Query psy2549
Match_columns 218
No_of_seqs 184 out of 318
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 19:04:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08190 PIH1: pre-RNA process 99.9 5.5E-21 1.2E-25 170.5 14.4 98 110-209 228-328 (328)
2 cd06472 ACD_ScHsp26_like Alpha 99.2 2.5E-11 5.4E-16 91.4 7.2 64 144-209 8-92 (92)
3 cd06498 ACD_alphaB-crystallin_ 99.2 2.5E-11 5.4E-16 91.2 6.7 65 144-210 6-84 (84)
4 cd06497 ACD_alphaA-crystallin_ 99.2 5.3E-11 1.2E-15 89.7 7.0 65 143-209 8-86 (86)
5 COG0071 IbpA Molecular chapero 99.2 7.6E-11 1.6E-15 96.0 8.1 65 145-211 50-134 (146)
6 PRK11597 heat shock chaperone 99.2 1E-10 2.2E-15 96.3 8.2 62 145-210 43-122 (142)
7 cd06478 ACD_HspB4-5-6 Alpha-cr 99.2 7.6E-11 1.6E-15 88.1 6.8 65 143-209 5-83 (83)
8 cd06475 ACD_HspB1_like Alpha c 99.2 8.6E-11 1.9E-15 88.5 6.7 65 143-209 8-86 (86)
9 cd06526 metazoan_ACD Alpha-cry 99.2 1.2E-10 2.6E-15 86.2 7.2 66 143-209 5-83 (83)
10 cd06476 ACD_HspB2_like Alpha c 99.1 2E-10 4.3E-15 86.3 7.5 65 143-209 5-83 (83)
11 cd06471 ACD_LpsHSP_like Group 99.1 1.6E-10 3.4E-15 86.8 6.9 64 143-209 8-93 (93)
12 cd06464 ACD_sHsps-like Alpha-c 99.1 2.3E-10 5.1E-15 82.8 7.1 64 144-209 6-88 (88)
13 cd06469 p23_DYX1C1_like p23_li 99.1 5.1E-10 1.1E-14 80.7 8.8 68 143-212 4-71 (78)
14 cd06479 ACD_HspB7_like Alpha c 99.1 3.2E-10 6.9E-15 85.1 7.1 64 143-208 6-80 (81)
15 PRK10743 heat shock protein Ib 99.1 3.2E-10 6.8E-15 92.6 7.5 63 144-210 44-124 (137)
16 cd06481 ACD_HspB9_like Alpha c 99.1 3.1E-10 6.8E-15 85.7 6.6 64 144-209 6-87 (87)
17 cd06470 ACD_IbpA-B_like Alpha- 99.1 5.2E-10 1.1E-14 84.3 7.4 60 145-208 11-89 (90)
18 cd06482 ACD_HspB10 Alpha cryst 99.0 1.1E-09 2.3E-14 83.3 7.0 63 145-208 8-86 (87)
19 PF00011 HSP20: Hsp20/alpha cr 99.0 1.6E-09 3.4E-14 81.9 7.9 69 143-213 5-91 (102)
20 cd06477 ACD_HspB3_Like Alpha c 99.0 1.8E-09 4E-14 81.3 7.4 63 144-208 6-82 (83)
21 cd00298 ACD_sHsps_p23-like Thi 98.9 3.5E-09 7.6E-14 73.2 7.2 64 144-209 5-80 (80)
22 cd06463 p23_like Proteins cont 98.7 8.7E-08 1.9E-12 68.1 8.7 67 144-212 5-76 (84)
23 cd06480 ACD_HspB8_like Alpha-c 98.5 8.7E-07 1.9E-11 68.1 8.0 71 137-208 7-90 (91)
24 cd06466 p23_CS_SGT1_like p23_l 98.4 2.6E-06 5.7E-11 61.8 8.5 68 143-212 5-77 (84)
25 PF05455 GvpH: GvpH; InterPro 98.0 3E-05 6.4E-10 66.4 8.5 64 146-212 103-170 (177)
26 PF04969 CS: CS domain; Inter 98.0 5.9E-05 1.3E-09 53.2 8.8 64 144-209 9-79 (79)
27 KOG0710|consensus 97.8 3.7E-05 8.1E-10 66.1 5.2 68 143-212 92-182 (196)
28 KOG4356|consensus 97.7 8.2E-06 1.8E-10 75.1 -0.5 70 142-211 237-309 (310)
29 cd06465 p23_hB-ind1_like p23_l 97.6 0.00036 7.7E-09 53.8 8.2 65 143-211 8-78 (108)
30 cd06467 p23_NUDC_like p23_like 97.6 0.00074 1.6E-08 49.2 8.8 67 144-212 7-77 (85)
31 cd06489 p23_CS_hSgt1_like p23_ 97.4 0.001 2.2E-08 48.9 8.2 66 144-211 6-76 (84)
32 cd06468 p23_CacyBP p23_like do 97.3 0.0024 5.1E-08 47.4 9.0 68 143-212 9-85 (92)
33 cd06493 p23_NUDCD1_like p23_NU 97.0 0.0081 1.7E-07 44.5 9.4 69 143-212 6-77 (85)
34 cd06488 p23_melusin_like p23_l 96.6 0.014 3E-07 43.6 7.7 66 144-211 9-79 (87)
35 cd00237 p23 p23 binds heat sho 96.6 0.015 3.3E-07 45.5 8.0 64 144-211 10-78 (106)
36 KOG3591|consensus 96.3 0.021 4.4E-07 48.7 7.8 68 143-211 70-150 (173)
37 KOG1309|consensus 95.8 0.028 6.1E-07 48.7 6.5 68 144-213 12-84 (196)
38 cd06492 p23_mNUDC_like p23-lik 95.6 0.14 3E-06 38.6 9.0 68 144-212 7-79 (87)
39 cd06494 p23_NUDCD2_like p23-li 95.4 0.14 3.1E-06 39.2 8.6 67 144-211 14-82 (93)
40 PLN03088 SGT1, suppressor of 94.8 0.13 2.8E-06 47.5 8.0 65 145-211 166-235 (356)
41 KOG3247|consensus 94.8 0.014 3.1E-07 56.0 1.6 66 145-210 13-79 (466)
42 cd06490 p23_NCB5OR p23_like do 94.5 0.35 7.5E-06 36.2 8.4 66 145-211 8-79 (87)
43 cd06495 p23_NUDCD3_like p23-li 93.9 0.6 1.3E-05 36.5 8.9 68 144-212 13-87 (102)
44 KOG3158|consensus 47.8 52 0.0011 28.6 5.6 65 144-213 16-86 (180)
45 KOG2265|consensus 47.5 1.1E+02 0.0024 26.6 7.5 66 145-212 28-97 (179)
46 PF00347 Ribosomal_L6: Ribosom 43.9 31 0.00066 24.4 3.2 30 159-188 3-32 (77)
47 PF14913 DPCD: DPCD protein fa 39.5 50 0.0011 29.0 4.3 66 145-210 96-169 (194)
48 COG5091 SGT1 Suppressor of G2 31.7 43 0.00093 31.5 2.8 83 111-212 169-257 (368)
49 CHL00140 rpl6 ribosomal protei 27.7 1.8E+02 0.0039 24.7 5.8 44 158-208 12-55 (178)
50 KOG3260|consensus 26.8 1.8E+02 0.004 25.7 5.7 65 144-210 83-153 (224)
51 PF13761 DUF4166: Domain of un 25.2 3.2E+02 0.007 22.6 6.8 50 159-210 96-147 (162)
52 PF09814 HECT_2: HECT-like Ubi 24.3 3.1E+02 0.0067 24.9 7.1 67 145-211 7-77 (354)
53 PF13349 DUF4097: Domain of un 20.3 4E+02 0.0086 20.9 6.2 46 160-216 86-135 (166)
No 1
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=99.86 E-value=5.5e-21 Score=170.48 Aligned_cols=98 Identities=37% Similarity=0.558 Sum_probs=91.5
Q ss_pred CCCCCCeEEEEEEeeccchhhhhccCCCCCCCCCCCcEEEEEEcCCCC-CCcceEEEeCCEEEEEecc--eEEEcCCCCC
