BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2558
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 134/222 (60%), Gaps = 10/222 (4%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P +DWR AVT VKDQ MCGS WAFS TGN+EG + L+SLSEQEL+
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDETD 246
SNA+ I K GGLE E Y Y+G ++C+ + + +V I V +S++E
Sbjct: 62 ACMGGLPSNAYSAI--KNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNEQK 119
Query: 247 MAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTH 306
+A +L + GP++VAINA+ +QFY G+S P++ C + H+VL+VGYG
Sbjct: 120 LAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCS--PWLIDHAVLLVGYG------QR 171
Query: 307 KAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYVRSALV 348
VP+W IKNSWG WGEKGY+ L+RG G+CG+N SA+V
Sbjct: 172 SDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 213
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 167 bits (422), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 120/225 (53%), Gaps = 15/225 (6%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P A DWRE AVT VKDQ CGS WAFST GNIEG + LVSLSEQ L+
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPY---RGDDKACRLNKKATQVKINGYVSVSRD 243
+ NAF+ I++ GG + E +YPY G+ C++N I +V + +D
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQD 121
Query: 244 ETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
E +A YL ENGP+A+A++A + Y G+ +E L H VL+VGY
Sbjct: 122 EDAIAAYLAENGPLAIAVDATSFMDYNGGI------LTSCTSEQLDHGVLLVGYNDASNP 175
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYVRSALV 348
PYWIIKNSW WGE GY R+ +G C +N V SA+V
Sbjct: 176 ------PYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVV 214
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 162/310 (52%), Gaps = 28/310 (9%)
Query: 42 FNYFLEQHNKTYATLVEYYSRLHIFSGNLRKI-QLLQDTEHGSGVY--GLNEFSDLSTAE 98
++ F H K+Y++ +E R IF N+ KI + E G Y +N+F D+S E
Sbjct: 27 WSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEE 86
Query: 99 FQAKYL--GFKLKPSYADR-SVPAMIPNITLPRAFDWREYDAVTGVKDQTMCGSSWAFST 155
F A Y+ G KP + + +P + L + DWR +AV+ VKDQ CGSSW+FST
Sbjct: 87 FLA-YVNRGKAQKPKHPENLRMPYVSSKKPLAASVDWRS-NAVSEVKDQGQCGSSWSFST 144
Query: 156 TGNIEGVYAAKTKKLVSLSEQELIXXXXXXXXXXXXS--ISNAFDTIMSKLGGGLEEEKT 213
TG +EG A + +L SLSEQ LI + +AF I G+ E
Sbjct: 145 TGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDY---GIMSESA 201
Query: 214 YPYRGDDKACRLNKKATQVKINGYVSV-SRDETDMAKYLVENGPMAVAINAY-ALQFYVT 271
YPY CR + + ++GY + S DE +A + + GP+AVAI+A LQFY
Sbjct: 202 YPYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSG 261
Query: 272 GVSHPIQFFCDGGNE-NLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRL 330
G+ F+ N+ +L+H VL+VGYG D + YWI+KNSWG GWGE GY+R
Sbjct: 262 GL-----FYDQTCNQSDLNHGVLVVGYGSDNGQ------DYWILKNSWGSGWGESGYWRQ 310
Query: 331 YRGDG-SCGI 339
R G +CGI
Sbjct: 311 VRNYGNNCGI 320
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 155/313 (49%), Gaps = 33/313 (10%)
Query: 41 LFNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQ---LLQDTEHGSGVYGLNEFSDLSTA 97
L++ + +NK Y + + R +I+ N++ IQ L D + GLN+F+D++
Sbjct: 4 LWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFE 62
Query: 98 EFQAKYLGFKLKPS-YADRSVPAMIPNITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTT 156
EF+AKYL + S VP N +P DWRE VT VKDQ CGS WAFSTT
Sbjct: 63 EFKAKYLTEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTT 122
Query: 157 GNIEGVYAAKTKKLVSLSEQELIXXXXXXXXXXXXS--ISNAFDTIMSKLGGGLEEEKTY 214
G +EG Y + +S SEQ+L+ + NA+ + GLE E +Y
Sbjct: 123 GTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQF---GLETESSY 179
Query: 215 PYRGDDKACRLNKKATQVKINGYVSV-SRDETDMAKYLVENGPMAVAINA------YALQ 267
PY + CR NK+ K+ G+ +V S E ++ + GP AVA++ Y
Sbjct: 180 PYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSG 239
Query: 268 FYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGY 327
Y + P++ ++H+VL VGYG T YWI+KNSWG WGE+GY
Sbjct: 240 IYQSQTCSPLR---------VNHAVLAVGYG------TQGGTDYWIVKNSWGLSWGERGY 284
Query: 328 FRLYRGDGS-CGI 339
R+ R G+ CGI
Sbjct: 285 IRMVRNRGNMCGI 297
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 157/301 (52%), Gaps = 22/301 (7%)
Query: 49 HNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVY----GLNEFSDLSTAEFQAKYL 104
HN+ Y E + R ++ N++ I+L + E+ G + +N F D+++ EF+
Sbjct: 19 HNRLYGMNEEGWRRA-VWEKNMKMIEL-HNQEYREGKHSFTMAMNAFGDMTSEEFRQVMN 76
Query: 105 GFK-LKPSYADRSVPAMIPNITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVY 163
GF+ KP + PR+ DWRE VT VK+Q CGS WAFS TG +EG
Sbjct: 77 GFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQM 134
Query: 164 AAKTKKLVSLSEQELIXXXXXXXXXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDK 221
KT +L+SLSEQ L+ + AF + GGL+ E++YPY ++
Sbjct: 135 FRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEE 192
Query: 222 ACRLNKKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQF 279
+C+ N K + G+V + + E + K + GP++VAI+A + FY G I F
Sbjct: 193 SCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEG----IYF 248
Query: 280 FCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CG 338
D +E++ H VL+VGYG + T+ + YW++KNSWGE WG GY ++ + + CG
Sbjct: 249 EPDCSSEDMDHGVLVVGYGFESTESDNNK--YWLVKNSWGEEWGMGGYVKMAKDRRNHCG 306
Query: 339 I 339
I
Sbjct: 307 I 307
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 154/302 (50%), Gaps = 25/302 (8%)
Query: 49 HNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVY----GLNEFSDLSTAEFQAKYL 104
H K Y V+ SR I+ NL+ I + + E GV+ +N D+++ E K
Sbjct: 18 HRKQYNNKVDEISRRLIWEKNLKYISI-HNLEASLGVHTYELAMNHLGDMTSEEVVQKMT 76
Query: 105 GFKLKPSYADRSVPAMIPNIT--LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGV 162
G K+ S++ + IP P + D+R+ VT VK+Q CGS WAFS+ G +EG
Sbjct: 77 GLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQ 136
Query: 163 YAAKTKKLVSLSEQELIXXXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKA 222
KT KL++LS Q L+ ++NAF + G++ E YPY G +++
Sbjct: 137 LKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEES 194
Query: 223 CRLNKKATQVKINGYVSVSR-DETDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQF 279
C N K GY + +E + + + GP++VAI+A + QFY GV +
Sbjct: 195 CMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV-----Y 249
Query: 280 FCDGGN-ENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRG-DGSC 337
+ + N +NL+H+VL VGYG+ K +WIIKNSWGE WG KGY + R + +C
Sbjct: 250 YDESCNSDNLNHAVLAVGYGI------QKGNKHWIIKNSWGENWGNKGYILMARNKNNAC 303
Query: 338 GI 339
GI
Sbjct: 304 GI 305
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 156/301 (51%), Gaps = 22/301 (7%)
Query: 49 HNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVY----GLNEFSDLSTAEFQAKYL 104
HN+ Y E + R ++ N++ I+L + E+ G + +N F D+++ EF+
Sbjct: 15 HNRLYGMNEEGWRRA-VWEKNMKMIEL-HNQEYREGKHSFTMAMNAFGDMTSEEFRQVMN 72
Query: 105 GFK-LKPSYADRSVPAMIPNITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVY 163
G + KP + PR+ DWRE VT VK+Q CGSSWAFS TG +EG
Sbjct: 73 GLQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSSWAFSATGALEGQM 130
Query: 164 AAKTKKLVSLSEQELIXXXXXXXXXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDK 221
KT +L+SLSEQ L+ + AF + GGL+ E++YPY ++
Sbjct: 131 FRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEE 188
Query: 222 ACRLNKKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQF 279
+C+ N K + G+V + + E + K + GP++VAI+A + FY G I F
Sbjct: 189 SCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEG----IYF 244
Query: 280 FCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CG 338
D +E++ H VL+VGYG + T+ YW++KNSWGE WG GY ++ + + CG
Sbjct: 245 EPDCSSEDMDHGVLVVGYGFESTE--SDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 302
Query: 339 I 339
I
Sbjct: 303 I 303
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P A DWR AVT VKDQ CGS WAFS GN+E + L +LSEQ L+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPY---RGDDKACRLNKKATQVKINGYVSVSRD 243
++NAF+ I+ + G + E +YPY G C + I G+V + +D
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 244 ETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
E +A +L NGP+AVA++A + Y GV +E L H VL+VGY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV------SEQLDHGVLLVGYN----- 170
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYVRSALV 348
AVPYWIIKNSW WGE+GY R+ +G C + + SA+V
Sbjct: 171 -DSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P A DWR AVT VKDQ CGS WAFS GN+E + L +LSEQ L+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPY---RGDDKACRLNKKATQVKINGYVSVSRD 243
++NAF+ I+ + G + E +YPY G C + I G+V + +D
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 244 ETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
E +A +L NGP+AVA++A + Y GV +E L H VL+VGY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV------SEALDHGVLLVGYN----- 170
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYVRSALV 348
AVPYWIIKNSW WGE+GY R+ +G C + + SA+V
Sbjct: 171 -DSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P A DWR AVT VKDQ CGS WAFS GN+E + L +L+EQ L+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPY---RGDDKACRLNKKATQVKINGYVSVSRD 243
++NAF+ I+ + G + E +YPY G C + I G+V + +D
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 244 ETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
E +A +L NGP+AVA++A + Y GV +E L H VL+VGY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV------SEQLDHGVLLVGYN----- 170
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYVRSALV 348
AVPYWIIKNSW WGE+GY R+ +G C + + SA+V
Sbjct: 171 -DGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P A DWR AVT VKDQ CGS WAFS GN+E + L +L+EQ L+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPY---RGDDKACRLNKKATQVKINGYVSVSRD 243
++NAF+ I+ + G + E +YPY G C + I G+V + +D
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 244 ETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
E +A +L NGP+AVA++A + Y GV +E L H VL+VGY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV------SEQLDHGVLLVGYN----- 170
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYVRSALV 348
AVPYWIIKNSW WGE+GY R+ +G C + + SA+V
Sbjct: 171 -DGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 137/258 (53%), Gaps = 16/258 (6%)
Query: 88 LNEFSDLSTAEFQAKYLGFK-LKPSYADRSVPAMIPNITLPRAFDWREYDAVTGVKDQTM 146
+N F D+++ EF+ GF+ KP + PR+ DWRE VT VK+Q
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQ 59
Query: 147 CGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXXXXXXXS--ISNAFDTIMSKL 204
