RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2553
         (134 letters)



>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 142

 Score =  146 bits (370), Expect = 6e-47
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 13  KKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNH 72
           +  +  F R    + K++  SWRKP+G  ++ RR  KG+      G+ S    R   P+ 
Sbjct: 28  RVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSG 87

Query: 73  FLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 123
           F +V VHNV +LE   +        I   V ++KR  I + A+   IR+ N
Sbjct: 88  FEEVRVHNVDDLE--GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 136


>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458
           {Haemophilus influenzae [TaxId: 727]}
          Length = 184

 Score = 24.1 bits (52), Expect = 6.1
 Identities = 10/47 (21%), Positives = 17/47 (36%)

Query: 27  YKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHF 73
           +    +  +     D     R     LM  +GYG+  +  H  PN +
Sbjct: 102 FNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAY 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 507,998
Number of extensions: 22751
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 4
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.6 bits)