Q psy2549 110 DPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQ-RENVDCDLTTQHVDIRSIK--YRLALPLPHP 186 (218)
Q Consensus 110 d~r~~PeY~i~ykq~V~teDvflgm~~k~Pss~~~e~LvV~I~LPg~~-~~dI~LdV~e~~L~L~s~k--Y~L~l~LP~p 186 (218)
..+..|+|+|+|++.|+++|++++++. + +++.|+.|+|+|+||++. .++|+|+|+++.|.|.++. |+|+|+|||+
T Consensus 228 ~~~~~P~y~i~~~~~v~~~~~~~~~~~-~-~~~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~ 305 (328)
T PF08190_consen 228 PDPPKPEYSIVYRQQVDLEDVRDSSDS-D-SSGSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYP 305 (328)
T ss_pred ccccCCcceEEeeccceeeeeeccccC-C-cCCCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCc
Confidence 458899999999999999999998444 4 678999999999999996 9999999999999999876 9999999999
Q ss_pred ccCCCeeeEEECCCcEEEEEEec
Q psy2549 187 VLPHLCQATWDSDKFELKLTLRL 209 (218)
Q Consensus 187 Vd~d~~kAkfd~~~g~L~VTLpv 209 (218)
|+.+.|+|+|++++++|+|||||
T Consensus 306 V~~~~~~Akf~~~~~~L~vtlpV 328 (328)
T PF08190_consen 306 VDEDNGKAKFDKKTKTLTVTLPV 328 (328)
T ss_pred ccCCCceEEEccCCCEEEEEEEC
Confidence 99999999999999999999996
No 2
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.23 E-value=2.5e-11 Score=91.38 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=58.5
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCcE
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKFE 202 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~-~L~L~s~--------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~ 202 (218)
.+.++|.++|||+++++|+|+|.++ .|.|++. .|.+.+.||..|+.++++|+|.+ |+
T Consensus 8 ~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~n--Gv 85 (92)
T cd06472 8 PEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLEN--GV 85 (92)
T ss_pred CCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEEC--CE
Confidence 4799999999999999999999975 8999762 47889999999999999999999 99
Q ss_pred EEEEEec
Q psy2549 203 LKLTLRL 209 (218)
Q Consensus 203 L~VTLpv 209 (218)
|+|+||+
T Consensus 86 L~I~lPK 92 (92)
T cd06472 86 LTVTVPK 92 (92)
T ss_pred EEEEecC
Confidence 9999995
No 3
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.23 E-value=2.5e-11 Score=91.18 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=60.4
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEEE-CCCcEEEEEEec
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATWD-SDKFELKLTLRL 209 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~k-------------Y~L~l~LP~pVd~d~~kAkfd-~~~g~L~VTLpv 209 (218)
.+.++|+++|||+++++|+|.|.++.|.|++.+ |.+.+.||..||.++++|+|. + |+|+|+||+
T Consensus 6 ~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~d--GvL~I~lPk 83 (84)
T cd06498 6 KDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPD--GVLTVCGPR 83 (84)
T ss_pred CceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCC--CEEEEEEeC
Confidence 478999999999999999999999999998742 889999999999999999995 8 999999997
Q ss_pred c
Q psy2549 210 T 210 (218)
Q Consensus 210 ~ 210 (218)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 4
No 4
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.19 E-value=5.3e-11 Score=89.68 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=60.1
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATW-DSDKFELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~k-------------Y~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp 208 (218)
..+.+.|.++|||+++++|+|.|.++.|.|++.+ |++.+.||..|+.+.++|+| .+ |+|+|++|
T Consensus 8 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~d--GvL~I~~P 85 (86)
T cd06497 8 DRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSAD--GMLTFSGP 85 (86)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCC--CEEEEEec
Confidence 4579999999999999999999999999998742 88999999999999999999 68 99999999
Q ss_pred c
Q psy2549 209 L 209 (218)
Q Consensus 209 v 209 (218)
+
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 5
No 5
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.6e-11 Score=96.00 Aligned_cols=65 Identities=23% Similarity=0.446 Sum_probs=60.5
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCcEEE
Q psy2549 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKFELK 204 (218)
Q Consensus 145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~--------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~ 204 (218)
+.++|.++|||+++++|+|.+.++.|.|++. .|++.+.||..|+++.++|+|.+ |+|+
T Consensus 50 ~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~n--GvL~ 127 (146)
T COG0071 50 DEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKN--GLLT 127 (146)
T ss_pred CEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeC--cEEE
Confidence 5999999999999999999999999999763 37799999999999999999999 9999
Q ss_pred EEEeccc
Q psy2549 205 LTLRLTR 211 (218)
Q Consensus 205 VTLpv~R 211 (218)
|+||+..
