Query psy2548
Match_columns 207
No_of_seqs 109 out of 829
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:03:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h6b_A Allene oxide cyclase; B 24.9 71 0.0024 25.6 3.9 52 154-205 122-175 (195)
2 2brj_A Arabidopsis thaliana ge 17.0 1.1E+02 0.0036 24.5 3.3 52 154-205 114-168 (188)
3 3gxe_F Collagen alpha-1(I) cha 16.6 68 0.0023 16.9 1.5 12 193-204 4-15 (23)
4 3dhf_A Nicotinamide phosphorib 15.9 59 0.002 29.7 1.8 21 32-53 110-131 (484)
5 3cq1_A Putative uncharacterize 12.3 1.6E+02 0.0055 20.3 3.0 30 11-40 7-39 (103)
6 4i95_A Putative uncharacterize 12.3 91 0.0031 23.8 1.7 29 21-49 19-50 (142)
7 2x4i_A CAG38848, uncharacteriz 11.8 1.3E+02 0.0044 22.1 2.3 36 14-49 49-94 (114)
8 4gyx_A Type III collagen fragm 11.4 1.3E+02 0.0046 16.5 1.7 12 193-204 13-24 (31)
9 3lno_A Putative uncharacterize 10.3 2.3E+02 0.008 19.8 3.3 60 10-76 8-74 (108)
10 2drn_C 24-residues peptide fro 7.5 2.6E+02 0.0089 15.0 1.9 14 61-74 5-18 (26)
No 1
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=24.89 E-value=71 Score=25.57 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=35.0
Q ss_pred cCCCCCCcccCcCcEEEEEEEecC--eEEEEecCCeeeCCCCCCCCCCCCCCCc
Q psy2548 154 EGSAGLGKYSGGSGMIREYVFRKP--MTLCMLTERRVFWPQGLQVLPKQKEPKQ 205 (207)
Q Consensus 154 ~DSgGaGk~RGG~G~~~~~~~~~~--~~~~~~~~r~~~~p~Gl~G~P~~~~~~~ 205 (207)
.=+||-|.|+|-.|.++...+.-+ ...+..-.+-..-|.=|.|.|-..++.-
T Consensus 122 AITGGTGiF~Ga~GqVkl~qiv~pfklfytfyl~gi~~lp~~l~~~~v~p~~~v 175 (195)
T 4h6b_A 122 AITGGSGIFAGCYGQAKLHQIIFPFKLFYTFYLQGIKKLPEALCAPCVPPSPSV 175 (195)
T ss_dssp EEEEESGGGTTCEEEEEEEEEETTTEEEEEEEEESSCCCCGGGCSCCCCCCTTC
T ss_pred EEecCcceEcccEEEEEEeEeeeeeeEEEEEEecccccchHHHhCCCCCCCCCC
Confidence 446999999999999998888766 3333333455555555667766665543
No 2
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=17.01 E-value=1.1e+02 Score=24.47 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=33.6
Q ss_pred cCCCCCCcccCcCcEEEEEEEecC--eEEEEecCCee-eCCCCCCCCCCCCCCCc
Q psy2548 154 EGSAGLGKYSGGSGMIREYVFRKP--MTLCMLTERRV-FWPQGLQVLPKQKEPKQ 205 (207)
Q Consensus 154 ~DSgGaGk~RGG~G~~~~~~~~~~--~~~~~~~~r~~-~~p~Gl~G~P~~~~~~~ 205 (207)
.=+||-|.|+|--|.++.-.+.-+ ..++..-.+-+ .-|.=|.|.|-..++.-
T Consensus 114 AITGGTGif~gA~G~Vkl~~i~~P~k~~yTf~L~gi~~~lp~~l~~~~v~p~~~v 168 (188)
T 2brj_A 114 AITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDI 168 (188)
T ss_dssp EEEEEEETTTTCEEEEEEEEEETTTEEEEEEEEECCSSCCCGGGCSCCCCCCTTC
T ss_pred eEecCcceEcceEEEEEEEeeccCceEEEEEEEecCcccCcHHHhCCCCCCCCCC
Confidence 446999999999999987777644 33333333333 33555567776666543
No 3
>3gxe_F Collagen alpha-1(I) chain; protein-peptide complex, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3gxe_E*
Probab=16.56 E-value=68 Score=16.88 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCC
Q psy2548 193 GLQVLPKQKEPK 204 (207)
Q Consensus 193 Gl~G~P~~~~~~ 204 (207)
|+.|.||.++.+
T Consensus 4 G~pG~pG~KG~r 15 (23)
T 3gxe_F 4 GTAGLXGMKGHR 15 (26)
T ss_pred CCCCCCCCCCCc
Confidence 444444444433
No 4
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=15.88 E-value=59 Score=29.72 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=17.7
Q ss_pred eeeeceEEE-cCCCccccCCCCC
Q psy2548 32 GCLTPIQIK-LTPGSILNPNDNV 53 (207)
Q Consensus 32 G~~rpi~v~-~PeGtivnp~~Pa 53 (207)
|.| |++|+ +||||+|.|..|-
T Consensus 110 ~~~-~~~I~A~pEGt~v~~~~Pl 131 (484)
T 3dhf_A 110 GHL-PIEIKAVPEGFVIPRGNVL 131 (484)
T ss_dssp TCC-CEEEEECCTTCEEETTSCC
T ss_pred CCC-ceEEEEECCCccccCCCcE
Confidence 444 99999 5999999999984
No 5
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=12.32 E-value=1.6e+02 Score=20.32 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---eeeeceEEE
Q psy2548 11 TKSAVMYCLRCMVGYDIPLNQ---GCLTPIQIK 40 (207)
Q Consensus 11 t~~a~~~~~~~~l~pdip~N~---G~~rpi~v~ 40 (207)
+...+.-+|+...||+++.|= |+.+-|+|.
