RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2548
         (207 letters)



>d1j8ra_ b.2.3.3 (A:) PapG adhesin receptor-binding domain
          {Escherichia coli [TaxId: 562]}
          Length = 196

 Score = 25.3 bits (55), Expect = 4.5
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 50 NDNVAVVGGNVQTSQRVVDVILKAFGVAASSQGCMNNITFGDQTWGYYE 98
           D  +  GGNV  +QR   +     G+A  +    N   F D  W YY 
Sbjct: 10 GDVNSYQGGNVVITQRPQFITSWRPGIATVTWNQCNGPEFADGFWAYYR 58


>d1ogmx1 b.133.1.1 (X:3-201) Dextranase, N-terminal domain
           {Penicillium minioluteum [TaxId: 28574]}
          Length = 199

 Score = 24.7 bits (53), Expect = 8.6
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 37  IQIKLTPGSILNPNDNVAVVGGNVQTSQRVVDVILKAFGVAASSQGCMNNITFGDQTWGY 96
           ++I  T GS L    +V +   ++  +    D       V A + G   ++ F    + +
Sbjct: 110 VKILATDGSSLGSPSDVVIRPVSISYAISQSDDGGIVIRVPADANGRKFSVEFKTDLYTF 169

Query: 97  Y----ETVGGGAGASRIQ 110
                E V  G     ++
Sbjct: 170 LSDGNEYVTSGGSVVGVE 187


>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio
           mixtus [TaxId: 39650]}
          Length = 131

 Score = 24.2 bits (52), Expect = 9.1
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 88  TFGDQTWGYYE-TVGGGAGASRIQDFAEGGGPNINS 122
           T G QTW   + TV   AG+ +    A  GG N+N 
Sbjct: 89  TGGWQTWTTIQHTVNLSAGSHQFGIKANAGGWNLNW 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,275
Number of extensions: 34721
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 6
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)