T Consensus 128 I~lpk~~ 134 (146)
T COG0071 128 VTLPKAE 134 (146)
T ss_pred EEEeccc
Confidence 9999854
No 6
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.17 E-value=1e-10 Score=96.27 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=57.4
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEE
Q psy2549 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKFELKLT 206 (218)
Q Consensus 145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VT 206 (218)
+.++|+++|||+++++|+|+|.++.|+|++. .|.+.+.||..|+.+ +|+|.+ |+|+|+
T Consensus 43 ~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n--GVL~I~ 118 (142)
T PRK11597 43 NHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN--GLLHID 118 (142)
T ss_pred CEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC--CEEEEE
Confidence 5799999999999999999999999999874 378999999999998 799999 999999
Q ss_pred Eecc
Q psy2549 207 LRLT 210 (218)
Q Consensus 207 Lpv~ 210 (218)
||+.
T Consensus 119 lPK~ 122 (142)
T PRK11597 119 LIRN 122 (142)
T ss_pred Eecc
Confidence 9985
No 7
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.17 E-value=7.6e-11 Score=88.11 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp 208 (218)
..+.++|.++|||+++++|+|.+.++.|.|++. .|.+.+.||..|+.+.++|+| .+ |+|+|++|
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~d--GvL~I~~P 82 (83)
T cd06478 5 DKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSAD--GVLTISGP 82 (83)
T ss_pred cCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCC--CEEEEEec
Confidence 347899999999999999999999999999873 288999999999999999999 58 99999999
Q ss_pred c
Q psy2549 209 L 209 (218)
Q Consensus 209 v 209 (218)
+
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 5
No 8
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.15 E-value=8.6e-11 Score=88.54 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=60.3
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCcEEEEEEe
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKFELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd-~~~g~L~VTLp 208 (218)
..+.++|+++|||+++++|+|.|.++.|.|++. .|++.+.||..|+.++.+|+|. + |+|+|+||
T Consensus 8 ~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~d--GvL~I~lP 85 (86)
T cd06475 8 TADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPD--GILTVEAP 85 (86)
T ss_pred cCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCC--CeEEEEec
Confidence 347999999999999999999999999999874 2899999999999999999997 8 99999999
Q ss_pred c
Q psy2549 209 L 209 (218)
Q Consensus 209 v 209 (218)
+
T Consensus 86 ~ 86 (86)
T cd06475 86 I 86 (86)
T ss_pred C
Confidence 6
No 9
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.15 E-value=1.2e-10 Score=86.25 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=60.9
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEec
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRL 209 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv 209 (218)
.++.++|.++|||+++++|+|.|.++.|.|++. .|++.+.||..|+++.++|+|.+ .|+|+|++|+
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~-~GvL~I~~Pk 83 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSS-DGVLTIEAPK 83 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCC-CcEEEEEecC
Confidence 447999999999999999999999999999763 58899999999999999999987 5999999995
No 10
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.13 E-value=2e-10 Score=86.33 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=59.7
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCcEEEEEEe
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKFELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd-~~~g~L~VTLp 208 (218)
..+.+.|.++|||+++++|+|.|.++.|.|++. .|++.+.||..|+++.++|+|. + |+|+|++|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~d--GvL~I~~P 82 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHD--GILCIQAP 82 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCC--CEEEEEec
Confidence 347899999999999999999999999999874 2789999999999999999996 8 99999999
Q ss_pred c
Q psy2549 209 L 209 (218)
Q Consensus 209 v 209 (218)
+
T Consensus 83 r 83 (83)
T cd06476 83 R 83 (83)
T ss_pred C
Confidence 5
No 11
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.13 E-value=1.6e-10 Score=86.79 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=57.3
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------------------ceEEEcCCCCCccCCCeeeEEECCC
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------------------KYRLALPLPHPVLPHLCQATWDSDK 200 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~----------------------kY~L~l~LP~pVd~d~~kAkfd~~~ 200 (218)
..+.++|.++|||+++++|+|.+.++.|.|++. .|.+.+.|| .|+.+.++|+|++
T Consensus 8 ~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~~d-- 84 (93)
T cd06471 8 TDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKYEN-- 84 (93)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEEEC--
Confidence 347999999999999999999999999999542 367889999 7999999999999
Q ss_pred cEEEEEEec
Q psy2549 201 FELKLTLRL 209 (218)
Q Consensus 201 g~L~VTLpv 209 (218)
|+|+|+||+
T Consensus 85 GvL~I~lPK 93 (93)
T cd06471 85 GVLKITLPK 93 (93)
T ss_pred CEEEEEEcC
Confidence 999999995
No 12
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.11 E-value=2.3e-10 Score=82.75 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=59.8
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-------------------cceEEEcCCCCCccCCCeeeEEECCCcEEE
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-------------------IKYRLALPLPHPVLPHLCQATWDSDKFELK 204 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-------------------~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~ 204 (218)
.+.++|.|+|||+..++|+|.+.++.|.|++ ..|++.+.||..|+.+.++|.|.+ |+|+
T Consensus 6 ~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~--G~L~ 83 (88)
T cd06464 6 DDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN--GVLT 83 (88)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC--CEEE
Confidence 4799999999999999999999999999983 358999999999999999999999 9999
Q ss_pred EEEec
Q psy2549 205 LTLRL 209 (218)
Q Consensus 205 VTLpv 209 (218)
|++|+
T Consensus 84 I~~pk 88 (88)
T cd06464 84 ITLPK 88 (88)
T ss_pred EEEcC
Confidence 99985
No 13
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.11 E-value=5.1e-10 Score=80.74 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=63.7
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
..+.++|+|.|||++.+++++.++...|.++...|.+.+.||++|+++.++|++.+ |.|+|+|++..+
T Consensus 4 t~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~--~~l~i~L~K~~~ 71 (78)
T cd06469 4 TDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGN--GVLVFTLVKKEP 71 (78)
T ss_pred cCCEEEEEEEeCCCccccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEEeC--CEEEEEEEeCCC
Confidence 34789999999999999999999999999999999999999999999999999999 999999999754
No 14
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.09 E-value=3.2e-10 Score=85.06 Aligned_cols=64 Identities=11% Similarity=0.222 Sum_probs=59.8
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~----------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp 208 (218)
..+.++|.++|||+++++|++.|.++.|.|++. .|.+.+.||..||+++++|+| .+ |+|+|+++
T Consensus 6 ~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~--GvL~I~~~ 80 (81)
T cd06479 6 LGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGED--GTLTIKAR 80 (81)
T ss_pred cCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCC--CEEEEEec
Confidence 458999999999999999999999999999874 588999999999999999997 88 99999987
No 15
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.08 E-value=3.2e-10 Score=92.65 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=57.8
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCcEEEE
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKFELKL 205 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~V 205 (218)
.++++|+++|||+++++|+|+|.++.|+|++. .|.+.+.||..|+.+ +|+|.+ |+|+|
T Consensus 44 ~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~~d--GVL~I 119 (137)
T PRK10743 44 ENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANLVN--GLLYI 119 (137)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEEeC--CEEEE
Confidence 37899999999999999999999999999863 377899999999998 499999 99999
Q ss_pred EEecc
Q psy2549 206 TLRLT 210 (218)
Q Consensus 206 TLpv~ 210 (218)
+||+.
