Query psy2555
Match_columns 90
No_of_seqs 103 out of 793
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:13:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dah_A Sporulation kinase D; a 71.5 15 0.0005 24.0 6.3 69 6-88 72-144 (217)
2 2v2f_A Penicillin binding prot 62.4 3.7 0.00013 19.2 1.4 15 5-19 5-19 (26)
3 3s52_A Putative fumarylacetoac 60.8 8.4 0.00029 26.9 3.6 53 12-67 154-207 (221)
4 3l53_A Putative fumarylacetoac 58.8 9.2 0.00031 26.8 3.5 54 12-68 152-206 (224)
5 1saw_A Hypothetical protein FL 58.2 7 0.00024 27.2 2.8 42 13-57 154-195 (225)
6 1nkq_A Hypothetical 28.8 kDa p 58.0 2.6 8.8E-05 30.4 0.5 43 13-58 177-219 (259)
7 2q18_X 2-keto-3-deoxy-D-arabin 57.2 6.3 0.00022 28.6 2.4 41 13-55 215-256 (293)
8 1ne8_A Conserved hypothetical 56.0 6.2 0.00021 24.2 2.0 16 44-59 3-19 (117)
9 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 54.8 7.9 0.00027 27.6 2.6 43 13-56 195-240 (267)
10 3lzk_A Fumarylacetoacetate hyd 54.0 8 0.00027 29.3 2.6 43 13-57 245-287 (359)
11 1m1f_A KID toxin protein; toxi 52.5 7.7 0.00026 23.6 2.0 15 45-59 1-16 (110)
12 3rr6_A Putative uncharacterize 52.2 11 0.00039 27.2 3.1 51 13-66 194-245 (265)
13 2dfu_A Probable 2-hydroxyhepta 49.3 14 0.00046 26.6 3.1 52 13-67 190-242 (264)
14 1wzo_A HPCE; structural genomi 47.5 13 0.00044 26.2 2.7 51 13-66 176-227 (246)
15 3r6o_A 2-hydroxyhepta-2,4-dien 46.8 15 0.0005 27.6 3.0 42 13-57 245-286 (329)
16 2if6_A Hypothetical protein YI 46.5 11 0.00038 25.2 2.2 15 43-57 3-17 (186)
17 1ub4_A MAZF protein; toxin, an 46.1 8.7 0.0003 23.5 1.5 16 44-59 5-21 (110)
18 2wqt_A 2-keto-4-pentenoate hyd 45.5 21 0.00071 25.5 3.6 44 12-56 188-234 (270)
19 1pcq_O Groes protein; chaperon 45.5 14 0.00048 23.1 2.4 16 44-59 58-73 (97)
20 3dnj_A ATP-dependent CLP prote 44.5 9.5 0.00032 23.3 1.4 11 49-59 8-18 (85)
21 4fdy_A Similar to lipoprotein, 42.7 25 0.00087 26.0 3.8 26 43-68 251-276 (313)
22 3o1f_A ATP-dependent CLP prote 42.6 11 0.00036 22.8 1.4 10 50-59 5-14 (81)
23 2w9r_A YLJA, ATP-dependent CLP 41.1 11 0.00039 23.9 1.4 11 49-59 29-39 (108)
24 3kw0_A Cysteine peptidase; str 38.7 16 0.00056 25.3 2.1 14 43-56 38-51 (214)
25 4hpe_A Putative cell WALL hydr 36.1 17 0.00057 26.6 1.9 18 43-60 247-264 (308)
26 2i6v_A General secretion pathw 36.1 16 0.00054 21.1 1.4 10 44-53 36-45 (87)
27 2a2l_A Unknown; structural gen 35.8 24 0.00083 23.0 2.5 76 5-87 35-120 (145)
28 3gt2_A Putative uncharacterize 34.8 11 0.00036 24.5 0.6 14 43-56 88-101 (142)
29 4dbf_A 2-hydroxyhepta-2,4-dien 34.5 27 0.00094 25.5 2.8 42 25-68 230-272 (288)
30 1gtt_A 4-hydroxyphenylacetate 34.0 31 0.0011 26.3 3.1 42 13-57 137-178 (429)
31 1yy3_A S-adenosylmethionine:tR 33.4 17 0.00058 27.7 1.6 15 43-57 52-66 (346)
32 1gtt_A 4-hydroxyphenylacetate 33.1 32 0.0011 26.1 3.1 53 13-68 356-409 (429)
33 4glq_A Methyl-accepting chemot 32.7 34 0.0012 22.1 2.8 74 8-89 35-124 (171)
34 1hyo_A Fumarylacetoacetate hyd 32.5 35 0.0012 26.3 3.2 42 14-57 313-354 (421)
35 2i4s_A General secretion pathw 32.1 20 0.00067 21.5 1.4 10 44-53 54-63 (105)
36 2yrt_A Chord containing protei 31.9 13 0.00044 22.4 0.6 13 70-88 37-49 (75)
37 1q44_A RARO47, steroid sulfotr 31.4 48 0.0016 23.9 3.7 22 38-61 58-79 (326)
38 1vky_A S-adenosylmethionine:tR 31.1 16 0.00056 27.8 1.1 15 43-57 60-74 (347)
39 2jyx_A Lipoprotein SPR; soluti 30.9 19 0.00063 23.1 1.2 13 43-55 66-78 (136)
40 2eaq_A LIM domain only protein 30.6 22 0.00075 20.2 1.4 10 44-53 45-54 (90)
41 1ynx_A Replication factor-A pr 30.6 29 0.00098 21.4 2.1 17 39-55 63-79 (114)
42 1wdi_A Hypothetical protein TT 30.6 17 0.00058 27.7 1.1 14 44-57 51-64 (345)
43 1qav_A Alpha-1 syntrophin (res 30.5 21 0.00073 20.3 1.4 11 43-53 47-57 (90)
44 2pkt_A PDZ and LIM domain prot 30.1 23 0.00077 20.3 1.4 10 44-53 44-53 (91)
45 2k1g_A Lipoprotein SPR; soluti 29.2 18 0.00062 23.5 1.0 13 43-55 66-78 (135)
46 2pa1_A PDZ and LIM domain prot 28.9 24 0.00084 19.9 1.4 10 44-53 43-52 (87)
47 2edp_A Fragment, shroom family 28.8 26 0.00089 20.6 1.6 11 43-53 52-62 (100)
48 1m5z_A GRIP, AMPA receptor int 28.2 26 0.00087 20.0 1.4 10 44-53 49-58 (91)
49 1vb7_A PDZ and LIM domain 2; P 28.2 25 0.00087 20.3 1.4 10 44-53 47-56 (94)
50 2xcm_E RAR1, cytosolic heat sh 27.9 21 0.00073 21.3 1.0 8 70-77 37-44 (74)
51 3bpu_A Membrane-associated gua 27.7 26 0.0009 19.8 1.4 10 44-53 42-51 (88)
52 2jxo_A Ezrin-radixin-moesin-bi 27.6 26 0.0009 20.3 1.4 10 44-53 50-59 (98)
53 2odd_A Protein CBFA2T1; MYND z 27.4 14 0.00048 20.6 0.2 15 44-58 3-17 (64)
54 2q3g_A PDZ and LIM domain prot 27.3 27 0.00093 19.8 1.4 10 44-53 44-53 (89)
55 2uzc_A Human pdlim5, PDZ and L 27.2 27 0.00094 19.7 1.4 10 44-53 44-53 (88)
56 2w4f_A Protein LAP4; structura 26.8 28 0.00095 20.0 1.4 10 44-53 51-60 (97)
57 1p0z_A Sensor kinase CITA; tra 26.6 61 0.0021 19.7 3.1 66 6-89 52-121 (131)
58 2eeg_A PDZ and LIM domain prot 26.4 29 0.00098 20.0 1.4 10 44-53 49-58 (94)
59 1ujv_A Membrane associated gua 26.3 29 0.001 20.3 1.5 11 43-53 46-56 (96)
60 2kv8_A RGS12, regulator of G-p 26.1 30 0.001 19.4 1.4 10 44-53 40-49 (83)
61 3bid_A UPF0339 protein NMB1088 25.9 73 0.0025 18.2 3.1 21 2-22 10-30 (64)
62 2he4_A Na(+)/H(+) exchange reg 25.9 30 0.001 19.7 1.4 10 44-53 45-54 (90)
63 1at0_A 17-hedgehog; developmen 25.8 24 0.00083 22.8 1.1 26 43-69 19-44 (145)
64 1jmc_A Protein (replication pr 25.8 77 0.0026 21.5 3.8 20 36-55 64-83 (246)
65 2f5y_A Regulator of G-protein 25.8 30 0.001 19.8 1.4 10 44-53 41-50 (91)
66 1zym_A Enzyme I; phosphotransf 25.5 32 0.0011 24.6 1.8 47 4-60 174-226 (258)
67 2vsp_A PDZ domain-containing p 25.5 31 0.001 19.7 1.4 10 44-53 44-53 (91)
68 1uhp_A Hypothetical protein KI 25.3 33 0.0011 20.3 1.6 10 44-53 59-68 (107)
69 2eeh_A PDZ domain-containing p 25.0 32 0.0011 20.1 1.5 10 44-53 53-62 (100)
70 1mfg_A ERB-B2 interacting prot 25.0 32 0.0011 19.8 1.4 10 44-53 51-60 (95)
71 2cs5_A Tyrosine-protein phosph 24.9 32 0.0011 20.7 1.5 10 44-53 60-69 (119)
72 2rcz_A Tight junction protein 24.9 33 0.0011 18.7 1.5 10 44-53 39-48 (81)
73 1rgw_A ZAsp protein; PDZ, cyph 24.8 25 0.00087 19.6 1.0 10 44-53 42-51 (85)
74 2w3g_A DOSS, two component sen 24.8 1.1E+02 0.0036 17.6 4.2 38 46-88 69-114 (153)
75 2q9v_A Membrane-associated gua 24.4 33 0.0011 19.4 1.4 10 44-53 45-54 (90)
76 3i18_A LMO2051 protein; alpha- 24.1 33 0.0011 20.2 1.4 10 44-53 23-32 (100)
77 2kjp_A Uncharacterized protein 24.1 34 0.0012 20.1 1.5 10 44-53 17-26 (91)
78 2zpm_A Regulator of sigma E pr 24.0 34 0.0012 19.4 1.4 10 44-53 21-30 (91)
79 2dls_A PDZ-rhogef, RHO guanine 24.0 34 0.0012 19.7 1.5 10 44-53 46-55 (93)
80 1g60_A Adenine-specific methyl 23.9 71 0.0024 22.0 3.3 23 33-60 201-223 (260)
81 2i04_A Membrane-associated gua 23.9 34 0.0012 19.1 1.4 10 44-53 43-52 (85)
82 2lb5_A Sensor histidine kinase 23.7 62 0.0021 20.6 2.8 39 45-88 119-167 (208)
83 1x5q_A LAP4 protein; PDZ domai 23.6 34 0.0012 20.2 1.4 10 44-53 63-72 (110)
84 2v90_A PDZ domain-containing p 23.3 32 0.0011 19.8 1.3 10 44-53 47-56 (96)
85 3id1_A Regulator of sigma E pr 23.3 35 0.0012 20.0 1.4 10 44-53 19-28 (95)
86 1n7t_A 99-MER peptide of densi 23.2 36 0.0012 19.9 1.5 10 44-53 59-68 (103)
87 4e34_A Golgi-associated PDZ an 23.1 33 0.0011 19.3 1.3 10 44-53 46-55 (87)
88 2ego_A General receptor for ph 23.1 36 0.0012 19.7 1.4 10 44-53 54-63 (96)
89 1g9o_A NHE-RF; PDZ domain, com 23.0 36 0.0012 19.3 1.4 10 44-53 44-53 (91)
90 3cwf_A Alkaline phosphatase sy 23.0 1.2E+02 0.0043 17.8 5.8 57 4-78 48-104 (122)
91 3cyy_A Tight junction protein 22.9 37 0.0013 19.2 1.4 10 44-53 40-50 (92)
