEYLDTWNEEDK-CLLHKVCDAGKALVAVDPGNHTAPRRCACTAGYHW 119
Query: 861 YPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDI--PCRPCP 918
C+ C N +++ C C+ G++ D D P C
Sbjct: 120 NSDCECCRRNTECAPGFGAQHPLQLNKDTV----CTPCLLGFFSDVFSSTDKCKPWTNCT 175
Query: 919 CPGTVE 924
G +E
Sbjct: 176 LLGKLE 181
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 37.8 bits (88), Expect = 0.027
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 1578 IDTILTETAGDLAKANDLKRKANLTKAGAD-----STKNTVQKIVDVLTEARTAQDMAEV 1632
ID+ + KA +A L S + K+ + + A+
Sbjct: 63 IDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKA 122
Query: 1633 AIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVK 1668
+ AK ++ ++++ Q +++ A+ T +
Sbjct: 123 TLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKIT 158
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A
{Clostridium thermocellum}
Length = 156
Score = 36.5 bits (84), Expect = 0.028
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 561 YEAENANCKTDKCVVEIRQPLGGGNENTWTGPGFMKGFENTG---LVFEIDNIPTPMDYD 617
YEAE+ V +N +G ++ N L F +P Y
Sbjct: 11 YEAEDPANTLGGAAVRQ-------RDNAASGGQYVGWIGNGSNNYLQFNNVYVPQAGTYR 63
Query: 618 IVVRYE-PVTNTDWENVDVIVEREGNVDING 647
+VV++ + +V+R ++ +NG
Sbjct: 64 MVVQFANAEVFGQHSYNNNVVDRYCSISVNG 94
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling
protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Length = 213
Score = 36.9 bits (86), Expect = 0.035
Identities = 26/219 (11%), Positives = 68/219 (31%), Gaps = 50/219 (22%)
Query: 1487 TTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIRNIS 1546
++ + + + D A + S +++ L
Sbjct: 4 EVKERFVNLNRLFQELVGDFQAKSDQ-----LVSVIQ---DMEKISENIMEELKKSGTNV 55
Query: 1547 GLAVNKNIQSNPEQIR---ERANEINNVIKSLTDID----------TILTETAGDLAK-- 1591
V + +++ QI E I +I+++ I TI AG+ K
Sbjct: 56 DQIVERVKEAS-SQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGF 114
Query: 1592 ---ANDLKRKANLT-KAGAD----------STKNTVQKIVDVLTEARTAQDMAEVAIQTA 1637
AN+++ +N T + S++ +++ + + T + +
Sbjct: 115 MIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQ-NMVRF 173
Query: 1638 KDDISAARKDLS-----------QITNDLDDAQQKSNET 1665
++ +++ + + ++D A + ET
Sbjct: 174 MENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEET 212
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 34.9 bits (80), Expect = 0.035
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 1286 EEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQC 1345
E IKK + ++ KENA ++ A + + K+ E++ +++
Sbjct: 5 EAIKKKMQMLKLDKENA-------IDRAEQAEADKKQAEDRCKQL----EEEQQGLQKKL 53
Query: 1346 KRTENLVTKTFPQFTQGQ---EENEKALQRLNEKITSLEKNLPDLNE 1389
K TE+ V K + Q E+ EK ++ SL + + + E
Sbjct: 54 KGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEE 100
Score = 34.1 bits (78), Expect = 0.071
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 24/103 (23%)
Query: 1614 QKIVDVLTEARTAQDMAEVAIQTAK----------DDISAARKDLSQITNDLDDAQQKSN 1663
+K+ + + A D AE A K ++ +K L ++++ +
Sbjct: 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68
Query: 1664 ETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVAL 1706
E K L++ K D E E +L + + L
Sbjct: 69 EAQEK---LEQAEKKAT-----------DAEAEVASLNRRIQL 97
Score = 30.3 bits (68), Expect = 1.7
Identities = 18/86 (20%), Positives = 36/86 (41%)
Query: 1634 IQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDV 1693
+Q K D A Q D A+ + + + + LQ++LK + + S +
Sbjct: 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70
Query: 1694 ENEEKNLEKEVALAQKQASGLRSRYQ 1719
+ + + EK+ A+ + + L R Q
Sbjct: 71 QEKLEQAEKKATDAEAEVASLNRRIQ 96
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 32 carbohydrate-binding module; HET:
MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Length = 161
Score = 36.0 bits (83), Expect = 0.039
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 115 SWWQSENGVENVTIQLDMEAEFHFTHLIIYF-KTFRPAAMLIERSHDFGKTWQV 167
S W S+NG +D+E L ++F K +E + +
Sbjct: 56 SLWISDNGAMPANATIDLEGNNFVDFLELHFEKEGFRFQFKVEVEDE-SGNRET 108
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 37.6 bits (87), Expect = 0.041
Identities = 49/332 (14%), Positives = 81/332 (24%), Gaps = 67/332 (20%)
Query: 876 CDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQL 935
C +K T +SC +RCI G + CP GT C
Sbjct: 15 CLAKKYTHLSCDKVFCQPW-QRCIEGTC------VCKLPYQCPKNGT--------AVCAT 59
Query: 936 DPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTG 995
+ RS C+ K CL +P + + C ++L G
Sbjct: 60 NRRSFPTYCQQKS-------LECL-----HPGTKFLNNGTCTAEGKFSVSLKHGNTDSEG 107
Query: 996 KCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCP----C 1051
++ + + +CK+ + C LG +G + +
Sbjct: 108 -IVEVKLVDQDKTMFICKSSW-----SMREANVACLDLG--FQQGADTQRRFKLSDLSIN 159
Query: 1052 LPNVIGVSCD-------RCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYT-------- 1096
+ V C C + C D + +
Sbjct: 160 STECLHVHCRGLETSLAECTFTKRRTMGYQDFADVVCYT-QKADSPMDDFFQCVNGKYIS 218
Query: 1097 ------GQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATS-----QCHQNNG 1145
G C C CQ + + C P +G +
Sbjct: 219 QMKACDGINDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGF 278
Query: 1146 TCVCHQGIGGVRCDTCARGY-IGTAPDCSPCG 1176
V + + D A I + CG
Sbjct: 279 ASVAQEETEILTADMDAERRRIKSLLPKLSCG 310
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 37.2 bits (86), Expect = 0.042
Identities = 30/239 (12%), Positives = 83/239 (34%), Gaps = 41/239 (17%)
Query: 1566 NEINNVIKSLTDIDTIL--TETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEA 1623
I + L++++ +L + DLA N+L +K L +A + ++ ++ +
Sbjct: 10 TGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN------ 63
Query: 1624 RTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGF 1683
A + + + R+ ++ + + R +
Sbjct: 64 SQADSLMTSS-AFDTSQVKDKRETINGRFQRI-------------KSMAAARRAKLNE-S 108
Query: 1684 LQNGRSAMDVENEEKNLEKEVALAQKQASG--------LRSRYQETDNKLLSKAESSGLK 1735
+ + D+++EE ++++ L + G LR +++ + +L + +
Sbjct: 109 HRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGV 168
Query: 1736 RARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIAELQKRIQSCINF 1794
G+ L + + +L Q + EL + A +R++ + +
Sbjct: 169 LDTGKKLSDDNTIGKEEIQQRLAQFVD----------HWKELKQLAAARGQRLEESLEY 217
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 37.1 bits (86), Expect = 0.054
Identities = 25/158 (15%), Positives = 43/158 (27%), Gaps = 26/158 (16%)
Query: 916 PCPCPGTVESGLSYADTCQLDPRSQD-VICECKEGYRGTRCDGCLDNYFGNPQERGGSCE 974
CP P T++ + Q + +D I CK+GY+ + L ++
Sbjct: 2 KCPQPKTLDEF-TIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFT----------- 49
Query: 975 PCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCN--- 1031
C ++ + K C + G + + C+
Sbjct: 50 -AVCQDDGT----WHRAMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPY 104
Query: 1032 -----ILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCL 1064
G S+ T Q G RCL
Sbjct: 105 YKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCL 142
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic
acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB:
2vzq_A* 2vzr_A*
Length = 127
Score = 34.8 bits (80), Expect = 0.069
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 29/93 (31%)
Query: 561 YEAENANCKTDKCVVEIRQPLGGGNENT----WTGPGFMKGFENTG--LVFEIDNIPTPM 614
Y+AE+A + G + +TG GF+ G + + + +P+
Sbjct: 6 YQAEDAT-------------IVQGAVESNHAGYTGTGFVNYDNVAGSSVEWTV-TVPSAG 51
Query: 615 DYDIVVRYEPVTNTDWENVDVIVEREGNVDING 647
YD+VVRY T T R + +NG
Sbjct: 52 TYDVVVRYANGTTTS---------RPLDFSVNG 75
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 34.1 bits (78), Expect = 0.072
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 1607 DSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETN 1666
K + +D +A + AE + +DDI K L + D ++ +++
Sbjct: 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71
Query: 1667 VKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVAL 1706
L ++ E+E +L + + L
Sbjct: 72 DS---LLFAEENAA-----------KAESEVASLNRRIQL 97
Score = 33.7 bits (77), Expect = 0.092
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 1286 EEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQC 1345
+ IKK + ++ KENA L+ QA +E+S + E I E+Q
Sbjct: 5 DAIKKKMQMLKLDKENA-----------LDRAEQAEADKKAAEERSKQLEDDIVQLEKQL 53
Query: 1346 KRTENLVTKTFPQFTQGQ---EENEKALQRLNEKITSLEKNLPDLNE 1389
+ TE+ + + + + E+ + ++ SL + + + E
Sbjct: 54 RVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100
Score = 30.2 bits (68), Expect = 1.7
Identities = 18/86 (20%), Positives = 34/86 (39%)
Query: 1634 IQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDV 1693
+Q K D A Q D A+++S + + L+++L+ + Q
Sbjct: 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70
Query: 1694 ENEEKNLEKEVALAQKQASGLRSRYQ 1719
E+ E+ A A+ + + L R Q
Sbjct: 71 EDSLLFAEENAAKAESEVASLNRRIQ 96
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical
barrel, beta barrel; 2.10A {Escherichia coli} SCOP:
f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Length = 428
Score = 36.7 bits (85), Expect = 0.077
Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 31/187 (16%)
Query: 1616 IVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQER 1675
I DV AR D TA++++ A + L QIT + N N K Q
Sbjct: 151 ITDVQ-NARAQYDTVLANELTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPV 209
Query: 1676 LKSIQAGFLQN--GRSAMDVENEEKNLEKEVALAQ-KQASG-------LRSRYQETDNKL 1725
++ +N A L +++A Q +QA L + +D
Sbjct: 210 NALLKEAEKRNLSLLQAR--------LSQDLAREQIRQAQDGHLPTLDLTASTGISDTSY 261
Query: 1726 LSKAESSGLKRARGQMLLNKAS---QLSVN------TTAKLKQLNETEAMFNSQESELTE 1776
+ + S+ +++KQ + F +L
Sbjct: 262 SGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQ---AQYNFVGASEQLES 318
Query: 1777 LSKNIAE 1783
+++ +
Sbjct: 319 AHRSVVQ 325
Score = 35.1 bits (81), Expect = 0.21
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 1621 TEARTAQDMAEVAIQTAKDDISAARKDLSQIT----NDLDDAQQKSNETNVKVKLLQERL 1676
++ Q A+ A + + +A + + Q N+++ + N V Q L
Sbjct: 298 VNSQVKQ--AQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSL 355
Query: 1677 KSIQAGFLQNGRSAMDVENEEKNL-EKEVALAQKQASGLRSRYQETDNKLLSKAESSGLK 1735
+++AG+ R+ +DV + L + LA +RY N+L +K
Sbjct: 356 DAMEAGYSVGTRTIVDVLDATTTLYNAKQELAN-------ARYNYLINQL-------NIK 401
Query: 1736 RARGQMLLNKASQLSVNT 1753
A G LN+ L++N
Sbjct: 402 SALGT--LNEQDLLALNN 417
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond,
glycoprotein, membrane, secreted, signal-anchor,
transmembrane, apoptosis; 2.45A {Homo sapiens} PDB:
3mi8_D 3mhd_D
Length = 176
Score = 35.2 bits (80), Expect = 0.083
Identities = 21/169 (12%), Positives = 36/169 (21%), Gaps = 3/169 (1%)
Query: 913 PCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGS 972
P ++ C P V C+ T C C ++
Sbjct: 2 SVAETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRD-SPTTCGPCPPRHYTQFWNYLER 60
Query: 973 CEPCDCSNNTDLALPGNCDTLTGKCLQCRYDT--EGDHCQVCKAGFFGNALEQNCTECTC 1030
C C+ C + +CR C + G + T
Sbjct: 61 CRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQN 120
Query: 1031 NILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPC 1079
++ C P+ + L + T C
Sbjct: 121 TQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTST 169
Score = 35.2 bits (80), Expect = 0.090
Identities = 26/164 (15%), Positives = 43/164 (26%), Gaps = 15/164 (9%)
Query: 329 PAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRISGGVCDSCEHNT------EGRNCER 382