T Consensus 120 ~lPK~ 124 (137)
T PRK10743 120 DLERV 124 (137)
T ss_pred EEeCC
Confidence 99985
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.07 E-value=3.1e-10 Score=85.66 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=58.9
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----------------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEE
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----------------KYRLALPLPHPVLPHLCQATW-DSDKFELKL 205 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-----------------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~V 205 (218)
.+.++|.++|||+++++|+|.|.++.|.|++. .|++.+.||..|+.+.++|.| .+ |+|+|
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~d--GvL~I 83 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPS--GHLHI 83 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCC--ceEEE
Confidence 47899999999999999999999999999763 277999999999999999999 78 99999
Q ss_pred EEec
Q psy2549 206 TLRL 209 (218)
Q Consensus 206 TLpv 209 (218)
++|.
T Consensus 84 ~~P~ 87 (87)
T cd06481 84 RAPR 87 (87)
T ss_pred EcCC
Confidence 9983
No 17
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.06 E-value=5.2e-10 Score=84.33 Aligned_cols=60 Identities=12% Similarity=0.271 Sum_probs=55.8
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEe-------------------cceEEEcCCCCCccCCCeeeEEECCCcEEEE
Q psy2549 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRS-------------------IKYRLALPLPHPVLPHLCQATWDSDKFELKL 205 (218)
Q Consensus 145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-------------------~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~V 205 (218)
+.++|+++|||+++++|+|.+.++.|.|++ ..|.+.+.||..|+.. +|+|.+ |+|+|
T Consensus 11 ~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~~--GvL~I 86 (90)
T cd06470 11 NNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELEN--GLLTI 86 (90)
T ss_pred CeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEeC--CEEEE
Confidence 689999999999999999999999999994 3588999999999875 899999 99999
Q ss_pred EEe
Q psy2549 206 TLR 208 (218)
Q Consensus 206 TLp 208 (218)
+|+
T Consensus 87 ~l~ 89 (90)
T cd06470 87 DLE 89 (90)
T ss_pred EEE
Confidence 997
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.00 E-value=1.1e-09 Score=83.32 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=57.5
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEe
Q psy2549 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLR 208 (218)
Q Consensus 145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~----------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLp 208 (218)
+.++|+++|||+++++|+|.|.++.|.|++. .|++.|.||..|+.++++|+|.+ .|+|+|.-|
T Consensus 8 ~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~-~~~l~i~~~ 86 (87)
T cd06482 8 SNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGL-GSVVKIETP 86 (87)
T ss_pred CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcC-CCEEEEeeC
Confidence 8999999999999999999999999999873 26799999999999999999999 349999765
No 19
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.00 E-value=1.6e-09 Score=81.91 Aligned_cols=69 Identities=19% Similarity=0.392 Sum_probs=57.2
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCcEEE
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKFELK 204 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~ 204 (218)
..+.+.|.++|||+..++|+|.+.++.|.|++. .|...+.||..|+.++++|+|.+ |+|+
T Consensus 5 ~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~--GvL~ 82 (102)
T PF00011_consen 5 DEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYEN--GVLT 82 (102)
T ss_dssp SSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETT--SEEE
T ss_pred CCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecC--CEEE
Confidence 347899999999999999999999999999763 37889999999999999999966 9999
Q ss_pred EEEeccccc
Q psy2549 205 LTLRLTREF 213 (218)
Q Consensus 205 VTLpv~Re~ 213 (218)
|++|+....
T Consensus 83 I~~pk~~~~ 91 (102)
T PF00011_consen 83 ITIPKKEEE 91 (102)
T ss_dssp EEEEBSSSC
T ss_pred EEEEccccc
Confidence 999998653
No 20
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=98.98 E-value=1.8e-09 Score=81.34 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=57.9
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLR 208 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp 208 (218)
.+.++|+++|||+++++|+|.|.++.|.|++. .|.+.+.||..|+.+.++|+| ++ |+|+|+-+
T Consensus 6 ~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~d--GvL~I~~~ 82 (83)
T cd06477 6 KPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHD--GILVVETK 82 (83)
T ss_pred CceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCC--CEEEEEec
Confidence 47899999999999999999999999999873 378999999999999999998 67 99999865
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.94 E-value=3.5e-09 Score=73.19 Aligned_cols=64 Identities=23% Similarity=0.452 Sum_probs=59.7
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe------------cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEec
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS------------IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRL 209 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s------------~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv 209 (218)
.+.+.|+|.||+...+++.+.+.++.|.|++ ..|++.+.||++|+++.++|+|.+ |.|+|+||+
T Consensus 5 ~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~--~~l~i~l~K 80 (80)
T cd00298 5 DDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN--GVLEITLPK 80 (80)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEEC--CEEEEEEcC
Confidence 3789999999999999999999999999983 479999999999999999999999 999999985
No 22
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.73 E-value=8.7e-08 Score=68.13 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=61.9
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
.+.+.|.|.+|+...+++.++++++.|.|+. ..|.+.+.|+++|+++.+++++.. +.|+|+|+++.+
T Consensus 5 ~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~l~i~L~K~~~ 76 (84)
T cd06463 5 LDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVED--RKIEITLKKKEP 76 (84)
T ss_pred ccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeC--CEEEEEEEECCC
Confidence 4789999999999999999999999999985 579999999999999999999988 999999998765
No 23
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=98.46 E-value=8.7e-07 Score=68.07 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=64.0
Q ss_pred CCCCCCCCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCcEE
Q psy2549 137 KTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKFEL 203 (218)
Q Consensus 137 k~Pss~~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L 203 (218)
+.|.+...+.+.|.+++-|.+.+||++.+.++.|.|++. .|.+.+.||..|+.+.++|.+.. .|+|
T Consensus 7 ~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~-dGvL 85 (91)
T cd06480 7 RNPPPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSP-EGLL 85 (91)
T ss_pred cCCCCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCC-CCeE
Confidence 456677889999999999999999999999999999763 38899999999999999999993 3999
Q ss_pred EEEEe
Q psy2549 204 KLTLR 208 (218)
Q Consensus 204 ~VTLp 208 (218)
+|++|
T Consensus 86 ~IeaP 90 (91)
T cd06480 86 IIEAP 90 (91)
T ss_pred EEEcC
Confidence 99988
No 24
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.38 E-value=2.6e-06 Score=61.84 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=60.3
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
..+.+.|.|.+||+..+++.+.++++.|.|+. ..|.+.+.|.++|+++.+++++.. +.|+|+|++...