CGS WAFS TG +EG KT +L+SLSEQ L+ + AF +
Sbjct: 60 CGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN- 118
Query: 205 GGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINA- 263
GGL+ E++YPY +++C+ N K + G+V + + E + K + GP++VAI+A
Sbjct: 119 -GGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG 177
Query: 264 -YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGW 322
+ FY G I F D +E++ H VL+VGYG + T+ + YW++KNSWGE W
Sbjct: 178 HESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFESTESDNNK--YWLVKNSWGEEW 231
Query: 323 GEKGYFRLYRGDGS-CGI 339
G GY ++ + + CGI
Sbjct: 232 GMGGYVKMAKDRRNHCGI 249
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 124/225 (55%), Gaps = 25/225 (11%)
Query: 125 TLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXX 184
T+P + DWR+ AVT VKDQ CGS WAFST +EG+ KT KLVSLSEQEL+
Sbjct: 1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD 60
Query: 185 XXXXXXXSISN-AFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKK-ATQVKINGYVSVSR 242
+ + AF+ I + GG+ E YPY D C ++K+ A V I+G+ +V
Sbjct: 61 QNQGCNGGLMDYAFEFIKQR--GGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPE 118
Query: 243 DETDMAKYLVENGPMAVAINAYA--LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYG-- 298
++ + V N P++VAI+A QFY GV F G E L H V IVGYG
Sbjct: 119 NDENALLKAVANQPVSVAIDAGGSDFQFYSEGV-----FTGSCGTE-LDHGVAIVGYGTT 172
Query: 299 VDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRG----DGSCGI 339
+D TK YW +KNSWG WGEKGY R+ RG +G CGI
Sbjct: 173 IDGTK-------YWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 210
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 114/221 (51%), Gaps = 19/221 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR VT VKDQ CGS WAFSTTG +EG + AKT KLVSLSEQEL+
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 186 XXXXXX--SISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRD 243
+++AF ++ GG+ E YPY D+ CR VKI G+ V R
Sbjct: 67 GNQSCSGGEMNDAFQYVLDS--GGICSEDAYPYLARDEECRAQSCEKVVKILGFKDVPRR 124
Query: 244 ETDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDR 301
K + P+++AI A QFY GV F +L H VL+VGYG D+
Sbjct: 125 SEAAMKAALAKSPVSIAIEADQMPFQFYHEGV------FDASCGTDLDHGVLLVGYGTDK 178
Query: 302 TKFTHKAVPYWIIKNSWGEGWGEKG--YFRLYRG-DGSCGI 339
+WI+KNSWG GWG G Y +++G +G CG+
Sbjct: 179 ----ESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGL 215
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 121/226 (53%), Gaps = 26/226 (11%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWR+ AVTGVKDQ CGS WAFST ++EG+ A +T LVSLSEQELI
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 186 XXXXXXSI-SNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQ----VKINGYVSV 240
+ NAF+ I K GGL E YPYR C + + A V I+G+ V
Sbjct: 64 NDGCQGGLMDNAFEYI--KNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDV 121
Query: 241 -SRDETDMAKYLVENGPMAVAINAY--ALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGY 297
+ E D+A+ V N P++VA+ A A FY GV F + G E L H V +VGY
Sbjct: 122 PANSEEDLAR-AVANQPVSVAVEASGKAFMFYSEGV-----FTGECGTE-LDHGVAVVGY 174
Query: 298 GVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
GV YW +KNSWG WGE+GY R+ + G+ CGI
Sbjct: 175 GV-----AEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGI 215
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 13/218 (5%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CGS+WAFS TG +EG KT +L+SLSEQ L+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 62 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 119
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D +E++ H VL+VGYG + T
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
+ + YW++KNSWGE WG GY ++ + + CGI
Sbjct: 176 ESDNNK--YWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 13/218 (5%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CGS+WAFS TG +EG KT +L+SLSEQ L+
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 63 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 120
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D +E++ H VL+VGYG + T
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
+ + YW++KNSWGE WG GY ++ + + CGI
Sbjct: 177 ESDNNK--YWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 212
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 13/218 (5%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CGS WAFS TG +EG KT +L+SLSEQ L+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 62 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 119
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D +E++ H VL+VGYG + T
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
+ + YW++KNSWGE WG GY ++ + + CGI
Sbjct: 176 ESDNNK--YWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 13/218 (5%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CGS WAFS TG +EG KT +L+SLSEQ L+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 62 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 119
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D +E++ H VL+VGYG + T
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
+ + YW++KNSWGE WG GY ++ + + CGI
Sbjct: 176 ESDNNK--YWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 13/218 (5%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CGS WAFS TG +EG KT +L+SLSEQ L+
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 63 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 120
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D +E++ H VL+VGYG + T
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
+ + YW++KNSWGE WG GY ++ + + CGI
Sbjct: 177 ESDNNK--YWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 212
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 156/321 (48%), Gaps = 36/321 (11%)
Query: 31 HHLHHVKHTALFNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVY---- 86
HH H K T + K Y E R I+ NL K +L + EH G++
Sbjct: 10 HHWHLWKKT---------YGKQYKEKNEEAVRRLIWEKNL-KFVMLHNLEHSMGMHSYDL 59
Query: 87 GLNEFSDLSTAEFQAKYLGFKLKPSYADRSVP-AMIPNITLPRAFDWREYDAVTGVKDQT 145
G+N D+++ E + ++ PS R++ PN LP + DWRE VT VK Q
Sbjct: 60 GMNHLGDMTSEEVMSLMSSLRV-PSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQG 118
Query: 146 MCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXXXXXXXS---ISNAFDTIMS 202
CG++WAFS G +E KT KLVSLS Q L+ + ++ AF I+
Sbjct: 119 SCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID 178
Query: 203 KLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDETDMAKYLVEN-GPMAVAI 261
G++ + +YPY+ D+ C+ + K + Y + D+ K V N GP++V +
Sbjct: 179 N--KGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 236
Query: 262 NAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWG 319
+A F Y +GV ++ +N++H VL+VGYG K YW++KNSWG
Sbjct: 237 DARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGDLNGK------EYWLVKNSWG 285
Query: 320 EGWGEKGYFRLYRGDGS-CGI 339
+GE+GY R+ R G+ CGI
Sbjct: 286 HNFGEEGYIRMARNKGNHCGI 306
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 13/218 (5%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CGS WAFS TG +EG KT +L+SLSEQ L+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 62 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQE 119
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D +E++ H VL+VGYG + T
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
+ + YW++KNSWGE WG GY ++ + + CGI
Sbjct: 176 ESDNNK--YWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 114/220 (51%), Gaps = 20/220 (9%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE AV VK+Q CGS WAFST +EG+ T L+SLSEQ+L+
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDET 245
++ AF I++ GG+ E+TYPYRG D C A V I+ Y +V
Sbjct: 63 HGCRGGWMNPAFQFIVNN--GGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNE 120
Query: 246 DMAKYLVENGPMAVAINAYA--LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ V N P++V ++A Q Y +G+ F N + +H++ +VGYG + K
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSGI------FTGSCNISANHALTVVGYGTENDK 174
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRG----DGSCGI 339
+WI+KNSWG+ WGE GY R R DG CGI
Sbjct: 175 ------DFWIVKNSWGKNWGESGYIRAERNIENPDGKCGI 208
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 13/218 (5%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CGS WAFS TG +EG KT +L+SLSEQ L+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 62 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQE 119
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D +E++ H VL+VGYG + T
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFEST 175
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
+ YW++KNSWGE WG GY ++ + + CGI
Sbjct: 176 ESDDNK--YWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P + D+R+ VT VK+Q CGS WAFS+ G +EG KT KL++LS Q L+
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR-DET 245
++NAF + G++ E YPY G D++C N K GY + +E
Sbjct: 62 GCGGGYMTNAFQYVQRNR--GIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 246 DMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ + + GP++VAI+A + QFY GV + D NL+H+VL VGYG+
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSD----NLNHAVLAVGYGI---- 171
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRG-DGSCGI 339
K +WIIKNSWGE WG KGY + R + +CGI
Sbjct: 172 --QKGNKHWIIKNSWGESWGNKGYILMARNKNNACGI 206
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P + D+R+ VT VK+Q CGS WAFS+ G +EG KT KL++LS Q L+
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR-DET 245
++NAF + G++ E YPY G +++C N K GY + +E
Sbjct: 62 GCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 246 DMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ + + GP++VAI+A + QFY GV + D NL+H+VL VGYG+
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD----NLNHAVLAVGYGI---- 171
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRG-DGSCGI 339
K +WIIKNSWGE WG KGY + R + +CGI
Sbjct: 172 --QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGI 206
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P + D+R+ VT VK+Q CGS WAFS+ G +EG KT KL++LS Q L+
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR-DET 245
++NAF + G++ E YPY G +++C N K GY + +E
Sbjct: 64 GCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 121
Query: 246 DMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ + + GP++VAI+A + QFY GV + D NL+H+VL VGYG+
Sbjct: 122 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD----NLNHAVLAVGYGI---- 173