P ++T C +C V R S C C C
Sbjct: 10 PWRDAETGERLVC------AQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRY 63
Query: 383 CKQYFYKDPNKEFS-DPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRC 441
C + + + C C G G C + +G +C
Sbjct: 64 CNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQC 123
Query: 442 DMCKDGFWNFNETNPNGCEPCT-CNIQGTINSQGCNKDTGDCTC 484
C G ++ + ++ C+P C G + + D C
Sbjct: 124 QPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSH-DTLC 166
Score = 30.9 bits (69), Expect = 2.1
Identities = 25/135 (18%), Positives = 37/135 (27%), Gaps = 13/135 (9%)
Query: 849 RECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRL 908
R + W + C T CR + C C +Y
Sbjct: 1 RSVAETPTYPWRDAETGERLV---CAQCPPGTFVQRPCRRDSPTT-CGPCPPRHYTQFWN 56
Query: 909 GIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQE 968
++ CR C A C + + C C+ G+ CL++ P
Sbjct: 57 YLE-RCRYCNVL--CGEREEEARACH---ATHNRACRCRTGFFAH-AGFCLEHASCPPGA 109
Query: 969 RGGSCEPCDCSNNTD 983
G P S NT
Sbjct: 110 --GVIAPGTPSQNTQ 122
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle; HET:
ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Length = 430
Score = 36.2 bits (84), Expect = 0.11
Identities = 15/158 (9%), Positives = 48/158 (30%), Gaps = 13/158 (8%)
Query: 1567 EINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTA 1626
+I+ S D L L KA + + V++I +
Sbjct: 120 KIDGKTVSYKDYSIFLENE-NILIKAKNFLVF-----------QGDVEQIAAQSPVELSR 167
Query: 1627 QDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQN 1686
K + ++ + +++ ++ + + ++K + + +
Sbjct: 168 MFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRG 227
Query: 1687 GRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNK 1724
R + E + + E + + + +++ + K
Sbjct: 228 SRYD-EAEGRFEVINNETEQLKAEEKKILNQFLKIKKK 264
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 35.2 bits (80), Expect = 0.11
Identities = 18/125 (14%), Positives = 30/125 (24%), Gaps = 11/125 (8%)
Query: 785 CDQLGGNCVCKPNVVGRRCD----RCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQC 840
C + GN VC C C+ ++ C + D CD
Sbjct: 10 CQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFS-DGHCDSQCNSA 68
Query: 841 KCRAQTYGRECDQCSPGYWNYPTCQRCICNGHAD------LCDSKTGTCISCRNSTDGEN 894
C + + + C+ +GH D C+ C
Sbjct: 69 GCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAG 128
Query: 895 CERCI 899
+
Sbjct: 129 TLVVV 133
Score = 32.1 bits (72), Expect = 1.2
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 456 PNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDC---NQCLPHFWGLSESEEYGCK 512
C++Q N+ C D GDC+ N ++C QC +F +
Sbjct: 11 QEDAGNKVCSLQ--CNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSA 68
Query: 513 PCDCDPGASYDNNCDVISG-QCKCKPHASGRTC 544
C D CK H S C
Sbjct: 69 GCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHC 101
Score = 30.6 bits (68), Expect = 3.7
Identities = 22/101 (21%), Positives = 27/101 (26%), Gaps = 9/101 (8%)
Query: 1091 ECNEYTGQCQCKS-------GFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQN 1143
EC E G C G+ G C + W N G SQC N
Sbjct: 9 ECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQC--N 66
Query: 1144 NGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDS 1184
+ C+ C Y D G C +S
Sbjct: 67 SAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNS 107
Score = 29.4 bits (65), Expect = 8.5
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 12/103 (11%)
Query: 1076 CEPCDCDPIGSVDVTECNEYTGQC----QCKSGFGGRQCD-QCQTNFWGNPNVECFPCDC 1130
C C G N+ C QC F CD QC + +C +
Sbjct: 23 CNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEG 82
Query: 1131 DPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCS 1173
+ C + C QG C++ + G DC+
Sbjct: 83 QCNPLYDQYCKDHFSDGHCDQG-----CNSAECEWDG--LDCA 118
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane
fusion protein, drug efflux pump, periplasmic protein;
2.99A {Escherichia coli}
Length = 341
Score = 35.8 bits (83), Expect = 0.13
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 1588 DLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKD 1647
LA+ R+ L + A S Q+ +D A T + + I T I +
Sbjct: 93 KLARVT-YSRQQRLAQTQAVS-----QQDLD---NAATEMAVKQAQIGTIDAQIKRNQAS 143
Query: 1648 LSQITNDLDDAQ 1659
L +LD +
Sbjct: 144 LDTAKTNLDYTR 155
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 89 glycoside hydrolase, family 32
carbohyd binding module; HET: MSE; 1.55A {Clostridium
perfringens}
Length = 149
Score = 34.4 bits (79), Expect = 0.14
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 115 SWWQSENGVENVTIQLDMEAEFHFTHLIIYFKTFRPAAMLIERSHDFGKTWQ 166
+ W E ++ D+ E + + I K P IE S+D G W
Sbjct: 53 TLWVPGQE-EEKSVTFDLSKEKDISAIDIVSKGNSPLKYSIEISND-GTEWT 102
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate
binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Length = 140
Score = 33.9 bits (77), Expect = 0.14
Identities = 12/113 (10%), Positives = 40/113 (35%), Gaps = 31/113 (27%)
Query: 554 PPYDNFLYEAENANCKTDKCVVEIRQPLGGGNENTWTGPGFMKGFENTG--LVFEIDNIP 611
P +++ Y A +A+ + + G + + G +++ + ++P
Sbjct: 4 PEGNSWTYTAASAS-------------ITAPAQLV----GNVGELQGAGSAVIWNV-DVP 45
Query: 612 TPMDYDIVVRYEPVTNTDWENVDVIVEREGNVDING-PCGNAVPQDDIKRTRL 663
+Y I + + ++ + + + ++G A + + T +
Sbjct: 46 VTGEYRINLTW----SSPY------SSKVNTLVMDGTALSYAFAEATVPVTYV 88
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 35.6 bits (82), Expect = 0.18
Identities = 16/161 (9%), Positives = 37/161 (22%), Gaps = 18/161 (11%)
Query: 861 YPTCQRCICNGHADLCDSKTGTCISCRNS--TDGENCER--CINGYYGDPRLGIDIPCRP 916
+P C +S+ C+ + ++ ++G+ L P
Sbjct: 233 HPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGF----SLQSCRHSIP 288
Query: 917 CPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRG--TRCDGCLDNYFGNPQERGGSCE 974
C + D +++ + + C + F SC
Sbjct: 289 VFCHSSFYHDT--------DFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCN 340
Query: 975 PCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAG 1015
L+ G+ + T +
Sbjct: 341 EGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECT 381
Score = 33.3 bits (76), Expect = 0.86
Identities = 16/110 (14%), Positives = 25/110 (22%), Gaps = 7/110 (6%)
Query: 789 GGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYG 848
+ G C F L D+V+ + Q
Sbjct: 266 STRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDF----LGEELDIVAAKSHEACQKLC 321
Query: 849 RECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERC 898
+C ++ Y T + CN C K + S G
Sbjct: 322 TNAVRCQ--FFTY-TPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISG 368
Score = 33.3 bits (76), Expect = 0.91
Identities = 29/199 (14%), Positives = 44/199 (22%), Gaps = 27/199 (13%)
Query: 297 PDMVHGRCECTHNTQGLNCEKCIDF-YNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEA 355
PD CTH+ C+ F + W SQ N C +
Sbjct: 221 PDAFVCGRICTHHPG------CLFFTFFSQEWP--KESQRNLCLLKTS-----ESGLPST 267
Query: 356 VYNSTGRISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDG 415
+ +SG SC H+ C FY D +
Sbjct: 268 RIKKSKALSGFSLQSCRHS----IPVFCHSSFY-------HDTDFLGEELDIVAAK-SHE 315
Query: 416 ICDPY-TDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQG 474
C T+ V + + N + T+
Sbjct: 316 ACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCK 375
Query: 475 CNKDTGDCTCKRNVEGRDC 493
+ + R V G
Sbjct: 376 MDNECTTKIKPRIVGGTAS 394
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 35.7 bits (81), Expect = 0.18
Identities = 14/121 (11%), Positives = 26/121 (21%), Gaps = 18/121 (14%)
Query: 1042 CDRTTGQCPCLPNVIGVSCD-RCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQ 1100
R + +V C RCL
Sbjct: 8 AARRLDESLSAGSVQRARCASRCLSLQIT----RISAFFQHFQNNGS----------LVW 53
Query: 1101 CKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDT 1160
C++ +C + +C + +C + C + I V+
Sbjct: 54 CQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTS---CEFLKYILLVKQGD 110
Query: 1161 C 1161
C
Sbjct: 111 C 111
Score = 31.9 bits (71), Expect = 2.3
Identities = 22/144 (15%), Positives = 33/144 (22%), Gaps = 11/144 (7%)
Query: 403 RCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRC-DMCKDGFWNFNETNPNGCEP 461
RC I + C+ + +C + CK+ + CEP
Sbjct: 25 RCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEP 84
Query: 462 C------TCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSE-SEEYGCKPC 514
C GDC G C+ +E S C C
Sbjct: 85 LFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASG-FAAACVESCEVDNECSGVKKC--C 141
Query: 515 DCDPGASYDNNCDVISGQCKCKPH 538
G + + G
Sbjct: 142 SNGCGHTCQVPKTLYKGVPLKPRK 165
Score = 31.9 bits (71), Expect = 2.4
Identities = 28/165 (16%), Positives = 40/165 (24%), Gaps = 24/165 (14%)
Query: 944 CECKEGYRGTRCD-GCL------DNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGK 996
+ RC CL + F + GS C N+ C
Sbjct: 15 SLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSL--VWCQNHK------QCSKCLEP 66
Query: 997 CLQCRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVI 1056
C + D CQ F + T C K G CP P
Sbjct: 67 C-KESGDLRKHQCQSFCEPLFPKKSYECLTSCEF-------LKYILLVKQGDCPA-PEKA 117
Query: 1057 GVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQC 1101
C+++ +G + C + G Y G
Sbjct: 118 SGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLK 162
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B*
1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B*
1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B*
2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 33.4 bits (77), Expect = 0.18
Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 23/83 (27%)
Query: 1098 QCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVR 1157
C C GF G+ C+ C + + CH+ V
Sbjct: 64 TCTCLEGFEGKNCEL-------FTRKLC-----------SLDNGDCDQF--CHEEQNSVV 103
Query: 1158 CDTCARGYIGTA--PDCSPCGEC 1178
C +CARGY C P G
Sbjct: 104 C-SCARGYTLADNGKACIPTGPY 125
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis,
GDP, GMP, dynamin related, large GTPase family. GMPPNP,
GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1
c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Length = 592
Score = 35.3 bits (80), Expect = 0.18
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1286 EEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQC 1345
E +K+L + +M + LL+E AL+L Q +++S + +I D + +
Sbjct: 526 EHLKQLTE--KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583
Query: 1346 KRTEN 1350
+R +
Sbjct: 584 RRRKA 588
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling
protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1
g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 33.9 bits (77), Expect = 0.20
Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 24/139 (17%)
Query: 1050 PCLPNVIGVSCDRCLKNHWKIASG--TGCEPCD--CDPIGSVDVTECNEYT-GQCQCKSG 1104
C C C + + C C +G V+++ C C C+
Sbjct: 32 DCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKN 91
Query: 1105 FGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARG 1164
++W +CF C +G+ C + T TC G
Sbjct: 92 Q--------YRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVC-----------TCHAG 132
Query: 1165 YIGTAPDCSPCGECFDNWD 1183
+ +C C C + +
Sbjct: 133 FFLRENECVSCSNCKKSLE 151
Score = 31.6 bits (71), Expect = 1.3
Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 15/125 (12%)
