RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy255
(70 letters)
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer.
Length = 480
Score = 55.8 bits (135), Expect = 4e-11
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 4 TRSEEIPKQVLIGK-IEP-----SPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTG 57
TR+E+ +Q+ + + + P W D D R+ + +++ L +GD V+VV G
Sbjct: 405 TRNEQTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQG 464
Query: 58 WKKGAGFTNTL 68
W G+G TNT+
Sbjct: 465 WPVGSGSTNTM 475
>gnl|CDD|217269 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain. As well as
being found in pyruvate kinase this family is found as
an isolated domain in some bacterial proteins.
Length = 117
Score = 43.7 bits (104), Expect = 3e-07
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 28 DVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTLIV 70
D +A ++ +D + +GD V+V G G +G TNTL V
Sbjct: 72 STDEIIAEALRMAKDAGLVKKGDLVVVTAGVPVGTSGGTNTLKV 115
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a
homotetramer. Some forms are active only in the presence
of fructose-1,6-bisphosphate or similar phosphorylated
sugars [Energy metabolism, Glycolysis/gluconeogenesis].
Length = 473
Score = 39.6 bits (93), Expect = 2e-05
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 24 DWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGW--KKGAGFTNTL 68
+ D + RV ++ +++ L +GD V+V+ G G G TNT+
Sbjct: 425 EEPSDTEARVNKALELLKEKGILKKGDLVVVIQGGAPIGGVGGTNTI 471
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 32.5 bits (75), Expect = 0.007
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 23 ADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTG-WKKGAGFTNTLIV 70
+ D V ++ + + +GD V++ G G TNT+ V
Sbjct: 426 EEKPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVGTTNTIKV 474
>gnl|CDD|215461 PLN02856, PLN02856, fumarylacetoacetase.
Length = 424
Score = 30.4 bits (69), Expect = 0.047
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 40 GRDRKFLNQGDPVIVVTGWKKGAGF 64
G RKFL GD +V++GW KG G+
Sbjct: 385 GTRRKFLEDGD-EVVLSGWCKGDGY 408
>gnl|CDD|226862 COG4455, ImpE, Protein of avirulence locus involved in
temperature-dependent protein secretion [General
function prediction only].
Length = 273
Score = 29.4 bits (66), Expect = 0.11
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 13 VLIGKIEPSPADWLRDVDTRVAH 35
V IG + W+ D D R+
Sbjct: 137 VPIGHADGGSFAWIADSDDRLGP 159
>gnl|CDD|236809 PRK10964, PRK10964, ADP-heptose:LPS heptosyl transferase I;
Provisional.
Length = 322
Score = 28.8 bits (65), Expect = 0.17
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 31 TRVAHGIKYGRDRK 44
TR+AHG+K+G D +
Sbjct: 104 TRLAHGVKHGMDWQ 117
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional.
Length = 454
Score = 27.3 bits (60), Expect = 0.65
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 30 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTN 66
+ RVA G+ + + + ++ GD ++VV K G+ N
Sbjct: 410 EQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYAN 446
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 26.3 bits (58), Expect = 1.2
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 23 ADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTLI 69
+ + D + + I ++R + GD I V G K+ ++ L+
Sbjct: 461 VNSFQGTDVVIRNAIALAKERGLVESGDSAIAVHGVKEEVAGSSNLM 507
>gnl|CDD|148568 pfam07024, ImpE, ImpE protein. This family consists of several
bacterial proteins including ImpE from Rhizobium
leguminosarum. It has been suggested that the imp locus
is involved in the secretion to the environment of
proteins, including periplasmic RbsB protein, that
cause blocking of infection specifically in pea plants.
The exact function of this family is unknown.
Length = 122
Score = 25.6 bits (57), Expect = 1.5
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 19 EPSPADWLRDVDTRVAH 35
+ DW+ D D R+
Sbjct: 1 NGTAFDWIADADDRLGP 17
>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family. This family
includes kinases that phosphorylate a variety of amino
acid substrates, as well as uridylate kinase and
carbamate kinase. This family includes: Aspartokinase
EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8,
Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase
EC:2.7.4.-, Carbamate kinase EC:2.7.2.2.
Length = 230
Score = 25.5 bits (56), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 43 RKFLNQGDPVIVVTGWKKGAGFTNTLI 69
K L G V+VV+G G GFT+ L+
Sbjct: 26 AKLLALGIKVVVVSG---GGGFTDKLL 49
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 25.4 bits (56), Expect = 2.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 43 RKFLNQGDPVIVVTGWKKGAGFTN 66
R+ +N G V+V TG G+GF +
Sbjct: 24 RELVNHGHEVLVETGAGAGSGFDD 47
>gnl|CDD|238850 cd01752, PLAT_polycystin, PLAT/LH2 domain of polycystin-1 like
proteins. Polycystins are a large family of membrane
proteins composed of multiple domains, present in fish,
invertebrates, mammals, and humans that are widely
expressed in various cell types and whose biological
functions remain poorly defined. In human, mutations in
polycystin-1 (PKD1) and polycystin-2 (PKD2) have been
shown to be the cause for autosomal dominant polycystic
kidney disease (ADPKD). The generally proposed
function of PLAT/LH2 domains is to mediate interaction
with lipids or membrane bound proteins.
Length = 120
Score = 24.9 bits (55), Expect = 3.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 52 VIVVTGWKKGAGFTNTLIV 70
V V TGW++GAG T + +
Sbjct: 5 VTVFTGWRRGAGTTAKVTI 23
>gnl|CDD|211667 TIGR01530, nadN, NAD pyrophosphatase/5'-nucleotidase NadN. This
model describes NadN of Haemophilus influenzae and a
small number of close homologs in pathogenic,
Gram-negative bacteria. NadN is a periplasmic enzyme
that cleaves NAD (nicotinamide adenine dinucleotide) to
NMN (nicotinamide mononucleotide) and AMP. The NMN must
be converted by a 5'-nucleotidase to nicotinamide
riboside for import. NadN belongs a large family of
5'-nucleotidases and has NMN 5'-nucleotidase activity
for NMN, AMP, etc [Transport and binding proteins,
Other, Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 545
Score = 24.5 bits (53), Expect = 5.5
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 43 RKFLN-QGDPVIVVTGWKKGA 62
+F N G+PV V+ GW A
Sbjct: 237 LEFKNPNGEPVFVMEGWAYSA 257
>gnl|CDD|224561 COG1647, COG1647, Esterase/lipase [General function prediction
only].
Length = 243
Score = 24.2 bits (53), Expect = 7.3
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 18 IEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFT 65
++ +P DW DV+ G I V G G F
Sbjct: 61 LKTTPRDWWEDVEDGYRD---------LKEAGYDEIAVVGLSMGGVFA 99
>gnl|CDD|187705 cd09767, Csx17_I-U, CRISPR/Cas system-associated protein Csx17.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins; Predicted subunit of the Cascade
complex;.
Length = 652
Score = 23.9 bits (52), Expect = 7.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 45 FLNQGDPVIVVTGWKKGAGFTN 66
FL + P ++ W G+GF
Sbjct: 42 FLEEYQPTPIIAPWNGGSGFYR 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.418
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,706,722
Number of extensions: 282868
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 16
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)