RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2555
         (90 letters)



>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase
          GshA {Escherichia coli [TaxId: 562]}
          Length = 518

 Score = 26.5 bits (58), Expect = 0.51
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 11/43 (25%)

Query: 46 KKGSVILSNHPKAGGSHL--PDLT---------VITPVFIDSQ 77
            G++  + HP+A GS L    +T          ITPV  D +
Sbjct: 35 ADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIE 77


>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36,
          VPS36 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 129

 Score = 25.3 bits (55), Expect = 0.87
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 31 QEAVKFQIDHRKGNFKKGSVILSNH 55
          Q  V+      K  F  G+++LS H
Sbjct: 19 QRGVRIYDGEEKIKFDAGTLLLSTH 43


>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 184

 Score = 23.7 bits (50), Expect = 3.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 27  LGSMQEAVKFQIDHRKGNFKK 47
              M    K QI HRK  F++
Sbjct: 155 FAEMTTEEKSQISHRKKAFEE 175


>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
           ITPase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 194

 Score = 23.7 bits (50), Expect = 4.3
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 27  LGSMQEAVKFQIDHRKGNFKK 47
              M +A K  + HR     +
Sbjct: 164 YAEMPKAEKNAVSHRFRALLE 184


>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli
           [TaxId: 562]}
          Length = 209

 Score = 23.6 bits (50), Expect = 4.4
 Identities = 5/21 (23%), Positives = 6/21 (28%)

Query: 27  LGSMQEAVKFQIDHRKGNFKK 47
              +    K  I HR    K 
Sbjct: 181 AAELTREEKSAISHRGQALKL 201


>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 186

 Score = 23.3 bits (49), Expect = 4.8
 Identities = 5/21 (23%), Positives = 6/21 (28%)

Query: 27  LGSMQEAVKFQIDHRKGNFKK 47
              M    K  + HR    K 
Sbjct: 155 FAEMTIEEKNALSHRGKALKA 175


>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 204

 Score = 22.8 bits (49), Expect = 8.5
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 41  RKGNFKKGSVILSNHPKAGGSHLP 64
             GNFK+   +         SH+P
Sbjct: 125 ENGNFKEAEEVFERIFGDPNSHMP 148


>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries)
          [TaxId: 9940]}
          Length = 309

 Score = 22.8 bits (48), Expect = 9.4
 Identities = 6/19 (31%), Positives = 6/19 (31%)

Query: 49 SVILSNHPKAGGSHLPDLT 67
          SV  SNH          L 
Sbjct: 37 SVQFSNHTGYSHWKGQVLN 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,863
Number of extensions: 12771
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 9
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)