Query psy2553
Match_columns 134
No_of_seqs 107 out of 340
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:11:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_X RPL32, 60S ribosomal pr 100.0 4.5E-75 1.6E-79 439.2 11.8 133 1-133 1-133 (134)
2 3iz5_h 60S ribosomal protein L 100.0 2.9E-75 1E-79 439.7 3.7 133 2-134 1-133 (133)
3 3u5e_e 60S ribosomal protein L 100.0 8.6E-74 2.9E-78 430.4 10.4 128 5-132 3-130 (130)
4 2zkr_y 60S ribosomal protein L 100.0 8E-74 2.7E-78 432.7 5.2 134 1-134 2-135 (135)
5 3j21_b PFEL32, 50S ribosomal p 100.0 2.1E-62 7.1E-67 368.5 8.0 114 11-126 15-130 (130)
6 1vq8_Y 50S ribosomal protein L 100.0 7.2E-44 2.5E-48 288.8 8.4 112 13-126 123-234 (241)
7 3nkl_A UDP-D-quinovosamine 4-d 42.7 34 0.0012 22.9 4.3 46 77-122 50-96 (141)
8 3v7e_A Ribosome-associated pro 39.7 52 0.0018 21.3 4.7 46 77-122 12-57 (82)
9 1sb0_B Protein C-MYB; CREB-bin 39.2 11 0.00039 20.6 1.0 13 80-92 4-16 (26)
10 2dt5_A AT-rich DNA-binding pro 31.2 51 0.0017 25.1 4.0 45 76-123 125-170 (211)
11 3h5t_A Transcriptional regulat 30.7 20 0.00067 27.8 1.6 29 100-128 34-62 (366)
12 3e3m_A Transcriptional regulat 29.7 11 0.00038 29.2 0.0 59 69-128 6-64 (355)
13 2l8n_A Transcriptional repress 28.7 24 0.00082 22.3 1.5 26 101-127 35-60 (67)
14 2p0v_A Hypothetical protein BT 28.5 5.9 0.0002 34.9 -2.0 79 33-117 220-308 (489)
15 3on1_A BH2414 protein; structu 28.4 1.1E+02 0.0036 20.3 4.9 44 79-122 21-64 (101)
16 3kjx_A Transcriptional regulat 28.4 26 0.0009 26.8 1.9 27 101-128 36-62 (344)
17 3v7q_A Probable ribosomal prot 27.3 1.3E+02 0.0043 20.0 5.1 44 79-122 22-65 (101)
18 1jx6_A LUXP protein; protein-l 27.2 17 0.00059 27.6 0.7 26 101-127 13-38 (342)
19 3n3f_A Collagen alpha-1(XV) ch 27.2 13 0.00044 23.4 -0.0 20 17-36 24-43 (54)
20 3dnf_A ISPH, LYTB, 4-hydroxy-3 26.8 53 0.0018 27.0 3.6 46 77-127 40-97 (297)
21 3cpq_A 50S ribosomal protein L 26.5 1.2E+02 0.004 20.5 4.9 46 77-122 22-67 (110)
22 1uxc_A FRUR (1-57), fructose r 26.2 33 0.0011 21.4 1.8 29 101-130 29-58 (65)
23 3bil_A Probable LACI-family tr 26.1 14 0.00048 28.6 0.0 27 100-127 33-59 (348)
24 3keo_A Redox-sensing transcrip 24.9 74 0.0025 24.5 3.9 46 76-123 132-178 (212)
25 2lbw_A H/ACA ribonucleoprotein 24.5 1.7E+02 0.0059 20.1 5.5 46 77-122 21-67 (121)
26 3hsh_A Endostatin, collagen al 24.3 16 0.00054 23.2 -0.0 21 16-36 25-45 (56)
27 2hsg_A Glucose-resistance amyl 21.5 20 0.00069 27.3 0.1 27 100-127 27-53 (332)
No 1
>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X
Probab=100.00 E-value=4.5e-75 Score=439.16 Aligned_cols=133 Identities=50% Similarity=0.925 Sum_probs=124.7
Q ss_pred CCCCCCCCCcccccCCCCcccccccccccccccccCCCcCCchhhhhccCCCCCCCCCCCCCccccccCCCCceEEEEec
Q psy2553 1 MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHN 80 (134)
Q Consensus 1 ~~~~pl~~~kivkkr~~~F~R~~sdr~~rik~sWRKPrGiDnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsGf~~~lV~n 80 (134)
|+++||++|+||||+|++|+|||||+|++|++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||
T Consensus 1 ~~~~~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~N 80 (134)
T 4a17_X 1 MAIKPVAHKKIIKKRTKKFVRFESEDFAKLDSSWRRPRGIDNRVRRRFRGQRRMAKIGFASDAATKHLLPNGFKKFLIRN 80 (134)
T ss_dssp --CCCCCCCCCCCSCCSCCCCTTTTTCSSSCCSCCCCCCSSCTGGGTCTTSCCCCCSTTSCCTTTTTBCTTSCEEEEECS
T ss_pred CCccCCCCCcceeccCCCccccccccccccCCCCCCCCCcccchhhcccCccCCCccCcCCChhhcccCCCCCeEEEeCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCceecCCcceeeccc
Q psy2553 81 VKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEEN 133 (134)
Q Consensus 81 ~keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~N~~arl~~~e~ 133 (134)
++|||+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++|||
T Consensus 81 vkeLe~Llm~n~~~aaeIAh~Vs~rkR~~IverA~qL~irV~Np~arl~~ee~ 133 (134)
T 4a17_X 81 PADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANAKVKVQES 133 (134)
T ss_dssp SHHHHHHHHHTTTEEEEECTTSCHHHHHHHHHHHHHHTCCBSSCCCC------
T ss_pred HHHHHHHhcCCcccEEEEecCcccccHHHHHHHHHHhCCcccCCcccceeccc
Confidence 99999999999999999999999999999999999999999999999999998
No 2
>3iz5_h 60S ribosomal protein L32 (L32E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_h 2zkr_9
Probab=100.00 E-value=2.9e-75 Score=439.74 Aligned_cols=133 Identities=65% Similarity=1.003 Sum_probs=131.4
Q ss_pred CCCCCCCCcccccCCCCcccccccccccccccccCCCcCCchhhhhccCCCCCCCCCCCCCccccccCCCCceEEEEech
Q psy2553 2 SIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 81 (134)
Q Consensus 2 ~~~pl~~~kivkkr~~~F~R~~sdr~~rik~sWRKPrGiDnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsGf~~~lV~n~ 81 (134)
|+.||++|+||||+|++|+|||||+|++|++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||+
T Consensus 1 m~~~~~~~kivKKrtkkF~Rh~sdry~ri~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~Nv 80 (133)
T 3iz5_h 1 MAVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNV 80 (133)
T ss_dssp CHHHHHHHHHTTCCCSCCCCTTGGGSSSSCSSCCCCCSTTCHHHHTCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSH
T ss_pred CCcCCCCCcceeccCCCccccccccccccCCCCCCCCCcccchhccccCCcCCCccCCCCChhhcccCCCCCeEEEeCCH
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCceecCCcceeecccC
Q psy2553 82 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 134 (134)
Q Consensus 82 keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~N~~arl~~~e~e 134 (134)
+|||+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++||||
T Consensus 81 keLe~L~m~n~~~aaeIAh~Vs~rkR~~IverA~qL~irV~Np~arl~~ee~e 133 (133)
T 3iz5_h 81 SELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133 (133)
T ss_dssp HHHHHHHHHTTSEEEEECSSSCHHHHHHHHHHHHHHTCCSSHHHHHHHHHCCC
T ss_pred HHHHHHhcCCCccEEEEecCcccccHHHHHHHHHHhCCcccCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999997
No 3
>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0
Probab=100.00 E-value=8.6e-74 Score=430.38 Aligned_cols=128 Identities=48% Similarity=0.793 Sum_probs=125.7
Q ss_pred CCCCCcccccCCCCcccccccccccccccccCCCcCCchhhhhccCCCCCCCCCCCCCccccccCCCCceEEEEechhhh
Q psy2553 5 PVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKEL 84 (134)
Q Consensus 5 pl~~~kivkkr~~~F~R~~sdr~~rik~sWRKPrGiDnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsGf~~~lV~n~keL 84 (134)
||++|+||||+|++|+|||||+|++|++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||++||
T Consensus 3 ~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~NvkeL 82 (130)
T 3u5e_e 3 SLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDL 82 (130)
T ss_dssp CCCCSCCCCSCCSCCCCTTTTTCTTSCSSCCCCCCSSCTTTTTCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSHHHH
T ss_pred CCCCCceeeccCCCccccccccccccCCCCCCCCCcccchhccccCCcCCCcCCCCCChhhcccCCCCCceEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCceecCCcceeecc
Q psy2553 85 EVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEE 132 (134)