Query: 933 CQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPC-DCSNNTDLALPGNCD 991
C + + +C + T C C F + C C C +C
Sbjct: 20 CTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCT 79
Query: 992 TLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECT-CNILGIDHSKGPCDRTT-GQC 1049
C C+ + + +N +C C++ C C
Sbjct: 80 V-----------DRDTVCG-CRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVC 127
Query: 1050 PCLPN 1054
C
Sbjct: 128 TCHAG 132
Score = 31.2 bits (70), Expect = 1.8
Identities = 22/126 (17%), Positives = 29/126 (23%), Gaps = 23/126 (18%)
Query: 794 CKPNVVGRRCDRCAPGTYGFGPEG------CKACDCNHVGALDNICDVVS-GQCKCRAQT 846
C C C G++ C C + C V C CR
Sbjct: 33 CPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQ 92
Query: 847 Y----GRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISC-----RNSTDGENCER 897
Y QC C C+ C K T +C + +C
Sbjct: 93 YRHYWSENLFQCFN-------CSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSN 145
Query: 898 CINGYY 903
C
Sbjct: 146 CKKSLE 151
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion;
HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A*
2p28_A*
Length = 280
Score = 34.8 bits (79), Expect = 0.21
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 1079 CDCD-PIGSVDVTECNEYT----GQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPS 1133
C+C S D + C+ G C+C +G+ G+ C +CQT + +E C D +
Sbjct: 184 CECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNC-ECQTQGRSSQELEG-SCRKDNN 241
Query: 1134 GSATS---QCHQNNGTCVCHQGIGG 1155
S C G C+CH
Sbjct: 242 SIICSGLGDCV--CGQCLCHTSDVP 264
Score = 32.5 bits (73), Expect = 1.1
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 821 CDCNHVGALDNIC----DVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLC 876
C C ++C + G C+C G+ C+ + G + C + ++ +C
Sbjct: 186 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 245
Query: 877 DSKTGTCI----SCRNSTD------GENCE 896
S G C+ C S G+ CE
Sbjct: 246 -SGLGDCVCGQCLCHTSDVPGKLIYGQYCE 274
Score = 31.0 bits (69), Expect = 3.0
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 15/69 (21%)
Query: 1128 CDCDPSGSATSQCHQN----NGTCVCHQGIGGVRCDTCARGYI-----------GTAPDC 1172
C C S CH G C C G G C+ +G + C
Sbjct: 186 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 245
Query: 1173 SPCGECFDN 1181
S G+C
Sbjct: 246 SGLGDCVCG 254
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 35.1 bits (81), Expect = 0.21
Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 16/145 (11%)
Query: 915 RPCPCPGTVESGLSYADTCQLDPRSQD-VICECKEGYRGTRCDGCLDNYFGNPQERGG-- 971
CP P +G + Q +D C+ GY + L ++ Q+ G
Sbjct: 15 HACPYPMAPPNG--HVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWD 72
Query: 972 ----SCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTE 1027
+C DC DL G + +TG + C+ ++ N +
Sbjct: 73 RPMPACSIVDCGPPDDLP-SGRVEYITGPGVTTYKAVIQYSCE-----ETFYTMKVNDGK 126
Query: 1028 CTCNILGI-DHSKGPCDRTTGQCPC 1051
C G SKG + C
Sbjct: 127 YVCEADGFWTSSKGEKSLPVCEPVC 151
Score = 31.7 bits (72), Expect = 2.2
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 32/111 (28%)
Query: 1098 QCQCKSGF----GGRQCD----QCQTN-FWGNPNVECFPCDCD-----PSGSATSQCHQN 1143
C++G+ G CQ + W P C DC PSG
Sbjct: 42 SIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPG 101
Query: 1144 NGT------CVCHQGI-----GGVRCDTCARGY------IGTAPDCSP-CG 1176
T C + + A G+ + P C P CG
Sbjct: 102 VTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVCG 152
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain,
chitin-binding, GERM agglutinin, chitin-binding protein;
HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A*
2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A
1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A*
Length = 171
Score = 33.8 bits (77), Expect = 0.22
Identities = 36/193 (18%), Positives = 44/193 (22%), Gaps = 32/193 (16%)
Query: 970 GGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAGFFGNALEQNCTECT 1029
G +C NN + G C C G CQ N C
Sbjct: 4 GEQGSNMECPNNLCCSQYGYCGMGGDYC--------GKGCQ--------NGACWTSKRCG 47
Query: 1030 CNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDV 1089
G + C G C G C PC D
Sbjct: 48 SQAGGATCTNNQCCSQYGYCGFGAEYCGAGC--------------QGGPCRADIKCGSQA 93
Query: 1090 TECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQ--CHQNNGTC 1147
C + GF G + C PC D G + C G+C
Sbjct: 94 GGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSC 153
Query: 1148 VCHQGIGGVRCDT 1160
G G C +
Sbjct: 154 GIGPGYCGAGCQS 166
Score = 32.7 bits (74), Expect = 0.56
Identities = 20/153 (13%), Positives = 27/153 (17%), Gaps = 15/153 (9%)
Query: 400 VCLRCDCDPG-----GSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNET 454
C G + +C + G + C G
Sbjct: 25 GMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCR 84
Query: 455 NPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPC 514
C + C G C G C
Sbjct: 85 ADIKCGSQAGG--KLCPNNLCCSQWGFCGLGSEFCGGGCQSG--------ACSTDKPCGK 134
Query: 515 DCDPGASYDNNCDVISGQCKCKPHASGRTCSTP 547
D +N C G C P G C +
Sbjct: 135 DAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSG 167
Score = 30.4 bits (68), Expect = 3.5
Identities = 24/131 (18%), Positives = 35/131 (26%), Gaps = 10/131 (7%)
Query: 768 HGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVG 827
T+ C G C G C G C + +
Sbjct: 43 SKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGC----QGGPCRADIKCGSQAGGKLC 98
Query: 828 ALDNICDVVSGQCKCRAQTYGRECDQ--CSPGYWNYPTCQRCICNGHADLCDSKTGTCIS 885
+N+C G C ++ G C CS +C + C SK G+C
Sbjct: 99 P-NNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNY--CCSKWGSC-G 154
Query: 886 CRNSTDGENCE 896
G C+
Sbjct: 155 IGPGYCGAGCQ 165
Score = 29.2 bits (65), Expect = 7.3
Identities = 35/171 (20%), Positives = 42/171 (24%), Gaps = 20/171 (11%)
Query: 789 GGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGAL--DNICDVVSGQCKCRAQT 846
C + G D C G K C GA +N C G C A+
Sbjct: 14 NNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEY 73
Query: 847 YGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDP 906
G C Q +LC S+ G C + G C D
Sbjct: 74 CGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFC-GLGSEFCGGGC--QSGACSTDK 130
Query: 907 RLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDG 957
G D R C S+ C GY G C
Sbjct: 131 PCGKDAGGRVCTNNYC---------------CSKWGSCGIGPGYCGAGCQS 166
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 32.5 bits (74), Expect = 0.23
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 897 RCINGYYGDPRLGIDIPCRPCPCP--GTVESGLSYADTCQLDPRSQDVICECKEGYRGTR 954
C +G + + C C GT CQ D +C+C EG+ G
Sbjct: 35 WCNSGRAQCHSVPVK-SCSEPRCFNGGT----------CQQALYFSDFVCQCPEGFAGKS 83
Query: 955 CD 956
C+
Sbjct: 84 CE 85
Score = 30.5 bits (69), Expect = 0.90
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 9/63 (14%)
Query: 1098 QCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVR 1157
C C SG P C C G+ + ++ C C +G G
Sbjct: 33 YCWCNSGRAQCHS---------VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKS 83
Query: 1158 CDT 1160
C+
Sbjct: 84 CEI 86
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain,
TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Length = 341
Score = 34.7 bits (80), Expect = 0.23
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Query: 1568 INNVIKSLTDIDTILTETA-GDLAKANDLKRKANLTKAGADSTKNTVQKIVDVLTEARTA 1626
++ + + + ++ + + A G+L + +A+ A S + + ++ + + R
Sbjct: 1 MSTITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLMRTVGDVRNG 60
Query: 1627 QDMAEVAIQTAKDDISAARKDLSQITNDLDDAQQKSN--ET 1665
+ AI + +I+ DLS T QQ ++ ET
Sbjct: 61 AN----AIYSGASEIATGNNDLSSRTE-----QQAASLEET 92
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 35.4 bits (79), Expect = 0.24
Identities = 28/269 (10%), Positives = 56/269 (20%), Gaps = 10/269 (3%)
Query: 955 CDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKA 1014
G ++ G + D++ G C C D A
Sbjct: 320 YSGTAYDFSGTMAKAAAESGYPQYREGKDVSERVTLPVSIGNCQSC---HSTDDKGPVDA 376
Query: 1015 GFFGNALEQNCTEC-------TCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNH 1067
F + C C N + +G DR N
Sbjct: 377 ASFKHHKGLACASCHMSGFNPVDNSEWLTPPEGQKDRGFVGNYFHYYATPEIDGIPGVNL 436
Query: 1068 WKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFP 1127
+ GC C + + + + +
Sbjct: 437 VHVFQNGGCASCHAEQGEEGSAKYHLAKANATKLLRTEYAYKLENGTFDVAKGELTFTVN 496
Query: 1128 CDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDSILR 1187
D + + + + G + G +G + + ++ L
Sbjct: 497 WHSDVAPHQDPKVKEFWVSLTAFNGTEYTMGPRPSNGTLGRSENRISVNLAKVETNANLT 556
Query: 1188 GLADQTTKVITDASNIKQTGASGAYTKEF 1216
+ + + T G S K+
Sbjct: 557 AVPNGSKVTYTLTGIKAVIGTSSVPYKQI 585
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 34.1 bits (77), Expect = 0.26
Identities = 19/129 (14%), Positives = 28/129 (21%), Gaps = 16/129 (12%)
Query: 419 PYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKD 478
Y L S + ++ G + PC G
Sbjct: 69 FYEFLSLRSLDXG---IMADPTVNVPLLGTVPHXASVVQVGFPCLGX------QDGVAAF 119
Query: 479 TGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCKPH 538
D N EG + ++ C P C G + C+C
Sbjct: 120 EVDVIV-MNSEGNTILXTPQNAIFFKTCQQAEC-PGGCRNGGFCNER-----RICECPDG 172
Query: 539 ASGRTCSTP 547
G C
Sbjct: 173 FHGPHCEGT 181
Score = 32.6 bits (73), Expect = 0.73
Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 14/85 (16%)
Query: 1042 CDRTTGQCPCLPNVIGVSCDR------------CLKNHWKIASGTGCEPCDCDPIGSVDV 1089
PCL GV+ L C+ +C
Sbjct: 100 ASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGG 159
Query: 1090 TECNEYTGQCQCKSGFGGRQCDQCQ 1114
CNE C+C GF G C+ +
Sbjct: 160 F-CNE-RRICECPDGFHGPHCEGTK 182
Score = 31.4 bits (70), Expect = 1.6
Identities = 13/122 (10%), Positives = 22/122 (18%), Gaps = 6/122 (4%)
Query: 756 KKQHYSIGMYVHHGANECD-----CDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGT 810
+ Y G+ + C G
Sbjct: 66 AEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIV 125
Query: 811 YGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICN 870
N + G C+ R +C G+ P C+ +
Sbjct: 126 MNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHG-PHCEGTKHH 184
Query: 871 GH 872
H
Sbjct: 185 HH 186
Score = 31.4 bits (70), Expect = 2.0
Identities = 13/80 (16%), Positives = 22/80 (27%)
Query: 883 CISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDV 942
C DG I + T + ++
Sbjct: 106 GFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERR 165
Query: 943 ICECKEGYRGTRCDGCLDNY 962
ICEC +G+ G C+G ++
Sbjct: 166 ICECPDGFHGPHCEGTKHHH 185
Score = 31.0 bits (69), Expect = 2.4
Identities = 11/97 (11%), Positives = 19/97 (19%), Gaps = 14/97 (14%)
Query: 1078 PCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPC--------- 1128
P P+ + C G + +
Sbjct: 86 PTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKT 145
Query: 1129 ----DCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTC 1161
+C C++ C C G G C+
Sbjct: 146 CQQAECPGGCRNGGFCNERR-ICECPDGFHGPHCEGT 181
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase;
2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 34.4 bits (78), Expect = 0.29
Identities = 22/187 (11%), Positives = 53/187 (28%), Gaps = 15/187 (8%)
Query: 1614 QKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDLDDAQ----------QKSN 1663
+K + L + + + + + L +L +
Sbjct: 38 EKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEEYHDG 97
