RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2555
         (90 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.14
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 13/70 (18%)

Query: 22  HIPVHLGSMQEAVKFQ------IDHRKGNFKKGSVILSNHP-KAGGSHLPDLTVIT---P 71
           HI  HL +++   +        +D R   F +  +   +    A GS L  L  +    P
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 72  VFIDSQPVEE 81
              D+ P  E
Sbjct: 533 YICDNDPKYE 542


>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus,
           EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A
           {Human herpesvirus 4} PDB: 2w4b_A
          Length = 470

 Score = 25.8 bits (56), Expect = 2.5
 Identities = 4/20 (20%), Positives = 10/20 (50%)

Query: 62  HLPDLTVITPVFIDSQPVEE 81
            +P   ++TPV +    + +
Sbjct: 416 EIPVAVLVTPVVLPDSVIRK 435


>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human
           herpesvirus 8 type M} PDB: 3pov_A*
          Length = 508

 Score = 25.1 bits (54), Expect = 3.5
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 62  HLPDLTVITPVFIDSQPVEE 81
            +P L ++TPV+        
Sbjct: 454 EIPTLLIVTPVYFPRGAKHR 473


>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor,
           irreversible PROT inhibitor, conformational change,
           blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo
           sapiens}
          Length = 1451

 Score = 25.1 bits (53), Expect = 4.6
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 34  VKFQIDHRKGNFKKGSVILSNHPKAGGSHLPDLTVITPVFID 75
           V   +      +K G+  LS     G S    L    P F++
Sbjct: 731 VGVTVPDTITEWKAGAFCLSEDAGLGISSTASLRAFQPFFVE 772


>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
           center for structural genomics of infec diseases, csgid;
           HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
           3pyz_A* 3qcz_A*
          Length = 437

 Score = 24.8 bits (55), Expect = 5.3
 Identities = 4/12 (33%), Positives = 7/12 (58%)

Query: 64  PDLTVITPVFID 75
            D+  IT + +D
Sbjct: 164 SDVAAITSIALD 175


>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
           ATP-binding, folate biosynthesis, ligase,
           multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
           {Escherichia coli} PDB: 1w7k_A*
          Length = 422

 Score = 24.8 bits (55), Expect = 5.5
 Identities = 4/12 (33%), Positives = 8/12 (66%)

Query: 64  PDLTVITPVFID 75
            D+ V+T + +D
Sbjct: 161 ADVAVVTSIALD 172


>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
           acyl-COA synthetase, xenobiotic/medium-chain FA COA
           ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
           3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
          Length = 570

 Score = 24.1 bits (53), Expect = 9.5
 Identities = 3/17 (17%), Positives = 6/17 (35%)

Query: 14  GGLVSNAPHIPVHLGSM 30
           G     +  + +  G M
Sbjct: 360 GLTCMVSKTMKIKPGYM 376


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0386    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,362,666
Number of extensions: 69152
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 11
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)