92 1o9y_A HRCQ2; secretory protei 22.8 24 0.00082 20.9 0.6 28 25-57 21-48 (84)
93 3r68_A Na(+)/H(+) exchange reg 22.8 34 0.0012 19.5 1.3 10 44-53 46-55 (95)
94 2pzd_A Serine protease HTRA2; 22.6 36 0.0012 20.2 1.4 10 44-53 52-61 (113)
95 1yfb_A Transition state regula 22.6 1.1E+02 0.0037 17.0 4.5 17 35-53 28-44 (59)
96 1whd_A RGS3, regulator of G-pr 22.6 38 0.0013 19.8 1.5 10 44-53 53-62 (100)
97 2h2b_A Tight junction protein 22.3 36 0.0012 20.0 1.4 10 44-53 55-64 (107)
98 1xne_A Hypothetical protein PF 22.3 45 0.0015 21.2 1.8 12 44-55 34-45 (113)
99 2edv_A FERM and PDZ domain-con 22.2 30 0.001 20.2 1.0 11 43-53 46-56 (96)
100 1bs0_A Protein (8-amino-7-oxon 22.2 90 0.0031 21.7 3.6 27 31-60 109-135 (384)
101 2fe5_A Presynaptic protein SAP 22.1 39 0.0013 19.2 1.4 10 44-53 51-60 (94)
102 1kca_A Repressor protein CI; g 22.0 1.2E+02 0.0042 18.1 3.9 11 44-54 32-42 (109)
103 2qg1_A Multiple PDZ domain pro 21.9 39 0.0013 19.2 1.4 10 44-53 47-56 (92)
104 1wi2_A Riken cDNA 2700099C19; 21.9 39 0.0013 19.9 1.4 10 44-53 58-67 (104)
105 1ihj_A INAD; intermolecular di 21.9 39 0.0013 19.4 1.4 10 44-53 55-64 (98)
106 3by8_A Sensor protein DCUS; hi 21.8 91 0.0031 19.3 3.3 67 6-89 58-126 (142)
107 2d90_A PDZ domain containing p 21.8 39 0.0013 19.7 1.4 10 44-53 47-56 (102)
108 2vwr_A Ligand of NUMB protein 21.8 40 0.0014 19.3 1.4 10 44-53 47-56 (95)
109 1y7n_A Amyloid beta A4 precurs 21.7 41 0.0014 19.6 1.5 10 44-53 48-57 (90)
110 2jil_A GRIP1 protein, glutamat 21.6 40 0.0014 19.3 1.4 10 44-53 50-59 (97)
111 2fcf_A Multiple PDZ domain pro 21.5 40 0.0014 19.5 1.4 9 45-53 58-66 (103)
112 3sfj_A TAX1-binding protein 3; 21.5 40 0.0014 19.6 1.4 10 44-53 62-71 (104)
113 3o27_A Putative uncharacterize 21.2 55 0.0019 19.3 1.9 18 35-54 31-48 (68)
114 2edz_A PDZ domain-containing p 21.2 41 0.0014 20.1 1.4 10 44-53 55-64 (114)
115 3ngh_A PDZ domain-containing p 21.1 41 0.0014 19.7 1.4 10 44-53 43-52 (106)
116 2kl1_A YLBL protein; structure 21.0 40 0.0014 19.7 1.4 10 44-53 21-30 (94)
117 2p3w_A Probable serine proteas 21.0 41 0.0014 20.0 1.4 10 44-53 52-61 (112)
118 2iwo_A Multiple PDZ domain pro 20.9 44 0.0015 20.5 1.6 11 43-53 70-80 (120)
119 3khf_A Microtubule-associated 20.9 42 0.0014 19.3 1.4 10 44-53 51-60 (99)
120 3a2b_A Serine palmitoyltransfe 20.8 1.4E+02 0.0047 20.9 4.4 32 26-60 108-139 (398)
121 3v2d_N 50S ribosomal protein L 20.8 1.3E+02 0.0046 19.7 4.0 30 27-56 23-58 (140)
122 1n7e_A AMPA receptor interacti 20.6 43 0.0015 19.3 1.4 10 44-53 48-57 (97)
123 2opg_A Multiple PDZ domain pro 20.5 44 0.0015 19.2 1.4 10 44-53 48-57 (98)
124 1wh1_A KIAA1095 protein; PDZ d 20.5 42 0.0015 20.5 1.4 10 44-53 65-75 (124)
125 3r8s_J 50S ribosomal protein L 20.4 1.3E+02 0.0043 19.9 3.9 29 27-55 25-59 (142)
126 2qkv_A Inactivation-NO-after-p 20.3 42 0.0014 19.5 1.3 9 45-53 50-58 (96)
127 2iwn_A Multiple PDZ domain pro 20.2 45 0.0015 18.9 1.4 10 44-53 51-60 (97)
128 2eei_A PDZ domain-containing p 20.2 41 0.0014 19.7 1.3 10 44-53 49-58 (106)
129 1uez_A KIAA1526 protein; PDZ d 20.1 34 0.0012 19.9 0.9 10 44-53 52-61 (101)
No 1
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=71.47 E-value=15 Score=23.99 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=40.4
Q ss_pred eeEEeCCCCCeeeecCC--CceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCCC-CCCCCCeEEEEeeee-CCCCCCC
Q psy2555 6 SKESFGPDGGLVSNAPH--IPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKAG-GSHLPDLTVITPVFI-DSQPVEE 81 (90)
Q Consensus 6 ~~~i~d~~G~~va~~~g--~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~G-gtHl~D~~~~~PVF~-~Gel~~~ 81 (90)
...+.|++|+.++.+.. ...-+..-. -.+.. ++.|..++ -+||.+ .+--+=+++.+||+. +|++
T Consensus 72 ~i~i~d~~G~~~~~~~~~~~~~~~~~r~-~f~~a-------~~~~~~~i-s~~~~~~~~g~~~i~ia~pi~~~~g~~--- 139 (217)
T 4dah_A 72 GLYFLNAKGDVTASTTELKTKVNLADRS-FFIKA-------KETKKTVI-SDSYSSRITGQPIFTICVPVLDSKRNV--- 139 (217)
T ss_dssp EEEEEETTCBEEEESSCCSSCCBCTTSH-HHHHH-------HHHCSCEE-CCCEECTTTCSEEEEEEEEEECTTSCE---
T ss_pred EEEEECCCCcEEEecCCCCCCCCcchhH-HHHHH-------HhcCCcEE-eceEEcCCCCCEEEEEEEEEECCCCCE---
Confidence 57789999999886431 111111111 12222 22355555 468864 233456789999998 8876
Q ss_pred ccEEEEE
Q psy2555 82 GPVFFVA 88 (90)
Q Consensus 82 ~lv~~~a 88 (90)
+|.++
T Consensus 140 --~Gvl~ 144 (217)
T 4dah_A 140 --TDYLV 144 (217)
T ss_dssp --EEEEE
T ss_pred --EEEEE
Confidence 77654
No 2
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=62.45 E-value=3.7 Score=19.24 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=12.5
Q ss_pred eeeEEeCCCCCeeee
Q psy2555 5 VSKESFGPDGGLVSN 19 (90)
Q Consensus 5 ~~~~i~d~~G~~va~ 19 (90)
.++-|||.+|++++.
T Consensus 5 ~ss~IYD~~g~~i~~ 19 (26)
T 2v2f_A 5 TSSKIYDNKNQLIAD 19 (26)
T ss_pred CCCEEEeCCCCEeee
Confidence 357899999999875
No 3
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=60.83 E-value=8.4 Score=26.88 Aligned_cols=53 Identities=11% Similarity=0.281 Sum_probs=33.1
Q ss_pred CCCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCC-CCCCCCCeE
Q psy2555 12 PDGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKA-GGSHLPDLT 67 (90)
Q Consensus 12 ~~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~-GgtHl~D~~ 67 (90)
.+|+++.++. .--.+++....+.++-+.. .|+|||++++--|-. |-....|..
T Consensus 154 vNGe~~q~g~-t~~mi~~~~~lia~lS~~~--tL~pGDvI~TGTp~Gvg~l~~GD~v 207 (221)
T 3s52_A 154 INGEIRQQGN-TRDMITPIIPLISYMSRFF--TLRAGDIVLTGTPQGVGPMQSGDML 207 (221)
T ss_dssp ETTEEEEEEE-GGGBSSCHHHHHHHHHHHS--CBCTTCEEECCCCSCCEEECTTCEE
T ss_pred ECCEEEEEEc-HHHccCCHHHHHHHHhCCC--CcCCCCEEEeCCCCcceecCCCCEE
Confidence 3677665443 3334556677777765544 799999999988743 224555543
No 4
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=58.80 E-value=9.2 Score=26.81 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=34.0
Q ss_pred CCCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCC-CCCCCCCeEE
Q psy2555 12 PDGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKA-GGSHLPDLTV 68 (90)
Q Consensus 12 ~~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~-GgtHl~D~~~ 68 (90)
.+|+++.++. .--.+++....+.++-+.. .|+||||+++--|-. |-.+..|...
T Consensus 152 vNGe~~q~g~-t~~mi~~~~~lia~lS~~~--tL~pGDvI~TGTp~Gvg~l~~GD~v~ 206 (224)
T 3l53_A 152 KNGQFQQQGS-SAEMLFPILPLIAHMSEHF--SLQPGDVILTGTPAGVGPLEVGDSLS 206 (224)
T ss_dssp ETTEEEEEEE-GGGCSSCHHHHHHHHHHHS--CBCTTCEEECCCCSCCEECCTTCEEE
T ss_pred ECCEEEEEEc-HHHhcCCHHHHHHHHHCCC--CcCCCCEEEcCCCCCCEEcCCCCEEE
Confidence 4677765543 2233456666776665543 799999999998843 2245566544
No 5
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=58.23 E-value=7 Score=27.25 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=26.4
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCC
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPK 57 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy 57 (90)
+|+++.++. .--.+++....+.++.+. -.|+|||++++-=|=
T Consensus 154 NGe~~q~g~-~~~mi~~~~~lia~ls~~--~tL~~GDvI~TGTp~ 195 (225)
T 1saw_A 154 NGELRQEGE-TSSMIFSIPYIISYVSKI--ITLEEGDIILTGTPK 195 (225)
T ss_dssp TTEEEEEEE-GGGBSSCHHHHHHHHHTT--SCBCTTCEEECCCCS
T ss_pred CCEEEEEEc-HHHcCCCHHHHHHHHhCC--CCcCCCCEEEcCCCC
Confidence 566554433 222345566666665543 479999999998774
No 6
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1
Probab=58.02 E-value=2.6 Score=30.43 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCC
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKA 58 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~ 58 (90)
+|+++.++. .-.........+.++- +. ..|+|||++++--|-.