Query: 1664 ETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVA-LAQKQASGLRSRYQETD 1722
K + E+ I L + +++ +++ E + + +K + R Q
Sbjct: 98 IRRRKEQHATEQTAKITE--LAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMM 155
Query: 1723 NKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIA 1782
KA LK+ + + Q K + + Q L + +
Sbjct: 156 RSTSDKAAQERLKKEINNSHIQEVVQT--IKLLTEKTARYQQKLEEKQAENLRAIQEKEG 213
Query: 1783 ELQKRIQ 1789
+LQ+
Sbjct: 214 QLQQEAV 220
Score = 30.9 bits (69), Expect = 3.5
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 1696 EEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLLNKASQLSVNTTA 1755
+ K K + +K+ L + + +LL K L+ + L ++ +L
Sbjct: 26 QMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEM 85
Query: 1756 KLKQLNE--TEAMFNSQESELTELSKNIAELQKRIQS 1790
+L L E + + +E TE + I EL + Q
Sbjct: 86 ELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQI 122
Score = 30.5 bits (68), Expect = 4.8
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Query: 1270 TTQRINLARLALNDLTEEIKKLNKTGEM-LKENATLLQENNVEGALELTRQAHDTSLKLK 1328
T Q + LA E+K L ++ E +K+ L+ ++ + R D + + +
Sbjct: 107 TEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQER 166
Query: 1329 EQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKI 1377
+ I + + K + + + Q EN +A+Q ++
Sbjct: 167 LKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQL 215
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease,
EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein,
hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A
{Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB:
1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L*
2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L*
1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Length = 142
Score = 33.1 bits (76), Expect = 0.30
Identities = 23/128 (17%), Positives = 30/128 (23%), Gaps = 45/128 (35%)
Query: 1075 GCEPCDCDPIGS------VDVTEC---------------NEYTGQCQCKSGFGGRQCDQC 1113
E D +C Y C C F GR C+
Sbjct: 27 AREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYI--CFCLPAFEGRNCET- 83
Query: 1114 QTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTC-VCHQGIGGVRCDTCARGYIGTA--P 1170
+ + + C +N G C G R C GY A
Sbjct: 84 ------HKD-DQLICVN-----------ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125
Query: 1171 DCSPCGEC 1178
C+P E
Sbjct: 126 SCTPTVEY 133
Score = 29.6 bits (67), Expect = 4.4
Identities = 23/146 (15%), Positives = 31/146 (21%), Gaps = 34/146 (23%)
Query: 886 CRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICE 945
C E + C PC +C+ +S IC
Sbjct: 22 CSFEEAREIFKDAERTKLFWISYSDGDQCASSPC--------QNGGSCKDQLQSY--ICF 71
Query: 946 CKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTE 1005
C + G C+ D C N G C T
Sbjct: 72 CLPAFEGRNCETHKD-----------DQLICVNENG-------------GCEQYCSDHTG 107
Query: 1006 GDHCQVCKAGFFGNALEQNCTECTCN 1031
C G+ A +CT
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVEY 133
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein
complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP:
a.5.2.2 d.43.1.1 d.43.1.1
Length = 291
Score = 34.3 bits (79), Expect = 0.33
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 1582 LTETAGDLAKANDLKRKANLTKAGADSTK----NTVQKIVDVLTEARTAQDMAEVAIQT- 1636
L GDL +A K + + + + T + ++ +L E T + EV +T
Sbjct: 26 LETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTV-LVEVNCETD 84
Query: 1637 --AKDD--ISAARKDLSQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNG 1687
+++ + ++ T + T K L L + AG + G
Sbjct: 85 FVSRNLKFQQLV-QQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPAGPEREG 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.36
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 15/43 (34%)
Query: 1440 EKESKAEELRKHMIILSESNSAKDYA-ETSKKL-INEKEAKAE 1480
EK++ L+K L ++ S K YA +++ L I A E
Sbjct: 18 EKQA----LKK----L-QA-SLKLYADDSAPALAIK---ATME 47
Score = 32.2 bits (72), Expect = 0.71
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 25/50 (50%)
Query: 1708 QKQASGLRSRYQETDNKLLSKAESSGLKRARGQMLL---NKASQLSVNTT 1754
+KQA L K ++S LK L + A L++ T
Sbjct: 18 EKQA--------------LKKLQAS-LK-------LYADDSAPALAIKAT 45
Score = 31.8 bits (71), Expect = 0.95
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 9/32 (28%)
Query: 1526 KQLDEFLN--APGATLADIRNISGLAVNKNIQ 1555
K+L L A + A LA+ ++
Sbjct: 23 KKLQASLKLYADDSAPA-------LAIKATME 47
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN
0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 34.5 bits (78), Expect = 0.37
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 1128 CDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSP 1174
C+C + C G C GV C CA G +G +
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQC-----GV-CS-CAPGRLGRLCESRG 496
Score = 30.7 bits (68), Expect = 4.7
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 1078 PCDCDP-IGSVDVTECNEYT-----GQCQCKSGFGGRQCDQCQTN 1116
CDC+ C++ G C C G GR C + +
Sbjct: 454 LCDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLC-ESRGL 497
Score = 30.7 bits (68), Expect = 5.7
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 13/53 (24%)
Query: 772 ECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCN 824
+C+C T + +C G+ C G C CAPG G + C+
Sbjct: 456 DCNCSDTQPQAPHCSDGQGHLQC-----G-VC-SCAPGRLG------RLCESR 495
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich
domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo
sapiens}
Length = 171
Score = 33.3 bits (75), Expect = 0.41
Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 9/145 (6%)
Query: 348 TKCHFDEAVYNSTGRISGGVCDSCEHNT------EGRNCERCKQY-FYKDPNKEFSDPEV 400
KC + VC C + C C K+ +
Sbjct: 21 DKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTH 80
Query: 401 CLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCE 460
C+C G L+ C + G C C DGF++ ++ C
Sbjct: 81 NRVCECKEGRYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCR 140
Query: 461 PCT-CNIQGTINSQGCNKDTGDCTC 484
T C++ G + +Q N D C
Sbjct: 141 KHTNCSVFGLLLTQKGNATH-DNIC 164
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal
toxic shock S; 3.30A {Streptococcus pyogenes}
Length = 146
Score = 32.5 bits (73), Expect = 0.46
Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 12/150 (8%)
Query: 1229 LVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQRINLARLALNDLTEEI 1288
+V + R +L ++ Q + D + ++ LA++ +++
Sbjct: 1 MVWDRQRLEKELEEKKEALELAIDQA--SRDYHRATALEKELEEKKKALELAIDQASQDY 58
Query: 1289 KKLNKTGEMLKENATLLQ--ENNVEGALELTRQ--AHDTSLKLKEQSTETEKQINDAERQ 1344
+ N + L+ + N + A Q + L +++ E EKQI+DA RQ
Sbjct: 59 NRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQ 118
Query: 1345 CKRTENLVTKTFPQFTQGQEENEKALQRLN 1374
R + + +++ EK L +
Sbjct: 119 SLRRD------LDASREAKKQVEKDLLEHH 142
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding
protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1
g.3.1.1 g.3.1.1
Length = 126
Score = 32.5 bits (73), Expect = 0.47
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 2/85 (2%)
Query: 1097 GQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGV 1156
G C + G+ G + C + + C G C G G
Sbjct: 16 GYCCSQWGYCGTTEEYCGKGCQSQCDYNRCGKEFGGKECHDELCCSQYGWCGNSDGHCGE 75
Query: 1157 RCDTCARGYIGTAPDCSPCGECFDN 1181
C + + C ++
Sbjct: 76 GCQSQCSYW--RCGKDFGGRLCTED 98
Score = 29.4 bits (65), Expect = 4.8
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 2/95 (2%)
Query: 789 GGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYG 848
G C + G + C G + D +C G C G
Sbjct: 15 DGYCCSQWGYCGTTEEYCGKGCQSQCDYNRCGKEFGGKECHDELCCSQYGWCGNSDGHCG 74
Query: 849 RECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTC 883
C + +C D+C S+ G C
Sbjct: 75 EGCQSQCSYWRCGKDFGGRLCTE--DMCCSQYGWC 107
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 33.8 bits (76), Expect = 0.51
Identities = 14/117 (11%), Positives = 25/117 (21%), Gaps = 1/117 (0%)
Query: 1098 QCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVR 1157
QC G + +F+ ++ + G R
Sbjct: 165 QCARTDG-QPLRSSPGGASFYHWGAAVPHSQGDALCRHMCRAIGESFIMKRGDSFLDGTR 223
Query: 1158 CDTCARGYIGTAPDCSPCGECFDNWDSILRGLADQTTKVITDASNIKQTGASGAYTK 1214
C GT C D + + N + G++T
Sbjct: 224 CMPSGPREDGTLSLCVLGSCRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTA 280
Score = 33.4 bits (75), Expect = 0.80
Identities = 41/263 (15%), Positives = 55/263 (20%), Gaps = 39/263 (14%)
Query: 768 HGANECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAP---GTYGFGPEGCKACDCN 824
G C C L +C P P GT + C C
Sbjct: 31 FGPKAVACTFAREHLDMCQAL--SCHTDPLDQSSCSRLLVPLLDGTECGVEKWCSKGRCR 88
Query: 825 HVGALDNICDV------------VSGQCKCRAQTYGRECDQCSPGYWNY----PTCQRCI 868
+ L I V S C T R+C+ P + Q +
Sbjct: 89 SLVELTPIAAVHGRWSSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEM 148
Query: 869 CNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLS 928
CN A C P ++
Sbjct: 149 CNTQACEKTQLEFMSQQC--------ARTDGQPLRSSPGGASFYHWGAAVPHSQGDA--L 198
Query: 929 YADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQE-RGGSCEPCDCSNNTDLALP 987
C+ S + GTRC G GSC C D
Sbjct: 199 CRHMCRAIGESFIMKRGDS-FLDGTRCMPSGPREDGTLSLCVLGSCRTFGCDGRMD---- 253
Query: 988 GNCDTLTGKCLQCRYDTEGDHCQ 1010
+ +C C D +
Sbjct: 254 --SQQVWDRCQVCGGDNSTCSPR 274
Score = 31.1 bits (69), Expect = 3.3
Identities = 32/256 (12%), Positives = 53/256 (20%), Gaps = 44/256 (17%)
Query: 839 QCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCE-- 896
QC+ +G + C+ + CQ C+ ++ DG C
Sbjct: 26 QCR---VAFGPKAVACTFAREHLDMCQALSCHTD---PLDQSSCSRLLVPLLDGTECGVE 79
Query: 897 ------RCINGYYGDPRLGIDIPCRP----CPCPGTVESGLSYADTCQLDPRSQDVICEC 946
RC + P + PC + G+ +PR C
Sbjct: 80 KWCSKGRCRSLVELTPIAAVHGRWSSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRAC 139
Query: 947 KEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEG 1006
+ C C + C G+ L+
Sbjct: 140 -----------------VGADLQAEMCNTQACEKTQLEFMSQQCARTDGQPLRSSPGGAS 182
Query: 1007 DHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKN 1066
+ C +G D C+P
Sbjct: 183 FYHWGAAVPHSQG---DALCRHMCRAIGESFIMKRGDSFLDGTRCMP------SGPREDG 233
Query: 1067 HWKIASGTGCEPCDCD 1082
+ C CD
Sbjct: 234 TLSLCVLGSCRTFGCD 249
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 33.3 bits (77), Expect = 0.55
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 1587 GDLAKA--------NDLKRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAK 1638
GDLAKA + R L S ++ D +A A A+ AK
Sbjct: 67 GDLAKAQAAANIAQLTVNRYQKLLGTQYIS-----KQEYD---QALADAQQANAAVTAAK 118
Query: 1639 DDISAARKDLS 1649
+ AR +L+
Sbjct: 119 AAVETARINLA 129
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative
splicing, coiled coil, SH3 domain, endocytosis,
structural genomics, NPPSFA; 2.49A {Homo sapiens}
Length = 240
Score = 33.2 bits (75), Expect = 0.57
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 22/194 (11%)
Query: 1212 YTKEFELLEKKIEDVKALVENTTRSSHDL----------TVMLTTIDDMKKQIMNNEDPN 1261
EF +E+KI+ +V + + ML T+ ++ Q+ P
Sbjct: 13 LDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQ 72
Query: 1262 GVGKTLGNTTQRINLARLALNDLTEEIKKLNKTGEMLKENATLLQ------ENNVEGALE 1315
T G + L + + L + GE +K A + + L+
Sbjct: 73 ----TEGLLGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQ 128
Query: 1316 LTRQAHDTSLKLKEQSTETEKQINDA--ERQCKRTENLVTKTFPQFTQGQEENEKALQRL 1373
L + + + E + D +R K + V + +F + +E E+++