Q Consensus 85 e~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~N~~arl~~~e 132 (134)
|+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++||
T Consensus 83 e~Llm~n~~~~aeIAh~Vs~rkR~~IverA~ql~irV~Np~arl~~ee 130 (130)
T 3u5e_e 83 ETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRLALEA 130 (130)
T ss_dssp GGGTTCTTTEEEEECTTCCHHHHHHHHHHHHHHTCCBSCTTTTCCC--
T ss_pred HHHhcCCcccEEEEecccccccHHHHHHHHHHhCCcccCCCccccccC
Confidence 999999999999999999999999999999999999999999999997
No 4
>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=8e-74 Score=432.67 Aligned_cols=134 Identities=72% Similarity=1.146 Sum_probs=59.5
Q ss_pred CCCCCCCCCcccccCCCCcccccccccccccccccCCCcCCchhhhhccCCCCCCCCCCCCCccccccCCCCceEEEEec
Q psy2553 1 MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHN 80 (134)
Q Consensus 1 ~~~~pl~~~kivkkr~~~F~R~~sdr~~rik~sWRKPrGiDnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsGf~~~lV~n 80 (134)
|++.||++++|+||+|++|+|||||+|++|++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||
T Consensus 2 m~~~~~~~~kivKkr~~kF~R~~sdry~rl~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~k~tR~l~PsGf~~~lV~N 81 (135)
T 2zkr_y 2 AALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81 (135)
T ss_dssp ---CTTTTTSSSSSCCCC-CCTTTTTCTTSCC-CCCCCCSSCTTTCC-CCSCCCSCTTSCCCTTCC--------------
T ss_pred CCCcCCCCccccccCCCcccCcchhhccccCccccCCCCCcccceeeccCCCCCCcccCCCChhhcccCCCCCeEEEeCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCceecCCcceeecccC
Q psy2553 81 VKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 134 (134)
Q Consensus 81 ~keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~N~~arl~~~e~e 134 (134)
++|||+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++||+|
T Consensus 82 vkeLe~Llm~n~~~aaeIah~Vs~kKR~~IverA~eL~IkV~N~~arl~~~e~e 135 (135)
T 2zkr_y 82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135 (135)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHhcCCCceEEEEecccccccHHHHHHHHHHhCCeeeCCccccchhccC
Confidence 999999999999999999999999999999999999999999999999999997
No 5
>3j21_b PFEL32, 50S ribosomal protein L32E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-62 Score=368.54 Aligned_cols=114 Identities=40% Similarity=0.728 Sum_probs=110.7
Q ss_pred ccccCCCCcccccccccccccc--cccCCCcCCchhhhhccCCCCCCCCCCCCCccccccCCCCceEEEEechhhhHHHh
Q psy2553 11 IVKKRRKVFIRHQSDRYKKLHR--SWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLM 88 (134)
Q Consensus 11 ivkkr~~~F~R~~sdr~~rik~--sWRKPrGiDnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsGf~~~lV~n~keLe~L~ 88 (134)
.+|+++++|+|||||+|++|++ |||||+||||+|||+|+|+++||+||||||++|||||||||++|+||||+|||+|
T Consensus 15 ~~k~k~pkF~R~~sdr~~ri~~~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~NvkeLe~L- 93 (130)
T 3j21_b 15 RLKRKKPRFLRQEWWRYPKFKNDPKWRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL- 93 (130)
T ss_dssp HHHHCCCCCCCSCCSSCSSSCSSCCCCCCCCSSCHHHHTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEECSTTTTTTC-
T ss_pred HHhhcCCCeeccccccceecCCCCCCCCCCCcccchhccccCCCCCCccCCCCcccccccCCCCCceEEecCHHHHHhh-
Confidence 4578899999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccceEEeeccCCcccHHHHHHHHHhcCCceecCCc
Q psy2553 89 MQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNA 126 (134)
Q Consensus 89 ~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~N~~a 126 (134)
||++|||||||+||++||++|+|+|+||||+||||+.