T Consensus 177 NGe~~q~g~-t~~m~~~~~~Lia~lS-~~-~tL~pGDvI~TGTp~G 219 (259)
T 1nkq_A 177 NGQLRQDGG-TNLMLHPLHKILQHIS-TM-ISLEPGDIILTGTPAG 219 (259)
T ss_dssp TTEEEEEEE-GGGBSSCHHHHHHHHH-TT-SCBCTTCEEECCCCSC
T ss_pred CCEEEEEEc-HHHcCCCHHHHHHHHh-CC-CCcCCCCEEEeCCCCC
Confidence 677665443 1111233444444433 22 4799999999988753
No 7
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=57.18 E-value=6.3 Score=28.62 Aligned_cols=41 Identities=10% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCCeeeecC-CCceeecchHHHHHHHHHhcCCCCCCCcEEEecC
Q psy2555 13 DGGLVSNAP-HIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNH 55 (90)
Q Consensus 13 ~G~~va~~~-g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~ND 55 (90)
+|+...++. ..--.+++....+.++-+. -.|+||||+++-=
T Consensus 215 NGe~~q~g~~~t~~mi~~~~~li~~ls~~--~tL~pGDvI~TGT 256 (293)
T 2q18_X 215 EGRVFFEGSVNTNKMRRKIEEQIQYLIRD--NPIPDGTILTTGT 256 (293)
T ss_dssp TTEEEEEEEEEGGGBCSCHHHHHHHHHTT--CCCCTTEEEECCC
T ss_pred CCEEEEECCCCHHHhccCHHHHHHHHHcC--CCCCCCCEEECCC
Confidence 565554321 1222344555555555442 4799999999877
No 8
>1ne8_A Conserved hypothetical protein YDCE; structural genomics, NEW YORK SGX research center for structural genomics, PSI; HET: 1PG; 2.10A {Bacillus subtilis} SCOP: b.34.6.2
Probab=56.05 E-value=6.2 Score=24.21 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=13.4
Q ss_pred CCCCCcEEEec-CCCCC
Q psy2555 44 NFKKGSVILSN-HPKAG 59 (90)
Q Consensus 44 ~l~~GDv~i~N-DPy~G 59 (90)
.++.|||++.| +|+.|
T Consensus 3 ~~~rGdI~~v~~~p~~g 19 (117)
T 1ne8_A 3 IVKRGDVYFADLSPVVG 19 (117)
T ss_dssp CCCTTEEEEEECCSCCT
T ss_pred cceeceEEEEECCCCCC
Confidence 47899999999 58876
No 9
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=54.80 E-value=7.9 Score=27.62 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhc---CCCCCCCcEEEecCC
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHR---KGNFKKGSVILSNHP 56 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~---~~~l~~GDv~i~NDP 56 (90)
+|+++.++.+ --.++....++.++.+++ +..|+||||+++=-|
T Consensus 195 NGe~~q~g~t-~~ml~~p~~~i~~ls~~l~~~g~tL~~GDvI~TGT~ 240 (267)
T 2eb4_A 195 NGVIEETGVA-AGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSF 240 (267)
T ss_dssp TTEEEEEEEG-GGTTTSTTHHHHHHHHHHGGGTCCBCTTCEEECCCS
T ss_pred CCEEEEEecH-HhcccCHHHHHHHHHHHHHHcCCCCCCCCEEECCCC
Confidence 5666554332 122445556777776655 358999999999876
No 10
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=54.04 E-value=8 Score=29.29 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=25.5
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCC
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPK 57 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy 57 (90)
+|+++.++...--.+.+....+.++-+. .+|+||||+++==|-
T Consensus 245 NGe~~q~~~~t~~Mif~~~~lIa~lS~~--~tL~pGDvI~TGTps 287 (359)
T 3lzk_A 245 NGEPFGRANAGIDMTFDFPQLIVHAART--RPLSAGTIIGSGTVS 287 (359)
T ss_dssp TTEEEECCBTTSSCSSCHHHHHHHHTTT--SCBCTTEEEECCSCC
T ss_pred CCEEEEcCcCcccccCCHHHHHHHHhCC--CCcCCCCEEEcCCcC
Confidence 5666544331333344555555444332 389999999998775
No 11
>1m1f_A KID toxin protein; toxin-antitoxin, plasmid maintenance, post segregational killing, DNA replication, mutational analysis, CCDB; 1.40A {Escherichia coli} SCOP: b.34.6.2 PDB: 2c06_A
Probab=52.51 E-value=7.7 Score=23.60 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=12.2
Q ss_pred CCCCcEEEec-CCCCC
Q psy2555 45 FKKGSVILSN-HPKAG 59 (90)
Q Consensus 45 l~~GDv~i~N-DPy~G 59 (90)
++.|||++.| ||..|
T Consensus 1 ~~rGdI~~v~~~p~~g 16 (110)
T 1m1f_A 1 MERGEIWLVSLDPTAG 16 (110)
T ss_dssp CCTTEEEEEECCSCCT
T ss_pred CcccEEEEEECCCCCC
Confidence 4789999999 58765
No 12
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=52.25 E-value=11 Score=27.18 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCCCC-CCCCCe
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKAGG-SHLPDL 66 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~Gg-tHl~D~ 66 (90)
+|++..++. .--.+++....+.++-+.. +|+||||+++=-|-.-+ ....|.
T Consensus 194 NGe~~q~g~-t~~mi~~~~~lIa~lS~~~--tL~pGDvI~TGTp~Gvg~l~~GD~ 245 (265)
T 3rr6_A 194 NGQVRQRSR-TSLLLHDVGAIVEWVSAVM--TLLPGDVILTGTPEGVGPIVDGDT 245 (265)
T ss_dssp TTEEEEEEE-GGGBSSCHHHHHHHHHHHS--CBCTTCEEECCCCSCCEECCTTCE
T ss_pred CCEEEEEEC-HHhhcCCHHHHHHHHhcCC--CcCCCCEEEeCCCCCceeCCCCCE
Confidence 566654432 3333556666666665433 79999999998885322 455554
No 13
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=49.27 E-value=14 Score=26.56 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=29.9
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCC-CCCCCCCeE
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKA-GGSHLPDLT 67 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~-GgtHl~D~~ 67 (90)
+|++..++. .--.+++....+.++.+. -+|+|||++++--|=. |.....|..
T Consensus 190 NGe~~q~g~-t~~mi~~~~~lia~ls~~--~tL~pGDvI~TGTp~Gvg~l~~GD~v 242 (264)
T 2dfu_A 190 NGTLRQEGH-TSQMIFSVAEILSYISTF--MTLEPLDVVLTGTPEGVGALRPGDRL 242 (264)
T ss_dssp TTEEEEEEE-GGGBSSCHHHHHHHHHTT--SCBCTTCEEECCCCSCCCBCCTTCEE
T ss_pred CCEEEEEec-HHHhhcCHHHHHHHHhcC--CCcCCCCEEEeCCCCCccccCCCCEE
Confidence 565554332 222344555555555432 4799999999988753 224555544
No 14
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=47.50 E-value=13 Score=26.17 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=29.6
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCCCC-CCCCCe
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKAGG-SHLPDL 66 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~Gg-tHl~D~ 66 (90)
+|++..++. .--.+++....+.++.+. -.|+|||++++--|=.-+ ....|.
T Consensus 176 NGe~~q~g~-t~~mi~~~~~lia~ls~~--~tL~pGDvI~TGTp~gvg~l~~GD~ 227 (246)
T 1wzo_A 176 NGELRQEGH-TSRMLYSVAELLEFISEF--MTLEPYDVLLTGTPKGISQVRPGDV 227 (246)
T ss_dssp TTEEEEEEE-GGGBSSCHHHHHHHHHTT--SCBCTTCEEECCCCCCSCEECTTCE
T ss_pred CCEEEEeeC-HHHhCCCHHHHHHHHhCC--CCcCCCCEEEeCCCCCceECCCCCE
Confidence 565554433 222245556666666543 379999999998875322 344454
No 15
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=46.75 E-value=15 Score=27.56 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=26.8
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCC
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPK 57 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy 57 (90)
+|+++.++. .--.+++....+.++-+. -.|+||||+++=-|-
T Consensus 245 NGe~~q~g~-t~dMif~~~~lIa~lS~~--~tL~pGDvI~TGTp~ 286 (329)
T 3r6o_A 245 NGELRQSGS-TVDMTLGFAEVVETVSAT--IALRAGDIILTGTPG 286 (329)
T ss_dssp TTEEEEEEE-GGGCSSCHHHHHHHHHTT--SCBCTTCEEECCCCS
T ss_pred CCEEEEecC-HHHhcCCHHHHHHHHHcC--CCcCCCCEEEcCCcc
Confidence 566655443 233345556666665433 379999999999885
No 16
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=46.54 E-value=11 Score=25.16 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=12.8
Q ss_pred CCCCCCcEEEecCCC
Q psy2555 43 GNFKKGSVILSNHPK 57 (90)
Q Consensus 43 ~~l~~GDv~i~NDPy 57 (90)
.++++||+++.+...