T Consensus 5 t~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~vei~L~K~~~ 77 (84)
T cd06466 5 TDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLP--TKVEITLKKAEP 77 (84)
T ss_pred cCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeC--eEEEEEEEcCCC
Confidence 34789999999999999999999999999964 269999999999999988888777 899999998753
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.01 E-value=3e-05 Score=66.40 Aligned_cols=64 Identities=31% Similarity=0.548 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCCCc-ceEEEe--CCEEEEEe-cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 146 DMLVTIQLPGEQREN-VDCDLT--TQHVDIRS-IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 146 ~LvV~I~LPg~~~~d-I~LdV~--e~~L~L~s-~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
+++|.++|||+...+ |++.|. ...|.++. .+|.-++.||.+ ..+..+|+|+| |+|+|.|....+
T Consensus 103 e~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~~~~krv~L~~~-~~e~~~~t~nN--gILEIri~~~~~ 170 (177)
T PF05455_consen 103 ELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGEKYLKRVALPWP-DPEITSATFNN--GILEIRIRRTEE 170 (177)
T ss_pred cEEEEEeCCCCCcccceeeEeecCCceEEEecCCceEeeEecCCC-ccceeeEEEeC--ceEEEEEeecCC
Confidence 799999999998776 777776 66777764 478899999999 67888999999 999999976543
No 26
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.01 E-value=5.9e-05 Score=53.20 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=54.8
Q ss_pred CCcEEEEEEcCCCC--CCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEec
Q psy2549 144 CEDMLVTIQLPGEQ--RENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRL 209 (218)
Q Consensus 144 ~e~LvV~I~LPg~~--~~dI~LdV~e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv 209 (218)
.+.+.|.|.+++.. .+++.++++++.|.++.. .|.+.+.|.++|+++.++.+... +.|+|+|.+
T Consensus 9 ~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~i~i~L~K 79 (79)
T PF04969_consen 9 DDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKD--NKIEITLKK 79 (79)
T ss_dssp SSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEET--TEEEEEEEB
T ss_pred CCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEEC--CEEEEEEEC
Confidence 36899999996654 999999999999999853 79999999999999999999988 799999974
No 27
>KOG0710|consensus
Probab=97.77 E-value=3.7e-05 Score=66.09 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=61.4
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec----------------------ceEEEcCCCCCccCCCeeeEEECC
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI----------------------KYRLALPLPHPVLPHLCQATWDSD 199 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~-~L~L~s~----------------------kY~L~l~LP~pVd~d~~kAkfd~~ 199 (218)
..+.+++.++|||+...+|.+++.+. .|.+++. .|...+.||..|+.++.+|.|.+
T Consensus 92 ~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~n- 170 (196)
T KOG0710|consen 92 SPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEMEN- 170 (196)
T ss_pred CCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHhhC-
Confidence 56899999999999999999999998 5888763 27789999999999999999999
Q ss_pred CcEEEEEEecccc
Q psy2549 200 KFELKLTLRLTRE 212 (218)
Q Consensus 200 ~g~L~VTLpv~Re 212 (218)
|+|+|++|+.-.
T Consensus 171 -GVL~VvvpK~~~ 182 (196)
T KOG0710|consen 171 -GVLTVVVPKLEP 182 (196)
T ss_pred -CeEEEEEecccc
Confidence 999999998765
No 28
>KOG4356|consensus
Probab=97.66 E-value=8.2e-06 Score=75.08 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=65.8
Q ss_pred CCCCcEEEEEEcCCCC-CCcceEEEeCCEEEEEec-c-eEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549 142 VSCEDMLVTIQLPGEQ-RENVDCDLTTQHVDIRSI-K-YRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR 211 (218)
Q Consensus 142 ~~~e~LvV~I~LPg~~-~~dI~LdV~e~~L~L~s~-k-Y~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R 211 (218)
..+..+.++|+||+.+ +..++|.|+++++.+.+. + |+|.+++|+-++.+.+.|.|+..+..|.||||+.|
T Consensus 237 e~p~~i~~e~~lp~~n~~~~~sl~v~e~ri~i~~~~~~y~l~~~~~~~~~~~~~~a~Fd~~~~al~i~~P~~~ 309 (310)
T KOG4356|consen 237 EAPDEIEAEIDLPNYNSMQEFSLLVGEDRIVIETRKQGYRLNLNIPYIIDQDRAPALFDKTTKALHITIPVVR 309 (310)
T ss_pred cCcchhhhhhhcccchhhhccccccCCcceEeccCccceeeccccccccCcccchhhHHHHHHhhheeccccC
Confidence 4678999999999999 999999999999999875 4 99999999999999999999999999999999986
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.63 E-value=0.00036 Score=53.85 Aligned_cols=65 Identities=17% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR 211 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R 211 (218)
..+.+.|.|.+|++ +++.++++++.|.|+.. .|++.+.|.++|+++.++.++.. +.++|+|.+..
T Consensus 8 t~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~--~kveI~L~K~~ 78 (108)
T cd06465 8 RSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTG--RQIEFVLRKKE 78 (108)
T ss_pred CCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecC--CeEEEEEEECC
Confidence 34689999999998 88999999999999752 39999999999999998888877 88999999875
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.56 E-value=0.00074 Score=49.17 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=56.5
Q ss_pred CCcEEEEEEcCC-CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCC-cEEEEEEecccc
Q psy2549 144 CEDMLVTIQLPG-EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDK-FELKLTLRLTRE 212 (218)
Q Consensus 144 ~e~LvV~I~LPg-~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~-g~L~VTLpv~Re 212 (218)
.+.+.|.|.+|. ++.+++.++++++.|.|+.. .|.+...|.++|+++.++ |.-.. ..|.|+|++..+
T Consensus 7 ~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~--w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 7 LDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDEST--WTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCE--EEEeCCCEEEEEEEECCC
Confidence 368999999984 67999999999999999865 688899999999999766 44444 789999998754
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.44 E-value=0.001 Score=48.90 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=57.5
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR 211 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R 211 (218)
.+.+.|.|.++++..+++.++++++.|.++. ..|.+.+.|-++|++++++.+--. +.++|+|.+..