T Consensus 94 -~~~~~~aeIAh~Vs~rkR~~IverA~qL~ikV~Np~~ 130 (130)
T 3j21_b 94 -DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLNPRV 130 (130)
T ss_dssp -CTTTEEEEECTTCCHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred -CCCCceEEEecCcccccHHHHHHHHHHhCCcccCCCC
Confidence 9999999999999999999999999999999999973
No 6
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=100.00 E-value=7.2e-44 Score=288.83 Aligned_cols=112 Identities=30% Similarity=0.469 Sum_probs=109.9
Q ss_pred ccCCCCcccccccccccccccccCCCcCCchhhhhccCCCCCCCCCCCCCccccccCCCCceEEEEechhhhHHHhhcCc
Q psy2553 13 KKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNR 92 (134)
Q Consensus 13 kkr~~~F~R~~sdr~~rik~sWRKPrGiDnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsGf~~~lV~n~keLe~L~~~~~ 92 (134)
++++|+|+|||||+|+||+++||+|+||||+||++|+|+++||+||||||++||+||||||+.|+|||++||++| +|+
T Consensus 123 ~~~~~efvr~d~d~~~~~~~~wrkP~g~d~~vr~~f~g~~~~~~ig~~s~~k~r~~lp~G~~~~~v~n~~dL~~l--~~~ 200 (241)
T 1vq8_Y 123 RVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGV--DGD 200 (241)
T ss_dssp HHCCCCCCCTTGGGCTTSCSSCCCCCCTTCTTTTTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEESSGGGGTTC--CTT
T ss_pred ccCCCCeeccchhheeecccCcCCCCCccHHHHHHHhCCCCCCccccCCCCceEEECCCCCEeeeccCHhHhhcc--CcH
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred cceEEeeccCCcccHHHHHHHHHhcCCceecCCc
Q psy2553 93 KYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNA 126 (134)
Q Consensus 93 ~~~~~Ia~~Vg~kkr~~I~erA~el~irV~N~~a 126 (134)
+||++|+|+||+|+|.+|+++|+|+||+||||++
T Consensus 201 ~~~a~i~~~tGskkh~~i~~~A~~~gikv~n~~~ 234 (241)
T 1vq8_Y 201 TEAVRIASKVGARKRERIEEEAEDAGIRVLNPTY 234 (241)
T ss_dssp TEEEEECTTSCHHHHHHHHHHHHHTTCCBSSCCE
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHcCCcccCCCc
Confidence 9999999999999999999999999999999987
No 7
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=42.68 E-value=34 Score=22.91 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=31.8
Q ss_pred EEechhhhHHHhhcCccceEEeecc-CCcccHHHHHHHHHhcCCcee
Q psy2553 77 VVHNVKELEVLMMQNRKYCAEIGHA-VSSKKRRDIVQRAQQLSIRLT 122 (134)
Q Consensus 77 lV~n~keLe~L~~~~~~~~~~Ia~~-Vg~kkr~~I~erA~el~irV~ 122 (134)
.|...+||+.++....-..+-||-. .....+.+|++.+.++|++|.
T Consensus 50 pV~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~ 96 (141)
T 3nkl_A 50 TIYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVL 96 (141)
T ss_dssp EEECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 3444888888765444456666643 334567899999999999875
No 8
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=39.74 E-value=52 Score=21.27 Aligned_cols=46 Identities=9% Similarity=0.103 Sum_probs=36.6
Q ss_pred EEechhhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCcee
Q psy2553 77 VVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLT 122 (134)
Q Consensus 77 lV~n~keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~ 122 (134)
++.-.++....+...+...+-||++++..-...|...|.+.+|.+.