T Consensus 3 ~~l~~GDlvf~~~~~ 17 (186)
T 2if6_A 3 WQPQTGDIIFQISRS 17 (186)
T ss_dssp CCCCTTCEEEECCCS
T ss_pred ccCCCCCEEEEEcCC
Confidence 479999999999864
No 17
>1ub4_A MAZF protein; toxin, antidote, programmed cell death, post-segregation, AD module, structural genomics, PSI; 1.70A {Escherichia coli} SCOP: b.34.6.2 PDB: 3nfc_A
Probab=46.12 E-value=8.7 Score=23.50 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=11.3
Q ss_pred CCCCCcEEEec-CCCCC
Q psy2555 44 NFKKGSVILSN-HPKAG 59 (90)
Q Consensus 44 ~l~~GDv~i~N-DPy~G 59 (90)
.++.|||++.| ||..|
T Consensus 5 ~~~rGdI~~v~~~p~~g 21 (110)
T 1ub4_A 5 VPDMGDLIWVDFDPTKG 21 (110)
T ss_dssp CCCTTEEEEEECCC---
T ss_pred ccccCeEEEEECCCCCC
Confidence 47899999999 57765
No 18
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=45.47 E-value=21 Score=25.46 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=28.3
Q ss_pred CCCCeeeecCCCceeecchHHHHHHHHHh---cCCCCCCCcEEEecCC
Q psy2555 12 PDGGLVSNAPHIPVHLGSMQEAVKFQIDH---RKGNFKKGSVILSNHP 56 (90)
Q Consensus 12 ~~G~~va~~~g~p~~~g~~~~~v~~~~~~---~~~~l~~GDv~i~NDP 56 (90)
.+|+++.++.+ --.++....++.++.++ .+..|+|||++++=-|
T Consensus 188 vNGe~~q~g~~-~~ml~~p~~~v~~ls~~l~~~g~tL~~GdvI~TGT~ 234 (270)
T 2wqt_A 188 RNNEEVSSGRG-SECLGHPLNAAVWLARKMASLGEPLRTGDIILTGAL 234 (270)
T ss_dssp ETTEEEEEEEG-GGTTTSHHHHHHHHHHHHHHTTCCBCTTCEEEEEES
T ss_pred ECCEEEEEEch-hhccCCHHHHHHHHHHHHHhcCCCcCCCCEEEcCCC
Confidence 36666655432 22355566677776664 2358999999999876
No 19
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=45.46 E-value=14 Score=23.06 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=14.9
Q ss_pred CCCCCcEEEecCCCCC
Q psy2555 44 NFKKGSVILSNHPKAG 59 (90)
Q Consensus 44 ~l~~GDv~i~NDPy~G 59 (90)
.++.||.++.+.||.|
T Consensus 58 ~VkvGD~Vlf~k~y~G 73 (97)
T 1pcq_O 58 DVKVGDIVIFNDGYGV 73 (97)
T ss_dssp SCCTTCEEEECCCSSC
T ss_pred ccCCCCEEEECCccCC
Confidence 5899999999999997
No 20
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*
Probab=44.54 E-value=9.5 Score=23.29 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=9.0
Q ss_pred cEEEecCCCCC
Q psy2555 49 SVILSNHPKAG 59 (90)
Q Consensus 49 Dv~i~NDPy~G 59 (90)
-|++.||+|..
T Consensus 8 ~Vil~NDd~~t 18 (85)
T 3dnj_A 8 RVLILNDDYTP 18 (85)
T ss_dssp EEEEECCSSSB
T ss_pred EEEEECCCCCC
Confidence 38999999974
No 21
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=42.71 E-value=25 Score=25.95 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=17.6
Q ss_pred CCCCCCcEEEecCCCCCCCCCCCeEE
Q psy2555 43 GNFKKGSVILSNHPKAGGSHLPDLTV 68 (90)
Q Consensus 43 ~~l~~GDv~i~NDPy~GgtHl~D~~~ 68 (90)
.+++|||+++.+..+..+.+..-+.+
T Consensus 251 ~~lqpGDLvff~~~~~~g~~~~HVGI 276 (313)
T 4fdy_A 251 EEAQAGDLIFFHSTYNAGTYVTHVAI 276 (313)
T ss_dssp TTCCTTCEEEESSSSCCSSSCCEEEE
T ss_pred hhCCCCCEEEEecCCCCCCCCcEEEE
Confidence 57999999999876655433333333
No 22
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A
Probab=42.61 E-value=11 Score=22.82 Aligned_cols=10 Identities=40% Similarity=0.361 Sum_probs=8.5
Q ss_pred EEEecCCCCC
Q psy2555 50 VILSNHPKAG 59 (90)
Q Consensus 50 v~i~NDPy~G 59 (90)
|++.||+|..
T Consensus 5 Vil~NDd~~t 14 (81)
T 3o1f_A 5 VILVNDDYTP 14 (81)
T ss_dssp EEEECCSSSC
T ss_pred EEEECCCCCC
Confidence 7899999974
No 23
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Probab=41.08 E-value=11 Score=23.88 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=9.3
Q ss_pred cEEEecCCCCC
Q psy2555 49 SVILSNHPKAG 59 (90)
Q Consensus 49 Dv~i~NDPy~G 59 (90)
-|++.||+|..
T Consensus 29 ~ViL~NDd~tt 39 (108)
T 2w9r_A 29 KVILVNDDYTP 39 (108)
T ss_dssp EEEEECCSSSB
T ss_pred EEEEEcCCCCC
Confidence 58999999973
No 24
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=38.65 E-value=16 Score=25.29 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=11.8
Q ss_pred CCCCCCcEEEecCC
Q psy2555 43 GNFKKGSVILSNHP 56 (90)
Q Consensus 43 ~~l~~GDv~i~NDP 56 (90)
+.+++||+++.+-.
T Consensus 38 ~~l~~GDlif~~~~ 51 (214)
T 3kw0_A 38 NVLKTGDIFLCSGN 51 (214)
T ss_dssp TTCCTTCEEEEEEC
T ss_pred hhCCCCCEEEEeCC
Confidence 58999999998753
No 25
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=36.07 E-value=17 Score=26.64 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=14.3
Q ss_pred CCCCCCcEEEecCCCCCC
Q psy2555 43 GNFKKGSVILSNHPKAGG 60 (90)
Q Consensus 43 ~~l~~GDv~i~NDPy~Gg 60 (90)
.+++|||+++.+..|.++
T Consensus 247 ~~l~pGDLvff~~~~~~~ 264 (308)
T 4hpe_A 247 SQAKAGDLVFFHSTYNAG 264 (308)
T ss_dssp GGCCTTCEEEEECSSSCS
T ss_pred hhCCCCCEEEEcCCCCCC
Confidence 479999999998766544
No 26
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=36.06 E-value=16 Score=21.07 Aligned_cols=10 Identities=10% Similarity=0.507 Sum_probs=8.9
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 36 Gl~~GD~I~~ 45 (87)
T 2i6v_A 36 GLQDGDMAVA 45 (87)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 27
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=35.79 E-value=24 Score=23.03 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=40.3
Q ss_pred eeeEEeCCCCCeeeec--CCCceeecchHHHHHH--HHHhcC-CCCCCCcEEEecCCCCCCCCCC--CeEEE---Eeeee
Q psy2555 5 VSKESFGPDGGLVSNA--PHIPVHLGSMQEAVKF--QIDHRK-GNFKKGSVILSNHPKAGGSHLP--DLTVI---TPVFI 74 (90)
Q Consensus 5 ~~~~i~d~~G~~va~~--~g~p~~~g~~~~~v~~--~~~~~~-~~l~~GDv~i~NDPy~GgtHl~--D~~~~---~PVF~ 74 (90)
.+.+|.|+.|.+++.. .|.+ +.+...+.+. ....|. .+..=++.+--+.+..+-.+++ ++..+ .||+.
T Consensus 35 v~IaVvD~~G~ll~~~rmdga~--~~s~~ia~~KA~Ta~~~~~~T~~~~~~~~~g~~~~~l~~~~~g~~~~~gGG~PI~~ 112 (145)
T 2a2l_A 35 VVFSVVDRGGNTLLIQRMDEAF--VSSCDISLNKAWSACSLKQGTHEITSAVQPGQSLYGLQLTNQQRIIIFGGGLPVIF 112 (145)
T ss_dssp CEEEEEETTSCEEEEEECTTSC--TTHHHHHHHHHHHHHHTTSCGGGSGGGSSTTSTTTTGGGSGGGTCCCSSCEEEEES
T ss_pred EEEEEEECCCCEEEEEECCCCC--cchHHHHHHHHHHHHHcCCCHHHHHHHhcCCccchhhccCCCCCEEEECCEEEEEe
Confidence 5789999999998853 3444 3344444422 333343 2222222221112223333444 55554 79999
Q ss_pred CCCCCCCccEEEE
Q psy2555 75 DSQPVEEGPVFFV 87 (90)
Q Consensus 75 ~Gel~~~~lv~~~ 87 (90)
+|++ ||=+
T Consensus 113 ~G~v-----IGaI 120 (145)
T 2a2l_A 113 NEQV-----IGAV 120 (145)
T ss_dssp SSSE-----EEEE
T ss_pred CCEE-----EEEE
Confidence 9976 7754
No 28
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=34.82 E-value=11 Score=24.46 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=11.4
Q ss_pred CCCCCCcEEEecCC
Q psy2555 43 GNFKKGSVILSNHP 56 (90)
Q Consensus 43 ~~l~~GDv~i~NDP 56 (90)
.+++|||+++.+.+
T Consensus 88 ~~~~pGDlvff~~~ 101 (142)
T 3gt2_A 88 QQARKGDLIFYGPE 101 (142)
T ss_dssp GGCCTTCEEEESGG
T ss_pred hhCCCCCEEEeCCC
Confidence 47999999998653
No 29
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=34.53 E-value=27 Score=25.52 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=26.1
Q ss_pred eeecchHHHHHHHHHhcCCCCCCCcEEEecCCCC-CCCCCCCeEE
Q psy2555 25 VHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKA-GGSHLPDLTV 68 (90)
Q Consensus 25 ~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~-GgtHl~D~~~ 68 (90)
-.+.+....+.++-+ + -+|+||||+++=-|-. |-....|...
T Consensus 230 ~mi~~~~~lIa~lS~-~-~tL~pGDvI~TGTP~Gvg~l~~GD~v~ 272 (288)
T 4dbf_A 230 QMIMKMGEIIEFITA-S-MTLLPGDVIATGSPAGTEAMVDGDYIE 272 (288)
T ss_dssp GBSSCHHHHHHHHHT-T-SCBCTTCEEECCCCSCCCBCCTTCEEE
T ss_pred HhcCCHHHHHHHHhC-C-CCcCCCCEEEcCCCCCCeecCCCCEEE
Confidence 334555556655533 2 4799999999998853 2245555543
No 30
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=34.01 E-value=31 Score=26.27 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=25.8
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCC
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPK 57 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy 57 (90)
+|++..++. .--.+++....+.++-+. -.|+|||++++-=|-
T Consensus 137 NGe~~q~g~-t~~mi~~~~~li~~ls~~--~tL~~GDvI~TGTp~ 178 (429)
T 1gtt_A 137 NGRPADHWN-TADLQRNAAQLLSALSEF--ATLNPGDAILLGTPQ 178 (429)
T ss_dssp TTEEEEEEE-GGGBSSCHHHHHHHHHTT--SCBCTTCEEECCCCS
T ss_pred CCEEEEeCC-HHHhcCCHHHHHHHHhcC--CCcCCCCEEEEeccC
Confidence 566554432 233345555566665332 379999999987764
No 31
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=33.43 E-value=17 Score=27.67 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=13.1
Q ss_pred CCCCCCcEEEecCCC
Q psy2555 43 GNFKKGSVILSNHPK 57 (90)
Q Consensus 43 ~~l~~GDv~i~NDPy 57 (90)
+=++|||+++.||-.
T Consensus 52 ~~L~~GDlLV~NdTr 66 (346)
T 1yy3_A 52 SFFNEGDCLVLNNTR 66 (346)
T ss_dssp GGCCTTEEEEECCCC
T ss_pred hhcCCCCEEEecCce
Confidence 458999999999976
No 32
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=33.15 E-value=32 Score=26.15 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=31.1
Q ss_pred CCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCC-CCCCCCCeEE
Q psy2555 13 DGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKA-GGSHLPDLTV 68 (90)
Q Consensus 13 ~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~-GgtHl~D~~~ 68 (90)
+|++..++. .--.+++....+.++.+. -.|+|||++++-=|=. |-....|...