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRG-DGSCGI 339
K +WIIKNSWGE WG KGY + R + +CGI
Sbjct: 174 --QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGI 208
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 121/220 (55%), Gaps = 14/220 (6%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP++ DWR+ VT VK+Q CGS WAFS TG +EG KT KLVSLSEQ L+
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 186 XXXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR- 242
++ AF + K GGL+ E++YPY D+ C+ + + + G+ V+
Sbjct: 61 GNQGCNGGFMARAFQYV--KENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPG 118
Query: 243 DETDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVD 300
E + K + GP++VA++A + QFY +G I F D ++NL H VL+VGYG +
Sbjct: 119 KEKALMKAVATVGPISVAMDAGHSSFQFYKSG----IYFEPDCSSKNLDHGVLVVGYGFE 174
Query: 301 RTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
+ YW++KNSWG WG GY ++ + + CGI
Sbjct: 175 GANSDNSK--YWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 212
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P + D+R+ VT VK+Q CGS WAFS+ G +EG KT KL++LS Q L+
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR-DET 245
++NAF + G++ E YPY G +++C N K GY + +E
Sbjct: 61 GCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 118
Query: 246 DMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ + + GP++VAI+A + QFY GV + D NL+H+VL VGYG+
Sbjct: 119 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD----NLNHAVLAVGYGI---- 170
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRG-DGSCGI 339
K +WIIKNSWGE WG KGY + R + +CGI
Sbjct: 171 --QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGI 205
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 121/220 (55%), Gaps = 14/220 (6%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP++ DWR+ VT VK+Q CGS WAFS TG +EG KT KLVSLSEQ L+
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 186 XXXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR- 242
++ AF + K GGL+ E++YPY D+ C+ + + + G+ V+
Sbjct: 61 GNQGCNGGFMARAFQYV--KENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPG 118
Query: 243 DETDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVD 300
E + K + GP++VA++A + QFY +G I F D ++NL H VL+VGYG +
Sbjct: 119 KEKALMKAVATVGPISVAMDAGHSSFQFYKSG----IYFEPDCSSKNLDHGVLVVGYGFE 174
Query: 301 RTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
+ YW++KNSWG WG GY ++ + + CGI
Sbjct: 175 GANSDNSK--YWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 212
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 112/218 (51%), Gaps = 24/218 (11%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR+ AVT VK+Q CGS WAFST +E + +T L+SLSEQ+L+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDET 245
+ A+ I+ GG++ E YPY+ CR KK V+I+GY V
Sbjct: 61 HGCKGGAFVYAYQYIIDN--GGIDTEANYPYKAVQGPCRAAKKV--VRIDGYKGVPHCNE 116
Query: 246 DMAKYLVENGPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ K V + P VAI+A + QF Y +G+ F L+H V+IVGY D
Sbjct: 117 NALKKAVASQPSVVAIDASSKQFQHYKSGI------FSGPCGTKLNHGVVIVGYWKD--- 167
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYR--GDGSCGI 339
YWI++NSWG WGE+GY R+ R G G CGI
Sbjct: 168 -------YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGI 198
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 146/310 (47%), Gaps = 32/310 (10%)
Query: 41 LFNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYGLNEFSDLSTAEFQ 100
LF ++ +HNK Y + E R IF NL+ I + ++ S GLN F+D+S EF+
Sbjct: 65 LFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDET-NKKNNSYWLGLNVFADMSNDEFK 123
Query: 101 AKYLGFKLKPSYA--DRSVPAMIPN--ITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTT 156
KY G + +Y + S ++ + + +P DWR+ AVT VK+Q CGS+WAFS
Sbjct: 124 EKYTG-SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAV 182
Query: 157 GNIEGVYAAKTKKLVSLSEQELIXXXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPY 216
IE + +T L SEQEL+ +A + G+ TYPY
Sbjct: 183 STIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQY---GIHYRNTYPY 239
Query: 217 RGDDKACRLNKKAT-QVKINGYVSVSRDETDMAKYLVENGPMAVAINAYA--LQFYVTGV 273
G + CR +K K +G V Y + N P++V + A Q Y G+
Sbjct: 240 EGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI 299
Query: 274 SHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRG 333
F GN+ + H+V VGYG + Y +I+NSWG GWGE GY R+ RG
Sbjct: 300 -----FVGPCGNK-VDHAVAAVGYGPN----------YILIRNSWGTGWGENGYIRIKRG 343
Query: 334 DGS----CGI 339
G+ CG+
Sbjct: 344 TGNSYGVCGL 353
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 114/217 (52%), Gaps = 16/217 (7%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P + D+RE VT VK+Q CGS WAFS+ G +EG KT KL++LS Q L+
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR-DET 245
++NAF + G++ E YPY G +++C N K GY + +E
Sbjct: 62 GCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 246 DMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ + + GP++VAI+A + QFY GV + D NL+H+VL VGYG
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD----NLNHAVLAVGYG----- 170
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRG-DGSCGI 339
K +WIIKNSWGE WG GY ++ R + +CGI
Sbjct: 171 -ESKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGI 206
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 114/215 (53%), Gaps = 16/215 (7%)
Query: 129 AFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXXXX 188
+ D+R+ VT VK+Q CGS WAFS+ G +EG KT KL++LS Q L+
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 61
Query: 189 XXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR-DETDM 247
++NAF + G++ E YPY G +++C N K GY + +E +
Sbjct: 62 GGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 119
Query: 248 AKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFT 305
+ + GP++VAI+A + QFY GV + D NL+H+VL VGYG+
Sbjct: 120 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD----NLNHAVLAVGYGI------ 169
Query: 306 HKAVPYWIIKNSWGEGWGEKGYFRLYRG-DGSCGI 339
K +WIIKNSWGE WG KGY + R + +CGI
Sbjct: 170 QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGI 204
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 120/218 (55%), Gaps = 16/218 (7%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CG+S+AFS TG +EG KT +L+SLSEQ L+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 62 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDVGFVDIPKQE 119
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D + +L+H++L+VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFSSDCSSSSLNHAMLVVGYG---- 171
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
F YW++KNSWGE WG GY ++ + + CGI
Sbjct: 172 -FISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 208
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 146/315 (46%), Gaps = 37/315 (11%)
Query: 45 FLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHG--------SGVYGLNEFSDLST 96
F + ++Y E R IF L + EH S G+N F+D++
Sbjct: 25 FKTTYARSYVNAKEETFRKQIFQKKLETFE-----EHNEKYRQGLVSYTLGVNLFTDMTP 79
Query: 97 AEFQAKYLGFKLKPSYADRSVP-------AMIPNITLPRAFDWREYDAVTGVKDQTMCGS 149
E +A G + +P + ++ P +FDWR+ V+ VK+Q CGS
Sbjct: 80 EEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGS 139
Query: 150 SWAFSTTGNIEGVY--AAKTKKLVSLSEQELIXXXXXXXXXXXXSISNAFDTIMSKLGGG 207
SWAFS+TG IE A S+SEQ+L+ +++AF + GG
Sbjct: 140 SWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQN--GG 197
Query: 208 LEEEKTYPYRGDDKACRLNKKATQVKINGYVSVS-RDETDMAKYLVENGPMAVAINA-YA 265
++ E YPY D C + +++GYV +S DE +A + GP+AVA +A
Sbjct: 198 IDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDP 257
Query: 266 LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEK 325
Y GV + C+ +H+VLIVGYG + + YW++KNSWG+GWG
Sbjct: 258 FGSYSGGVYY--NPTCE--TNKFTHAVLIVGYGNENGQ------DYWLVKNSWGDGWGLD 307
Query: 326 GYFRLYR-GDGSCGI 339
GYF++ R + CGI
Sbjct: 308 GYFKIARNANNHCGI 322
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 110/218 (50%), Gaps = 24/218 (11%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR AV +K+Q CGS WAFST +E + +T L+SLSEQ+L+
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDET 245
A+ I++ GG++ E YPY+ CR KK V+I+G V +
Sbjct: 61 HGCKGGYFDRAYQYIIAN--GGIDTEANYPYKAFQGPCRAAKKV--VRIDGCKGVPQCNE 116
Query: 246 DMAKYLVENGPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ K V + P VAI+A + QF Y G+ F L+H V+IVGYG D
Sbjct: 117 NALKNAVASQPSVVAIDASSKQFQHYKGGI------FTGPCGTKLNHGVVIVGYGKD--- 167
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYR--GDGSCGI 339
YWI++NSWG WGE+GY R+ R G G CGI
Sbjct: 168 -------YWIVRNSWGRHWGEQGYTRMKRVGGCGLCGI 198
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 119/222 (53%), Gaps = 16/222 (7%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P + DWR+ AVT VKDQ CG WAF TG IEG+ A T +L+S+SEQ+++
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDETD 246
+AF +++ GG+ + YPY G D C LNK +I+GY +V +
Sbjct: 62 XXXGGDADDAFRWVITN--GGIASDANYPYTGVDGTCDLNKP-IAARIDGYTNVPNSSSA 118
Query: 247 MAKYLVENGPMAVAI--NAYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKF 304
+ + + P++V I ++ + Q Y TG C + H+VLIVGYG + T
Sbjct: 119 LLDAVAKQ-PVSVNIYTSSTSFQLY-TGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTN- 175
Query: 305 THKAVPYWIIKNSWGEGWGEKGYFRLYRG----DGSCGINDY 342
YWI+KNSWG WG GY + R DG C I+ +
Sbjct: 176 ----ADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAW 213
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 108/218 (49%), Gaps = 24/218 (11%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR+ AVT VK+Q CGS WAFST +E + +T L+SLSEQEL+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDET 245
+ A+ I++ GG++ + YPY+ C+ K V I+GY V
Sbjct: 61 HGCLGGAFVFAYQYIINN--GGIDTQANYPYKAVQGPCQAASKV--VSIDGYNGVPFCNE 116
Query: 246 DMAKYLVENGPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
K V P VAI+A + QF Y +G+ F L+H V IVGY +
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGI------FSGPCGTKLNHGVTIVGYQAN--- 167
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYR--GDGSCGI 339
YWI++NSWG WGEKGY R+ R G G CGI
Sbjct: 168 -------YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGI 198
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR AV +KDQ CGS WAFST +EG+ T L+SLSEQEL+
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 186 XXXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLN-KKATQVKINGYVSVSR 242
+++ F I++ GG+ E YPY ++ C L+ ++ V I+ Y +V
Sbjct: 61 NTRGCDGGFMTDGFQFIINN--GGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPY 118