T Consensus 12 ~~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~ 57 (82)
T 3v7e_A 12 IIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVS 57 (82)
T ss_dssp EEESHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEE
T ss_pred eeEcHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3444556666666678889999999999888899999999999764
No 9
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=39.15 E-value=11 Score=20.59 Aligned_cols=13 Identities=46% Similarity=0.815 Sum_probs=10.3
Q ss_pred chhhhHHHhhcCc
Q psy2553 80 NVKELEVLMMQNR 92 (134)
Q Consensus 80 n~keLe~L~~~~~ 92 (134)
.++|||.|+|..+
T Consensus 4 riKElELLLMS~E 16 (26)
T 1sb0_B 4 RIKELELLLMSTE 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH
Confidence 3689999999743
No 10
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=31.22 E-value=51 Score=25.08 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=32.8
Q ss_pred EEEechhhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCc-eec
Q psy2553 76 VVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR-LTN 123 (134)
Q Consensus 76 ~lV~n~keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~ir-V~N 123 (134)
+.|....||+.++.. .-.++-|| +.+-.+.+|++.+.+.|++ |+|
T Consensus 125 v~V~~~~dl~ell~~-~ID~ViIA--~Ps~~~~ei~~~l~~aGi~~Iln 170 (211)
T 2dt5_A 125 GVIEHVDLLPQRVPG-RIEIALLT--VPREAAQKAADLLVAAGIKGILN 170 (211)
T ss_dssp EEEEEGGGHHHHSTT-TCCEEEEC--SCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CeeecHHhHHHHHHc-CCCEEEEe--CCchhHHHHHHHHHHcCCCEEEE
Confidence 345568999988644 45555555 4445677999999999998 777
No 11
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=30.71 E-value=20 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=18.5
Q ss_pred ccCCcccHHHHHHHHHhcCCceecCCcce
Q psy2553 100 HAVSSKKRRDIVQRAQQLSIRLTNGNARI 128 (134)
Q Consensus 100 ~~Vg~kkr~~I~erA~el~irV~N~~arl 128 (134)
..|+...|+.|.+-|+|||...-|+.||-
T Consensus 34 ~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~ 62 (366)
T 3h5t_A 34 EQLSAELRQRILDTAEDMGYLGPDPVARS 62 (366)
T ss_dssp GGSCHHHHHHHHHHHHHTTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 36899999999999999999548888864
No 12
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=29.69 E-value=11 Score=29.17 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCCceEEEEechhhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCceecCCcce
Q psy2553 69 LPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARI 128 (134)
Q Consensus 69 ~PsGf~~~lV~n~keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~N~~arl 128 (134)
++.|-+.+-+..+.++-.+....=|.+..=...|+...|+.|.+-|+|||. +.|+.||-
T Consensus 6 ~~~g~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY-~pn~~a~~ 64 (355)
T 3e3m_A 6 RKPGHRPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNY-VPDQVAGS 64 (355)
T ss_dssp ------------------------------------------------------------
T ss_pred cCCCCCCCcHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCC-CcCHHHHh
Confidence 445555566666666665543333333333467999999999999999999 57877764
No 13
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=28.74 E-value=24 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=18.7
Q ss_pred cCCcccHHHHHHHHHhcCCceecCCcc
Q psy2553 101 AVSSKKRRDIVQRAQQLSIRLTNGNAR 127 (134)
Q Consensus 101 ~Vg~kkr~~I~erA~el~irV~N~~ar 127 (134)
.|+...+..|.+-|.+||.. .|..||
T Consensus 35 ~vs~~t~~rV~~~a~~lgY~-pn~~a~ 60 (67)