Sbjct: 129 LLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERSMFNF 188
Query: 1374 NEKITSLEKNLPDL 1387
E L
Sbjct: 189 LENDVEQVSQLAVF 202
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system;
HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 33.8 bits (76), Expect = 0.57
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 10/112 (8%)
Query: 1059 SCDRCLKNHWKIASGT-----GCEPCDCDPIGSVDVTECNEYTGQCQCKSGFG-GRQCDQ 1112
C C ++ S G C D + Q QC F
Sbjct: 19 DCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRC 78
Query: 1113 CQTNFWGNPNVECFP----CDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDT 1160
+ + N + +C DC+ + C Q + G T
Sbjct: 79 LKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILT 130
Score = 31.5 bits (70), Expect = 3.2
Identities = 22/154 (14%), Positives = 31/154 (20%), Gaps = 15/154 (9%)
Query: 417 CDPYTDDVLVSGKCHCKPNVGGRRCD-------MCKDGFWNFNETNPNGCEPCTCNIQGT 469
C P D GG C C + C +
Sbjct: 20 CFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCL 79
Query: 470 INSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPC-----DCDPGASYDN 524
CN GD C + DC S+ E + +
Sbjct: 80 KRHLVCN---GDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQS 136
Query: 525 NCDVISGQCKCKPHASGRTCSTPEQSYYSPPYDN 558
D +C+ +G S Y
Sbjct: 137 VYDASYYGGQCETVYNGEWRELRYDSTCERLYYG 170
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member;
immune regulator, cytokine-cytokine receptor compl; HET:
NAG; 3.50A {Homo sapiens}
Length = 177
Score = 32.6 bits (73), Expect = 0.61
Identities = 25/154 (16%), Positives = 41/154 (26%), Gaps = 12/154 (7%)
Query: 997 CLQCRYDTEGDHCQVCKAGFF-----GNALEQNCTECTCN-ILGIDHSKGPCDRTTGQCP 1050
C + +Y C +C+ G E C C + L + + C + P
Sbjct: 6 CREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDP 65
Query: 1051 CLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQC 1110
L + G C C+ G Q +G C
Sbjct: 66 NLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPG--FGVKQIATGVSDTIC 123
Query: 1111 DQCQTNFW---GNPNVECFPC-DCDPSGSATSQC 1140
+ C F+ + +C P C+ Q
Sbjct: 124 EPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQA 157
Score = 32.6 bits (73), Expect = 0.77
Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 13/141 (9%)
Query: 356 VYNSTGRISGGVCDSCEHNTE------GRNCERCKQYFYKDPNKEFSD--PEVCLRCDCD 407
+ + + C C + +C + K + E C C+
Sbjct: 27 LVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCE 86
Query: 408 PGGSLDDGICDPYTDDVLV---SGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCT- 463
G C+ G V C+ C GF++ + C P T
Sbjct: 87 EGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTS 146
Query: 464 CNIQGTINSQGCNKDTGDCTC 484
C + + Q T D C
Sbjct: 147 CETKDLVVQQAGTNKT-DVVC 166
Score = 31.8 bits (71), Expect = 1.2
Identities = 25/174 (14%), Positives = 43/174 (24%), Gaps = 32/174 (18%)
Query: 803 CDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYP 862
C Y + C C + C + EC C +
Sbjct: 3 PTACREKQYLINSQCCSLCQPGQK---------LVSDCT---EFTETECLPCGESEFLDT 50
Query: 863 TCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGT 922
+ C+ H CD G + + +++ + C G++ PG
Sbjct: 51 WNRETHCHQH-KYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGF 109
Query: 923 VESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPC 976
+ + G T C+ C +F N C P
Sbjct: 110 G-------------------VKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPW 144
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin,
spectrin repeat, three helix bundle, ANKY binding,
disease mutation, structural protein, ZU5 sandwich; 2.75A
{Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 33.4 bits (76), Expect = 0.63
Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 22/223 (9%)
Query: 1560 QIRERANEINNVIKSLTDIDTIL--TETAGDLAKANDLKRK----ANLTKAGADSTKNTV 1613
+ + E +++ + +++ + + E D L+ K A T A + V
Sbjct: 111 HLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNV 170
Query: 1614 QKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQIT----NDLDDA---QQKSNETN 1666
++ L +A + I KD ++ DL ++ L + +
Sbjct: 171 NAFIERLIDAGHS---EAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGA 227
Query: 1667 VKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETDNKLL 1726
+ L+ E+ + + + +A E++V L Q + +L
Sbjct: 228 EILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVAT----RLQ 283
Query: 1727 SKAESSGLKRARGQM--LLNKASQLSVNTTAKLKQLNETEAMF 1767
+ + + + + L + QL +T F
Sbjct: 284 TAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 326
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 32.8 bits (75), Expect = 0.63
Identities = 18/117 (15%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 1596 KRKANLTKAGADSTKNTVQKIVDVLTEARTAQDMAEVAIQTAKDDISAARKDLSQITNDL 1655
K + +A D + ++ ++ + ++ V ++ A + +A + + +L
Sbjct: 4 GEKQVMEQATYDEPER--EQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 1656 DDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQAS 1712
A+ + E K+ ++ R + A D EN + +E+ A+K +
Sbjct: 62 AAAKAQIAELEAKLSEMEHRYLRLYA----------DFENFRRRTRQEMEAAEKYRA 108
>2ga0_A Surface protein VSPA; helical bundle, NI(II) binding sites, immune
system; 2.70A {Borrelia turicatae}
Length = 181
Score = 32.7 bits (74), Expect = 0.66
Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 1221 KKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQRINLARLA 1280
K I D A + S D+ ++ +ID++ K I NG+ + I+ A
Sbjct: 13 KNITDAVAFAK----SVKDVHTLVKSIDELAKAIGKKIGANGLETDADKNAKLISGAYSV 68
Query: 1281 LNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSL-KLKEQSTETEKQIN 1339
++ + ++ L K + + ++G + + A + L K K ++ + K +
Sbjct: 69 ISAVDTKLASLEKKVGISDD---------LKGKITTVKNASTSFLTKAKSKTADLGKD-D 118
Query: 1340 DAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEK 1382
+ K ++ +G EE L +LN I +L
Sbjct: 119 VKDADAKTAIDI--ADTGAKDKGAEE----LIKLNTAIDALLT 155
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 32.3 bits (74), Expect = 0.66
Identities = 14/80 (17%), Positives = 20/80 (25%), Gaps = 24/80 (30%)
Query: 1098 QCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVR 1157
+C C+ GF G+ C+ + C V
Sbjct: 70 ECWCQVGFEGKNCEL---------DATC----------NIKNGRCKQFCKT--GADSKVL 108
Query: 1158 CDTCARGYIGTA--PDCSPC 1175
C +C GY C P
Sbjct: 109 C-SCTTGYRLAPDQKSCKPA 127
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 32.8 bits (74), Expect = 0.73
Identities = 23/132 (17%), Positives = 37/132 (28%), Gaps = 11/132 (8%)
Query: 785 CDQLGGNCVCKPNVVGRRCD----RCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQC 840
C + GN VC C C+ ++ C + D CD
Sbjct: 10 CQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFS-DGHCDSQCNSA 68
Query: 841 KCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCIN 900
C + + + C+ +GH CD C S DG +C +
Sbjct: 69 GCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGH---CDQG---CNSAECEWDGLDCAEHVP 122
Query: 901 GYYGDPRLGIDI 912
L + +
Sbjct: 123 ERLAAGTLVVVV 134
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 31.6 bits (72), Expect = 0.80
Identities = 22/97 (22%), Positives = 28/97 (28%), Gaps = 22/97 (22%)
Query: 1098 QCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCH---------------- 1141
C C GF + C P DCDP+ A+ +C
Sbjct: 25 LCVCAEGFAP-IPHEPHRCQMFCNQTAC-PADCDPNTQASCECPEGYILDDGFICTDIDE 82
Query: 1142 -QNNGTC--VCHQGIGGVRCDTCARGYIGTAPDCSPC 1175
+N G C VCH G C C + C
Sbjct: 83 CENGGFCSGVCHNLPGTFEC-ICGPDSALAGQIGTDC 118
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 29.8 bits (67), Expect = 0.91
Identities = 8/25 (32%), Positives = 8/25 (32%)
Query: 932 TCQLDPRSQDVICECKEGYRGTRCD 956
C C C GY G RC
Sbjct: 19 VCMHIESLDSYTCNCVIGYSGDRCQ 43
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 31.6 bits (72), Expect = 0.98
Identities = 23/101 (22%), Positives = 30/101 (29%), Gaps = 17/101 (16%)
Query: 876 CDSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVES--------GL 927
C+S C+NS CE C + DP I I C TV G
Sbjct: 7 CESSPCINGVCKNSPGSFICE-CSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGA 65
Query: 928 SYADTCQLDPRSQD--------VICECKEGYRGTRCDGCLD 960
+ C + V C +GY + C D
Sbjct: 66 TLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCED 106
Score = 29.6 bits (67), Expect = 5.1
Identities = 26/137 (18%), Positives = 40/137 (29%), Gaps = 38/137 (27%)
Query: 1008 HCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNH 1067
C+ C + + + C E KG C +T C N+
Sbjct: 25 ICE-CSSESTLDPTKTICIETI---------KGTCWQTVIDGRCEINI------------ 62
Query: 1068 WKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGF---GGRQC---DQCQTNFWGNP 1121
+G + C +G+ + C C G+ G QC D+C+
Sbjct: 63 ----NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCK 118
Query: 1122 NVEC------FPCDCDP 1132
N C F C C
Sbjct: 119 NGLCVNTRGSFKCQCPS 135
>3ibp_A Chromosome partition protein MUKB; structural maintenance of
chromosomes, SMC, condensin, chromosome segregation,
hinge, dimerization domain; 3.10A {Escherichia coli}
Length = 302
Score = 32.4 bits (73), Expect = 1.1
Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 1272 QRINLARLALNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQS 1331
++ AR L +E ++L + L + A + +L + +
Sbjct: 10 DSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQ--NSLNQLSEQCGEEFTSSQDV 67
Query: 1332 TETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPDLNE 1389
TE +Q+ + ER+ + + + ++ ++RL++ S ++ L L E
Sbjct: 68 TEYLQQLLEREREAIVERD-------EVGARKNAVDEEIERLSQPGGSEDQRLNALAE 118
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 29.4 bits (66), Expect = 1.2
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 932 TCQLDPRSQDVICECKEGYRGTRC 955
C C C GY G RC
Sbjct: 19 VCMYIEALDKYACNCVVGYIGERC 42
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding,
SH2 domain, transcription REGU signaling protein; 3.21A
{Mus musculus}
Length = 585
Score = 32.9 bits (74), Expect = 1.3
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 10/128 (7%)
Query: 1663 NETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSRYQETD 1722
+ V V + ++ I F + D ENE K L+ Q Q +YQE
Sbjct: 1 SPAGVLVDAMSQKHLQINQRFEELRLITQDTENELKKLQ------QTQEY-FIIQYQE-- 51
Query: 1723 NKLLSKAESSGLKRARGQMLLNKASQLSVNTTAKLKQLNETEAMFNSQESELTELSKNIA 1782
L +A+ + L + Q +++ + L + L EL E +
Sbjct: 52 -SLRIQAQFAQLGQLNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTL 110
Query: 1783 ELQKRIQS 1790
+L ++ Q+
Sbjct: 111 QLLRKQQT 118
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo
sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 31.6 bits (72), Expect = 1.3
Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 23/83 (27%)
Query: 1098 QCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVR 1157
C C GF G+ C+ C + + CH+ V
Sbjct: 64 TCTCLEGFEGKNCEL-------FTRKLCSLDNG-----------DCDQF--CHEEQNSVV 103
Query: 1158 CDTCARGYIGTA--PDCSPCGEC 1178
C +CARGY C P G
Sbjct: 104 C-SCARGYTLADNGKACIPTGPY 125
Score = 31.6 bits (72), Expect = 1.5
Identities = 27/189 (14%), Positives = 43/189 (22%), Gaps = 48/189 (25%)
Query: 1000 CRYDTEGDHCQVCKAGFFGNALEQNCTECTCNILGIDHSKGPCDRTTG--QCPCLPNVIG 1057
C Y+ + + ++ +C + ++G C G C CL G
Sbjct: 17 CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSP---CQNQGKCKDGLGEYTCTCLEGFEG 73
Query: 1058 VSC-----DRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQ 1112
+C C + DC E N C C G+ +