Query: 243 DETDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVD 300
+ + V P++VA+ A Y Q Y +G+ F + H+V IVGYG
Sbjct: 119 NNEWALQTAVAYQPVSVALEAAGYNFQHYSSGI------FTGPCGTAVDHAVTIVGYG-- 170
Query: 301 RTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYR---GDGSCGI 339
T + YWI+KNSWG WGE+GY R+ R G G CGI
Sbjct: 171 ----TEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR AV +KDQ CGS WAFST +EG+ T L+SLSEQEL+
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 186 XXXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLN-KKATQVKINGYVSVSR 242
+++ F I++ GG+ E YPY ++ C L+ ++ V I+ Y +V
Sbjct: 61 NTRGCDGGFMTDGFQFIINN--GGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPY 118
Query: 243 DETDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVD 300
+ + V P++VA+ A Y Q Y +G+ F + H+V IVGYG
Sbjct: 119 NNEWALQTAVAYQPVSVALEAAGYNFQHYSSGI------FTGPCGTAVDHAVTIVGYG-- 170
Query: 301 RTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYR---GDGSCGI 339
T + YWI+KNSWG WGE+GY R+ R G G CGI
Sbjct: 171 ----TEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 121/238 (50%), Gaps = 32/238 (13%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P ++DW + +T VK Q CGS WAFS TG IE +A T LVSLSEQELI
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESE 62
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGY--------V 238
+F+ ++ GG+ E YPY+ D C+ N+ +V I+ Y
Sbjct: 63 GCYNGWHYQSFEWVVKH--GGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNES 120
Query: 239 SVSRDETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNEN----LSHSVLI 294
+ S E+ + +++E P++V+I+A FY G+ DGGN + ++H VLI
Sbjct: 121 TESEAESSLQSFVLEQ-PISVSIDAKDFHFYSGGIY-------DGGNCSSPYGINHFVLI 172
Query: 295 VGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGINDYVRSALV 348
VGYG + V YWI KNSWGE WG GY R+ R G+ CG+N + ++
Sbjct: 173 VGYG------SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII 224
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 135/311 (43%), Gaps = 31/311 (9%)
Query: 41 LFNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYGLNEFSDLSTAEFQ 100
LFN ++ HNK Y + E R IF NL I + ++ S GLNEF+DLS EF
Sbjct: 21 LFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDET-NKKNNSYWLGLNEFADLSNDEFN 79
Query: 101 AKYLG----FKLKPSYADRSVPAMIPNITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTT 156
KY+G ++ SY + + I + LP DWR+ AVT V+ Q CGS WAFS
Sbjct: 80 EKYVGSLIDATIEQSYDEEFINEDI--VNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAV 137
Query: 157 GNIEGVYAAKTKKLVSLSEQELIXXXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPY 216
+EG+ +T KLV LSEQEL+ A + + G+ YPY
Sbjct: 138 ATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN---GIHLRSKYPY 194
Query: 217 RGDDKACRLNKKATQ-VKINGYVSVSRDETDMAKYLVENGPMAVAINA--YALQFYVTGV 273
+ CR + VK +G V + + P++V + + Q Y G+
Sbjct: 195 KAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGI 254
Query: 274 -SHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYR 332
P DG + + + +IKNSWG WGEKGY R+ R
Sbjct: 255 FEGPCGTKVDGAVTAVGYGKSGGKGYI-------------LIKNSWGTAWGEKGYIRIKR 301
Query: 333 GDGS----CGI 339
G+ CG+
Sbjct: 302 APGNSPGVCGL 312
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 16/217 (7%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P + D+R+ VT VK+Q CGS WAFS+ G +EG T L++L+ Q L+
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR-DET 245
++NAF + G++ E YPY G D++C N K GY + +E
Sbjct: 62 GCGGGYMTNAFQYVQRNR--GIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEA 119
Query: 246 DMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ + + GP++VAI+A + QFY GV + D L+H+VL VGYG+
Sbjct: 120 ALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDA----LNHAVLAVGYGI---- 171
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRG-DGSCGI 339
+WIIKNSWGE WG GY + R + +CGI
Sbjct: 172 --QAGNKHWIIKNSWGESWGNAGYILMARNKNNACGI 206
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 21/220 (9%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR AV +K+Q CGS WAFS +E + +T +L+SLSEQEL+
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDET 245
++NAF I++ GG++ ++ YPY +C+ + V ING+ V+R+
Sbjct: 61 HGCNGGWMNNAFQYIITN--GGIDTQQNYPYSAVQGSCKPYRLRV-VSINGFQRVTRNNE 117
Query: 246 DMAKYLVENGPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ V + P++V + A F Y +G+ F +H V+IVGYG
Sbjct: 118 SALQSAVASQPVSVTVEAAGAPFQHYSSGI------FTGPCGTAQNHGVVIVGYG----- 166
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYR----GDGSCGI 339
T YWI++NSWG+ WG +GY + R G CGI
Sbjct: 167 -TQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGI 205
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+SWAFS G +E KT KLVSLS Q L+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D+ C+ + K + Y +
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPY 119
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 174
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 175 LNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 212
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 116/225 (51%), Gaps = 20/225 (8%)
Query: 125 TLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXX 184
LP + DWRE VT VK Q CG+SWAFS G +E KT KLVSLS Q L+
Sbjct: 2 ALPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 61
Query: 185 XXXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVS 241
+ ++ AF I+ G++ + +YPY+ D+ C+ + K + Y +
Sbjct: 62 KYGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELP 119
Query: 242 RDETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYG 298
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 120 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYG 174
Query: 299 VDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 175 DLNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 213
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+SWAFS G +E KT KLVSLS Q L+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D+ C+ + K + Y +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPY 118
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 173
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 174 LNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+ WAFS G +E KT KLVSLS Q L+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D+ C+ + K + Y +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPY 118
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 173
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 174 LNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+ WAFS G +E KT KLVSLS Q L+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D+ C+ + K Y +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCRKYTELPY 118
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 173
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GEKGY R+ R G+ CGI +
Sbjct: 174 LNGK------EYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASF 211
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 123 NITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXX 182
N LP + DWRE VT VK Q CG+ WAFS G +E KT KLVSLS Q L+
Sbjct: 1 NRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCS 60
Query: 183 XXXXXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVS 239
+ ++ AF I+ G++ + +YPY+ D+ C+ + K + Y
Sbjct: 61 TEKYGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCSKYTE 118
Query: 240 VSRDETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVG 296
+ D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VG
Sbjct: 119 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVG 173
Query: 297 YGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
YG K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 174 YGDLNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 214
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+SWAFS G +E KT KLVSLS Q L+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D C+ + K + Y +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDLKCQYDSKYRAATCSKYTELPY 118
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 173
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 174 LNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+ WAFS G +E KT KLVSLS Q L+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D+ C+ + K + Y +
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPY 119
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 174
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 175 LNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 212
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+ WAFS G +E KT KLVSLS Q L+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D+ C+ + K + Y +
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPY 119
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 174
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 175 LNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 212
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+ WAFS G +E KT KLVSLS Q L+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D+ C+ + K + Y +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPY 118
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 173
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 174 LNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+ WAFS G +E KT KLVSLS Q L+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D+ C+ + Y +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPY 118
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 173
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GEKGY R+ R G+ CGI +
Sbjct: 174 LNGK------EYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASF 211
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWRE VT VK Q CG+ WAFS G +E KT KLV+LS Q L+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 186 XXXXXXS---ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+ ++ AF I+ G++ + +YPY+ D+ C+ + K + Y +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNK--GIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPY 118
Query: 243 DETDMAKYLVEN-GPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGV 299
D+ K V N GP++V ++A F Y +GV ++ +N++H VL+VGYG
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-----YYEPSCTQNVNHGVLVVGYGD 173
Query: 300 DRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS-CGINDY 342
K YW++KNSWG +GE+GY R+ R G+ CGI +
