Query psy2548
Match_columns 207
No_of_seqs 109 out of 829
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 19:03:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2548.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2548hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b9wa1 g.3.11.4 (A:1-45) Mero 62.3 1.4 0.0001 25.8 1.2 15 23-37 8-22 (45)
2 d1ob1c1 g.3.11.4 (C:1-45) Mero 58.5 1.7 0.00012 25.5 1.1 15 23-37 8-22 (45)
3 d2i14a2 d.41.2.1 (A:1-110) Nic 22.8 31 0.0023 23.3 3.2 19 36-54 70-89 (110)
4 d2j85a1 d.321.1.1 (A:2-116) Hy 11.6 41 0.003 23.1 1.3 37 14-50 52-98 (115)
5 d2j6ba1 d.321.1.1 (A:1-109) Af 10.6 52 0.0038 22.4 1.6 37 14-50 47-93 (109)
6 d2hv2a1 d.106.1.4 (A:287-397) 8.8 47 0.0034 22.0 0.8 14 22-35 23-36 (111)
7 d1oiga_ g.3.18.1 (A:) Dumpy {F 8.1 49 0.0036 16.3 0.5 14 21-34 4-17 (26)
8 d2f7fa2 d.41.2.1 (A:4-140) Put 7.5 2.5E+02 0.018 18.8 4.4 24 37-60 94-118 (137)
9 d2ae8a2 d.14.1.9 (A:85-179) Im 6.2 1.4E+02 0.01 19.5 2.2 13 64-76 74-86 (95)
10 d1a0ia1 b.40.4.6 (A:241-349) A 6.2 99 0.0072 20.8 1.4 21 29-49 20-40 (109)
No 1
>d1b9wa1 g.3.11.4 (A:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]}
Probab=62.34 E-value=1.4 Score=25.82 Aligned_cols=15 Identities=20% Similarity=0.589 Sum_probs=12.7
Q ss_pred hcCCCCCCceeeece
Q psy2548 23 VGYDIPLNQGCLTPI 37 (207)
Q Consensus 23 l~pdip~N~G~~rpi 37 (207)
++-++|.|+||||-+
T Consensus 8 i~T~~P~NAgC~Ry~ 22 (45)
T d1b9wa1 8 IDTNVPENAACYRYL 22 (45)
T ss_dssp SSCCCCTTEEEEECT
T ss_pred eccCCCCCcceeEec
Confidence 467899999999964
No 2
>d1ob1c1 g.3.11.4 (C:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=58.46 E-value=1.7 Score=25.47 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=12.7
Q ss_pred hcCCCCCCceeeece
Q psy2548 23 VGYDIPLNQGCLTPI 37 (207)
Q Consensus 23 l~pdip~N~G~~rpi 37 (207)
++-++|.|+||||-+
T Consensus 8 i~T~~P~NagCfRyl 22 (45)
T d1ob1c1 8 VKKQCPQNSGCFRHL 22 (45)
T ss_dssp CSCCCCTTEEEECCT
T ss_pred cccCCCcCcceeEec
Confidence 466899999999965
No 3
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}
Probab=22.78 E-value=31 Score=23.31 Aligned_cols=19 Identities=26% Similarity=0.707 Sum_probs=15.5
Q ss_pred ceEEE-cCCCccccCCCCCc
Q psy2548 36 PIQIK-LTPGSILNPNDNVA 54 (207)
Q Consensus 36 pi~v~-~PeGtivnp~~Pa~ 54 (207)
.++|. +|||+++.|..|-=
T Consensus 70 ~~~i~a~~EG~~v~~~ePvl 89 (110)
T d2i14a2 70 PVNVYAMPEGTIFHPYEPVL 89 (110)
T ss_dssp SEEEEECCTTCEECTTSCSE
T ss_pred ceEEEEcCCCCEecCCCCEE
Confidence 45777 49999999999853
No 4
>d2j85a1 d.321.1.1 (A:2-116) Hypothetical protein B116 {Sulfolobus turreted icosahedral virus, STIV [TaxId: 269145]}
Probab=11.59 E-value=41 Score=23.14 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCCCCceeeec----------eEEEcCCCccccCC
Q psy2548 14 AVMYCLRCMVGYDIPLNQGCLTP----------IQIKLTPGSILNPN 50 (207)
Q Consensus 14 a~~~~~~~~l~pdip~N~G~~rp----------i~v~~PeGtivnp~ 50 (207)
+....+..+++-++|.|-..++. |.-++|||.|++++
T Consensus 52 aTAqlls~llgv~i~~NRi~i~~~~gD~alv~~L~~Rl~EG~Vl~~~ 98 (115)
T d2j85a1 52 STINLVNTLCGTQLQKNRVEVKMNEGDEALIIMISQRLEEGKVLSDK 98 (115)
T ss_dssp HHHHHHHHHHCCCCCCCCCCCCBCTTCEEEEEEESSCCCSSCCCCHH
T ss_pred HHHHHHHHHhCCCcCcCceEEEecCCCEEEEEEecccCCCCcCcCHH