Sbjct: 74 KNCELFTRKLCSLD-----------NGDC---DQFCHEEQNSVV--CSCARGYTLADNGK 117
Query: 1113 CQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDC 1172
C P P C V T + G +
Sbjct: 118 -----------ACIPTGPYP-------C-GKQTLERRK---RSVAQATSSSGEAPDSITW 155
Query: 1173 SPCGECFDN 1181
P +
Sbjct: 156 KPYDAADLD 164
Score = 30.5 bits (69), Expect = 3.9
Identities = 18/162 (11%), Positives = 29/162 (17%), Gaps = 43/162 (26%)
Query: 403 RCDCDPGGSLDDGICDPYTDDVLVSGKC----HCKPNVGGRRCDMCKDGFW-NFNETNPN 457
C C G + C+ +T + C C C G+ N
Sbjct: 64 TCTCLEGFEGKN--CELFTRKLCSLDNGDCDQFCHEEQNSVVCS-CARGYTLADNGKACI 120
Query: 458 GCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCD 517
P C Q +
Sbjct: 121 PTGPYPCGKQTL-----ERRKRSVAQA------------------------------TSS 145
Query: 518 PGASYDNNCDVISGQCKCKPHASGRTCSTPEQSYYSPPYDNF 559
G + D+ P + Q+ +N
Sbjct: 146 SGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 32.7 bits (75), Expect = 1.3
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 22/96 (22%)
Query: 603 LVFEIDNIPTPMDYDIVVRYEPVTNTDW--ENVDVIVEREG-------NVDINGPCGNAV 653
V N P YD+ +T DW V+ ING N+
Sbjct: 145 FVVYDPNDPHLSLYDVDDASTVITIADWYHSLSTVLFPNPNKAPPAPDTTLINGLGRNSA 204
Query: 654 PQDDIKRTRLPVGSRAVKVYPPACLEPGKKYKVHLI 689
+ + V + GK+Y+ ++
Sbjct: 205 NPSAGQLAVVSV-------------QSGKRYRFRIV 227
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 32.4 bits (73), Expect = 1.4
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 1088 DVTECNEYTGQCQ--CKSGFGGRQCDQCQTNFWGNPN-VECFPCD-CDPSGSATSQCHQN 1143
CN G C C+ G QC C T + + C + C G + C +
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCT-CHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 1144 NGT--CVCHQG 1152
G C C G
Sbjct: 61 EGAFQCWCEAG 71
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 31.2 bits (70), Expect = 1.5
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 1432 ETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVFRGITTAKQ 1491
+ S + I +K AEE RK+ E+ K AE + + EE I AK+
Sbjct: 42 DPSLEEIQKKLEAAEERRKYQ----EAELLKHLAEKREHEREVIQKAIEENNNFIKMAKE 97
Query: 1492 ----------ESHAANILA-----KEAYDHAASVRN 1512
E+ A++ A +E HA VR
Sbjct: 98 KLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRK 133
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide
isomerase, PIPE, dorsal-ventral patterning, chaperone,
WIND mutants; 1.75A {Drosophila melanogaster} SCOP:
a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 32.0 bits (72), Expect = 1.5
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 1410 KCGGMWCSNGTLSESNS-AKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAETS 1468
+G + E N K+YA + K + ++ + + +A+ Y
Sbjct: 130 NTPLYIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYM 189
Query: 1469 KKLINE-KEAKAEEVFR-------GITTAKQES--HAANILAK 1501
+K+ + EE R +T AK+E NIL
Sbjct: 190 RKIHEVGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEV 232
>1yjg_A Surface protein VSPA; helical bundle, immune system; 2.22A {Borrelia
turicatae}
Length = 158
Score = 31.4 bits (71), Expect = 1.5
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 19/162 (11%)
Query: 1221 KKIEDVKALVENTTRSSHDLTVMLTTIDDMKKQIMNNEDPNGVGKTLGNTTQRINLARLA 1280
K I D A + S D+ ++ +ID++ K I NG+ + I+ A
Sbjct: 2 KNITDAVAFAK----SVKDVHTLVKSIDELAKAIGKKIGANGLETDADKNAKLISGAYSV 57
Query: 1281 LNDLTEEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQIND 1340
++ + ++ L K + + L+ + + K K ++ + K +
Sbjct: 58 ISAVDTKLASLEKKVGISDD----LKG-KITTV---KNASTSFLTKAKSKTADLGKD-DV 108
Query: 1341 AERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEK 1382
+ K ++ +G EE L +LN I +L
Sbjct: 109 KDADAKTAIDI--ADTGAKDKGAEE----LIKLNTAIDALLT 144
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron
transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Length = 556
Score = 32.5 bits (71), Expect = 1.5
Identities = 54/400 (13%), Positives = 92/400 (23%), Gaps = 33/400 (8%)
Query: 800 GRRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRA-QTYGRECDQCSPGY 858
R A + C AC + A + V + + CRA R + S
Sbjct: 163 FRHVAAKAIAPVNDPQKNCGACHHVYDEAAKKLSWVKNKEDSCRACHGDARVEKKPSLRE 222
Query: 859 WNYPTCQRCICNGHADLCDSKTG--TCISCRNSTD------GENCERCINGYYGDPRLGI 910
+ C C + A + +G +C C + + R G +
Sbjct: 223 AAHTQCITCHRSVAAAPAKADSGPVSCAGCHDPAMQAKFKVVRDVPRLERGQPDAAMVLP 282
Query: 911 DIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYFGNPQERG 970
+ P ++ + + C + C C
Sbjct: 283 VVGPGAKDTPKGMKGAMKPVAFNHKVHEAASNTCRACHHVKIDNCTTCHTLEGVKDG--- 339
Query: 971 GSCEPCDCSNNTDLALPGNCDTLTGKCLQC-RYDTEGDHCQVCKAGFFGNALEQNCTEC- 1028
N + + C+ C + C C A Q C
Sbjct: 340 ---------NFVQIEKAMHQPDSMKSCVGCHNQKVQAPACAGCHGFMKTGAKPQPEAACG 390
Query: 1029 TC-NILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSV 1087
C +K D + + + K P
Sbjct: 391 VCHADPVGMDAKTVADGGLLKATKEQRADVAAATLAARRTTKGTLPADDIPEFVTIGVLS 450
Query: 1088 DVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQ----CHQ- 1142
D E ++ + + D+ F + C C + S T CH
Sbjct: 451 DKYEPSKLPHRKIVNTLMAAIGDDKLAGTFHTDKATVCAGCHHNSPASKTPPKCASCHGQ 510
Query: 1143 ----NNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGEC 1178
G + +C C P + C EC
Sbjct: 511 PFDAAKGDRPGLKAAYHQQCMGCHNRMKLEKPADTACAEC 550
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 32.3 bits (74), Expect = 1.6
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 18/92 (19%)
Query: 602 GLVFEIDNIPTPMDYDIVVRYEPVTNTDWENVDVI-VEREGNVD---INGPCGNAVPQDD 657
+V DN P YD +T DW ++ ++ D ING G V
Sbjct: 123 PMVIYDDNDPHAALYDEDDENTIITLADWYHIPAPSIQGAAQPDATLINGK-GRYVGGPA 181
Query: 658 IKRTRLPVGSRAVKVYPPACLEPGKKYKVHLI 689
+ + + V E GKKY++ LI
Sbjct: 182 AELSIVNV-------------EQGKKYRMRLI 200
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen,
platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB:
3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B*
2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B*
1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Length = 472
Score = 32.2 bits (72), Expect = 1.6
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 1076 CEPCDCDPIGSVDVTECNEYT-----GQCQCKSGFGGRQCD 1111
C+ C C + CN G C+C G+ G QC+
Sbjct: 433 CD-CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
Score = 31.0 bits (69), Expect = 4.0
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 17/122 (13%)
Query: 1048 QCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVT----ECNEYTGQCQCKS 1103
+ LP + +S + N+ I C S + C + +
Sbjct: 358 EVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIK 417
Query: 1104 GFGGRQCDQCQTNFWGNPNVECFPCDC-DPSGSATSQCHQNNGT-----CVCHQGIGGVR 1157
G + + +C C C + + +C+ NGT C C G G +
Sbjct: 418 PVG------FKDSLIVQVTFDC-DCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQ 470
Query: 1158 CD 1159
C+
Sbjct: 471 CE 472
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2
hydrolase, family 89 glycoside hydrolase, mucin
carbohydrate-active enzyme; HET: NDG GAL; 1.90A
{Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A*
2vca_A
Length = 914
Score = 32.3 bits (73), Expect = 1.7
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 115 SWWQSENGVENVTIQLDMEAEFHFTHLIIYFKTFRPAAMLIERSHDFGKTWQ 166
++W+S N I++D+ + + + I+ K I S D G+ +
Sbjct: 54 TYWESSND--YKWIEVDLGGIYELSKIEIFNKDEAVYKYNIYASED-GENFN 102
>1vsg_A Variant surface glycoprotein mitat 1.2; HET: NAG BMA MAN; 2.90A
{Trypanosoma brucei brucei} SCOP: h.4.1.1
Length = 364
Score = 32.3 bits (72), Expect = 1.7
Identities = 54/377 (14%), Positives = 109/377 (28%), Gaps = 43/377 (11%)
Query: 1424 SNSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAETSKKLINEKEAKAEEVF 1483
S D + + + SK +++R + A YAE + AKA +
Sbjct: 18 SEELDDQPKGALFTLQAAASKIQKMRD------AALRASIYAEINH---GTNRAKAAVIV 68
Query: 1484 RGITTAKQESHAANILAKEAYDHAASVRNKTAAYVASTSNITKQLDEFLNAPGATLADIR 1543
K +S + + ++ A+ S + ++DE+LN
Sbjct: 69 ANHYAMKADSGLEALKQTLS--------SQEVTATATASYLKGRIDEYLNL--LLQTKES 118
Query: 1544 NISGLAVNKNIQSNPEQIRERANEINNVIKSLTDIDTILTETAGDLAKANDLKRKANLTK 1603
SG ++ + + + + ++ T A L R+A+
Sbjct: 119 GTSGCMMDTSGTNTVTKAGGTIGGVPCKLQLSPIQPKRPAATYLGKAGYVGLTRQADAAN 178
Query: 1604 AGADSTKN---TVQKIVDVLTEARTAQDMAEVA---IQTAKDDISAARKDLSQITNDLDD 1657
D+ + L ++ +A + A + + L +
Sbjct: 179 NFHDNDAECRLASGHNTNGLGKSGQLSAAVTMAAGYVTVANSQTAVTVQALDALQEASGA 238
Query: 1658 AQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQKQASGLRSR 1717
A Q + K L + +N + + + L +E L +K + S
Sbjct: 239 AHQPWIDAWKAKKALTGA----ETAEFRNETAGIAGKTGVTKLVEEALLKKKDSEA--SE 292
Query: 1718 YQETDNKLLSKAESSGLKRARGQMLLNKASQLSV-------NTTAKLKQLNETEAMFNSQ 1770
Q K S E+ + S+ V N KL +L +
Sbjct: 293 IQTELKKYFSGHENEQWTA-----IEKLISEQPVAQNLVGDNQPTKLGELEGNAKLTTIL 347
Query: 1771 ESELTELSKNIAELQKR 1787
E + L ++
Sbjct: 348 AYYRMETAGKFEVLTQK 364
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 32.1 bits (72), Expect = 1.7
Identities = 26/183 (14%), Positives = 41/183 (22%), Gaps = 36/183 (19%)
Query: 771 NECDCDPTGSTSKYCDQLGGNCVCKPNVVGRRCDRCAPGTYGFGPEGCKACDCNHVGALD 830
NEC + G C + C +G C C G C+ D
Sbjct: 1 NECLDNNGG-----CSHV-----CNDLKIGYEC-LCPDGFQLVAQRRCEDIDE------- 42
Query: 831 NICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNST 890
C CS N +C C L D T C + +
Sbjct: 43 --CQDPDT---------------CSQLCVNLEGGYKCQCEEGFQL-DPHTKACKAVGSIA 84
Query: 891 DGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGY 950
R R +++ ++ D + + +
Sbjct: 85 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 144
Query: 951 RGT 953
G
Sbjct: 145 HGV 147
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.5 bits (74), Expect = 1.9
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 1693 VENEEKNLEKEVALAQKQASGLRSRYQETDNKLLSKAESSGLKRARGQML--------LN 1744
+ E ++++ K + + + + + +LL + L ++G ML LN
Sbjct: 2137 LTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEE-----LNNSQGNMLENDELMVTLN 2191
Query: 1745 KASQLSVNTTAKLKQLNETEAMFNS 1769
+ ++N KL + E F++
Sbjct: 2192 NLKKEAMNIEKKLSESEEFFPQFDN 2216
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer,
chaperone, STRE response; 3.23A {Thermus thermophilus}
Length = 177
Score = 31.1 bits (71), Expect = 1.9
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 1649 SQITNDLDDAQQKSNETNVKVKLLQERLKSIQAGFLQNGRSAMDVENEEKNLEKEVALAQ 1708
+ + DL+ Q++ ++K +E LK ++ +L R D +N K +E+E+ +
Sbjct: 8 NTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYL---RLLADFDNYRKRMEEELKARE 64
Query: 1709 KQAS 1712
++
Sbjct: 65 REGV 68
>2fj8_A BBBI, bowman-BIRK type trypsin inhibitor; all-beta, hydrolase
inhibitor; 1.19A {Hordeum vulgare} SCOP: g.3.13.1 PDB:
1tx6_I 1c2a_A
Length = 125
Score = 30.5 bits (68), Expect = 1.9
Identities = 32/128 (25%), Positives = 39/128 (30%), Gaps = 16/128 (12%)
Query: 851 CDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGI 910
CD+ P C C C TC SC S + C + Y GDP
Sbjct: 10 CDEAVCTRSIPPICT---CMDEVFECPK---TCKSCGPSMGDPSRRICQDQYVGDP---- 59
Query: 911 DIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDG---CLDNYFGNPQ 967
CRP C S TC+ + CK C+D+YFG
Sbjct: 60 GPICRPWECCDKAICTRSNPPTCRCVDEVKKCAPTCKTCLPSRSRPSRRVCIDSYFGPV- 118
Query: 968 ERGGSCEP 975
C P
Sbjct: 119 --PPRCTP 124
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 31.5 bits (72), Expect = 1.9
Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 484 CKRNVEGRDCNQCLPH----FW---GLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCK 536