Sbjct: 174 LNGK------EYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 105/221 (47%), Gaps = 24/221 (10%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P++ DWR AVT VK+Q CGS WAFST +EG+ T L+ LSEQEL+
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACR-LNKKATQVKINGYVSV-SRDE 244
+ + + + G+ K YPY+ CR +K +VKI GY V S E
Sbjct: 62 GCKGGYQTTSLQYVANN---GVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXE 118
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
T L N P++V + A Q Y +GV F L H+V VGYG
Sbjct: 119 TSFLGALA-NQPLSVLVEAGGKPFQLYKSGV------FDGPCGTKLDHAVTAVGYGTSDG 171
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYR----GDGSCGI 339
K Y IIKNSWG WGEKGY RL R G+CG+
Sbjct: 172 KN------YIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGV 206
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR AV +K Q CG WAFS +EG+ T L+SLSEQELI
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 186 XXXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQ-VKINGYVSVSR 242
I++ F I++ GG+ E+ YPY D C ++ + + V I+ Y +V
Sbjct: 61 NTRGCNGGYITDGFQFIINN--GGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPY 118
Query: 243 DETDMAKYLVENGPMAVAINAY--ALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVD 300
+ + V P++VA++A A + Y +G+ F + H+V IVGYG
Sbjct: 119 NNEWALQTAVTYQPVSVALDAAGDAFKQYSSGI------FTGPCGTAIDHAVTIVGYG-- 170
Query: 301 RTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYR---GDGSCGI 339
T + YWI+KNSW WGE+GY R+ R G G+CGI
Sbjct: 171 ----TEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 106/220 (48%), Gaps = 26/220 (11%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P + DWRE AVT VK+Q CGS WAFST IEG+ T +L+SLSEQEL+
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRL-NKKATQVKINGYVSVSRDET 245
+ + ++ G+ E+ YPY CR +KK +V I GY V ++
Sbjct: 62 GCDGGYQTTSLQYVVDN---GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDE 118
Query: 246 DMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ N P++V ++ QFY G+ + C N H+V VGYG
Sbjct: 119 ISLIQAIANQPVSVVTDSRGRGFQFYKGGI---YEGPC---GTNTDHAVTAVGYGKT--- 169
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRGD----GSCGI 339
Y ++KNSWG WGEKGY R+ R G+CG+
Sbjct: 170 -------YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR AV +K Q CG WAFS +EG+ + L+SLSEQELI
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 186 XXXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQ-VKINGYVSVSR 242
I++ F I++ GG+ E+ YPY D C + + + V I+ Y +V
Sbjct: 61 NTRGCDGGYITDGFQFIIND--GGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPY 118
Query: 243 DETDMAKYLVENGPMAVAINAY--ALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVD 300
+ + V P++VA++A A + Y +G+ F + H+++IVGYG
Sbjct: 119 NNEWALQTAVTYQPVSVALDAAGDAFKQYASGI------FTGPCGTAVDHAIVIVGYG-- 170
Query: 301 RTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYR---GDGSCGI 339
T V YWI+KNSW WGE+GY R+ R G G+CGI
Sbjct: 171 ----TEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 114/208 (54%), Gaps = 16/208 (7%)
Query: 129 AFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXXXX 188
A+DWR + VT VKDQ CGS+WAFS+ G++E YA + KL++LSEQEL+
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 79
Query: 189 XXXSISNAFDTIMSKLGGGLEEEKTYPYRGD-DKACRLNKKATQVKINGYVSVSRDETDM 247
I+NAF+ ++ GG+ + YPY D C +++ + I Y+SV ++
Sbjct: 80 NGGLINNAFEDMIEL--GGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 137
Query: 248 AKYLVENGPMAVAIN-AYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDR--TKF 304
A + GP+++++ + FY G+ F + L+H+V++VG+G+
Sbjct: 138 ALRFL--GPISISVAVSDDFAFYKEGI------FDGECGDQLNHAVMLVGFGMKEIVNPL 189
Query: 305 THKAVP--YWIIKNSWGEGWGEKGYFRL 330
T K Y+IIKNSWG+ WGE+G+ +
Sbjct: 190 TKKGEKHYYYIIKNSWGQQWGERGFINI 217
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 113/208 (54%), Gaps = 16/208 (7%)
Query: 129 AFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXXXX 188
A+DWR + VT VKDQ CGS WAFS+ G++E YA + KL++LSEQEL+
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 80
Query: 189 XXXSISNAFDTIMSKLGGGLEEEKTYPYRGD-DKACRLNKKATQVKINGYVSVSRDETDM 247
I+NAF+ ++ GG+ + YPY D C +++ + I Y+SV ++
Sbjct: 81 NGGLINNAFEDMIEL--GGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 138
Query: 248 AKYLVENGPMAVAIN-AYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDR--TKF 304
A + GP+++++ + FY G+ F + L+H+V++VG+G+
Sbjct: 139 ALRFL--GPISISVAVSDDFAFYKEGI------FDGECGDQLNHAVMLVGFGMKEIVNPL 190
Query: 305 THKAVP--YWIIKNSWGEGWGEKGYFRL 330
T K Y+IIKNSWG+ WGE+G+ +
Sbjct: 191 TKKGEKHYYYIIKNSWGQQWGERGFINI 218
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CGS WAFS TG +EG KT +L+SLSEQ L+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 62 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 119
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D +E++ H VL+VGYG + T
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFEST 175
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
PR+ DWRE VT VK+Q CGS WAFS TG +EG KT +L+SLSEQ L+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 187 XXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ AF + GGL+ E++YPY +++C+ N K + G+V + + E
Sbjct: 62 NEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 119
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ K + GP++VAI+A + FY G I F D +E++ H VL+VGYG + T
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG----IYFEPDCSSEDMDHGVLVVGYGFEST 175
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 110/210 (52%), Gaps = 20/210 (9%)
Query: 129 AFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXXXX 188
A+DWR + VT VKDQ +CGS WAFS+ G++E YA + K L SEQEL+
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 189 XXXSISNAFDTIMSKLGGGLEEEKTYPYRGD-DKACRLNKKATQVKINGYVSVSRDETDM 247
I+NAFD ++ GGL + YPY + + C L + + I YVS+ D+
Sbjct: 83 YGGYITNAFDDMIDL--GGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKE 140
Query: 248 A-KYLVENGPMAVAINAY-ALQFYVTGVSHPIQFFCDG-GNENLSHSVLIVGYGV----D 300
A +YL GP++++I A FY G F DG +H+V++VGYG+ +
Sbjct: 141 ALRYL---GPISISIAASDDFAFYRGG-------FYDGECGAAPNHAVILVGYGMKDIYN 190
Query: 301 RTKFTHKAVPYWIIKNSWGEGWGEKGYFRL 330
+ Y+IIKNSWG WGE GY L
Sbjct: 191 EDTGRMEKFYYYIIKNSWGSDWGEGGYINL 220
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 106/218 (48%), Gaps = 15/218 (6%)
Query: 127 PRAFDWREY-DAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
P + DWR+ + V+ VK+Q CGS W FSTTG +E A T K++SL+EQ+L+
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 186 XXXXXXS--ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVS-R 242
S AF+ I + G+ E TYPY+G D C+ + +++
Sbjct: 62 NNHGCQGGLPSQAFEYI--RYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMN 119
Query: 243 DETDMAKYLVENGPMAVAINAYA-LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDR 301
DE M + + P++ A Y G+ C + ++H+VL VGYG +
Sbjct: 120 DEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTS--CHKTPDKVNHAVLAVGYGEEN 177
Query: 302 TKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGI 339
+PYWI+KNSWG WG GYF + RG CG+
Sbjct: 178 ------GIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 209
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
+P DWR+ AVT VK+Q CGS WAFS IEG+ +T L SEQEL+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKAT-QVKINGYVSVSRDE 244
+A + G+ TYPY G + CR +K K +G V
Sbjct: 61 YGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 245 TDMAKYLVENGPMAVAINAYA--LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
Y + N P++V + A Q Y G+ F GN+ + H+V VGYG +
Sbjct: 118 QGALLYSIANQPVSVVLQAAGKDFQLYRGGI-----FVGPCGNK-VDHAVAAVGYGPN-- 169
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
Y +IKNSWG GWGE GY R+ RG G+ CG+
Sbjct: 170 --------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
+P DWR+ AVT VK+Q CGS WAFS IEG+ +T L SEQEL+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKAT-QVKINGYVSVSRDE 244
+A + G+ TYPY G + CR +K K +G V
Sbjct: 61 YGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 245 TDMAKYLVENGPMAVAINAYA--LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
Y + N P++V + A Q Y G+ F GN+ + H+V VGYG +
Sbjct: 118 QGALLYSIANQPVSVVLQAAGKDFQLYRGGI-----FVGPCGNK-VDHAVAAVGYGPN-- 169
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
Y +IKNSWG GWGE GY R+ RG G+ CG+
Sbjct: 170 --------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
+P DWR+ AVT VK+Q CGS WAFS IEG+ +T L SEQEL+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKAT-QVKINGYVSVSRDE 244
+A + G+ TYPY G + CR +K K +G V
Sbjct: 61 YGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 245 TDMAKYLVENGPMAVAINAYA--LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
Y + N P++V + A Q Y G+ F GN+ + H+V VGYG +
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGI-----FVGPCGNK-VDHAVAAVGYGPN-- 169
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
Y +IKNSWG GWGE GY R+ RG G+ CG+
Sbjct: 170 --------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
+P DWR+ AVT VK+Q CGS WAFS IEG+ +T L SEQEL+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKAT-QVKINGYVSVSRDE 244
+A + G+ TYPY G + CR +K K +G V
Sbjct: 61 YGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 245 TDMAKYLVENGPMAVAINAYA--LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
Y + N P++V + A Q Y G+ F GN+ + H+V VGYG +
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGI-----FVGPCGNK-VDHAVAAVGYGPN-- 169
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
Y +IKNSWG GWGE GY R+ RG G+ CG+
Sbjct: 170 --------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
+P DWR+ AVT VK+Q CGS WAFS IEG+ +T L SEQEL+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKAT-QVKINGYVSVSRDE 244
+A + G+ TYPY G + CR +K K +G V
Sbjct: 61 YGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 245 TDMAKYLVENGPMAVAINAYA--LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
Y + N P++V + A Q Y G+ F GN+ + H+V VGYG +
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGI-----FVGPCGNK-VDHAVAAVGYGPN-- 169
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
Y +IKNSWG GWGE GY R+ RG G+ CG+
Sbjct: 170 --------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 100/220 (45%), Gaps = 26/220 (11%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXXX 186
P DWR+ AVT VK+Q CGS WAFS IEG+ +T L SEQEL+
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 187 XXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKAT-QVKINGYVSVSRDET 245