T Consensus 6 ~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~kiei~L~K~~ 76 (84)
T cd06489 6 ESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILS--TKIEIKLKKTE 76 (84)
T ss_pred CCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeC--cEEEEEEEcCC
Confidence 3679999999999999999999999999975 369999999999999977777765 77999998763
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.31 E-value=0.0024 Score=47.45 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=58.6
Q ss_pred CCCcEEEEEEcCCCCC---CcceEEEeCCEEEEEe-----cceEEEcC-CCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 143 SCEDMLVTIQLPGEQR---ENVDCDLTTQHVDIRS-----IKYRLALP-LPHPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~---~dI~LdV~e~~L~L~s-----~kY~L~l~-LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
..+.+.|.|.+|+... +++.++++++.|.+.. ..|.+.+. |-++|++++++.+... +.++|+|.+..+
T Consensus 9 t~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~--~ki~i~L~K~~~ 85 (92)
T cd06468 9 SDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKT--DRIVITLAKKKE 85 (92)
T ss_pred CCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeC--CEEEEEEEeCCC
Confidence 4578999999999875 9999999999999975 25888886 9999999988888766 889999998865
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.04 E-value=0.0081 Score=44.50 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=55.7
Q ss_pred CCCcEEEEEEcC-CCCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 143 SCEDMLVTIQLP-GEQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LP-g~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
..+++.|.|.+| ++..+++.+.++.+.|.+... ...+...|.++|+++.+.=+... .+.|+|+|.++.+
T Consensus 6 t~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~-~~~l~i~L~K~~~ 77 (85)
T cd06493 6 TEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKE-NKSLEVSLIKKDE 77 (85)
T ss_pred eCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeC-CCEEEEEEEECCC
Confidence 347899999996 888999999999999999753 45688899999999876644433 2469999998764
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.60 E-value=0.014 Score=43.57 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=55.1
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR 211 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R 211 (218)
.+.+.|.|.+.++..+++.+.++++.|.++. ..|.+.+.|-++|+++..+ |......++|+|.+..
T Consensus 9 ~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~--~~v~~~kvei~L~K~~ 79 (87)
T cd06488 9 GSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSS--VNMLPTKVEIKLRKAE 79 (87)
T ss_pred CCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcE--EEecCcEEEEEEEeCC
Confidence 3679999999999999999999999987642 2699999999999998754 5555599999998864
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.55 E-value=0.015 Score=45.52 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=53.3
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR 211 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R 211 (218)
.+.+.|+|.+|+ ..++.++++++.|.+++ ..|++.|.|=.+|+++.++-+- ....++|.|.++.
T Consensus 10 ~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v--~~r~ve~~L~K~~ 78 (106)
T cd00237 10 RDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKR--TDRSILCCLRKGK 78 (106)
T ss_pred CCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEe--CCceEEEEEEeCC
Confidence 358999999998 68999999999999986 2599999999999999666554 4478888888764
No 36
>KOG3591|consensus
Probab=96.28 E-value=0.021 Score=48.68 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=61.2
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEec
Q psy2549 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRL 209 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv 209 (218)
..+.+-|.++.-..+.++|.+.+.++.|.|.+. .|.+++.||.-||++.+++...+ .|+|+|+.|+
T Consensus 70 ~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~-dGvLtI~ap~ 148 (173)
T KOG3591|consen 70 DKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSS-DGVLTIEAPK 148 (173)
T ss_pred CCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCC-CceEEEEccC
Confidence 458899999999999999999999999999874 38899999999999999999987 7999999887
Q ss_pred cc
Q psy2549 210 TR 211 (218)
Q Consensus 210 ~R 211 (218)
.-
T Consensus 149 ~~ 150 (173)
T KOG3591|consen 149 PP 150 (173)
T ss_pred CC
Confidence 64
No 37
>KOG1309|consensus
Probab=95.80 E-value=0.028 Score=48.72 Aligned_cols=68 Identities=21% Similarity=0.306 Sum_probs=58.6
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccccc
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREF 213 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re~ 213 (218)
...++|.|..+++..+++.|+++++.|.+... -|.|.+.|=|+|.++..+-+--+ ..++|||++.+..
T Consensus 12 ~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~s--tKVEI~L~K~~~i 84 (196)
T KOG1309|consen 12 ETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFS--TKVEITLAKAEII 84 (196)
T ss_pred CceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeee--eeEEEEeccccch
Confidence 46899999999999999999999999987543 59999999999999988776666 7899999986643
No 38
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.64 E-value=0.14 Score=38.60 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCC---CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 144 CEDMLVTIQLPG---EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 144 ~e~LvV~I~LPg---~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
.+++.|.|.||. ++++++.++++.+.|.+... .+.+.-.|.++|+.+.+.=.... .+.|.|+|-+.++
T Consensus 7 ~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wtled-~~~l~i~L~K~~~ 79 (87)
T cd06492 7 LSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIED-GKVVTVNLEKINK 79 (87)
T ss_pred cCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEEEeC-CCEEEEEEEECCC
Confidence 367899999975 67999999999999999864 57899999999999866544332 3589999998854
No 39
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.43 E-value=0.14 Score=39.19 Aligned_cols=67 Identities=15% Similarity=0.362 Sum_probs=52.9
Q ss_pred CCcEEEEEEcCC-CCCCcceEEEeCCEEEEEec-ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549 144 CEDMLVTIQLPG-EQRENVDCDLTTQHVDIRSI-KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR 211 (218)
Q Consensus 144 ~e~LvV~I~LPg-~~~~dI~LdV~e~~L~L~s~-kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R 211 (218)
.+++.|+|.||. ++++++.++++.+.|.+... .=.|.=.|...|+++.+.=+... .++|.|+|.+..
T Consensus 14 ~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~~l~G~L~~~I~~destWtled-~k~l~I~L~K~~ 82 (93)
T cd06494 14 MDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVVADECTWTLED-RKLIRIVLTKSN 82 (93)
T ss_pred cCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEEEEcCcccCccCcccCEEEEEC-CcEEEEEEEeCC
Confidence 368999999885 66999999999999999853 22566689999999977655444 345899999874
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.78 E-value=0.13 Score=47.47 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=57.6
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR 211 (218)
Q Consensus 145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R 211 (218)
..++|.|.+.|+..+++.+++.++.|.|+- ..|.+.+.|=++|+++.++-+--. ..++|+|.+..