T 2l8n_A 35 KVSQATRNRVEKAAREVGYL-PQPMGR 60 (67)
T ss_dssp CSCHHHHHHHHHHHHHHCCC-C-----
T ss_pred CCCHHHHHHHHHHHHHhCCC-ccHHHH
Confidence 48889999999999999994 676665
No 14
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=28.54 E-value=5.9 Score=34.90 Aligned_cols=79 Identities=22% Similarity=0.213 Sum_probs=47.3
Q ss_pred cccCCC--cCCchhhhhccCCCCCCCCCCCCCccccccCCCCceEE--------EEechhhhHHHhhcCccceEEeeccC
Q psy2553 33 SWRKPK--GIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKV--------VVHNVKELEVLMMQNRKYCAEIGHAV 102 (134)
Q Consensus 33 sWRKPr--GiDnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsGf~~~--------lV~n~keLe~L~~~~~~~~~~Ia~~V 102 (134)
.|+.+. |+=.=+|.--.+.--+++-|+|+|-+.=||.-|||++. +|++--=.-+-| .++++|+..+
T Consensus 220 eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tGLi~S~fRPSDDa~~yg~~ipSN~~a~v~L----~~aaeia~~v 295 (489)
T 2p0v_A 220 QQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGLIASAFRPSDDATTFQFLVPSNFFAVTSL----RKAAEILNTV 295 (489)
T ss_dssp TTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSSCCCCSBCTTSCBCSSSEEHHHHHHHHHHH----HHHHHHHHHT
T ss_pred HhcccCCCCCceEeecCCCcccccccCCCCCccCCCCceeCCCCCCCcchhcCcchHHHHHHHHHH----HHHHHHHHHh
Confidence 355542 43333333345666778889999977779988888653 444332222222 4788999888
Q ss_pred CcccHHHHHHHHHhc
Q psy2553 103 SSKKRRDIVQRAQQL 117 (134)
Q Consensus 103 g~kkr~~I~erA~el 117 (134)
+.. .++.+++.++
T Consensus 296 ~~d--~~la~~~~~l 308 (489)
T 2p0v_A 296 NRK--PALAKECTAL 308 (489)
T ss_dssp SCC--HHHHHHHHHH
T ss_pred ccC--HHHHHHHHHH
Confidence 832 3445555444
No 15
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=28.43 E-value=1.1e+02 Score=20.32 Aligned_cols=44 Identities=2% Similarity=0.114 Sum_probs=34.4
Q ss_pred echhhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCcee
Q psy2553 79 HNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLT 122 (134)
Q Consensus 79 ~n~keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~ 122 (134)
.-.++....+...+-..+-||+.++..-+..|...|.+.+|.+.
T Consensus 21 ~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~ 64 (101)
T 3on1_A 21 TGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVK 64 (101)
T ss_dssp ESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEE
T ss_pred ECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 33444445555677889999999999989999999999998765
No 16
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.40 E-value=26 Score=26.81 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.7
Q ss_pred cCCcccHHHHHHHHHhcCCceecCCcce
Q psy2553 101 AVSSKKRRDIVQRAQQLSIRLTNGNARI 128 (134)
Q Consensus 101 ~Vg~kkr~~I~erA~el~irV~N~~arl 128 (134)
.|+...|+.|.+.|+|||. +.|+.||-
T Consensus 36 ~vs~~tr~rV~~~~~~lgY-~pn~~a~~ 62 (344)
T 3kjx_A 36 DVSDATRARVLAAAKELGY-VPNKIAGA 62 (344)
T ss_dssp CCCHHHHHHHHHHHHHHTC-CCCCCCSC
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 6899999999999999998 57887764
No 17
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=27.33 E-value=1.3e+02 Score=20.04 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=34.5
Q ss_pred echhhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCcee
Q psy2553 79 HNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLT 122 (134)
Q Consensus 79 ~n~keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~ 122 (134)
.-.++....+...+...+-||+.++..-+..|...|.+.+|.+.