+A + G+ TYPY G + CR +K K +G V
Sbjct: 62 GCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 246 DMAKYLVENGPMAVAINAYA--LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
Y + N P++V + A Q Y G+ F GN+ + H+V VGYG +
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGI-----FVGPCGNK-VDHAVAAVGYGPN--- 169
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
Y +IKNSWG GWGE GY R+ RG G+ CG+
Sbjct: 170 -------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 117/258 (45%), Gaps = 34/258 (13%)
Query: 109 KPSYADRSVPAMIPNITLPRAFDWREY---DAVTGVKDQTMCGSSWAFSTTGNIEGVYAA 165
+P A + + LP ++DWR + V+ V++Q CGS ++F++ G +E
Sbjct: 190 RPKPAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRI 249
Query: 166 KTKKLVS--LSEQELIXXXXXXXXXXXXSISNAFDTIMS---KLGGGLEEEKTYPYRGDD 220
T + LS QE++ F +++ GL EE +PY G D
Sbjct: 250 LTNNSQTPILSPQEVVSCSQYAQ-----GCEGGFPYLIAGKYAQDFGLVEEACFPYTGTD 304
Query: 221 KACRLNKKATQVKINGYVSVSR-----DETDMAKYLVENGPMAVAINAY-------ALQF 268
C++ + + + Y V +E M LV +GPMAVA Y +
Sbjct: 305 SPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIY 364
Query: 269 YVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
+ TG+ P F E +H+VL+VGYG D + + YWI+KNSWG GWGE GYF
Sbjct: 365 HHTGLRDPFNPF-----ELTNHAVLLVGYGTD----SASGMDYWIVKNSWGTGWGENGYF 415
Query: 329 RLYRGDGSCGINDYVRSA 346
R+ RG C I +A
Sbjct: 416 RIRRGTDECAIESIAVAA 433
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 40/259 (15%)
Query: 115 RSVPAMIPN------ITLPRAFDWREY---DAVTGVKDQTMCGSSWAFSTTGNIEGVYAA 165
R PA I + ++LP ++DWR + V+ V++Q CGS ++F++ G +E
Sbjct: 189 RPKPAPITDEIQQQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRI 248
Query: 166 KTK--KLVSLSEQELIXXXXXXXXXXXXSISNAFDTIMS---KLGGGLEEEKTYPYRGDD 220
T + LS QE++ F +++ G+ EE +PY D
Sbjct: 249 LTNNSQTPILSPQEVVSCSPYAQ-----GCDGGFPYLIAGKYAQDFGVVEENCFPYTATD 303
Query: 221 KACR-----LNKKATQVKINGYVSVSRDETDMAKYLVENGPMAVA-------INAYALQF 268
C+ L +++ G +E M LV++GPMAVA ++ ++ +
Sbjct: 304 APCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIY 363
Query: 269 YVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
+ TG+S P F E +H+VL+VGYG D + YWI+KNSWG WGE GYF
Sbjct: 364 HHTGLSDPFNPF-----ELTNHAVLLVGYGKDPVT----GLDYWIVKNSWGSQWGESGYF 414
Query: 329 RLYRGDGSCGINDYVRSAL 347
R+ RG C I +A+
Sbjct: 415 RIRRGTDECAIESIAMAAI 433
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP + DWR AVT VK Q C S WAFST +EG+ KT LV LSEQEL+
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNK-KATQVKINGYVSVSRDE 244
S + + G+ YPY + CR N+ +VK NG V +
Sbjct: 61 YGCNRGYQSTSLQYVAQN---GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNN 117
Query: 245 TDMAKYLVENGPMAVAINAYALQF--YVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ + P++V + + F Y G+ F + H+V V
Sbjct: 118 EGSLLNAIAHQPVSVVVESAGRDFQNYKGGI------FEGSCGTKVDHAVTAV------G 165
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
Y +IKNSWG GWGE GY R+ R G+ CG+
Sbjct: 166 YGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGV 206
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
+P + DWR+ AVT V++Q CGS W FS+ +EG+ K+V+ L
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGI-----NKIVTGQLLSLSEQELLD 55
Query: 186 XXXXXXSISNAFD--TIMSKLGGGLEEEKTYPYRGDDKACRLNK-KATQVKINGYVSVSR 242
F + G+ + YPY G + CR ++ K +VK +G V R
Sbjct: 56 CERRSYGCRGGFPLYALQYVANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPR 115
Query: 243 DETDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVD 300
+ + P+++ + A A Q Y G+ F ++ H+V VGYG D
Sbjct: 116 NNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGI------FAGPCGTSIDHAVAAVGYGND 169
Query: 301 RTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRG----DGSCGI 339
Y +IKNSWG GWGE GY R+ RG G+CG+
Sbjct: 170 ----------YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 92/221 (41%), Gaps = 22/221 (9%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR+ AVT V+ Q CGS WAFS +EG+ +T KLV LSEQEL+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQ-VKINGYVSVSRDE 244
A + + G+ YPY+ CR + VK +G V +
Sbjct: 61 HGCKGGYPPYALEYVAKN---GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ P++V + + Q Y G+ F + H+V V
Sbjct: 118 EGNLLNAIAKQPVSVVVESKGRPFQLYKGGI------FEGPCGTKVEHAVTAV------G 165
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
Y +IKNSWG WGEKGY R+ R G+ CG+
Sbjct: 166 YGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 92/221 (41%), Gaps = 22/221 (9%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXXXXX 185
LP DWR+ AVT V+ Q CGS WAFS +EG+ +T KLV LSEQEL+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 186 XXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQ-VKINGYVSVSRDE 244
A + + G+ YPY+ CR + VK +G V +
Sbjct: 61 HGCKGGYPPYALEYVAKN---GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 245 TDMAKYLVENGPMAVAINA--YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRT 302
+ P++V + + Q Y G+ F + H+V V
Sbjct: 118 EGNLLNAIAKQPVSVVVESKGRPFQLYKGGI------FEGPCGTKVDHAVTAV------G 165
Query: 303 KFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS----CGI 339
Y +IKNSWG WGEKGY R+ R G+ CG+
Sbjct: 166 YGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 96/229 (41%), Gaps = 24/229 (10%)
Query: 121 IPNITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIX 180
I ++ +P D R VT ++ Q CGS WAFS E Y A + LSEQEL+
Sbjct: 6 INSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELV- 64
Query: 181 XXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSV 240
+I + I G+ EE++YPY ++ CR + I+ Y +
Sbjct: 65 DCASQHGCHGDTIPRGIEYIQQN---GVVEERSYPYVAREQRCR-RPNSQHYGISNYCQI 120
Query: 241 SRDETDMAKYLVENGPMAVAI-----NAYALQFY--VTGVSHPIQFFCDGGNENLSHSVL 293
+ + + A+A+ + A Q Y T + H D G + H+V
Sbjct: 121 YPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQH------DNGYQPNYHAVN 174
Query: 294 IVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDY 342
IVGYG + + YWI++NSW WG+ GY G+ I Y
Sbjct: 175 IVGYG------STQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQY 217
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 124/301 (41%), Gaps = 42/301 (13%)
Query: 42 FNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYGLNEFSDLSTAEFQA 101
F + + NK+YAT + + F +++ +Q S +N SDLS EF+
Sbjct: 8 FEEYKKAFNKSYATFEDEEAARKNFLESVKYVQ--------SNGGAINHLSDLSLDEFKN 59
Query: 102 KYL----GFK-LKPSY-ADRSVPAMIPNITLPRAFDWREYDAVTGVKDQTMCGSSWAFST 155
++L F+ LK + + A N P D R+ VT ++ Q CGS+WAFS
Sbjct: 60 RFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSG 119
Query: 156 TGNIEGVYAAKTKKLVSLSEQELIXXXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYP 215
E Y A + + L+EQEL+ +I + I G+ +E Y
Sbjct: 120 VAATESAYLAYRDQSLDLAEQELV-DCASQHGCHGDTIPRGIEYIQHN---GVVQESYYR 175
Query: 216 YRGDDKACRLNKKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINAYALQFYVTGVSH 275
Y +++CR A + I+ Y + + + + A+A+ + G+
Sbjct: 176 YVAREQSCR-RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAV--------IIGIKD 226
Query: 276 PIQFF---------CDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKG 326
F D G + H+V IVGY + V YWI++NSW WG+ G
Sbjct: 227 LDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYS------NAQGVDYWIVRNSWDTNWGDNG 280
Query: 327 Y 327
Y
Sbjct: 281 Y 281
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 105/264 (39%), Gaps = 50/264 (18%)
Query: 123 NITLPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL--SEQ 176
++ LP +FD W + + ++DQ CGS WAF I T VS+ S +
Sbjct: 61 DLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAE 120
Query: 177 ELIXXXXXXXXXXXXSISNA----FDTIMSKLGGGLEEEK--TYPY-------------- 216
+L+ A F T + GGL E PY
Sbjct: 121 DLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRP 180
Query: 217 ----RGDDKACR------LNKKATQVKINGY--VSVSRDETDMAKYLVENGPMAVAINAY 264
GD C + Q K GY SVS E D+ + +NGP+ A + Y
Sbjct: 181 PCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 240
Query: 265 A-LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWG 323
+ Y +GV + GG H++ I+G+GV+ PYW++ NSW WG
Sbjct: 241 SDFLLYKSGVYQHVTGEMMGG-----HAIRILGWGVE------NGTPYWLVANSWNTDWG 289
Query: 324 EKGYFRLYRGDGSCGINDYVRSAL 347
+ G+F++ RG CGI V + +
Sbjct: 290 DNGFFKILRGQDHCGIESEVVAGI 313
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 106/264 (40%), Gaps = 50/264 (18%)
Query: 123 NITLPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL--SEQ 176
++ LP +FD W + + ++DQ CGS+WAF I T VS+ S +
Sbjct: 4 DLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAE 63
Query: 177 ELIXXXXXXXXXXXXSISNA----FDTIMSKLGGGLEEEK--TYPY-------------- 216
+L+ A F T + GGL E PY
Sbjct: 64 DLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARP 123
Query: 217 ----RGDDKACR------LNKKATQVKINGY--VSVSRDETDMAKYLVENGPMAVAINAY 264
GD C + Q K GY SVS E D+ + +NGP+ A + Y
Sbjct: 124 PCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 183
Query: 265 A-LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWG 323
+ Y +GV + GG H++ I+G+GV+ PYW++ NSW WG
Sbjct: 184 SDFLLYKSGVYQHVTGEMMGG-----HAIRILGWGVE------NGTPYWLVANSWNTDWG 232
Query: 324 EKGYFRLYRGDGSCGINDYVRSAL 347
+ G+F++ RG CGI V + +
Sbjct: 233 DNGFFKILRGQDHCGIESEVVAGI 256
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 105/263 (39%), Gaps = 50/263 (19%)
Query: 124 ITLPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL--SEQE 177
+ LP +FD W + + ++DQ CGS WAF I T VS+ S ++
Sbjct: 1 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 60
Query: 178 LIXXXXXXXXXXXXSISNA----FDTIMSKLGGGLEEEK--TYPY--------------- 216
L+ A F T + GGL E PY
Sbjct: 61 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 120
Query: 217 ---RGD----DKACRLNKKAT--QVKINGY--VSVSRDETDMAKYLVENGPMAVAINAYA 265
GD K C T Q K GY SVS E D+ + +NGP+ A + Y+
Sbjct: 121 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 180
Query: 266 -LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGE 324
Y +GV + GG H++ I+G+GV+ PYW++ NSW WG+
Sbjct: 181 DFLLYKSGVYQHVTGEMMGG-----HAIRILGWGVE------NGTPYWLVANSWNTDWGD 229
Query: 325 KGYFRLYRGDGSCGINDYVRSAL 347
G+F++ RG CGI V + +
Sbjct: 230 NGFFKILRGQDHCGIESEVVAGI 252
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 103/261 (39%), Gaps = 50/261 (19%)
Query: 126 LPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL--SEQELI 179
LP +FD W + + ++DQ CGS WAF I T VS+ S ++L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 180 XXXXXXXXXXXXSISNA----FDTIMSKLGGGLEEEK--TYPY----------------- 216
A F T + GGL E PY