T Consensus 166 ~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~Kiei~l~K~~ 235 (356)
T PLN03088 166 EEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLS--TKIEIRLAKAE 235 (356)
T ss_pred CEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEec--ceEEEEEecCC
Confidence 579999999999999999999999998874 369999999999999998888877 68999997764
No 41
>KOG3247|consensus
Probab=94.77 E-value=0.014 Score=56.00 Aligned_cols=66 Identities=18% Similarity=0.117 Sum_probs=61.3
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccC-CCeeeEEECCCcEEEEEEecc
Q psy2549 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLP-HLCQATWDSDKFELKLTLRLT 210 (218)
Q Consensus 145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~kY~L~l~LP~pVd~-d~~kAkfd~~~g~L~VTLpv~ 210 (218)
+.+.++|..|..+++.+++++.++.+.+.++.|+|++.+|+.|.. ..+.|+|+...|...|.+|+.
T Consensus 13 e~~~L~I~~p~~~a~~le~~a~~nm~~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~ 79 (466)
T KOG3247|consen 13 EFCTLIIPRPLNQASKLEIDAAANMASFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKF 79 (466)
T ss_pred ceEEEEeeccccchhccchhhHhhhhhhccchhHHhhcCcchhhhhccccCccccccceeEEeecCC
Confidence 688999999987899999999999999999999999999999876 788999999999999999984
No 42
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=94.55 E-value=0.35 Score=36.23 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCCC--CCcceEEEeCCEEEEEe----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549 145 EDMLVTIQLPGEQ--RENVDCDLTTQHVDIRS----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR 211 (218)
Q Consensus 145 e~LvV~I~LPg~~--~~dI~LdV~e~~L~L~s----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R 211 (218)
..++|.|...+.. ...+.++..++.|.++- .-|.+.+.|=++|+++. ..++....+.++|+|++..
T Consensus 8 ~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 8 SEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKE 79 (87)
T ss_pred CEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCC
Confidence 5889999988654 55566777888888873 35899999999998776 8888876789999999764
No 43
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.95 E-value=0.6 Score=36.49 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=52.9
Q ss_pred CCcEEEEEEcCC-C-CCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 144 CEDMLVTIQLPG-E-QRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 144 ~e~LvV~I~LPg-~-~~~dI~LdV~e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
-+++.|+|.||. + +++++.++++.+.|.+... .-.|.=.|..+|+.+.+.=.... ...|.|+|-+.++
T Consensus 13 l~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled-~~~l~I~L~K~~~ 87 (102)
T cd06495 13 YTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEP-GKCVLLSLSKCSE 87 (102)
T ss_pred CCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeC-CCEEEEEEEECCC
Confidence 378999999996 3 5899999999999998753 23588889999999866544332 3568999988754
No 44
>KOG3158|consensus
Probab=47.83 E-value=52 Score=28.57 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=46.4
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccccc
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREF 213 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re~ 213 (218)
-+-+.++|.++.. .+..|.++...|++++. .|.+.|.|=+.|++++++-+=. +.+.++++.+.+.
T Consensus 16 ~~~vyltv~Ved~--~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~---~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 16 RDLVYLTVCVEDA--KDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRT---SRSIFCILRKKEL 86 (180)
T ss_pred cCeEEEEEEeccC--ccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhcccccc---ceEEEEEEEcccc
Confidence 3567788877654 56667777788999864 5778899999999988765433 5666666655543
No 45
>KOG2265|consensus
Probab=47.47 E-value=1.1e+02 Score=26.60 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=49.9
Q ss_pred CcEEEEEEcC-CC-CCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 145 EDMLVTIQLP-GE-QRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 145 e~LvV~I~LP-g~-~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
+++-|.|.+| |+ +..+|.+.|....|.|... .-.|.=.|.++|..+.+. |.-+.+.+.|++-.++.
T Consensus 28 ~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~--WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 28 EEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDEST--WTIEDGKMIVILLKKSN 97 (179)
T ss_pred hheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccce--EEecCCEEEEEEeeccc
Confidence 4666777665 45 5899999999999999754 468999999999998654 66666877777655543
No 46
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=43.92 E-value=31 Score=24.37 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=26.8
Q ss_pred CcceEEEeCCEEEEEecceEEEcCCCCCcc
Q psy2549 159 ENVDCDLTTQHVDIRSIKYRLALPLPHPVL 188 (218)
Q Consensus 159 ~dI~LdV~e~~L~L~s~kY~L~l~LP~pVd 188 (218)
..+++.+.+..+.+.+++..|.+.||+.|.
T Consensus 3 ~gV~v~~~~~~i~v~G~~g~l~~~~~~~v~ 32 (77)
T PF00347_consen 3 EGVKVTIKGNIITVKGPKGELSRPIPPGVK 32 (77)
T ss_dssp TTCEEEEETTEEEEESSSSEEEEEETTTEE
T ss_pred CcEEEEEeCcEEEEECCCEeEEEECCCCee
Confidence 568899999999999999999999998754
No 47
>PF14913 DPCD: DPCD protein family
Probab=39.50 E-value=50 Score=29.01 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=48.1
Q ss_pred CcEEEEE-EcCCCC-CCcceEEEeCCEEEEEec--ceEEEcCCCCC----ccCCCeeeEEECCCcEEEEEEecc
Q psy2549 145 EDMLVTI-QLPGEQ-RENVDCDLTTQHVDIRSI--KYRLALPLPHP----VLPHLCQATWDSDKFELKLTLRLT 210 (218)
Q Consensus 145 e~LvV~I-~LPg~~-~~dI~LdV~e~~L~L~s~--kY~L~l~LP~p----Vd~d~~kAkfd~~~g~L~VTLpv~ 210 (218)
..+.-+| .||.-. .=.|.++=.+..+.|++. +|+-+|..|.- +-.+.+..+|.....+|.|+-.+-
T Consensus 96 ~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP 169 (194)
T PF14913_consen 96 TSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKKP 169 (194)
T ss_pred cceEEEEccCCCCccceEEEEcCCCcEEEEECcCccceeEecCCcHHhhCCCcchhhceeeeecCeEEEEecCc
Confidence 4666666 477754 556666666678999975 89999999963 334677777777779999996543
No 48
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=31.72 E-value=43 Score=31.47 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=62.3
Q ss_pred CCCCCeEEEEEEeeccchhhhhccCCCCCCCCCCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec--c----eEEEcCCC
Q psy2549 111 PRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI--K----YRLALPLP 184 (218)
Q Consensus 111 ~r~~PeY~i~ykq~V~teDvflgm~~k~Pss~~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~--k----Y~L~l~LP 184 (218)
+-+.|+.+|.|-+. .-...+.|-|.-|-+..++|.+-+..++|.|+-. + +-....|-
T Consensus 169 ~qE~~~~~i~yd~s-----------------~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly 231 (368)
T COG5091 169 PQESPKMEIAYDFS-----------------ETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLY 231 (368)
T ss_pred cccCccceeeeecc-----------------ccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhh
Confidence 34578888877762 1224678888889999999999999999998742 2 23467888
Q ss_pred CCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549 185 HPVLPHLCQATWDSDKFELKLTLRLTRE 212 (218)
Q Consensus 185 ~pVd~d~~kAkfd~~~g~L~VTLpv~Re 212 (218)
+.|+++...-+--+ .+++|+|.++.+
T Consensus 232 ~ev~P~~~s~k~fs--K~~e~~l~KV~~ 257 (368)
T COG5091 232 KEVYPDIRSIKSFS--KRVEVHLRKVEM 257 (368)
T ss_pred hhcCcchhhhhhcc--hhheehhhhhhh
Confidence 99999988776666 788888876543
No 49
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=27.67 E-value=1.8e+02 Score=24.68 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=33.3
Q ss_pred CCcceEEEeCCEEEEEecceEEEcCCCCCccCCCeeeEEECCCcEEEEEEe
Q psy2549 158 RENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLR 208 (218)
Q Consensus 158 ~~dI~LdV~e~~L~L~s~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLp 208 (218)
++.+++++.++.|.+.+|+=.|...||+.|.- .-+ .+.+.|+..