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~ 39 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE 39 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEE
Confidence 456788899999999999865 999998886
No 6
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=12.30 E-value=91 Score=23.83 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.0
Q ss_pred HHhcCCCCCCceeeec---eEEEcCCCccccC
Q psy2548 21 CMVGYDIPLNQGCLTP---IQIKLTPGSILNP 49 (207)
Q Consensus 21 ~~l~pdip~N~G~~rp---i~v~~PeGtivnp 49 (207)
|...++.|-+-|.+.| ++|+-..|+++|=
T Consensus 19 C~y~s~~pd~~g~L~psn~lKIlSdDgtF~Ni 50 (142)
T 4i95_A 19 CHYVSENPDIPGVLKPSNTFKVLSDDGRIVNF 50 (142)
T ss_dssp EEEECSSTTSCCEEEEEEEEEEECTTSEEEEE
T ss_pred EEEecCCCCCceEeccCccEEEEcCCCcEEEE
Confidence 5667889999999998 8999999999985
No 7
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=11.80 E-value=1.3e+02 Score=22.15 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCCCCceeee----------ceEEEcCCCccccC
Q psy2548 14 AVMYCLRCMVGYDIPLNQGCLT----------PIQIKLTPGSILNP 49 (207)
Q Consensus 14 a~~~~~~~~l~pdip~N~G~~r----------pi~v~~PeGtivnp 49 (207)
+....+..+++-.+|.|-..++ -|.-++|||+++++
T Consensus 49 sTA~lls~Llg~~ip~NR~~i~~~~GD~alv~~L~~Rl~EG~vl~~ 94 (114)
T 2x4i_A 49 STIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQISQRLEEGKILTL 94 (114)
T ss_dssp HHHHHHHHHHCCCCCCCCCCCCBCTTCEEEEEEEC-------CCCH
T ss_pred HHHHHHHHHhCCCccccceeEEecCCCEEEEEEecccCCCCccCCH
Confidence 3445677888989998876543 35566899998876
No 8
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=11.40 E-value=1.3e+02 Score=16.48 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCC
Q psy2548 193 GLQVLPKQKEPK 204 (207)
Q Consensus 193 Gl~G~P~~~~~~ 204 (207)
|+.|.||..++.
T Consensus 13 gvmgfpgppgpp 24 (31)
T 4gyx_A 13 GVMGFPGPPGPP 24 (31)
T ss_dssp CCCCCCCCCCCC
T ss_pred ccccCCCCCCCC
Confidence 566666666553
No 9
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=10.27 E-value=2.3e+02 Score=19.76 Aligned_cols=60 Identities=7% Similarity=0.095 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCC---ceeeeceEEEcCCCcc-c--cCCCCCcccccchhhHHHHHHHHHHHH-Hh
Q psy2548 10 ITKSAVMYCLRCMVGYDIPLN---QGCLTPIQIKLTPGSI-L--NPNDNVAVVGGNVQTSQRVVDVILKAF-GV 76 (207)
Q Consensus 10 ~t~~a~~~~~~~~l~pdip~N---~G~~rpi~v~~PeGti-v--np~~Pa~v~~~~~~~~~~v~~ai~~Al-~~ 76 (207)
.+...++-+|+...||+++.| -|+.+-|+|. ..|.+ + ...+|+ |. ....+.+.|-+|| ..
T Consensus 8 ~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~-~~~~V~V~ltlt~p~----cp--~~~~i~~~i~~al~~~ 74 (108)
T 3lno_A 8 AFENKLYANLEAVIDPELGVDIVNLGLVYDVTAD-ENNNAVITMTMTSIG----CP--MAGQIVSDVKKVLSTN 74 (108)
T ss_dssp HHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEEC-TTCCEEEEECCSCTT----CT--THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEEC-CCCeEEEEEEECCCC----Cc--HHHHHHHHHHHHHHHh
Confidence 466778888999999999987 6999998885 22432 2 333443 22 2234566677777 44
No 10
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=7.49 E-value=2.6e+02 Score=14.99 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHH
Q psy2548 61 QTSQRVVDVILKAF 74 (207)
Q Consensus 61 ~~~~~v~~ai~~Al 74 (207)
+++.|++|++.+-.
T Consensus 5 EaA~RIVdaVi~qv 18 (26)
T 2drn_C 5 EAASRIVDAVIEQV 18 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46678899887654
Done!