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121
Query: 217 -RGDDKACR------LNKKATQVKINGY--VSVSRDETDMAKYLVENGPMAVAINAYA-L 266
GD C + Q K GY SVS E D+ + +NGP+ A + Y+
Sbjct: 122 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 181
Query: 267 QFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKG 326
Y +GV + GG H++ I+G+GV+ PYW++ NSW WG+ G
Sbjct: 182 LLYKSGVYQHVTGEMMGG-----HAIRILGWGVE------NGTPYWLVANSWNTDWGDNG 230
Query: 327 YFRLYRGDGSCGINDYVRSAL 347
+F++ RG CGI V + +
Sbjct: 231 FFKILRGQDHCGIESEVVAGI 251
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 104/261 (39%), Gaps = 50/261 (19%)
Query: 126 LPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL--SEQELI 179
LP +FD W + + ++DQ CGS WAF I T VS+ S ++L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 180 XXXXXXXXXXXXSISNA----FDTIMSKLGGGLEEEK--TYPY----------------- 216
A F T + GGL E PY
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 217 -RGD----DKACRLNKKAT--QVKINGY--VSVSRDETDMAKYLVENGPMAVAINAYA-L 266
GD K C T Q K GY SVS E D+ + +NGP+ A + Y+
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 180
Query: 267 QFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKG 326
Y +GV + GG H++ I+G+GV+ PYW++ NSW WG+ G
Sbjct: 181 LLYKSGVYQHVTGEMMGG-----HAIRILGWGVE------NGTPYWLVANSWNTDWGDNG 229
Query: 327 YFRLYRGDGSCGINDYVRSAL 347
+F++ RG CGI V + +
Sbjct: 230 FFKILRGQDHCGIESEVVAGI 250
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 107/264 (40%), Gaps = 50/264 (18%)
Query: 124 ITLPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKT--KKLVSLSEQE 177
+ +P +FD W ++ ++DQ+ CGS WAF + ++ K+ V LS +
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 178 LIXXXXXXXXXXXXSI-SNAFDTIMSK--LGGGLEEE----KTYPY-------RGDDKAC 223
L+ I A+D + + + G +E + YP+ +G C
Sbjct: 61 LLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPC 120
Query: 224 ----------------RLNKKATQVKINGYVS--VSRDETDMAKYLVENGPMAVAINAYA 265
+ TQ K G S V DE + K +++ GP+ Y
Sbjct: 121 GSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE 180
Query: 266 -LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGE 324
Y +G+ I GG H++ I+G+GV+ PYW+I NSW E WGE
Sbjct: 181 DFLNYKSGIYKHITGETLGG-----HAIRIIGWGVENK------APYWLIANSWNEDWGE 229
Query: 325 KGYFRLYRGDGSCGINDYVRSALV 348
GYFR+ RG C I V + +
Sbjct: 230 NGYFRIVRGRDECSIESEVTAGRI 253
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 87/214 (40%), Gaps = 28/214 (13%)
Query: 123 NITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXX 182
N P D R+ VT ++ Q CGS WAFS E Y A ++ + L+EQEL+
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELV-DC 65
Query: 183 XXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+I + I G+ +E Y Y +++CR A + I+ Y +
Sbjct: 66 ASQHGCHGDTIPRGIEYIQHN---GVVQESYYRYVAREQSCR-RPNAQRFGISNYCQIYP 121
Query: 243 DETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFF---------CDGGNENLSHSVL 293
+ + + A+A+ + G+ F D G + H+V
Sbjct: 122 PNANKIREALAQTHSAIAV--------IIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVN 173
Query: 294 IVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGY 327
IVGY + V YWI++NSW WG+ GY
Sbjct: 174 IVGYS------NAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 87/214 (40%), Gaps = 28/214 (13%)
Query: 123 NITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXX 182
N P D R+ VT ++ Q CGS WAFS E Y A ++ + L+EQEL+
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELV-DC 65
Query: 183 XXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+I + I G+ +E Y Y +++CR A + I+ Y +
Sbjct: 66 ASQHGCHGDTIPRGIEYIQHN---GVVQESYYRYVAREQSCR-RPNAQRFGISNYCQIYP 121
Query: 243 DETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFF---------CDGGNENLSHSVL 293
+ + + A+A+ + G+ F D G + H+V
Sbjct: 122 PNANKIREALAQTHSAIAV--------IIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVN 173
Query: 294 IVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGY 327
IVGY + V YWI++NSW WG+ GY
Sbjct: 174 IVGYS------NAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 28/214 (13%)
Query: 123 NITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIXXX 182
N P D R+ VT ++ Q CGS WAFS E Y A + + L+EQEL+
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELV-DC 65
Query: 183 XXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSR 242
+I + I G+ +E Y Y +++CR A + I+ Y +
Sbjct: 66 ASQHGCHGDTIPRGIEYIQHN---GVVQESYYRYVAREQSCR-RPNAQRFGISNYCQIYP 121
Query: 243 DETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFF---------CDGGNENLSHSVL 293
+ + + A+A+ + G+ F D G + H+V
Sbjct: 122 PNVNKIREALAQTHSAIAV--------IIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVN 173
Query: 294 IVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGY 327
IVGY + V YWI++NSW WG+ GY
Sbjct: 174 IVGYS------NAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 50/264 (18%)
Query: 123 NITLPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL--SEQ 176
+I LP +FD W + ++DQ CGSSWAF + T V++ S +
Sbjct: 60 DINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAE 119
Query: 177 ELIXXXXXXXXXXXX----SISNAFDTIMSKLGGGLEEEK--TYPY-------------- 216
+L+ S + F T + GG+ PY
Sbjct: 120 DLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARP 179
Query: 217 ----RGDDKACRLNKKA------TQVKINGYVS--VSRDETDMAKYLVENGPMAVAINAY 264
GD C +A + K GY S VS E ++ + +NGP+ A +
Sbjct: 180 PCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 239
Query: 265 A-LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWG 323
+ Y +GV + + G+ H++ I+G+G++ VPYW++ NSW WG
Sbjct: 240 SDFLTYKSGV-----YKHEAGDVMGGHAIRILGWGIE------NGVPYWLVANSWNADWG 288
Query: 324 EKGYFRLYRGDGSCGINDYVRSAL 347
+ G+F++ RG+ CGI + + +
Sbjct: 289 DNGFFKILRGENHCGIESEIVAGI 312
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 50/264 (18%)
Query: 123 NITLPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL--SEQ 176
+I LP +FD W + ++DQ CGS WAF + T V++ S +
Sbjct: 4 DINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAE 63
Query: 177 ELIXXXXXXXXXXXX----SISNAFDTIMSKLGGGLEEEK--TYPY-------------- 216
+L+ S + F T + GG+ PY
Sbjct: 64 DLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARP 123
Query: 217 ----RGDDKACRLNKKA------TQVKINGYVS--VSRDETDMAKYLVENGPMAVAINAY 264
GD C +A + K GY S VS E ++ + +NGP+ A +
Sbjct: 124 PCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 183
Query: 265 A-LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWG 323
+ Y +GV + + G+ H++ I+G+G++ VPYW++ NSW WG
Sbjct: 184 SDFLTYKSGV-----YKHEAGDVMGGHAIRILGWGIE------NGVPYWLVANSWNADWG 232
Query: 324 EKGYFRLYRGDGSCGINDYVRSAL 347
+ G+F++ RG+ CGI + + +
Sbjct: 233 DNGFFKILRGENHCGIESEIVAGI 256
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 67.8 bits (164), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 286 ENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYVRS 345
E +H+VL+VGYG D + + YWI+KNSWG GWGE GYFR+ RG C I +
Sbjct: 7 ELTNHAVLLVGYGTD----SASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVA 62
Query: 346 A 346
A
Sbjct: 63 A 63
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 89/245 (36%), Gaps = 40/245 (16%)
Query: 126 LPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTK-KLVSLSEQELIX 180
LP +FD W + + DQ+ CGS WA + + + + V +S +L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 181 XXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRG-------------------DDK 221
+ S G + + YP+ D
Sbjct: 154 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 213
Query: 222 ACRLNKKATQVKINGYVSVS----RDETDMAKYLVENGPMAVAINAYA-LQFYVTGVSHP 276
C + + Y S + + E D + L GP VA + Y Y +GV H
Sbjct: 214 KCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHH 273
Query: 277 IQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS 336
+ GG H+V +VG+G T VPYW I NSW WG GYF + RG
Sbjct: 274 VSGQYLGG-----HAVRLVGWG------TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE 322
Query: 337 CGIND 341
CGI D
Sbjct: 323 CGIED 327
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 89/245 (36%), Gaps = 40/245 (16%)
Query: 126 LPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTK-KLVSLSEQELIX 180
LP +FD W + + DQ+ CGS WA + + + + V +S +L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 181 XXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRG-------------------DDK 221
+ S G + + YP+ D
Sbjct: 131 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 190
Query: 222 ACRLNKKATQVKINGYVSVS----RDETDMAKYLVENGPMAVAINAYA-LQFYVTGVSHP 276
C + + Y S + + E D + L GP VA + Y Y +GV H
Sbjct: 191 KCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHH 250
Query: 277 IQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS 336
+ GG H+V +VG+G T VPYW I NSW WG GYF + RG
Sbjct: 251 VSGQYLGG-----HAVRLVGWG------TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE 299
Query: 337 CGIND 341
CGI D
Sbjct: 300 CGIED 304
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 99/262 (37%), Gaps = 52/262 (19%)
Query: 126 LPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL---SEQEL 178
LP +FD W + ++DQ CGS WAF I + V++ +E L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 179 IXXXXXXXXXXXXSISNAFDTIMSKLG---GGLEEEK--TYPY----------------- 216
+ +K G GGL PY
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 217 -RGDDKACRLN---------KKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINAYA- 265
GD C K+ + Y SV+ +E ++ + +NGP+ A + Y+
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 266 LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEK 325
Y +GV + GG H++ I+G+GV+ PYW++ NSW WG+
Sbjct: 180 FLLYKSGVYQHVSGEIMGG-----HAIRILGWGVE------NGTPYWLVGNSWNTDWGDN 228
Query: 326 GYFRLYRGDGSCGINDYVRSAL 347
G+F++ RG CGI + + +
Sbjct: 229 GFFKILRGQDHCGIESEIVAGM 250
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 52/262 (19%)
Query: 126 LPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL--SEQELI 179
LP +FD W + ++DQ CGS WAF I + V++ S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 180 XXXXXXXXXXXXSISNA----FDTIMSKLGGGLEEEK--TYPY----------------- 216
+ F T + GGL PY
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 217 -RGDDKACRLN---------KKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINAYA- 265
GD C K+ + Y SV+ +E ++ + +NGP+ A + Y+
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 266 LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEK 325
Y +GV + GG H++ I+G+GV+ PYW++ NSW WG+
Sbjct: 180 FLLYKSGVYQHVSGEIMGG-----HAIRILGWGVE------NGTPYWLVANSWNTDWGDN 228
