RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy255
         (70 letters)



>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 53.8 bits (129), Expect = 1e-11
 Identities = 29/52 (55%), Positives = 35/52 (67%)

Query: 19  EPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTLIV 70
           EP  A W  DVD RV  GI+ G+ R FL  GD VIVVTGW+ G+G+TN + V
Sbjct: 80  EPPEAIWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRPGSGYTNIMRV 131


>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 134

 Score = 53.4 bits (128), Expect = 2e-11
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 19  EPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTLIV 70
           +   +DW  DV+ R+  GI+  ++   L +GD  + + G+K GAG +NTL V
Sbjct: 80  KEPVSDWTDDVEARINFGIEKAKEFGILKKGDTYVSIQGFKAGAGHSNTLQV 131


>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 117

 Score = 52.6 bits (126), Expect = 2e-11
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 18  IEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTLIV 70
           + P     +   D     G +        ++GD V++V+G    +G TNT  V
Sbjct: 62  VVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASV 114


>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain
           {Leishmania mexicana [TaxId: 5665]}
          Length = 141

 Score = 52.3 bits (125), Expect = 5e-11
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 18  IEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTLIV 70
            +          + RVA G+++ + + ++  GD  +V+    K  G+ N   +
Sbjct: 85  FDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTRI 137


>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain
           {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 135

 Score = 52.0 bits (124), Expect = 5e-11
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 19  EPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTLIV 70
           +P    W  DVD RV   +  G+ R F  +GD VIV+TGW+ G+GFTNT+ V
Sbjct: 80  DPVQEAWAEDVDLRVNLAMNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRV 131


>d1l7la_ b.18.1.16 (A:) PA-IL, galactose-binding lectin 1
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 121

 Score = 25.8 bits (56), Expect = 0.37
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 28 DVDTRVAHG-IKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTLI 69
          DV T VA G   YG  +K+  QGD      G      F   L+
Sbjct: 24 DVITIVAAGWASYGPTQKWGPQGDREHPDQGLICHDAFCGALV 66


>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
           C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 298

 Score = 24.3 bits (52), Expect = 1.3
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 40  GRDRKFLNQGDPVIVVTGWKKGAGF 64
           G+ R FL  GD  +++TG  +G G+
Sbjct: 260 GQTRTFLLDGD-EVIITGHCQGDGY 283


>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP
          2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 378

 Score = 24.1 bits (52), Expect = 1.7
 Identities = 3/42 (7%), Positives = 12/42 (28%)

Query: 7  EEIPKQVLIGKIEPSPADWLRDVDTRVAHGIKYGRDRKFLNQ 48
              + +   KI+    + +   +            +  L++
Sbjct: 33 SGEAQHIEWSKIQTPTDEIVVPYEKMTPVSQDVAETKNLLDK 74


>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
           10760]}
          Length = 882

 Score = 23.6 bits (50), Expect = 2.8
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 24  DWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVT 56
           +WL+     +A  +K  +  + L +   V  VT
Sbjct: 696 NWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVT 728


>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
          biosynthesis protein MobB {Escherichia coli [TaxId:
          562]}
          Length = 170

 Score = 22.6 bits (47), Expect = 5.2
 Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 2/19 (10%)

Query: 51 PVIVVTGWKKGAGFTNTLI 69
          P++    W  G G T TL+
Sbjct: 3  PLLAFAAW-SGTGKT-TLL 19


>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 239

 Score = 22.3 bits (46), Expect = 8.7
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 21  SPADWLRDVDTRVAHGIKYGRDRKFL 46
           + A W        A G  +GR R  L
Sbjct: 202 TSAHWQVIDAFERAAGEPHGRPRVKL 227


>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus
          cuniculus) [TaxId: 9986]}
          Length = 111

 Score = 21.9 bits (46), Expect = 8.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 52 VIVVTGWKKGAGFTNTLIV 70
          V V TG    AG  N + +
Sbjct: 5  VCVSTGASIYAGSKNKVEL 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 283,638
Number of extensions: 10926
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 14
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)