RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2548
(207 letters)
>gnl|CDD|215358 PLN02666, PLN02666, 5-oxoprolinase.
Length = 1275
Score = 307 bits (788), Expect = 2e-97
Identities = 120/195 (61%), Positives = 146/195 (74%), Gaps = 12/195 (6%)
Query: 2 GNCNAPKSITKSAVMYCLRCMVGYDIPLNQGCLTPIQIKLTPGSILNPNDNVAVVGGNVQ 61
GN NAP ++T +AV+YCLRC+V DIPLNQGCL P+ I++ PGS L+P+D AVVGGNV
Sbjct: 1039 GNWNAPPAVTAAAVIYCLRCLVDVDIPLNQGCLAPVTIRIPPGSFLSPSDKAAVVGGNVL 1098
Query: 62 TSQRVVDVILKAFGVAASSQGCMNNITFGDQTWGYYETVGGGAGASRIQDFAEGGGPNIN 121
TSQRV DV+L AF A SQGCMNN+TFGD T+GYYET+ GGAGA GP +
Sbjct: 1099 TSQRVTDVVLTAFQACACSQGCMNNLTFGDDTFGYYETIAGGAGA----------GPTWD 1148
Query: 122 --SGVHSHMTNTRITDAEILETRYPIMLARFGLREGSAGLGKYSGGSGMIREYVFRKPMT 179
SGV HMTNTRITD EILE RYP++L RFGLREGS G G + GG G++RE FR+P+T
Sbjct: 1149 GTSGVQCHMTNTRITDPEILERRYPVLLHRFGLREGSGGDGLHRGGDGVVREIEFRRPVT 1208
Query: 180 LCMLTERRVFWPQGL 194
+ +L+ERRV P+GL
Sbjct: 1209 VSILSERRVHAPRGL 1223
>gnl|CDD|223224 COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 563
Score = 242 bits (620), Expect = 9e-78
Identities = 105/204 (51%), Positives = 129/204 (63%), Gaps = 19/204 (9%)
Query: 2 GNCNAPKSITKSAVMYCLRCMVGYDIPLNQGCLTPIQIKLTPGSILNPNDNVAVVGGNVQ 61
G NAP ++T SAV+Y LR ++ DIPLN GCL PI+I G+ LNP AVVGGNV+
Sbjct: 277 GPFNAPLAVTLSAVLYALRSLLDPDIPLNAGCLRPIEIIAPEGTWLNPRYPAAVVGGNVE 336
Query: 62 TSQRVVDVILKAFGVA------ASSQGCMNNITFGDQT-----WGYYETVGGGAGASRIQ 110
TSQR+ DVI A A A+SQG MNN+TFG + YYET+GGG+GA +
Sbjct: 337 TSQRIADVIFGALAQAAPGRVPAASQGTMNNVTFGGINQKGRGFAYYETIGGGSGAGPGK 396
Query: 111 DFAEGGGPNINSGVHSHMTNTRITDAEILETRYPIMLARFGLREGSAGLGKYSGGSGMIR 170
D GVH+HMTNTR T EILE RYP++L F LREGS G GKY GG G++R
Sbjct: 397 DGL--------DGVHTHMTNTRNTPIEILERRYPVLLEAFSLREGSGGAGKYRGGDGIVR 448
Query: 171 EYVFRKPMTLCMLTERRVFWPQGL 194
+ +P TL +L+ERR F P GL
Sbjct: 449 AFRVLEPATLTILSERRRFPPWGL 472
>gnl|CDD|217092 pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase. This
family includes N-methylhydaintoinase B which converts
hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase
EC:3.5.2.9 which catalyzes the formation of L-glutamate
from 5-oxo-L-proline. These enzymes are part of the
oxoprolinase family and are related to pfam01968.
Length = 527
Score = 226 bits (579), Expect = 5e-72
Identities = 104/199 (52%), Positives = 134/199 (67%), Gaps = 14/199 (7%)
Query: 2 GNCNAPKSITKSAVMYCLRCMVGYDIPLNQGCLTPIQIKLTPGSILNPNDNVAVVGGNVQ 61
N NAP+++T SAV+Y LR +VG DIPLN GCL P+QI + GS+LNP AVV GNV+
Sbjct: 279 HNFNAPQAVTNSAVLYALRTLVGPDIPLNDGCLRPLQIIIPKGSLLNPRRPAAVVAGNVE 338
Query: 62 TSQRVVDVILKAFGVAASSQGCMNNITFGD------QTWGYYETVGGGAGASRIQDFAEG 115
TSQR+VDVI KA V A+SQG MNN+TFG + + YYET+GGG+GA G
Sbjct: 339 TSQRIVDVIYKALYVPAASQGTMNNVTFGGGGNQDGEAFQYYETIGGGSGA--------G 390
Query: 116 GGPNINSGVHSHMTNTRITDAEILETRYPIMLARFGLREGSAGLGKYSGGSGMIREYVFR 175
G N VH+HMTNTR+TD E+LE RYP++L F +R GS G GKY GG+G++R F
Sbjct: 391 DGLNGADAVHTHMTNTRMTDIEVLEMRYPVLLLEFSIRAGSGGAGKYRGGNGIVRMVKFL 450
Query: 176 KPMTLCMLTERRVFWPQGL 194
+T+ +L+ RR P G+
Sbjct: 451 HDVTVSILSNRRRISPWGM 469
>gnl|CDD|178128 PLN02512, PLN02512, acetylglutamate kinase.