T Consensus 12 P~~V~v~i~~~~v~vkGp~G~l~~~~~~~v~i-----~~~--~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKGTLSRKIPDLITI-----EIQ--DNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCEEEEEECCCCeEE-----EEe--CCEEEEEcC
Confidence 56888999999999999999999999996533 223 355666543
No 50
>KOG3260|consensus
Probab=26.81 E-value=1.8e+02 Score=25.72 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=52.8
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEc-CCCCCccCCCeeeEEECCCcEEEEEEecc
Q psy2549 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLAL-PLPHPVLPHLCQATWDSDKFELKLTLRLT 210 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l-~LP~pVd~d~~kAkfd~~~g~L~VTLpv~ 210 (218)
.+.+-+-|.|-|+.-+.+++..+.+.|+|.. ..|++.+ .|=++++.+.++-+-.. .+..|+|.++
T Consensus 83 ~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKt--d~v~I~~kkV 153 (224)
T KOG3260|consen 83 NKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKT--DTVLILCKKV 153 (224)
T ss_pred CCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhccccccc--ceEEEeehhh
Confidence 3677888999999999999999999998854 5799876 48889999988877776 7777777443
No 51
>PF13761 DUF4166: Domain of unknown function (DUF4166)
Probab=25.20 E-value=3.2e+02 Score=22.56 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=34.0
Q ss_pred CcceEEEeCCEEEEEecceE-EEcCCCCCccCC-CeeeEEECCCcEEEEEEecc
Q psy2549 159 ENVDCDLTTQHVDIRSIKYR-LALPLPHPVLPH-LCQATWDSDKFELKLTLRLT 210 (218)
Q Consensus 159 ~dI~LdV~e~~L~L~s~kY~-L~l~LP~pVd~d-~~kAkfd~~~g~L~VTLpv~ 210 (218)
-++.|.|.+..|.+++..++ +.|+||.-..+. .+.-.|+. +...+.+.+.
T Consensus 96 ~~l~l~v~~G~L~~~s~~~~l~giplP~~L~p~~~~~E~~d~--~~f~f~V~v~ 147 (162)
T PF13761_consen 96 FDLRLRVEDGGLRFRSGRQRLFGIPLPRWLTPRAEAREHYDD--GRFRFDVEVS 147 (162)
T ss_pred EEEEEEEeCCEEEEEECCEEEEcccCCcccCCcEEEEEEEeC--CEEEEEEEEE
Confidence 36688889999999987544 568888876653 33335554 7777666543
No 52
>PF09814 HECT_2: HECT-like Ubiquitin-conjugating enzyme (E2)-binding; InterPro: IPR019193 This entry consists of E3 ubiquitin-protein ligases which accept ubiquitin from specific E2 ubiquitin-conjugating enzymes, and transfer it to substrates, generally promoting their degradation by the proteasome [].
Probab=24.32 E-value=3.1e+02 Score=24.85 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=45.7
Q ss_pred CcEEEEEEcCCCCCCc--ceEEEeCCEEEEEec-ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEeccc
Q psy2549 145 EDMLVTIQLPGEQREN--VDCDLTTQHVDIRSI-KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLRLTR 211 (218)
Q Consensus 145 e~LvV~I~LPg~~~~d--I~LdV~e~~L~L~s~-kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLpv~R 211 (218)
..+.|.|.+|.--... +.|......+.+... .....+.||..|......-.. ....+.+..+|++..
T Consensus 7 ~~~~v~v~~~~~~~~~~~~~l~~s~~~i~i~~~~~~~~~i~LP~~v~~~~~~~~~~~~~~~~~~~rl~~~~ 77 (354)
T PF09814_consen 7 RSISVFVSLPSEVNSSTRTSLSPSGLSITISEKSGESESIKLPAEVSLDSSTLSILQISSNELSFRLQLDE 77 (354)
T ss_pred ceEEEEEECCCccCcccceeecCCCCeEEEecCCceEEEEeCcCeEeeccccceeecccCceEEEEEEecC
Confidence 4567788887766333 466666777777766 778999999999987654433 334457777777653
No 53
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=20.27 E-value=4e+02 Score=20.85 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=28.1
Q ss_pred cceEEEeCCEEEEEec-ce---EEEcCCCCCccCCCeeeEEECCCcEEEEEEecccccccc
Q psy2549 160 NVDCDLTTQHVDIRSI-KY---RLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCV 216 (218)
Q Consensus 160 dI~LdV~e~~L~L~s~-kY---~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re~dfv 216 (218)
.+++.+.+++|.|+.. +. +.-+.|.. . .....++|+||....|+-+
T Consensus 86 ~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~----------~-~~~~~i~I~lP~~~~l~~i 135 (166)
T PF13349_consen 86 KPEISVEGGTLTIKSKDRESFFFKGFNFNN----------S-DNKSKITIYLPKDYKLDKI 135 (166)
T ss_pred EEEEEEcCCEEEEEEecccccccceEEEcc----------c-CCCcEEEEEECCCCceeEE
Confidence 6778888888888766 11 12111111 1 3458899999987655544
Done!