T Consensus 356 NGe~~q~g~-~~~mi~~~~~lia~ls~~--~tL~~GDvI~TGTp~gvg~l~~GD~v~ 409 (429)
T 1gtt_A 356 NGELRQQGT-TADLIFSVPFLIAYLSEF--MTLNPGDMIATGTPKGLSDVVPGDEVV 409 (429)
T ss_dssp TTEEEEEEE-GGGBSSCHHHHHHHHHTT--SCBCTTCEEECCCCSCCCBCCTTCEEE
T ss_pred CCEEEEEeC-HHHcCCCHHHHHHHHhCC--CCcCCCCEEEcCCCCCCeECCCCCEEE
Confidence 566554433 222345566666665543 3799999999988743 2245555443
No 33
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=32.74 E-value=34 Score=22.10 Aligned_cols=74 Identities=18% Similarity=0.363 Sum_probs=42.4
Q ss_pred EEeCCC--CCeeeec--CCCceeecc-hHH-HHHHHHHhcCCCCCCCcEEEecCCCCCCC---CC-------CCeEEEEe
Q psy2555 8 ESFGPD--GGLVSNA--PHIPVHLGS-MQE-AVKFQIDHRKGNFKKGSVILSNHPKAGGS---HL-------PDLTVITP 71 (90)
Q Consensus 8 ~i~d~~--G~~va~~--~g~p~~~g~-~~~-~v~~~~~~~~~~l~~GDv~i~NDPy~Ggt---Hl-------~D~~~~~P 71 (90)
..|+++ |++++++ ++.|..+|. .+. ... +.+...++.|-+++.+|-+..+. |. -=-.+..|
T Consensus 35 y~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~---~~~~~~~~~g~~~~I~Dv~~~~~~~~~~~~l~~~~v~S~L~vP 111 (171)
T 4glq_A 35 YAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFR---EHWVEAYRQGRIQATTDIFKAGLTECHLNQLRPLKVRANLVVP 111 (171)
T ss_dssp EEECTTCCEEEEEEEECTTSCCCTTCEECCTHHH---HHTHHHHHTTCCEEESCGGGTTCCHHHHHHHGGGTEEEEEEEE
T ss_pred EEEeCCCCeEEEEEEcCCCCccccCCccCccccH---HHHHHHHHcCCEEEEcCcCcCCCCHHHHHHHHhcCCcEEEEEE
Confidence 446666 4677654 566666653 111 111 11112356788899999876321 11 01368899
Q ss_pred eeeCCCCCCCccEEEEEe
Q psy2555 72 VFIDSQPVEEGPVFFVAN 89 (90)
Q Consensus 72 VF~~Gel~~~~lv~~~a~ 89 (90)
|+++|++ .|+.++
T Consensus 112 i~~~~~l-----~GlL~~ 124 (171)
T 4glq_A 112 MVIDDQL-----FGLLIA 124 (171)
T ss_dssp EEETTEE-----EEEEEE
T ss_pred EEECCEE-----EEEEEE
Confidence 9999987 887653
No 34
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=32.45 E-value=35 Score=26.29 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=25.9
Q ss_pred CCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCC
Q psy2555 14 GGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPK 57 (90)
Q Consensus 14 G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy 57 (90)
|+++..+. .--.+.++...+.++..+. -+|+|||++.+==|=
T Consensus 313 Ge~~q~~~-~~~m~~~~~~lIa~lss~g-~tL~pGDlI~TGTps 354 (421)
T 1hyo_A 313 AATICRSN-FKHMYWTMLQQLTHHSVNG-CNLRPGDLLASGTIS 354 (421)
T ss_dssp CEEEEEEE-TTCCSSCHHHHHHHHHTTS-CCCCTTCEEECCCCC
T ss_pred CEEEEecC-HHhhcCCHHHHHHHHHHCC-CccCCCCEEEcCCCC
Confidence 66665443 2333555565665553222 479999999997765
No 35
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=32.08 E-value=20 Score=21.45 Aligned_cols=10 Identities=10% Similarity=0.507 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 54 Gl~~GDvI~~ 63 (105)
T 2i4s_A 54 GLQDGDMAVA 63 (105)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999984
No 36
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.94 E-value=13 Score=22.36 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=9.4
Q ss_pred EeeeeCCCCCCCccEEEEE
Q psy2555 70 TPVFIDSQPVEEGPVFFVA 88 (90)
Q Consensus 70 ~PVF~~Gel~~~~lv~~~a 88 (90)
.||||||. -+|..
T Consensus 37 ~PvFHdg~------K~WsC 49 (75)
T 2yrt_A 37 VPVFHDAL------KGWSC 49 (75)
T ss_dssp CEEEETTE------EEESS
T ss_pred CcccCCCC------eeeCC
Confidence 49999983 56654
No 37
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu genomics, protein structure initiative, center for eukaryot structural genomics; 1.90A {Arabidopsis thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Probab=31.43 E-value=48 Score=23.87 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.2
Q ss_pred HHhcCCCCCCCcEEEecCCCCCCC
Q psy2555 38 IDHRKGNFKKGSVILSNHPKAGGS 61 (90)
Q Consensus 38 ~~~~~~~l~~GDv~i~NDPy~Ggt 61 (90)
++.| ..+|+||+|.--|-+|.|
T Consensus 58 ~~~f--~~r~~Dv~i~syPKsGTT 79 (326)
T 1q44_A 58 QKRF--EAKDSDIILVTNPKSGTT 79 (326)
T ss_dssp HHHC--CCCTTCEEEECCTTSCCH
T ss_pred HhcC--CcCCCCEEEEeCCCCcHH
Confidence 4445 599999999999999864
No 38
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=31.14 E-value=16 Score=27.79 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=12.8
Q ss_pred CCCCCCcEEEecCCC
Q psy2555 43 GNFKKGSVILSNHPK 57 (90)
Q Consensus 43 ~~l~~GDv~i~NDPy 57 (90)
+=++|||+++.||-.
T Consensus 60 ~~L~~GDlLV~NdTr 74 (347)
T 1vky_A 60 EYLEPGDLLVLNVSK 74 (347)
T ss_dssp GGCCTTCEEEEEEEE
T ss_pred hhcCCCCEEEecCce
Confidence 458999999999954
No 39
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=30.89 E-value=19 Score=23.08 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=11.0
Q ss_pred CCCCCCcEEEecC
Q psy2555 43 GNFKKGSVILSNH 55 (90)
Q Consensus 43 ~~l~~GDv~i~ND 55 (90)
.+++|||+++.+.
T Consensus 66 ~~l~pGDLvff~~ 78 (136)
T 2jyx_A 66 SNLRTGDLVLFRA 78 (136)
T ss_dssp TTCCTTEEEEEEC
T ss_pred HhCCCCCEEEECC
Confidence 4799999999765
No 40
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=30.65 E-value=22 Score=20.23 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=8.9
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 45 Gl~~GD~I~~ 54 (90)
T 2eaq_A 45 QLQVDDEIIA 54 (90)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 41
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.58 E-value=29 Score=21.42 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=11.0
Q ss_pred HhcCCCCCCCcEEEecC
Q psy2555 39 DHRKGNFKKGSVILSNH 55 (90)
Q Consensus 39 ~~~~~~l~~GDv~i~ND 55 (90)
++|.+.|++|+++....
T Consensus 63 ~~f~~~l~eG~vy~Is~ 79 (114)
T 1ynx_A 63 TKFNEILQEGKVYYVSK 79 (114)
T ss_dssp HHHHHHSCSSSEEEEES
T ss_pred HHHHhhcccCcEEEECC
Confidence 33334689999987544
No 42
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=30.57 E-value=17 Score=27.66 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=11.9
Q ss_pred CCCCCcEEEecCCC
Q psy2555 44 NFKKGSVILSNHPK 57 (90)
Q Consensus 44 ~l~~GDv~i~NDPy 57 (90)
=++|||+++.||-.
T Consensus 51 ~L~~GDlLV~NdTr 64 (345)
T 1wdi_A 51 FLRPGDVLVFNESK 64 (345)
T ss_dssp HCCTTCEEEEEEEE
T ss_pred hcCCCCEEEecCce
Confidence 48999999999953
No 43
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=30.49 E-value=21 Score=20.33 Aligned_cols=11 Identities=36% Similarity=0.404 Sum_probs=9.2
Q ss_pred CCCCCCcEEEe
Q psy2555 43 GNFKKGSVILS 53 (90)
Q Consensus 43 ~~l~~GDv~i~ 53 (90)
+.|++||+++.
T Consensus 47 ggl~~GD~I~~ 57 (90)
T 1qav_A 47 EALFVGDAILS 57 (90)
T ss_dssp TCCCTTEEEEE
T ss_pred CCCCCCCEEEE
Confidence 37999999975
No 44
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=30.11 E-value=23 Score=20.27 Aligned_cols=10 Identities=40% Similarity=0.507 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 44 Gl~~GD~I~~ 53 (91)
T 2pkt_A 44 NLCIGDVITA 53 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 45
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=29.22 E-value=18 Score=23.50 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=10.9
Q ss_pred CCCCCCcEEEecC
Q psy2555 43 GNFKKGSVILSNH 55 (90)
Q Consensus 43 ~~l~~GDv~i~ND 55 (90)
.+++|||+++.+.
T Consensus 66 ~~l~pGDLvFf~~ 78 (135)
T 2k1g_A 66 SNLRTGDLVLFRA 78 (135)
T ss_dssp GGCCTTEEEEEEE
T ss_pred HHccCCcEEEECC
Confidence 4799999998764
No 46
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=28.91 E-value=24 Score=19.93 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 43 GL~~GD~I~~ 52 (87)
T 2pa1_A 43 DLRPGDIIVA 52 (87)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 47
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.80 E-value=26 Score=20.58 Aligned_cols=11 Identities=9% Similarity=0.453 Sum_probs=9.2
Q ss_pred CCCCCCcEEEe
Q psy2555 43 GNFKKGSVILS 53 (90)
Q Consensus 43 ~~l~~GDv~i~ 53 (90)
+.|++||+++.
T Consensus 52 gGL~~GD~I~~ 62 (100)
T 2edp_A 52 QKMRTGDELVN 62 (100)
T ss_dssp TSCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 37999999974
No 48
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=28.19 E-value=26 Score=19.97 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 49 Gl~~GD~I~~ 58 (91)
T 1m5z_A 49 GLKPYDRLLQ 58 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 49
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=28.17 E-value=25 Score=20.27 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 47 GL~~GD~I~~ 56 (94)
T 1vb7_A 47 DLRPGDIIVA 56 (94)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 50
>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana}
Probab=27.88 E-value=21 Score=21.30 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=6.8
Q ss_pred EeeeeCCC
Q psy2555 70 TPVFIDSQ 77 (90)
Q Consensus 70 ~PVF~~Ge 77 (90)
.||||||.
