BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2548
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B5D|X Chain X, Crystal Structure Of The Novel Alpha-Amylase Amyc From
           Thermotoga Maritima
          Length = 528

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 96  YYETVGGGAGASRIQDFAEGGGPNINSGVHSHMTNTRITDAEILETRYPIMLARFGLREG 155
           +Y  +G       I+D+ +  G  IN+G+  H   ++  DA   E  Y I LA   + E 
Sbjct: 261 FYRDIGFDREMEYIKDYIDPSGVRINTGIKYHRITSKSLDASQKEY-YDIDLAMEAVEEH 319

Query: 156 SAGL 159
           +   
Sbjct: 320 ARDF 323


>pdb|2AN1|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
          Kinase From Salmonella Typhimurim Lt2
 pdb|2AN1|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
          Kinase From Salmonella Typhimurim Lt2
 pdb|2AN1|C Chain C, Structural Genomics, The Crystal Structure Of A Putative
          Kinase From Salmonella Typhimurim Lt2
 pdb|2AN1|D Chain D, Structural Genomics, The Crystal Structure Of A Putative
          Kinase From Salmonella Typhimurim Lt2
          Length = 292

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 1  MGNCNAPKSITKSAVMYCLRCMVGYDIPLNQGCLTPIQIKLTPGSIL----NPNDNVAVV 56
          +G+   P ++T   ++Y   C  GY++ + Q     +Q+K  P   L       D   VV
Sbjct: 11 VGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVV 70

Query: 57 GGN 59
          GG+
Sbjct: 71 GGD 73


>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
           Coenzyme A And T-2 Mycotoxin
 pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
           Coenzyme A And Deoxynivalenol
 pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
           Ethyl Coenzyme A
          Length = 451

 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 65  RVVDVILKAFGVAASSQGCMNNITFGDQTWGYYETVGGGAGASRIQDFAEGGGPN----- 119
           R VD    A GV+ +  G + N+T+ + T G       GA ASR++   +          
Sbjct: 291 RAVDA-RPAMGVSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDPASMRQRTRG 349

Query: 120 INSGVHSHMTNTRITDAEILETRYPIMLARFGLREGSAGLGKYSGGSGMIREYVFRKPM 178
           + + +H++   + ++     +    +ML+ +       GL  Y  G G+ +    R+P+
Sbjct: 350 LATYLHNNPDKSNVSLTADADPSTSVMLSSW----AKVGLWDYDFGLGLGKPETVRRPI 404


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,520,305
Number of Sequences: 62578
Number of extensions: 269452
Number of successful extensions: 533
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 5
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)