T Consensus 22 ~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~ 65 (101)
T 3v7q_A 22 SGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYK 65 (101)
T ss_dssp ESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEE
T ss_pred cchhhhHHHHhcCceeEEEEeccccccchhhhcccccccCCCee
Confidence 33444445555678889999999999999999999999998654
No 18
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=27.23 E-value=17 Score=27.62 Aligned_cols=26 Identities=4% Similarity=-0.089 Sum_probs=22.1
Q ss_pred cCCcccHHHHHHHHHhcCCceecCCcc
Q psy2553 101 AVSSKKRRDIVQRAQQLSIRLTNGNAR 127 (134)
Q Consensus 101 ~Vg~kkr~~I~erA~el~irV~N~~ar 127 (134)
+++...|+.|.+-|+|||. +.|+.||
T Consensus 13 ~~s~~tr~rV~~aa~elgY-~pn~~Ar 38 (342)
T 1jx6_A 13 DEFPEQRNLTNALSEAVRA-QPVPLSK 38 (342)
T ss_dssp HHCHHHHHHHHHHHHHHHS-CCCCCSS
T ss_pred HhcHHHHHHHHHHHHHhcC-CCCcccc
Confidence 4677899999999999999 5787776
No 19
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=27.17 E-value=13 Score=23.41 Aligned_cols=20 Identities=15% Similarity=0.705 Sum_probs=17.1
Q ss_pred CCcccccccccccccccccC
Q psy2553 17 KVFIRHQSDRYKKLHRSWRK 36 (134)
Q Consensus 17 ~~F~R~~sdr~~rik~sWRK 36 (134)
--|.-..++-|+|+...||+
T Consensus 24 L~yv~d~~eLyiRVr~Gwr~ 43 (54)
T 3n3f_A 24 FIYLRDSTEFFIRVRDGWKK 43 (54)
T ss_dssp EEEETTTTEEEEEETTEEEE
T ss_pred EEEEEecceEEEEEcCceee
Confidence 34777888999999999987
No 20
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=26.78 E-value=53 Score=26.98 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=31.9
Q ss_pred EEechhhhHHHhhc----------CccceEEe--eccCCcccHHHHHHHHHhcCCceecCCcc
Q psy2553 77 VVHNVKELEVLMMQ----------NRKYCAEI--GHAVSSKKRRDIVQRAQQLSIRLTNGNAR 127 (134)
Q Consensus 77 lV~n~keLe~L~~~----------~~~~~~~I--a~~Vg~kkr~~I~erA~el~irV~N~~ar 127 (134)
+|||...++.|-.. +. -+..| ||.|+ .++.+.|++.|+.|++.++=
T Consensus 40 IVHN~~Vv~~L~~~Gv~~v~~~ev~~-g~~VIirAHGv~----~~v~~~a~~rgl~iiDATCP 97 (297)
T 3dnf_A 40 IIHNPQEVNRLKNLGVFPSQGEEFKE-GDTVIIRSHGIP----PEKEEALRKKGLKVIDATCP 97 (297)
T ss_dssp SSSCHHHHHHHHHHTEEECCSSCCCT-TCEEEECTTCCC----HHHHHHHHHTTCEEEECCCH
T ss_pred cccCHHHHHHHHhCCCEEechhhCCC-CCEEEEECCCCC----HHHHHHHHHCCCEEEeCCCc
Confidence 58999777776310 11 12233 78877 57789999999999998863
No 21
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=26.53 E-value=1.2e+02 Score=20.54 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=36.1
Q ss_pred EEechhhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCcee
Q psy2553 77 VVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLT 122 (134)
Q Consensus 77 lV~n~keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~irV~ 122 (134)
++.-.++....+...+...+-||+.++..-...|...|.+.+|.+.