Length = 309
Score = 28.9 bits (65), Expect = 1.9
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 115 GGGPNINS-----GVHSHMTN-TRITDAEILE 140
GGGP INS G+ N R+TDAE +E
Sbjct: 87 GGGPEINSWLKKVGIEPQFKNGLRVTDAETME 118
>gnl|CDD|182944 PRK11070, PRK11070, ssDNA exonuclease RecJ; Provisional.
Length = 575
Score = 28.1 bits (63), Expect = 3.2
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 18/67 (26%)
Query: 106 ASRIQD--------FAEGGGPNINSGVHS----HMTNTRITDA-EILETRYPIMLARFGL 152
ASRI++ FA G + S HM DA E L+T YP ++ +FG
Sbjct: 372 ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR-----DALERLDTLYPGLILKFGG 426
Query: 153 REGSAGL 159
+AGL
Sbjct: 427 HAMAAGL 433
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Provisional.
Length = 2836
Score = 28.0 bits (62), Expect = 4.4
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 24 GYDIPLNQGCLTPIQIKLTPGSILNPNDNVAVVGGNVQTSQRVV--------------DV 69
GYD+P QG +++ + L P D +A GN RVV D+
Sbjct: 1060 GYDLP--QGVSMSVKVFIAVKHSLQPGDKMAGRHGNKGVISRVVPVEDMPYLEDGTPVDI 1117
Query: 70 ILKAFGVAA 78
IL GV +
Sbjct: 1118 ILNPLGVPS 1126
>gnl|CDD|223269 COG0191, Fba, Fructose/tagatose bisphosphate aldolase [Carbohydrate
transport and metabolism].
Length = 286
Score = 27.5 bits (62), Expect = 4.6
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 119 NINSGVHSHMTNTRITDAEILETRYPIMLARFGLREGSAGLGKYSGGSGMIREYV 173
NIN+ + AE E + P+++ S G KY+GG+ + V
Sbjct: 24 NINN---LETLQAILEAAE--EEKSPVIIQ------FSEGAAKYAGGADSLAHMV 67
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 27.6 bits (62), Expect = 5.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 53 VAVVGGNVQTSQRVVDVILK------AFGVA 77
+A V G Q +RV DVIL+ AFG A
Sbjct: 110 IAAVSGGGQKVERVKDVILQSNPLLEAFGNA 140
>gnl|CDD|212158 cd11613, SAF_AH_GD, Domains similar to fish antifreeze type III
protein. Altronate dehydratase (EC 4.2.1.7) converts
D-altronate into 2-dehydro-3-deoxy-D-gluconate and is
part of a bacterial pathway for the degradation of
D-galacturonate. D-galactarate dehydratase (EC
4.2.1.42) eliminates water from D-galactarate to yield
5-dehydro-4-deoxy-D-glucarate, initializing the
degradation of D-galactarate. The function of the SAF
domain in these enzymes is not clear. It may
participate in dimerization.
Length = 80
Score = 25.9 bits (58), Expect = 6.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 46 ILNPNDNVAVV 56
L+P DNVAV
Sbjct: 4 KLHPKDNVAVA 14
>gnl|CDD|217690 pfam03718, Glyco_hydro_49, Glycosyl hydrolase family 49. Family of
dextranase (EC 3.2.1.11) and isopullulanase (EC
3.2.1.57). Dextranase hydrolyses alpha-1,6-glycosidic
bonds in dextran polymers.
Length = 566
Score = 27.5 bits (61), Expect = 6.2
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 37 IQIKLTPGSILNPNDNVAVVGGNVQTSQRVVDVILKAFGVAASSQGCMNNITFGDQTWGY 96
++I LT GS + D V + + + +VD V S+ G ++ F +
Sbjct: 97 VKISLTTGSSIGSPDQVVIRPSSYNFEKSLVDAGTVRIKVPYSANGYRFSVEFEPDLYTA 156
Query: 97 YETVGG--GAGASRIQD--------FAEGGGPNINSGVHSHMT 129
Y + G +G S I FA P + S + MT
Sbjct: 157 YNDMSGYVTSGGSVIHTEPRNALMIFAS---PFLPSRLIPTMT 196
>gnl|CDD|179615 PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.
Length = 274
Score = 26.9 bits (60), Expect = 7.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 182 MLTERRVFWPQGLQVLP 198
M TE V +P G+ ++P
Sbjct: 168 MSTECLVVFPDGVGIVP 184
>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This
family describes YqeH, a member of a larger family of
GTPases involved in ribosome biogenesis. Like YqlF, it
shows a cyclical permutation relative to GTPases EngA
(in which the GTPase domain is duplicated), Era, and
others. Members of this protein family are found in a
relatively small number of bacterial species, including
Bacillus subtilis but not Escherichia coli [Protein
synthesis, Other].
Length = 360
Score = 26.8 bits (60), Expect = 8.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 6 APKSITKSAVMYCLRC 21
PKS + +YC RC
Sbjct: 19 TPKSALEKEEVYCQRC 34
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.419
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,349,134
Number of extensions: 962288
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 19
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)