T Consensus 37 ~PvFHdg~ 44 (74)
T 2xcm_E 37 PAVFHDRL 44 (74)
T ss_dssp CEEEETTE
T ss_pred CceeCCCC
Confidence 69999984
No 51
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=27.72 E-value=26 Score=19.82 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 42 Gl~~GD~I~~ 51 (88)
T 3bpu_A 42 GLKEGDLIVE 51 (88)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999975
No 52
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=27.57 E-value=26 Score=20.26 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 50 Gl~~GD~I~~ 59 (98)
T 2jxo_A 50 GLRAQDRIVE 59 (98)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999974
No 53
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=27.43 E-value=14 Score=20.59 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=1.9
Q ss_pred CCCCCcEEEecCCCC
Q psy2555 44 NFKKGSVILSNHPKA 58 (90)
Q Consensus 44 ~l~~GDv~i~NDPy~ 58 (90)
++++||+++.-.|..
T Consensus 3 ~~~~G~~il~~~~~~ 17 (64)
T 2odd_A 3 LYFQGENLYFQGDSS 17 (64)
T ss_dssp ------------CCS
T ss_pred cCCCCCEEeeCCCCC
Confidence 489999999988854
No 54
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=27.32 E-value=27 Score=19.82 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 44 Gl~~GD~I~~ 53 (89)
T 2q3g_A 44 GVAVGDWVLS 53 (89)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 55
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=27.19 E-value=27 Score=19.70 Aligned_cols=10 Identities=50% Similarity=0.810 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 44 Gl~~GD~I~~ 53 (88)
T 2uzc_A 44 NVRIGDVVLS 53 (88)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 56
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=26.84 E-value=28 Score=20.00 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 51 Gl~~GD~I~~ 60 (97)
T 2w4f_A 51 GVRVGDKLLE 60 (97)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999974
No 57
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=26.60 E-value=61 Score=19.74 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=36.7
Q ss_pred eeEEeCCCCCeeeecCCCceeecc-h--HHHHHHHHHhcCCCCCCCcEEEecCCCCCCCCCCCeEEEEeeee-CCCCCCC
Q psy2555 6 SKESFGPDGGLVSNAPHIPVHLGS-M--QEAVKFQIDHRKGNFKKGSVILSNHPKAGGSHLPDLTVITPVFI-DSQPVEE 81 (90)
Q Consensus 6 ~~~i~d~~G~~va~~~g~p~~~g~-~--~~~v~~~~~~~~~~l~~GDv~i~NDPy~GgtHl~D~~~~~PVF~-~Gel~~~ 81 (90)
...|.|++|..++.+. |..+|. + ....+.+++ |-.+..-. -++.-+-+....||+. +|++
T Consensus 52 ~i~v~d~~G~~~a~~~--~~~iG~~~~~~~~~~~al~--------G~~~~~~~---~g~~g~~~~~~~PV~~~~g~v--- 115 (131)
T 1p0z_A 52 YITVGDASGQRLYHVN--PDEIGKSMEGGDSDEALIN--------AKSYVSVR---KGSLGSSLRGKSPIQDATGKV--- 115 (131)
T ss_dssp EEEEEETTSBEEECSS--GGGTTSBCCSSCCHHHHHH--------CCCEEEEE---EETTEEEEEEEEEEECTTCCE---
T ss_pred EEEEEcCCCcEEEecC--hhhCCCcccCCCcHHHHhC--------CCeEEEEE---EccceeeEEEEEeEECCCCCE---
Confidence 4678999998887653 222331 1 111222222 11122110 2345577899999996 6877
Q ss_pred ccEEEEEe
Q psy2555 82 GPVFFVAN 89 (90)
Q Consensus 82 ~lv~~~a~ 89 (90)
+|.++.
T Consensus 116 --iGvv~v 121 (131)
T 1p0z_A 116 --IGIVSV 121 (131)
T ss_dssp --EEEEEE
T ss_pred --EEEEEE
Confidence 987653
No 58
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.43 E-value=29 Score=20.04 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=8.9
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 49 Gl~~GD~I~~ 58 (94)
T 2eeg_A 49 ALCPGDLIQA 58 (94)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 59
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=26.33 E-value=29 Score=20.34 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=9.2
Q ss_pred CCCCCCcEEEe
Q psy2555 43 GNFKKGSVILS 53 (90)
Q Consensus 43 ~~l~~GDv~i~ 53 (90)
..|++||+++.
T Consensus 46 aGL~~GD~I~~ 56 (96)
T 1ujv_A 46 PGLCEGDLIVE 56 (96)
T ss_dssp TTCCSSCEEEE
T ss_pred CCCCCCCEEEE
Confidence 57999999973
No 60
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=26.13 E-value=30 Score=19.37 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 40 Gl~~GD~I~~ 49 (83)
T 2kv8_A 40 GLRAGDQILA 49 (83)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 61
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=25.94 E-value=73 Score=18.16 Aligned_cols=21 Identities=0% Similarity=-0.083 Sum_probs=17.2
Q ss_pred CCceeeEEeCCCCCeeeecCC
Q psy2555 2 NNFVSKESFGPDGGLVSNAPH 22 (90)
Q Consensus 2 ~~d~~~~i~d~~G~~va~~~g 22 (90)
++-|-.-|..++|++|+++++
T Consensus 10 ~G~frfrLka~NGevI~sSe~ 30 (64)
T 3bid_A 10 KGEYRWRLKAANHEIIAQGEG 30 (64)
T ss_dssp TSCEEEEEECTTSCEEEECCC
T ss_pred CCCEEEEEEeCCCCEEEECCC
Confidence 456778899999999998774
No 62
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=25.93 E-value=30 Score=19.68 Aligned_cols=10 Identities=0% Similarity=0.268 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 45 Gl~~GD~I~~ 54 (90)
T 2he4_A 45 GLRAQDRLIE 54 (90)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 63
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=25.85 E-value=24 Score=22.76 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=18.9
Q ss_pred CCCCCCcEEEecCCCCCCCCCCCeEEE
Q psy2555 43 GNFKKGSVILSNHPKAGGSHLPDLTVI 69 (90)
Q Consensus 43 ~~l~~GDv~i~NDPy~GgtHl~D~~~~ 69 (90)
.+|++||-+++=|+ .|.....++..+
T Consensus 19 ~eL~~GD~Vla~d~-~G~~~~s~V~~~ 44 (145)
T 1at0_A 19 GELSIGDRVLSMTA-NGQAVYSEVILF 44 (145)
T ss_dssp GGCCTTCEEEEECT-TSCEEEEEEEEE
T ss_pred HHcCCCCEEEEECC-CCCEEEEEEEEE
Confidence 47899999999887 555555555544
No 64
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=25.78 E-value=77 Score=21.51 Aligned_cols=20 Identities=15% Similarity=-0.022 Sum_probs=13.7
Q ss_pred HHHHhcCCCCCCCcEEEecC
Q psy2555 36 FQIDHRKGNFKKGSVILSNH 55 (90)
Q Consensus 36 ~~~~~~~~~l~~GDv~i~ND 55 (90)
..+++|.+.|++|+++....
T Consensus 64 ~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 64 EQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp HHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHhhhhcccCCEEEECC
Confidence 33445555799999997654
No 65
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=25.76 E-value=30 Score=19.82 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 41 Gl~~GD~I~~ 50 (91)
T 2f5y_A 41 GLQQLDTVLQ 50 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 66
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=25.49 E-value=32 Score=24.57 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=32.3
Q ss_pred ceeeEEeCCCCC------eeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCCCC
Q psy2555 4 FVSKESFGPDGG------LVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKAGG 60 (90)
Q Consensus 4 d~~~~i~d~~G~------~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~Gg 60 (90)
+...||.+..|- ++|.+.|||.-+|.-... ..+++||.++. |.+.|-
T Consensus 174 ~~~~givt~~Gg~tSH~AIlAR~lgIPavvg~~~~~---------~~~~~G~~v~v-Dg~~G~ 226 (258)
T 1zym_A 174 KKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVT---------SQVKNDDYLIL-DAVNNQ 226 (258)
T ss_dssp GGEEEEECSCCCSSSHHHHHHHHHTCCEECCCSCHH---------HHCCTTCEEEE-CCSSCC
T ss_pred hhcEEEEEcCCCcccHHHHHHHHcCCCEEEechhHH---------HhCCCCCEEEE-ECCCCe
Confidence 456788888775 455677899988863311 24788999887 566663
No 67
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=25.48 E-value=31 Score=19.72 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 44 Gl~~GD~I~~ 53 (91)
T 2vsp_A 44 GLEDEDVIIE 53 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999974
No 68
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=25.34 E-value=33 Score=20.27 Aligned_cols=10 Identities=10% Similarity=0.198 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 59 gL~~GD~Il~ 68 (107)
T 1uhp_A 59 GLQIHDRIIE 68 (107)
T ss_dssp CCCSSCEEEE
T ss_pred CCCCCCEEEE
Confidence 7999999975
No 69
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.98 E-value=32 Score=20.06 Aligned_cols=10 Identities=20% Similarity=0.209 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 53 GL~~GD~I~~ 62 (100)
T 2eeh_A 53 GLCVGDKITE 62 (100)
T ss_dssp TCCSSCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 70
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=24.97 E-value=32 Score=19.78 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 51 gL~~GD~I~~ 60 (95)
T 1mfg_A 51 LLQPGDKIIQ 60 (95)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999975
No 71
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=24.93 E-value=32 Score=20.72 Aligned_cols=10 Identities=10% Similarity=0.424 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 60 GL~~GD~Il~ 69 (119)
T 2cs5_A 60 RLNEGDQVVL 69 (119)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 7999999974
No 72
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=24.90 E-value=33 Score=18.73 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 39 ~l~~GD~I~~ 48 (81)
T 2rcz_A 39 NIQEGDVVLK 48 (81)
T ss_dssp SCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999985
No 73
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=24.83 E-value=25 Score=19.65 Aligned_cols=10 Identities=10% Similarity=0.640 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 42 Gl~~GD~I~~ 51 (85)
T 1rgw_A 42 QLSQGDLVVA 51 (85)
T ss_dssp SCCCCSBEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 74
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=24.80 E-value=1.1e+02 Score=17.63 Aligned_cols=38 Identities=8% Similarity=-0.104 Sum_probs=22.8
Q ss_pred CCCcEEEecCCCCC--------CCCCCCeEEEEeeeeCCCCCCCccEEEEE
Q psy2555 46 KKGSVILSNHPKAG--------GSHLPDLTVITPVFIDSQPVEEGPVFFVA 88 (90)
Q Consensus 46 ~~GDv~i~NDPy~G--------gtHl~D~~~~~PVF~~Gel~~~~lv~~~a 88 (90)
+.|..++.+|.... ...-.--.+..|+..+|++ +|...