T Consensus 22 l~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~ 67 (110)
T 3cpq_A 22 VILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVY 67 (110)
T ss_dssp EEESHHHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEE
T ss_pred eeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3444555555555678889999999999999999999999998754
No 22
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=26.25 E-value=33 Score=21.41 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=19.5
Q ss_pred cCCcccHHHHHHHHHhcCCceecCCcc-eee
Q psy2553 101 AVSSKKRRDIVQRAQQLSIRLTNGNAR-IRT 130 (134)
Q Consensus 101 ~Vg~kkr~~I~erA~el~irV~N~~ar-l~~ 130 (134)
.|+...++.|.+-|++||.. .|..|| |++
T Consensus 29 ~vs~et~~rI~~aa~~lgY~-pn~~a~~l~~ 58 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREHNYH-PNAVAAGLRL 58 (65)
T ss_dssp TCTTHHHHHHHHHHHHHTCC-CC--------
T ss_pred CCCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 58889999999999999994 666664 443
No 23
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=26.09 E-value=14 Score=28.64 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=0.0
Q ss_pred ccCCcccHHHHHHHHHhcCCceecCCcc
Q psy2553 100 HAVSSKKRRDIVQRAQQLSIRLTNGNAR 127 (134)
Q Consensus 100 ~~Vg~kkr~~I~erA~el~irV~N~~ar 127 (134)
..|+...|+.|.+-|+|||. +.|+.||
T Consensus 33 ~~Vs~~tr~rV~~aa~~lgY-~pn~~ar 59 (348)
T 3bil_A 33 PAVAASTRERIQQLASDLGY-RANAQAR 59 (348)
T ss_dssp ----------------------------
T ss_pred CCCCHHHHHHHHHHHHHhCC-CcCHHHH
Confidence 36899999999999999997 6788776
No 24
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=24.88 E-value=74 Score=24.48 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=31.6
Q ss_pred EEEechhhhHHHhhcCccceEEeeccCCcccHHHHHHHHHhcCCc-eec
Q psy2553 76 VVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR-LTN 123 (134)
Q Consensus 76 ~lV~n~keLe~L~~~~~~~~~~Ia~~Vg~kkr~~I~erA~el~ir-V~N 123 (134)
+.|...+||+.++....-..+- =++.+...+++.+++.+.||+ |+|
T Consensus 132 vpV~~~~dL~~~v~~~~Id~vI--IAvPs~~aq~v~d~lv~~GIk~I~n 178 (212)
T 3keo_A 132 IPVYGISTINDHLIDSDIETAI--LTVPSTEAQEVADILVKAGIKGILS 178 (212)
T ss_dssp CBEEEGGGHHHHC-CCSCCEEE--ECSCGGGHHHHHHHHHHHTCCEEEE
T ss_pred eEEeCHHHHHHHHHHcCCCEEE--EecCchhHHHHHHHHHHcCCCEEEE
Confidence 4556689999986443344444 445666788999999999996 344
No 25
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=24.48 E-value=1.7e+02 Score=20.07 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=35.9
Q ss_pred EEechhhhHHHhhcCccceEEeeccCCccc-HHHHHHHHHhcCCcee
Q psy2553 77 VVHNVKELEVLMMQNRKYCAEIGHAVSSKK-RRDIVQRAQQLSIRLT 122 (134)
Q Consensus 77 lV~n~keLe~L~~~~~~~~~~Ia~~Vg~kk-r~~I~erA~el~irV~ 122 (134)
++.-.++....+...+...+-||++++... ...|...|.+.+|.+.
T Consensus 21 l~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~ 67 (121)
T 2lbw_A 21 VKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYI 67 (121)
T ss_dssp EEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEE
T ss_pred ccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEE
Confidence 444555555555567889999999999975 8889999999999763
No 26
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Probab=24.25 E-value=16 Score=23.22 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=17.2
Q ss_pred CCCcccccccccccccccccC
Q psy2553 16 RKVFIRHQSDRYKKLHRSWRK 36 (134)
Q Consensus 16 ~~~F~R~~sdr~~rik~sWRK 36 (134)
+--|.-..++-|+|+...||+
T Consensus 25 tL~yv~d~~eLyiRVr~Gwr~ 45 (56)
T 3hsh_A 25 WLIFVAEQEELYVRVQNGFRK 45 (56)
T ss_dssp CEEEETTTTEEEEEETTEEEE
T ss_pred eEEEEEecceEEEEEcCceee
Confidence 334777788999999999987
No 27
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=21.49 E-value=20 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=22.6
Q ss_pred ccCCcccHHHHHHHHHhcCCceecCCcc
Q psy2553 100 HAVSSKKRRDIVQRAQQLSIRLTNGNAR 127 (134)
Q Consensus 100 ~~Vg~kkr~~I~erA~el~irV~N~~ar 127 (134)
..|+...|+.|.+-|+|||. +.|+.||
T Consensus 27 ~~vs~~tr~rV~~aa~~lgY-~pn~~ar 53 (332)
T 2hsg_A 27 PNVKPSTRKKVLETIERLGY-RPNAVAR 53 (332)
T ss_dssp TTSCHHHHHHHHHHHHHHTC-CSCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC-CcCHHHH
Confidence 36899999999999999997 5676655
Done!