C ++ G CN P FW GL Y C P + V + C
Sbjct: 68 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVG-CRPYSIPPCEAHVNGARPPCT 126
Query: 537 PHASGRTCSTPEQSYYSPPYDNFLY 561
CS + YSP Y +
Sbjct: 127 GEGDTPKCSKICEPGYSPTYKQDKH 151
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC;
2.10A {Desulfovibrio gigas}
Length = 560
Score = 32.0 bits (70), Expect = 2.0
Identities = 25/217 (11%), Positives = 42/217 (19%), Gaps = 12/217 (5%)
Query: 308 HNTQGLNCEKC---IDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNSTGRIS 364
+ + C C + + V +
Sbjct: 244 TESGPVLCVGCHTAEAQAAWKKTAETPRLFRGQPDATLLVAGAATANGTVDVNWAAAGPG 303
Query: 365 GGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRC----DCDPGGSLDDGICDPY 420
D H NC C + S + C G +
Sbjct: 304 PVAFDHKAHEGFVGNCVTC----HHPTQTGGSLAACGVACHTTTGSKDGNFVTTAQSAHQ 359
Query: 421 TDDVLVSGKCHCKPNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTG 480
CH + C C + N C C T +Q K+
Sbjct: 360 LGVTTSCVGCHTTQANARKECAGCH-APMQKTALSQNSCIQCHEAGFPTSGTQTLGKEER 418
Query: 481 DCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCD 517
+ T + + +D + E D
Sbjct: 419 EATAAKILAAKDEKPKTVPLENVPEKLTLNYMDEKGD 455
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 32.0 bits (72), Expect = 2.1
Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 18/168 (10%)
Query: 24 VTCQLPQPISSCERKSCYPATGNLLIGRENKLRASSTCGLHGNSTFCIVSFLEDKKKCFT 83
V LP + E K+ P G L+ E +
Sbjct: 284 VWPLLPGSFKTLEMKASKP--GWWLLDTEVGEIQRAGMQTPFLIVDRECKMPMGLSTGLI 341
Query: 84 CNSSPRFDNNPAFSHKIHNIVYATVPRTKTISWWQSENGVENVTIQLDMEAEFHFTHLII 143
+S + + + I+ S IQ+DM+ E T +
Sbjct: 342 ADSQIQASEFWGYWEPKLARLNNGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQT 401
Query: 144 ----------YFKTFRPAAMLIERSHDFGKTWQVYRYFAADCAKSFPG 181
Y F + S D K W++++ + F G
Sbjct: 402 QGAKHYLKPYYTTEFC-----VAYSLD-RKNWRIFKGNSTRNVMYFGG 443
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK
structural genomi research consortium, TIM barrel; HET:
PLP; 1.90A {Agrobacterium tumefaciens}
Length = 244
Score = 31.4 bits (72), Expect = 2.1
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 16/68 (23%)
Query: 1335 EKQINDAERQCKRTENL-----VTKTFPQ------FTQGQE---ENEKALQRLNEKITSL 1380
++I D + R V+KTF GQ EN +Q K +L
Sbjct: 14 RQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENR--VQEAQGKWPAL 71
Query: 1381 EKNLPDLN 1388
++ D+
Sbjct: 72 KEKTSDIE 79
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 32.1 bits (71), Expect = 2.1
Identities = 30/259 (11%), Positives = 52/259 (20%), Gaps = 15/259 (5%)
Query: 300 VHGRCECTHNTQGLNCEKCIDFYNDLPWKPAFGSQTNACKQCNCNNHSTKCHFDEAVYNS 359
H + N + + + K+ CH D +
Sbjct: 98 THANLDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHVDVNKKDK 157
Query: 360 TG------RISGGVCDSCEHNTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLD 413
+ C +C + + P L + +
Sbjct: 158 ADHTKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQWPAGRPSHALDYTANIETT-- 215
Query: 414 DGICDPYTDDVLVSGKCHCKPNVGGRRCDMCKDG--FWNFNETNPNGCEPCTCNIQGTIN 471
P + CH N +CD C F P C C +
Sbjct: 216 VWATMPQREVAEGCTMCHTNQN----KCDNCHTRHEFSAAESRKPEACATCHSGVDHNNW 271
Query: 472 SQGCNKDTGDCTCKRNVEGRDCNQCLPHFWGLSESEEYGCKPCDCDPGASYDNNCDVISG 531
G N + + L + C C + Y +N +
Sbjct: 272 EAYTMSKHGKLAEM-NRDKWNWEVRLKDAFSKGGQNAPTCAACHMEYEGEYTHNITRKTR 330
Query: 532 QCKCKPHASGRTCSTPEQS 550
T + S
Sbjct: 331 WANYPFVPGIAENITSDWS 349
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.1 bits (74), Expect = 2.2
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 26/117 (22%)
Query: 1688 RSAMDVENEE------KNLEKEVALAQKQASGLRSRYQETDNKLLS----KAESSGLKRA 1737
R A+ E + K +E E+A ++ + LR+ ++ L + L
Sbjct: 417 REALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHR---LDEV 473
Query: 1738 RGQML-------LNKASQLSVNTTAKL-KQLNETEAMFNSQ---ESELTELSKNIAE 1783
R ++ LN+A++L KL ++ E+TE ++IAE
Sbjct: 474 RREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTE--EDIAE 528
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 32.2 bits (72), Expect = 2.3
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 1/94 (1%)
Query: 1042 CDRTTGQCPCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQC 1101
C +TG C + + ++ + + C P + TG C
Sbjct: 50 CGYSTGACEPIGLQVPPEAVNMSLGLSLASTTSPSQLLACGPTVHHECGRNMYLTGLCFL 109
Query: 1102 KSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGS 1135
Q + D SGS
Sbjct: 110 LGPTQLTQRLPVSRQECPRQEQDIVFL-IDGSGS 142
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil,
alanine, symmetry, axial stagger, BEND, contractIle
protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 29.4 bits (66), Expect = 2.3
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 22/101 (21%)
Query: 1286 EEIKKLNKTGEMLKENATLLQENNVEGALELTRQAHDTSLKLKEQSTETEKQINDAERQC 1345
+ IKK + ++ KENA ++ A + +E+S + E ++ +++
Sbjct: 2 DAIKKKMQMLKLDKENA-------LDRAEQAEADKKAA----EERSKQLEDELVALQKKL 50
Query: 1346 KRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNLPD 1386
K TE+ + + E + A ++L +K D
Sbjct: 51 KGTED-------ELDKYSESLKDAQEKLELA----DKKATD 80
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich
domain, TNF receptor, structural genomics, PSI protein
structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Length = 134
Score = 30.4 bits (68), Expect = 2.4
Identities = 26/109 (23%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 800 GRRCDRCAPGTYGFGPEGCKACD-CNHVGALDNICDVVSGQCKCRA--QTYGRECDQCSP 856
G C+ C PGTY G C C CD G R +T C CSP
Sbjct: 36 GTVCEPCPPGTYIAHLNGLSKCLQCQM-------CDPAMGLRASRNCSRTENAVC-GCSP 87
Query: 857 G-YWNYPTCQRC-ICNGHADLCDSKTGTCISCRNSTDGENCERCINGYY 903
G + C C +A S D C + ++
Sbjct: 88 GHFCIVQDGDHCAACRAYAT-SSPGQRVQKGGTESQDTL-CTGHHHHHH 134
Score = 30.4 bits (68), Expect = 2.5
Identities = 27/153 (17%), Positives = 39/153 (25%), Gaps = 23/153 (15%)
Query: 801 RRCDRCAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWN 860
R C Y G E C C + V C + G C+ C PG +
Sbjct: 1 RSLPSCKEDEYPVGSECCPKCSPGY---------RVKEAC---GELTGTVCEPCPPGTYI 48
Query: 861 YPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLG-IDIPCRPC-P 918
C + + T+ C C G++ + G CR
Sbjct: 49 AHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVC-GCSPGHFCIVQDGDHCAACRAYAT 107
Query: 919 CPGTVESGLSYADTCQLDPRSQDVICE-CKEGY 950
G SQD +C +
Sbjct: 108 SS----PGQRVQKGGT---ESQDTLCTGHHHHH 133
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 31.6 bits (72), Expect = 2.5
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 26/93 (27%)
Query: 611 PTPMDYDIVVRYEPVTNTDW--ENVDVIVER-----EGNVD---ING----PCGNAVPQD 656
P DYD V + DW E+V I + ++ +NG C + +
Sbjct: 188 PATADYDEDVG--VIFLQDWAHESVFEIWDTARLGAPPALENTLMNGTNTFDCSASTDPN 245
Query: 657 DIKRTRLPVGSRAVKVYPPACLEPGKKYKVHLI 689
+ + + G KY++ LI
Sbjct: 246 CVGGGKKFE----LTF------VEGTKYRLRLI 268
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 31.6 bits (71), Expect = 2.7
Identities = 14/83 (16%), Positives = 17/83 (20%), Gaps = 10/83 (12%)
Query: 839 QCKCRAQTYGRECDQCSPGYWNYPTCQRCICNGHADLCDSKTGTCISCRNSTDGENCERC 898
QC T+G E C C R C + T C
Sbjct: 235 QCNL---TFGPEYSVCP----GMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRIC 287
Query: 899 INGYYGDPRLGIDIPCRPCPCPG 921
+ G D G
Sbjct: 288 LQGKCVDKT---KKKYYSTSSHG 307
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 31.5 bits (72), Expect = 2.7
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 19/93 (20%)
Query: 603 LVFEIDNIPTPMDYDIVVRYEPVTNTDWENVDVIVEREGNVD------INGPCGNAVPQD 656
V N P YD+ +T DW +V G I+G V
Sbjct: 125 FVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEMGAGGAITADSTLIDGLGRTHVNVA 184
Query: 657 DIKRTRLPVGSRAVKVYPPACLEPGKKYKVHLI 689
+ + + V E GK+Y++ L+
Sbjct: 185 AVPLSVITV-------------EVGKRYRMRLV 204
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL
AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Length = 160
Score = 30.3 bits (68), Expect = 2.8
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 15/91 (16%)
Query: 538 HASGRTCSTPEQSYYSPPYDNFLYEAENAN----CKTDKCVVEIRQPLGGGNENTWTGPG 593
H + + + + EAEN N +D + GN
Sbjct: 6 HHHHHSSGLVPRGSHMASTASIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAI----- 60
Query: 594 FMKGFENTG--LVFEIDNIPTPMDYDIVVRY 622
+ N G + I + +Y I +
Sbjct: 61 ---NYVNQGDYADYTI-AVAQAGNYTISYQA 87
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 28.2 bits (63), Expect = 2.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 932 TCQLDPRSQDVICECKEGYRGTRCD 956
C+ Q C C EGY G RC+
Sbjct: 20 RCRFVVAEQTPSCVCDEGYIGARCE 44
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor
immunomodulator, TNF alpha receptor; 2.0A {Vaccinia
virus}
Length = 142
Score = 30.1 bits (67), Expect = 2.9
Identities = 24/135 (17%), Positives = 38/135 (28%), Gaps = 17/135 (12%)
Query: 888 NSTDGENCERCINGYY--GDPRLGIDIPCRPCPCPGTVESGLSYADTCQL---DPRSQDV 942
NS + + C+ C G Y D C CP T S + + C + V
Sbjct: 10 NSQELKCCKLCKPGTYSDHRCDKYSDTICGHCP-SDTFTSIYNRSPWCHSCRGPCGTNRV 68
Query: 943 ICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRY 1002
C C N + + G+C C G +
Sbjct: 69 EVTPCTPTTNRIC-HCDSNSYCLLKASDGNCVTCAP----------KTKCGRGYGKKGED 117
Query: 1003 DTEGDHCQVCKAGFF 1017
+ C+ C+ G +
Sbjct: 118 EMGNTICKKCRKGTY 132
Score = 30.1 bits (67), Expect = 3.4
Identities = 17/132 (12%), Positives = 31/132 (23%), Gaps = 16/132 (12%)
Query: 806 CAPGTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNYPTCQ 865
C G + + K C G +C + C C + +
Sbjct: 2 CEQGVSYYNSQELKCCKLCKPG------TYSDHRC---DKYSDTICGHCPSDTFTSIYNR 52
Query: 866 RCICNGHADLCDSKTGTCISCRNSTDGENCERCINGYYGDPRLGID-----IPCRPCPCP 920
C+ C + C +T+ C + Y + P C
Sbjct: 53 SPWCHSCRGPCGTNRVEVTPCTPTTNRI--CHCDSNSYCLLKASDGNCVTCAPKTKCGRG 110
Query: 921 GTVESGLSYADT 932
+ +T
Sbjct: 111 YGKKGEDEMGNT 122
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 31.2 bits (69), Expect = 3.4
Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 2/68 (2%)
Query: 426 VSGKCHCKPNVGGRRCDMCK--DGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCT 483
+SG C C + + P I G GC +
Sbjct: 205 ISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRS 264
Query: 484 CKRNVEGR 491
N G+
Sbjct: 265 LYFNGLGK 272
Score = 30.4 bits (67), Expect = 6.0
Identities = 17/111 (15%), Positives = 27/111 (24%), Gaps = 3/111 (2%)
Query: 1108 RQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIG 1167
Q +G V C S C +G C C G + +
Sbjct: 173 ESSSQKNVPPFGLDGVYI-SEPCPSYCSGHGDC--ISGVCFCDLGYTAAQGTCVSNTPNH 229
Query: 1168 TAPDCSPCGECFDNWDSILRGLADQTTKVITDASNIKQTGASGAYTKEFEL 1218
+ G+ W I G + D ++ G + L
Sbjct: 230 SEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVPL 280
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 31.1 bits (71), Expect = 3.5
Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 27/96 (28%)
Query: 603 LVFEIDNIPTPMDYDIVVRYEPVTNTDW--ENVDVIVEREGNVD---ING----PCGNAV 653
V N P YD+ +T DW + G D ING P +
Sbjct: 124 FVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGGADATLINGKGRAPSDSVA 183
Query: 654 PQDDIKRTRLPVGSRAVKVYPPACLEPGKKYKVHLI 689
+ + V GK+Y+ L+
Sbjct: 184 E-----LSVIKV-------------TKGKRYRFRLV 201
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei phosphorylation,
transport, microtubule; 2.10A {Homo sapiens}
Length = 111
Score = 29.5 bits (66), Expect = 3.8
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 1280 ALNDLTEEIKKLNKTGEMLKE------NATLLQENNVEGALELTRQAHDTSLKLKEQSTE 1333