T Consensus 69 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~-----~Gvl~ 114 (153)
T 2w3g_A 69 EDPKPLRLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDES-----FGTLY 114 (153)
T ss_dssp HSCSCEEESSGGGSTTCCCCCTTCCCCCCEEEEEEEETTEE-----EEEEE
T ss_pred hcCCcEEecCcccCchhcCCCCcCCCCCeEEEeeEEECCEE-----EEEEE
Confidence 45566666653221 1122345688999999976 88643
No 75
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=24.38 E-value=33 Score=19.42 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=8.5
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 45 ~L~~GD~I~~ 54 (90)
T 2q9v_A 45 RLRSGDELIS 54 (90)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999975
No 76
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=24.15 E-value=33 Score=20.20 Aligned_cols=10 Identities=20% Similarity=0.394 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 23 GL~~GD~I~~ 32 (100)
T 3i18_A 23 VLHAGDLITE 32 (100)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 77
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=24.06 E-value=34 Score=20.05 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 17 GL~~GD~I~~ 26 (91)
T 2kjp_A 17 KIEVGDKIIS 26 (91)
T ss_dssp CCCSSCEEEE
T ss_pred cCCCCCEEEE
Confidence 5999999985
No 78
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=24.03 E-value=34 Score=19.41 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=9.0
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 21 Gl~~GD~I~~ 30 (91)
T 2zpm_A 21 GLQAGDRIVX 30 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 79
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=24.02 E-value=34 Score=19.68 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 46 GL~~GD~I~~ 55 (93)
T 2dls_A 46 GVKEGDRIIK 55 (93)
T ss_dssp TCCSSCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 80
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=23.95 E-value=71 Score=21.95 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCCCCCcEEEecCCCCCC
Q psy2555 33 AVKFQIDHRKGNFKKGSVILSNHPKAGG 60 (90)
Q Consensus 33 ~v~~~~~~~~~~l~~GDv~i~NDPy~Gg 60 (90)
.++.+++.+ -++||+++ |||.|.
T Consensus 201 l~~~~i~~~---~~~~~~vl--D~f~Gs 223 (260)
T 1g60_A 201 LIERIIRAS---SNPNDLVL--DCFMGS 223 (260)
T ss_dssp HHHHHHHHH---CCTTCEEE--ESSCTT
T ss_pred HHHHHHHHh---CCCCCEEE--ECCCCC
Confidence 446667655 37999888 999874
No 81
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=23.91 E-value=34 Score=19.11 Aligned_cols=10 Identities=40% Similarity=0.740 Sum_probs=8.5
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 43 ~l~~GD~I~~ 52 (85)
T 2i04_A 43 KMETGDVIVS 52 (85)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999975
No 82
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=23.68 E-value=62 Score=20.61 Aligned_cols=39 Identities=5% Similarity=0.056 Sum_probs=24.3
Q ss_pred CCCCcEEEecCCCCCCCCC----------CCeEEEEeeeeCCCCCCCccEEEEE
Q psy2555 45 FKKGSVILSNHPKAGGSHL----------PDLTVITPVFIDSQPVEEGPVFFVA 88 (90)
Q Consensus 45 l~~GDv~i~NDPy~GgtHl----------~D~~~~~PVF~~Gel~~~~lv~~~a 88 (90)
++.|..+..+|.+.-..+. .--.+..||+.+|++ +|+..
T Consensus 119 ~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~~~l-----~GvL~ 167 (208)
T 2lb5_A 119 WGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQEL-----WGLLV 167 (208)
T ss_dssp CCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEETTEE-----EEEEE
T ss_pred ccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEECCEe-----EEEEE
Confidence 3445556666665432211 123688999999977 88754
No 83
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.64 E-value=34 Score=20.25 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 63 GL~~GD~I~~ 72 (110)
T 1x5q_A 63 GVRVGDKLLE 72 (110)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 84
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=23.32 E-value=32 Score=19.77 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 47 Gl~~GD~I~~ 56 (96)
T 2v90_A 47 GMQAGDRLVA 56 (96)
T ss_dssp TCCTTEEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 85
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=23.25 E-value=35 Score=20.01 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 19 Gl~~GD~I~~ 28 (95)
T 3id1_A 19 QIAPGTELKA 28 (95)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999975
No 86
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=23.21 E-value=36 Score=19.89 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 59 gL~~GD~I~~ 68 (103)
T 1n7t_A 59 LLQPGDKIIQ 68 (103)
T ss_dssp SCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999974
No 87
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=23.12 E-value=33 Score=19.28 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 46 gl~~GD~I~~ 55 (87)
T 4e34_A 46 GLHVGDAILA 55 (87)
T ss_dssp CCCTTEEEEE
T ss_pred CCCCCCEEEE
Confidence 7999999875
No 88
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=23.09 E-value=36 Score=19.66 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 54 GL~~GD~I~~ 63 (96)
T 2ego_A 54 GLTPGDTIAS 63 (96)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 89
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=23.04 E-value=36 Score=19.27 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 44 GL~~GD~I~~ 53 (91)
T 1g9o_A 44 GLLAGDRLVE 53 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 90
>3cwf_A Alkaline phosphatase synthesis sensor protein PHO; PAS domain, alkaline phosphatase synthesi protein PHOR, structural genomics, PSI-2; HET: EPE; 2.20A {Bacillus subtilis subsp}
Probab=23.03 E-value=1.2e+02 Score=17.81 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=31.9
Q ss_pred ceeeEEeCCCCCeeeecCCCceeecchHHHHHHHHHhcCCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCCC
Q psy2555 4 FVSKESFGPDGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKAGGSHLPDLTVITPVFIDSQP 78 (90)
Q Consensus 4 d~~~~i~d~~G~~va~~~g~p~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~GgtHl~D~~~~~PVF~~Gel 78 (90)
+....|.|++|++++.+ +.. .+. ... |+.++ .+ ..| - |+.... . +++..||..+|+.
T Consensus 48 ~~rItiiD~~G~Vl~dS-~~~-~~~-~~~-v~~al---~~--~~g----r---~s~t~~-~-lyva~Pi~~~~~~ 104 (122)
T 3cwf_A 48 DVSASVIDTDGKVLYGS-NGR-SAD-SQK-VQALV---SG--HEG----I---LSTTDN-K-LYYGLSLRSEGEK 104 (122)
T ss_dssp TCEEEEEETTSCEEEET-TSS-CCC-HHH-HHHHH---TT--CCE----E---CCC-CS-C-CEEEEEEEETTEE
T ss_pred CcEEEEECCCCcEEEeC-CCc-ccc-hHH-HHHHH---hc--CCC----e---eeccCC-c-EEEEEEEeeCCeE
Confidence 34678999999999876 211 111 111 33333 22 124 1 221223 4 9999999877764
No 91
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=22.91 E-value=37 Score=19.18 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=8.9
Q ss_pred C-CCCCcEEEe
Q psy2555 44 N-FKKGSVILS 53 (90)
Q Consensus 44 ~-l~~GDv~i~ 53 (90)
+ |++||+++.
T Consensus 40 G~l~~GD~I~~ 50 (92)
T 3cyy_A 40 GNIQEGDVVLK 50 (92)
T ss_dssp CCCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 5 999999985
No 92
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=22.83 E-value=24 Score=20.90 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=20.7
Q ss_pred eeecchHHHHHHHHHhcCCCCCCCcEEEecCCC
Q psy2555 25 VHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPK 57 (90)
Q Consensus 25 ~~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy 57 (90)
+-+|.....++.++ +|++|||+-.+-+.
T Consensus 21 v~Lg~~~itl~ell-----~L~~GdVi~Ld~~~ 48 (84)
T 1o9y_A 21 LRCGELRLTLAELR-----RLDAGTILEVTGIS 48 (84)
T ss_dssp EEEEEEEEEHHHHH-----TCCTTCEEEECSSC
T ss_pred EEEecceeEHHHHh-----cCCCCCEEEeCCCC
Confidence 34666666677776 69999999998643
No 93
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=22.77 E-value=34 Score=19.53 Aligned_cols=10 Identities=10% Similarity=0.504 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 46 Gl~~GD~I~~ 55 (95)
T 3r68_A 46 GLKNNDLVVA 55 (95)
T ss_dssp TCCTTEEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 94
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=22.65 E-value=36 Score=20.21 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 52 Gl~~GD~I~~ 61 (113)
T 2pzd_A 52 GLRPGDVILA 61 (113)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 95
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=22.61 E-value=1.1e+02 Score=16.98 Aligned_cols=17 Identities=0% Similarity=-0.250 Sum_probs=12.0
Q ss_pred HHHHHhcCCCCCCCcEEEe
Q psy2555 35 KFQIDHRKGNFKKGSVILS 53 (90)
Q Consensus 35 ~~~~~~~~~~l~~GDv~i~ 53 (90)
+.+.+.+ +|++||.+..
T Consensus 28 keiR~~L--gi~~Gd~l~i 44 (59)
T 1yfb_A 28 IELRRTL--GIAEKDALEI 44 (59)
T ss_dssp HHHHHHT--TCCTTCEEEE
T ss_pred HHHHHHc--CCCCCCEEEE
Confidence 5556656 5999998754
No 96
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=22.59 E-value=38 Score=19.82 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 53 GL~~GD~I~~ 62 (100)
T 1whd_A 53 GLQQLDTVLQ 62 (100)
T ss_dssp TCCSSCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999974
No 97
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=22.32 E-value=36 Score=19.96 Aligned_cols=10 Identities=0% Similarity=0.162 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 55 gl~~GD~I~~ 64 (107)
T 2h2b_A 55 QLQENDRVAM 64 (107)
T ss_dssp TBCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999975
No 98
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=22.28 E-value=45 Score=21.18 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=10.9
Q ss_pred CCCCCcEEEecC
Q psy2555 44 NFKKGSVILSNH 55 (90)
Q Consensus 44 ~l~~GDv~i~ND 55 (90)
.+++||.++.|+
T Consensus 34 ~i~vGD~I~f~~ 45 (113)
T 1xne_A 34 DIKRGDKIIFND 45 (113)
T ss_dssp TCCTTCEEEETT
T ss_pred ccCCCCEEEEcc
Confidence 579999999998
No 99
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.24 E-value=30 Score=20.16 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=9.0
Q ss_pred CCCCCCcEEEe
Q psy2555 43 GNFKKGSVILS 53 (90)
Q Consensus 43 ~~l~~GDv~i~ 53 (90)
..|++||+++-
T Consensus 46 agL~~GD~Il~ 56 (96)
T 2edv_A 46 GKLFPGDQILQ 56 (96)
T ss_dssp TTSCTTCBEEE
T ss_pred hCCCCCCEEEE
Confidence 37999999974
No 100
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=22.21 E-value=90 Score=21.70 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEecCCCCCC
Q psy2555 31 QEAVKFQIDHRKGNFKKGSVILSNHPKAGG 60 (90)
Q Consensus 31 ~~~v~~~~~~~~~~l~~GDv~i~NDPy~Gg 60 (90)
..++..+++.+ .++||.++..+|+.+.