Confidence 34456778888899998776543 34457889888653
No 5
>d2j6ba1 d.321.1.1 (A:1-109) Afv3-109 {Acidianus filamentous virus 1 [TaxId: 235266]}
Probab=10.64 E-value=52 Score=22.37 Aligned_cols=37 Identities=19% Similarity=0.435 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCCCCCceeeec----------eEEEcCCCccccCC
Q psy2548 14 AVMYCLRCMVGYDIPLNQGCLTP----------IQIKLTPGSILNPN 50 (207)
Q Consensus 14 a~~~~~~~~l~pdip~N~G~~rp----------i~v~~PeGtivnp~ 50 (207)
+....+..+++-++|.|-..++. |.-++|||.+++++
T Consensus 47 aTAqlls~Llgv~i~~NR~~i~~~~gDkal~~~L~~Rl~EG~Vl~t~ 93 (109)
T d2j6ba1 47 ATAELLSSILGVNVPMNRVQIKVTHGDRILAFMLKQRLPEGVVVKTT 93 (109)
T ss_dssp HHHHHHHHHHTSCCCBCCCCCCBCTTCEEEEEEESSCCCTTCCCCCH
T ss_pred HHHHHHHHHhCcccccceeEEEecCCCEEEEEEecccCCCCcccccH
Confidence 44566778889999998765542 33346888887653
No 6
>d2hv2a1 d.106.1.4 (A:287-397) Hypothetical protein EF1021 {Enterococcus faecalis [TaxId: 1351]}
Probab=8.75 E-value=47 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=11.7
Q ss_pred HhcCCCCCCceeee
Q psy2548 22 MVGYDIPLNQGCLT 35 (207)
Q Consensus 22 ~l~pdip~N~G~~r 35 (207)
+.||-+|+|.|.|+
T Consensus 23 V~D~~~~~N~G~~~ 36 (111)
T d2hv2a1 23 IEDSYGPWNEGIWT 36 (111)
T ss_dssp EECTTCGGGCEEEE
T ss_pred EeCCCCcccCcEEE
Confidence 35788999999996
No 7
>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.10 E-value=49 Score=16.34 Aligned_cols=14 Identities=43% Similarity=1.018 Sum_probs=10.3
Q ss_pred HHhcCCCCCCceee
Q psy2548 21 CMVGYDIPLNQGCL 34 (207)
Q Consensus 21 ~~l~pdip~N~G~~ 34 (207)
|.++.|-|.|..|.
T Consensus 4 cvl~sdcpsn~acv 17 (26)
T d1oiga_ 4 CVLNSDCPSNQACV 17 (26)
T ss_dssp CCSSTTSSTTCEEC
T ss_pred eeEcCCCCccHhHh
Confidence 45778888887764
No 8
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}
Probab=7.51 E-value=2.5e+02 Score=18.84 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=16.8
Q ss_pred eEEE-cCCCccccCCCCCcccccch
Q psy2548 37 IQIK-LTPGSILNPNDNVAVVGGNV 60 (207)
Q Consensus 37 i~v~-~PeGtivnp~~Pa~v~~~~~ 60 (207)
.+|. .|||+++-|..|-=...+.+
T Consensus 94 ~~i~av~EG~~v~~~ep~l~I~Gp~ 118 (137)
T d2f7fa2 94 CTVRSALEGDLVFNNEPLIQIEGPL 118 (137)
T ss_dssp CEEEECCTTCEECTTSCSEEEEEEH
T ss_pred ceEEEecCCccccCCeEEEEEEEcH
Confidence 3444 69999999999864433554
No 9
>d2ae8a2 d.14.1.9 (A:85-179) Imidazole glycerol phosphate dehydratase {Staphylococcus aureus [TaxId: 1280]}
Probab=6.18 E-value=1.4e+02 Score=19.46 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHh
Q psy2548 64 QRVVDVILKAFGV 76 (207)
Q Consensus 64 ~~v~~ai~~Al~~ 76 (207)
+.++++++|||++
T Consensus 74 HHi~Ea~FKa~ar 86 (95)
T d2ae8a2 74 HHEIEAIFKAFSR 86 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5678889998874
No 10
>d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]}
Probab=6.17 E-value=99 Score=20.78 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.6
Q ss_pred CCceeeeceEEEcCCCccccC
Q psy2548 29 LNQGCLTPIQIKLTPGSILNP 49 (207)
Q Consensus 29 ~N~G~~rpi~v~~PeGtivnp 49 (207)
.|+|-.--++|.+..|++||+
T Consensus 20 ANeGkViGf~VlLE~G~vV~A 40 (109)
T d1a0ia1 20 ANEGKVIGFEVLLESGRLVNA 40 (109)
T ss_dssp SSCSSCCEEEEECTTSCEEEE
T ss_pred ccCccEEEEEEEecCCcEEec
Confidence 699999999999999999986
Done!