DL + ++L E LKE + Q + +E L TR + L + E
Sbjct: 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ---LHKYVRE 60
Query: 1334 TEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEKNL 1384
E+ +D ER + T + E+ E+ L + E+ LE L
Sbjct: 61 LEQANDDLERAKRATIVSL-----------EDFEQRLNQAIERNAFLESEL 100
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 30.9 bits (69), Expect = 3.9
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 4/81 (4%)
Query: 1127 PCDCDPSGSATSQCHQNNGTCVCHQGIGGVRCDTCARGYIGTAPDCSPCGECFDNWDSIL 1186
P + QC + C G C C Y G C G +
Sbjct: 2 PLAQQTCANNRHQCSVHAE---CRDYATGFCC-RCVANYTGNGRQCVAEGSPQRVNGKVK 57
Query: 1187 RGLADQTTKVITDASNIKQTG 1207
+ +++V N
Sbjct: 58 GRIFVGSSQVPVVFENTDLHS 78
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily,
viral protein; HET: NAG; 2.65A {Human herpesvirus 1}
SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Length = 167
Score = 30.1 bits (67), Expect = 4.1
Identities = 26/152 (17%), Positives = 36/152 (23%), Gaps = 16/152 (10%)
Query: 882 TCISCRNSTDGENCERCINGYY--GDPRLGIDIPCRPCPCPGTVESGLSYADTCQ--LDP 937
+C E C +C GY C PCP PGT + L+ C
Sbjct: 3 SCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCP-PGTYIAHLNGLSKCLQCQMC 61
Query: 938 RSQDVICECKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKC 997
+ + R + G C C
Sbjct: 62 DPAMGLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYA--------TSSPGQRVQ 113
Query: 998 LQCRYDTEGDHCQVCKAGFFGNALEQNCTECT 1029
+++ CQ C G F EC
Sbjct: 114 KGGT-ESQDTLCQNCPPGTFSP--NGTLEECQ 142
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 31.4 bits (70), Expect = 4.1
Identities = 38/331 (11%), Positives = 74/331 (22%), Gaps = 56/331 (16%)
Query: 880 TGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRS 939
T + R G + + P ++ P C+
Sbjct: 140 TLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPP------NSGGGSPCEAGEEG 193
Query: 940 QDVICE----CKEGYRGTRCDGCLDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTL-- 993
+ +C C CD + G +G + + + +
Sbjct: 194 EGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQS 253
Query: 994 TGKCLQCRYDTEGDHCQVCKAG----FFGNALEQNCTECTCNILGIDHSKGPCDRTTGQC 1049
+ + + T + + G + AL+ N LG +G
Sbjct: 254 SSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVIN-LG-----------SGAF 301
Query: 1050 PCLPNVIGVSCDRCLKNHWKIASGTGCEPCDCDPIGSVDVTECNEYTGQCQCKSG----- 1104
L + + N W + ++ V TG Q
Sbjct: 302 EALVEPVNGKFND---NAWHD-----VKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSD 353
Query: 1105 ----FGG------RQCDQCQTNFWGN-PNVECFPCDCDPSGSATSQCHQNNGTCVCHQGI 1153
GG NF G V D S+ + + G+
Sbjct: 354 DFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLEL---SRLAKQGDPKMKIHGV 410
Query: 1154 GGVRCDTCARGYIGTAPDCSPCGECFDNWDS 1184
+C+ + W++
Sbjct: 411 VAFKCE-NVATLDPITFETPESFISLPKWNA 440
Score = 30.2 bits (67), Expect = 8.6
Identities = 38/258 (14%), Positives = 64/258 (24%), Gaps = 23/258 (8%)
Query: 899 INGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGC 958
I+G D R ++ P A C +P + C++G+ CD
Sbjct: 591 IDGQSKDIRQMAEVQSTAGVKPSCSRE---TAKPCLSNPCKNN--GMCRDGWNRYVCDCS 645
Query: 959 LDNYFGNPQERGGSCEPCDCSNNTDLALPGNCDTLTGKCLQCRYDTEGDHCQVCKAG--- 1015
Y G ER + D S + LP T + R+ ++ + +
Sbjct: 646 GTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAED-VSLRFRSQRAYGILMATTSRD 704
Query: 1016 ---FFGNALEQNCTECTCNILGIDHSKGPCDRTTGQCPCLPNVIGVSCDRCLKNHWKIAS 1072
L+ + T ++ KGP G V R K+
Sbjct: 705 SADTLRLELDAGRVKLT-----VNLGKGPETLFAGYNLNDNEWHTVRVVR-RGKSLKLTV 758
Query: 1073 GTGCEPCDCDPIGSVDVTECNEYTGQCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDP 1132
+ G E + + R +NF G+ F
Sbjct: 759 D-DQQAMTGQMAGDHTRLEFH----NIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYI 813
Query: 1133 SGSATSQCHQNNGTCVCH 1150
Sbjct: 814 DLCKNGDIDYCELNARFG 831
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 30.7 bits (69), Expect = 4.2
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 914 CRPCPCPGTVESGLSYADTCQLDPRSQDVICECKEGYRGTRCDGCLDNYF------GNPQ 967
CP G + + Q V+ C GY+ + + +D + G
Sbjct: 279 GNECPELQPPVHGKIEPSQAKYFFKDQ-VLVSCDTGYKVLKDNVEMDTFQIECLKDGTWS 337
Query: 968 ERGGSCEPCDCSNNTDL 984
+ +C+ + ++L
Sbjct: 338 NKIPTCKKNEIDLESEL 354
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 30.5 bits (69), Expect = 4.9
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 1623 ARTAQDMAEVAIQTAKDDISAARKDLSQITN-DLDDAQQKSNETNVKVKLLQERLKSIQA 1681
+ E + + A+ +DLS L AQ K+++E ++
Sbjct: 22 QTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQ----------KIIKEARDALDI 71
Query: 1682 GFLQNGRSAMDVENEEKNLEK 1702
F +A++V+ E N++K
Sbjct: 72 RFK----TALEVKKERMNVKK 88
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 27.5 bits (61), Expect = 5.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 932 TCQLDPRSQDVICECKEGYRGTRCD 956
TC+ + C C GY G RC+
Sbjct: 20 TCRFLVQEDKPACVCHSGYVGARCE 44
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.3 bits (67), Expect = 5.1
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 15/160 (9%)
Query: 1356 FPQF-------TQGQEENEKA--LQRLNEKITSLEKNLPDLNELICDKRGDPCDNLCGGA 1406
F F + EE+ A L + +I +E D +
Sbjct: 5 FGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIEN---DEGFGAPAGSQGGLAQPGPAS 61
Query: 1407 GCGKCGGMWCSNGTLSESNSAKDYAETSKKLINEKESKAEELRKHMIILSESNSAKDYAE 1466
G + G + E+N D + + + E +RK + D A
Sbjct: 62 GASEDMGATVNGDVFQEANGPAD-GYAAIAQADRLTQEPESIRKWREEQRKRLQELDAAS 120
Query: 1467 TSKKLINEKEAKA--EEVFRGITTAKQESHAANILAKEAY 1504
+ ++AK EE + + +++ N +A +A+
Sbjct: 121 KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 160
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 30.4 bits (69), Expect = 5.6
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 484 CKRNVEGRDCNQCLPH----FW---GLSESEEYGCKPCDCDPGASYDNNCDVISGQCKCK 536
C ++ G CN P FW GL Y C P + V + C
Sbjct: 125 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVG-CRPYSIPPCEHHVNGSRPPCT 183
Query: 537 PHASGRTCSTPEQSYYSPPYDNFLYEAENA 566
CS + YSP Y + N+
Sbjct: 184 GEGDTPKCSKICEPGYSPTYKQDKHYGYNS 213
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic
antibody, FAB fragment, antibody-receptor complex,
cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo
sapiens} PDB: 3thm_F*
Length = 156
Score = 29.4 bits (65), Expect = 6.5
Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 27/125 (21%)
Query: 834 DVVSGQCKCRAQTY---GRECDQCSPGYWNYPTCQRCICNGHADLCDSKT---------G 881
V + + + + C PG C C
Sbjct: 24 TVTTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSS 83
Query: 882 TCISCRNSTDGENCE-------------RCINGYYGDPRLGID-IPCRPCPCPGTVESGL 927
C CR +G E RC ++ + + PC C G ++
Sbjct: 84 KCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE-HGIIKECT 142
Query: 928 SYADT 932
++T
Sbjct: 143 LTSNT 147
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.1 bits (67), Expect = 7.2
Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 1273 RINLARLALNDL---TEEI-------KKLNKTGEMLKENATLLQENNVEGALELTRQAHD 1322
R L R+ + DL T KL + G K+ + +++ E R
Sbjct: 275 REMLIRVNMEDLREQTHTRHYELYRRCKLEEMGF--KDTDPDSKPFSLQETYEAKRNEFL 332
Query: 1323 TSLKLKEQSTETEKQINDAERQCKRTENLVTKTFPQFTQGQEENEKALQRLNEKITSLEK 1382
L+ KE+ E++ + E + +F + ++ ++ ++L +K SL+
Sbjct: 333 GELQKKEEEMRQMFVQRVKEKEAELKEAE-KELHEKFDRLKKLHQDEKKKLEDKKKSLDD 391
Query: 1383 NLPDLNE 1389
+ +
Sbjct: 392 EVNAFKQ 398
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human
herpesvirus 8 type M} PDB: 3pov_A*
Length = 508
Score = 30.1 bits (67), Expect = 7.4
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 809 GTYGFGPEGCKACDCNHVGALDNICDVVSGQCKCRAQTYGRECDQCSPGYWNY 861
G +G + + G L + + KCR Y +C P Y Y
Sbjct: 236 GIFGVSLDFAANVKTDTEGRLQFDPNCKVYEIKCRF-KYTFAKMECDPIYAAY 287
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 28.7 bits (65), Expect = 7.7
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 26/106 (24%)
Query: 944 CECKEGYRGTRCDGCLDNYFGNPQERGGSCEP------CDCSNNTDLALPG----NCDTL 993
C+C +GY G RC+ ++ NP + +C C C PG +C+
Sbjct: 30 CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICM-------PGYEGVHCEVN 82
Query: 994 TGKCL--------QCRYDTEGDHCQVCKAGFFGNALEQNCTECTCN 1031
T +C +C C+ C GF G+ + +
Sbjct: 83 TDECASSPCLHNGRCLDKINEFQCE-CPTGFTGHLCQVDLHHILDA 127
Score = 28.7 bits (65), Expect = 8.8
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 1098 QCQCKSGFGGRQCDQCQTNFWGNPNVECFPCDCDPSGSATSQCHQNNGTCVCHQGIGGVR 1157
QC C G+ G C+ N + EC C +G N C C G G
Sbjct: 67 QCICMPGYEGVHCEV-------NTD-ECASSPCLHNGRCLD--KINEFQCECPTGFTGHL 116
Query: 1158 CDT 1160
C
Sbjct: 117 CQV 119
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 29.7 bits (68), Expect = 8.7
Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 442 DMCKDGFWNFNETNPNG 458
MC D W + E NP G
Sbjct: 324 RMCADH-WRWQENNPRG 339
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 29.7 bits (68), Expect = 9.0
Identities = 5/17 (29%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 442 DMCKDGFWNFNETNPNG 458
+M +D W++ +P G
Sbjct: 320 EMAQDT-WHWQSRHPQG 335
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 29.2 bits (64), Expect = 9.4
Identities = 17/167 (10%), Positives = 29/167 (17%), Gaps = 2/167 (1%)
Query: 374 NTEGRNCERCKQYFYKDPNKEFSDPEVCLRCDCDPGGSLDDGICDPYTDDVLVSGKCHCK 433
C + + C + + C C
Sbjct: 20 QMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCI 79
Query: 434 PNVGGRRCDMCKDGFWNFNETNPNGCEPCTCNIQGTINSQGCNKDTGDCTCKRNVEGRDC 493
D N C + + + +
Sbjct: 80 EGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGE 139
Query: 494 NQCLPHFWGLSES--EEYGCKPCDCDPGASYDNNCDVISGQCKCKPH 538
C +E G C C G ++D +V G H
Sbjct: 140 TACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHHHH 186
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 29.8 bits (68), Expect = 9.5
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 442 DMCKDGFWNFNETNPNG 458
MC+D W + + NP+G
Sbjct: 328 RMCEDL-WRWQKQNPSG 343
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 29.4 bits (65), Expect = 9.6
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 1100 QCKSGFGGRQCD-QCQTNFWGNPNVECFPCDCDPSGSATSQCHQNN-GTCVCHQGIGGVR 1157
C CD C ++ +C +P + +S + C + V
Sbjct: 8 YCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCNTVE 67
Query: 1158 CDTCARGYIGTAPDCSPCGECFDNWD 1183
C G + C C D++
Sbjct: 68 CLFDNFECQGNSKTCKYDKYCADHFK 93
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 27.7 bits (61), Expect = 9.7
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 877 DSKTGTCISCRNSTDGENCERCINGYYGDPRLGIDIPCRPCPCPGTVESGLSYADTCQLD 936
D+ +C DG RC+ + D + P C G + C+++
Sbjct: 9 DTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTC---KDKNGGCAPEAECKMN 65
Query: 937 PRSQDVICECKEGYRGTRCDGCLDNY 962
+++C+C + +G ++
Sbjct: 66 D-KNEIVCKCTKEGSEPLFEGVFCSH 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.422
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 27,279,324
Number of extensions: 1733910
Number of successful extensions: 8775
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5682
Number of HSP's successfully gapped: 1038
Length of query: 1807
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1700
Effective length of database: 3,714,246
Effective search space: 6314218200
Effective search space used: 6314218200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.8 bits)