T Consensus 109 t~a~~~~~~~~---~~~gd~v~~~~~~~~~ 135 (384)
T 1bs0_A 109 FAANQAVIAAM---MAKEDRIAADRLSHAS 135 (384)
T ss_dssp HHHHHHHHHHH---CCTTCEEEEETTCCHH
T ss_pred HHHHHHHHHHh---CCCCcEEEEcccccHH
Confidence 45555566555 5799999999999763
No 101
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=22.05 E-value=39 Score=19.20 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 51 ~l~~GD~I~~ 60 (94)
T 2fe5_A 51 RLQIGDRLLA 60 (94)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 4999999975
No 102
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=21.96 E-value=1.2e+02 Score=18.09 Aligned_cols=11 Identities=36% Similarity=0.727 Sum_probs=8.0
Q ss_pred CCCCCcEEEec
Q psy2555 44 NFKKGSVILSN 54 (90)
Q Consensus 44 ~l~~GDv~i~N 54 (90)
.|++||+++.+
T Consensus 32 ~i~~Gd~v~Vd 42 (109)
T 1kca_A 32 SFPDGMLILVD 42 (109)
T ss_dssp CCCTTCEEEEE
T ss_pred eeCCCCEEEEe
Confidence 57777777775
No 103
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=21.93 E-value=39 Score=19.15 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 47 ~L~~GD~I~~ 56 (92)
T 2qg1_A 47 RLMQGDQILM 56 (92)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 4999999985
No 104
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.92 E-value=39 Score=19.87 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 58 GL~~GD~I~~ 67 (104)
T 1wi2_A 58 GLQEGDQVLA 67 (104)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 105
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=21.91 E-value=39 Score=19.41 Aligned_cols=10 Identities=50% Similarity=0.637 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 55 ~L~~GD~I~~ 64 (98)
T 1ihj_A 55 RLKVGDRILS 64 (98)
T ss_dssp SCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999985
No 106
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=21.84 E-value=91 Score=19.29 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=39.0
Q ss_pred eeEEeCCCCCeeeecCCCceeecc-hHHHHHHHHHhcCCCCCCCcEEEecCCCCCCCCCCCeEEEEeeee-CCCCCCCcc
Q psy2555 6 SKESFGPDGGLVSNAPHIPVHLGS-MQEAVKFQIDHRKGNFKKGSVILSNHPKAGGSHLPDLTVITPVFI-DSQPVEEGP 83 (90)
Q Consensus 6 ~~~i~d~~G~~va~~~g~p~~~g~-~~~~v~~~~~~~~~~l~~GDv~i~NDPy~GgtHl~D~~~~~PVF~-~Gel~~~~l 83 (90)
...|.|++|..++.+. |-.+|. +.. ..+..-+ .|-.+.... .++.-+-+..+.||+. +|++
T Consensus 58 ~i~v~d~~G~~~~~~~--~~~iG~~~~~------~~~~~al-~G~~~~~~~---~~~~g~~~~~~~PV~~~~g~v----- 120 (142)
T 3by8_A 58 FIVVTDMQSLRYSHPE--AQRIGQPFKG------DDILKAL-NGEENVAIN---RGFLAQALRVFTPIYDENHKQ----- 120 (142)
T ss_dssp EEEEEETTCBBSCCSS--GGGTTSBCCC------GGGTGGG-GTCCEEEEE---CSSSSCEEEEEEEEECTTSCE-----
T ss_pred EEEEECCCCcEEECCC--hHHCCCcCCC------CCHHHHh-CCCeEEEEe---cCccEEEEEEEEeEEcCCCCE-----
Confidence 5688999998887654 334443 110 1111112 344333321 2455678999999996 6877
Q ss_pred EEEEEe
Q psy2555 84 VFFVAN 89 (90)
Q Consensus 84 v~~~a~ 89 (90)
+|.+..
T Consensus 121 iGvv~v 126 (142)
T 3by8_A 121 IGVVAI 126 (142)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887653
No 107
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.81 E-value=39 Score=19.67 Aligned_cols=10 Identities=10% Similarity=0.504 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 47 Gl~~GD~I~~ 56 (102)
T 2d90_A 47 GLKNNDLVVA 56 (102)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 108
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=21.79 E-value=40 Score=19.32 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 47 ~L~~GD~I~~ 56 (95)
T 2vwr_A 47 RLSSNDRVLA 56 (95)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 4999999985
No 109
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.65 E-value=41 Score=19.60 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 48 GL~~GD~Il~ 57 (90)
T 1y7n_A 48 GVRVGHRIIE 57 (90)
T ss_dssp TCCSSCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 110
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=21.64 E-value=40 Score=19.33 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 50 ~l~~GD~I~~ 59 (97)
T 2jil_A 50 TIKPGDRLLS 59 (97)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999985
No 111
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=21.47 E-value=40 Score=19.55 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=8.2
Q ss_pred CCCCcEEEe
Q psy2555 45 FKKGSVILS 53 (90)
Q Consensus 45 l~~GDv~i~ 53 (90)
|++||+++.
T Consensus 58 l~~GD~I~~ 66 (103)
T 2fcf_A 58 LKPGDRIVE 66 (103)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999985
No 112
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=21.45 E-value=40 Score=19.58 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 62 Gl~~GD~I~~ 71 (104)
T 3sfj_A 62 GLQIGDKIMQ 71 (104)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 113
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=21.24 E-value=55 Score=19.31 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=12.4
Q ss_pred HHHHHhcCCCCCCCcEEEec
Q psy2555 35 KFQIDHRKGNFKKGSVILSN 54 (90)
Q Consensus 35 ~~~~~~~~~~l~~GDv~i~N 54 (90)
+.+.+.+ +|++||+|..+
T Consensus 31 aeI~kaL--gIk~gD~fel~ 48 (68)
T 3o27_A 31 KDIAEAL--DIKPDDTFILN 48 (68)
T ss_dssp HHHHHHT--TCCTTCCEEEE
T ss_pred HHHHHHh--CCCCCCEEEEE
Confidence 3444445 59999998764
No 114
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=21.17 E-value=41 Score=20.13 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 55 GL~~GD~I~~ 64 (114)
T 2edz_A 55 GLLDGDRVLR 64 (114)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 115
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=21.15 E-value=41 Score=19.67 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 43 Gl~~GD~I~~ 52 (106)
T 3ngh_A 43 GLLDGDRVLR 52 (106)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 116
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=21.05 E-value=40 Score=19.66 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 21 GL~~GD~Il~ 30 (94)
T 2kl1_A 21 RLEAGDRIAA 30 (94)
T ss_dssp TBCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 117
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=20.97 E-value=41 Score=19.97 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=8.8
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 52 Gl~~GD~I~~ 61 (112)
T 2p3w_A 52 GIQDGDIIVK 61 (112)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 118
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=20.88 E-value=44 Score=20.47 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=9.2
Q ss_pred CCCCCCcEEEe
Q psy2555 43 GNFKKGSVILS 53 (90)
Q Consensus 43 ~~l~~GDv~i~ 53 (90)
+.|++||+++.
T Consensus 70 ggL~~GD~Il~ 80 (120)
T 2iwo_A 70 QKLRVGDRIVT 80 (120)
T ss_dssp TCCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 47999999874
No 119
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=20.86 E-value=42 Score=19.34 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=8.7
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 51 Gl~~GD~I~~ 60 (99)
T 3khf_A 51 GLRAGDLITH 60 (99)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 120
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=20.84 E-value=1.4e+02 Score=20.90 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=23.0
Q ss_pred eecchHHHHHHHHHhcCCCCCCCcEEEecCCCCCC
Q psy2555 26 HLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKAGG 60 (90)
Q Consensus 26 ~~g~~~~~v~~~~~~~~~~l~~GDv~i~NDPy~Gg 60 (90)
++.+-..++..+++.+ +++||.+++-+|+.++
T Consensus 108 ~~~ggt~a~~~~~~~~---~~~gd~V~~~~p~~~~ 139 (398)
T 3a2b_A 108 LFSTGFQSNLGPLSCL---MGRNDYILLDERDHAS 139 (398)
T ss_dssp EESSHHHHHHHHHHHS---SCTTCEEEEETTCCHH
T ss_pred EECCHHHHHHHHHHHH---hCCCCEEEECCccCHH
Confidence 3444456666676655 6799999999998753
No 121
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=20.80 E-value=1.3e+02 Score=19.72 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=17.3
Q ss_pred ecchHHHHHHHHH-h----cCCCCCCCc-EEEecCC
Q psy2555 27 LGSMQEAVKFQID-H----RKGNFKKGS-VILSNHP 56 (90)
Q Consensus 27 ~g~~~~~v~~~~~-~----~~~~l~~GD-v~i~NDP 56 (90)
+|-+...|...+. + |.+...-|| |++.|-=
T Consensus 23 LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNae 58 (140)
T 3v2d_N 23 LGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNAD 58 (140)
T ss_dssp TTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGG
T ss_pred hHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCc
Confidence 4555666655554 2 334677898 4456743
No 122
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=20.59 E-value=43 Score=19.27 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 48 ~l~~GD~I~~ 57 (97)
T 1n7e_A 48 AIHIGDRILA 57 (97)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999975
No 123
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=20.48 E-value=44 Score=19.19 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 48 ~l~~GD~I~~ 57 (98)
T 2opg_A 48 RLWAGDQILE 57 (98)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999985
No 124
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.48 E-value=42 Score=20.46 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=8.9
Q ss_pred C-CCCCcEEEe
Q psy2555 44 N-FKKGSVILS 53 (90)
Q Consensus 44 ~-l~~GDv~i~ 53 (90)
+ |++||+|+.
T Consensus 65 G~l~~GD~I~~ 75 (124)
T 1wh1_A 65 GRIREGDRIIQ 75 (124)
T ss_dssp CCCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 5 999999985
No 125
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=20.41 E-value=1.3e+02 Score=19.90 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=16.5
Q ss_pred ecchHHHHHHHHH-h----cCCCCCCCc-EEEecC
Q psy2555 27 LGSMQEAVKFQID-H----RKGNFKKGS-VILSNH 55 (90)
Q Consensus 27 ~g~~~~~v~~~~~-~----~~~~l~~GD-v~i~ND 55 (90)
+|-+...|...+. + |.+...-|| |++.|-
T Consensus 25 LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNa 59 (142)
T 3r8s_J 25 LGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNA 59 (142)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECG
T ss_pred hHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeC
Confidence 4555555555554 2 334677898 445664
No 126
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=20.33 E-value=42 Score=19.47 Aligned_cols=9 Identities=22% Similarity=0.711 Sum_probs=8.0
Q ss_pred CCCCcEEEe
Q psy2555 45 FKKGSVILS 53 (90)
Q Consensus 45 l~~GDv~i~ 53 (90)
|++||+++.
T Consensus 50 L~~GD~I~~ 58 (96)
T 2qkv_A 50 LQRGDIITK 58 (96)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999974
No 127
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=20.24 E-value=45 Score=18.88 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 51 ~l~~GD~I~~ 60 (97)
T 2iwn_A 51 RIQIGDQIIA 60 (97)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999984
No 128
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.21 E-value=41 Score=19.65 Aligned_cols=10 Identities=0% Similarity=0.082 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
+|++||+++.
T Consensus 49 Gl~~GD~I~~ 58 (106)
T 2eei_A 49 GVLADDHLIE 58 (106)
T ss_dssp TCCSSEEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999974
No 129
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.09 E-value=34 Score=19.89 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=8.6
Q ss_pred CCCCCcEEEe
Q psy2555 44 NFKKGSVILS 53 (90)
Q Consensus 44 ~l~~GDv~i~ 53 (90)
.|++||+++.
T Consensus 52 GL~~GD~I~~ 61 (101)
T 1uez_A 52 GLRVGDQILR 61 (101)
T ss_dssp TCCSSCCEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
Done!