Query: 326 GYFRLYRGDGSCGINDYVRSAL 347
G+F++ RG CGI + + +
Sbjct: 229 GFFKILRGQDHCGIESEIVAGM 250
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 50/261 (19%)
Query: 126 LPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSL--SEQELI 179
LP +FD W + ++DQ CGS WAF + T V++ S ++L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 180 XXXXXXXXXXXX----SISNAFDTIMSKLGGGLEEEK--TYPY----------------- 216
S + F T + GG+ PY
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 217 -RGDDKACRLNKKA------TQVKINGYVS--VSRDETDMAKYLVENGPMAVAINAYA-L 266
GD C +A + K GY S VS E ++ + +NGP+ A ++
Sbjct: 121 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 180
Query: 267 QFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKG 326
Y +GV + + G+ H++ I+G+G++ VPYW++ NSW WG+ G
Sbjct: 181 LTYKSGV-----YKHEAGDVMGGHAIRILGWGIE------NGVPYWLVANSWNADWGDNG 229
Query: 327 YFRLYRGDGSCGINDYVRSAL 347
+F++ RG+ CGI + + +
Sbjct: 230 FFKILRGENHCGIESEIVAGI 250
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 89/245 (36%), Gaps = 40/245 (16%)
Query: 126 LPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTK-KLVSLSEQELIX 180
LP +FD W + + DQ+ CGS WA + + + + V +S +L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 181 XXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRG-------------------DDK 221
+ S G + + YP+ D
Sbjct: 132 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 191
Query: 222 ACRLNKKATQVKINGYVSVS----RDETDMAKYLVENGPMAVAINAYA-LQFYVTGVSHP 276
C + + Y S + + E D + L GP VA + Y Y +GV H
Sbjct: 192 KCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHH 251
Query: 277 IQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS 336
+ GG H+V +VG+G T VPYW I NSW WG GYF + RG
Sbjct: 252 VSGQYLGG-----HAVRLVGWG------TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE 300
Query: 337 CGIND 341
CGI D
Sbjct: 301 CGIED 305
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 41/230 (17%)
Query: 126 LPRAFDWREYDAV---TGVKDQTM---CGSSWAFSTTGNIEGVYAAKTKKLVS---LSEQ 176
LP+++DWR D V + ++Q + CGS WA ++T + K K LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 177 ELIXXXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDD---------------K 221
+I +S +D G+ +E Y+ D K
Sbjct: 61 NVIDCGNAGSCEGGNDLS-VWDYAHQH---GIPDETCNNYQAKDQECDKFNQCGTCNEFK 116
Query: 222 ACRLNKKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINAYA-LQFYVTGVSHPIQFF 280
C + T ++ Y S+S E MA+ + NGP++ I A L Y G+ Q
Sbjct: 117 ECHAIRNYTLWRVGDYGSLSGREKMMAE-IYANGPISCGIMATERLANYTGGIYAEYQ-- 173
Query: 281 CDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRL 330
++H V + G+G+ YWI++NSWGE WGE+G+ R+
Sbjct: 174 ---DTTYINHVVSVAGWGIS------DGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 41/230 (17%)
Query: 126 LPRAFDWREYDAV---TGVKDQTM---CGSSWAFSTTGNIEGVYAAKTKKLVS---LSEQ 176
LP+++DWR D V + ++Q + CGS WA ++T + K K LS Q
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 95
Query: 177 ELIXXXXXXXXXXXXSISNAFDTIMSKLGGGLEEEKTYPYRGDD---------------K 221
+I +S +D G+ +E Y+ D K
Sbjct: 96 NVIDCGNAGSCEGGNDLS-VWDYAHQH---GIPDETCNNYQAKDQECDKFNQCGTCNEFK 151
Query: 222 ACRLNKKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINAYA-LQFYVTGVSHPIQFF 280
C + T ++ Y S+S E MA+ + NGP++ I A L Y G+ Q
Sbjct: 152 ECHAIRNYTLWRVGDYGSLSGREKMMAE-IYANGPISCGIMATERLANYTGGIYAEYQ-- 208
Query: 281 CDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRL 330
++H V + G+G+ YWI++NSWGE WGE+G+ R+
Sbjct: 209 ---DTTYINHVVSVAGWGIS------DGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 239 SVSRDETDMAKYLVENGPMAVAINAYA-LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGY 297
SVS E D+ + +NGP+ A + Y+ Y +GV + GG H++ I+G+
Sbjct: 103 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGG-----HAIRILGW 157
Query: 298 GVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYVRSAL 347
GV+ PYW++ NSW WG+ G+F++ RG CGI V + +
Sbjct: 158 GVEN------GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI 201
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
Query: 239 SVSRDETDMAKYLVENGPMAVAINAYA-LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGY 297
SV+ +E ++ + +NGP+ A + Y+ Y +GV + GG H++ I+G+
Sbjct: 104 SVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGG-----HAIRILGW 158
Query: 298 GVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYVRSAL 347
GV+ PYW++ NSW WG+ G+F++ RG CGI + + +
Sbjct: 159 GVEN------GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGM 202
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 126 LPRAFDWREY---DAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTK--KLVSLSEQELIX 180
LP ++DWR + V+ V++Q CGS ++F++ G +E T + LS QE++
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 181 XXXXXXXXXXXSISNAFDTIMS---KLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGY 237
F +++ GL EE +PY G D C++ + + + Y
Sbjct: 61 CSQYAQ-----GCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEY 115
Query: 238 VSV-----SRDETDMAKYLVENGPMAVAINAY 264
V +E M LV +GPMAVA Y
Sbjct: 116 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVY 147
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 277 IQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRL-YRGDG 335
+Q C G++ H+V IVGYG + + YWI++NSWG WG++GYF++ G
Sbjct: 188 VQNLC--GDDTADHAVNIVGYG-NYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPT 244
Query: 336 SCGINDYVRSALV 348
C N ++ S ++
Sbjct: 245 HCHFN-FIHSVVI 256
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 284 GNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRL-YRGDGSCGINDY 342
G++ H+V IVGYG + + YWI++NSWG WG++GYF++ G C N +
Sbjct: 194 GDDTADHAVNIVGYG-NYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFN-F 251
Query: 343 VRSALV 348
+ S ++
Sbjct: 252 IHSVVI 257
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 227 KKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNE 286
K A KI Y V++D + L P + Y +V S P++ N+
Sbjct: 174 KDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVY--NSWVGNNSLPVRIPLPTKND 231
Query: 287 NLS--HSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
L H+VL VGY + F I+NSWG GE GYF
Sbjct: 232 TLEGGHAVLCVGYDDEIRHFR--------IRNSWGNNVGEDGYF 267
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 42 FNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYGLNEFSDLSTAEFQA 101
F+ F + K+YAT E R IF NL I + + S +N F DLS EF+
Sbjct: 25 FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHT-HNQQGYSYSLKMNHFGDLSRDEFRR 83
Query: 102 KYLGFK 107
KYLGFK
Sbjct: 84 KYLGFK 89
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 311 YWIIKNSWGEGWGEKGYFRLYRGDGS-CGI 339
YW++KNSWGE WG GY ++ + + CGI
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 33
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 126 LPRAFD----WREYDAVTGVKDQTMCGSSWAFSTTGNIEGV 162
LP +FD W + + ++DQ CGS WAF G +E +
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAF---GAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 126 LPRAFDWREY----DAVTGVKDQTMCGSSWAFSTTGNIEGV 162
LP +FD RE + ++DQ CGS WAF G +E +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAF---GAVEAI 38
>pdb|2HQU|A Chain A, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|2HQU|B Chain B, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|2HQU|C Chain C, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|3EHW|A Chain A, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|B Chain B, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|C Chain C, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|X Chain X, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|Y Chain Y, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|Z Chain Z, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3ARA|A Chain A, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARA|B Chain B, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARA|C Chain C, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARN|A Chain A, Human Dutpase In Complex With Novel Uracil Derivative
pdb|3ARN|B Chain B, Human Dutpase In Complex With Novel Uracil Derivative
pdb|3ARN|C Chain C, Human Dutpase In Complex With Novel Uracil Derivative
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 41 LFNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYG 87
LFN+ E+ + IF + ++Q L DTE GSG +G
Sbjct: 113 LFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFG 159
>pdb|1Q5H|A Chain A, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5H|B Chain B, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5H|C Chain C, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5U|X Chain X, Human Dutp Pyrophosphatase
pdb|1Q5U|Y Chain Y, Human Dutp Pyrophosphatase
pdb|1Q5U|Z Chain Z, Human Dutp Pyrophosphatase
Length = 147
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 41 LFNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYG 87
LFN+ E+ + IF + ++Q L DTE GSG +G
Sbjct: 96 LFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFG 142
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 312 WIIKNSWGEGWGEKGYF 328
W ++NSWGE G KGY
Sbjct: 391 WRVENSWGEDHGHKGYL 407
>pdb|1A6R|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 288 LSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
++H++LI G VD T K + ++NSWG+ G+ G +
Sbjct: 384 MTHAMLITGCHVDET---SKLPLRYRVENSWGKDSGKDGLY 421
>pdb|3GCB|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 288 LSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
++H++LI G VD T K + ++NSWG+ G+ G +
Sbjct: 384 MTHAMLITGCHVDET---SKLPLRYRVENSWGKDSGKDGLY 421
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 312 WIIKNSWGEGWGEKGYF 328
W ++NSWGE G KGY
Sbjct: 391 WRVENSWGEDHGHKGYL 407
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 288 LSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
++H++LI G VD T K + ++NSWG+ G+ G +
Sbjct: 367 MTHAMLITGCHVDET---SKLPLRYRVENSWGKDSGKDGLY 404
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 288 LSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
++H++LI G VD T K + ++NSWG+ G+ G +
Sbjct: 371 MTHAMLITGCHVDET---SKLPLRYRVENSWGKDSGKDGLY 408
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,383,161
Number of Sequences: 62578
Number of extensions: 443651
Number of successful extensions: 1745
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1343
Number of HSP's gapped (non-prelim): 144
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)