RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2558
(348 letters)
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 282 bits (725), Expect = 1e-95
Identities = 109/222 (49%), Positives = 130/222 (58%), Gaps = 17/222 (7%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIDCDQED 185
LP +FDWRE AVT VKDQ CGS WAFS G +EG Y KT KLVSLSEQ+L+DCD +
Sbjct: 1 LPESFDWREKGAVTPVKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDCDTGN 60
Query: 186 DGCEGGSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKK-ATQVKINGYVSVS-RD 243
+GC GG NAF+ I GG+ E YPY D C+ K + KI GY V D
Sbjct: 61 NGCNGGLPDNAFEYIKKN--GGIVTESDYPYTAHDGTCKFKKSNSKYAKIKGYGDVPYND 118
Query: 244 ETDMAKYLVENGPMAVAINAYA--LQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDR 301
E + L +NGP++VAI+AY Q Y +GV + C G L H+VLIVGYG +
Sbjct: 119 EEALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTE--CSG---ELDHAVLIVGYGTE- 172
Query: 302 TKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYV 343
VPYWI+KNSWG WGE GYFR+ RG CGI
Sbjct: 173 -----NGVPYWIVKNSWGTDWGENGYFRIARGVNECGIASEA 209
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 279 bits (716), Expect = 2e-94
Identities = 106/220 (48%), Positives = 130/220 (59%), Gaps = 16/220 (7%)
Query: 127 PRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIDCDQE-D 185
P + DWRE AVT VKDQ CGS WAFST G +EG YA KT KLVSLSEQ+L+DC +
Sbjct: 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGN 60
Query: 186 DGCEGGSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVS-RDE 244
+GC GG+ NAF+ + + GGL E YPY G D C+ N KI GY +V DE
Sbjct: 61 NGCNGGNPDNAFEYVKN---GGLASESDYPYTGKDGTCKYNSSKVGAKITGYSNVPPGDE 117
Query: 245 TDMAKYLVENGPMAVAINAY-ALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTK 303
+ L GP++VAI+A + QFY G+ N NL+H+VL+VGYG +
Sbjct: 118 EALKAALANYGPVSVAIDASSSFQFYKGGIYSG----PCCSNTNLNHAVLLVGYGTE--- 170
Query: 304 FTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGINDYV 343
V YWI+KNSWG WGEKGY R+ RG CGI Y
Sbjct: 171 ---NGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYA 207
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 234 bits (599), Expect = 5e-75
Identities = 130/321 (40%), Positives = 175/321 (54%), Gaps = 26/321 (8%)
Query: 39 TALFNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYGLNEFSDLSTAE 98
ALF F + + Y TL E RL F NL ++ Q + +G+ +F DLS AE
Sbjct: 35 AALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQ-ARNPHARFGITKFFDLSEAE 93
Query: 99 FQAKYLG----FKLKPSYAD---RSVPAMIPNITLPRAFDWREYDAVTGVKDQTMCGSSW 151
F A+YL F +A R A + +P A DWRE AVT VK+Q CGS W
Sbjct: 94 FAARYLNGAAYFAAAKQHAGQHYRKARADLS--AVPDAVDWREKGAVTPVKNQGACGSCW 151
Query: 152 AFSTTGNIEGVYAAKTKKLVSLSEQELIDCDQEDDGCEGGSISNAFDTIMSKLGGGLEEE 211
AFS GNIE +A KLV LSEQ+L+ CD D+GC GG + AF+ ++ + G + E
Sbjct: 152 AFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTE 211
Query: 212 KTYPY---RGDDKACRLNKK-ATQVKINGYVSVSRDETDMAKYLVENGPMAVAINAYALQ 267
K+YPY GD C + + A +I+GYVS+ E MA +L +NGP+++A++A +
Sbjct: 212 KSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFM 271
Query: 268 FYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGY 327
Y +GV C G E L+H VL+VGY + VPYW+IKNSWGE WGEKGY
Sbjct: 272 SYHSGVLTS----CIG--EQLNHGVLLVGYNMT------GEVPYWVIKNSWGEDWGEKGY 319
Query: 328 FRLYRGDGSCGINDYVRSALV 348
R+ G +C + Y S V
Sbjct: 320 VRVTMGVNACLLTGYPVSVHV 340
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 217 bits (555), Expect = 1e-70
Identities = 95/220 (43%), Positives = 112/220 (50%), Gaps = 51/220 (23%)
Query: 126 LPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIDCDQED 185
LP +FDWR+ AVT VKDQ CGS WAFS TG +EG Y KT KLVSLSEQ+L+DC
Sbjct: 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSGGG 60
Query: 186 D-GCEGGSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDE 244
+ GC GG NAF+ I GGLE E YPY G
Sbjct: 61 NCGCNGGLPDNAFEYIKKN--GGLETESCYPYTG-------------------------- 92
Query: 245 TDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKF 304
+VAI+A QFY +G+ C G+ L H+VLIVGYG +
Sbjct: 93 -------------SVAIDASDFQFYKSGIYDHPG--C--GSGTLDHAVLIVGYGTEVE-- 133
Query: 305 THKAVPYWIIKNSWGEGWGEKGYFRLYRG-DGSCGINDYV 343
YWI+KNSWG WGE GYFR+ RG + CGI V
Sbjct: 134 --NGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV 171
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 204 bits (521), Expect = 1e-61
Identities = 121/319 (37%), Positives = 168/319 (52%), Gaps = 39/319 (12%)
Query: 36 VKHTALFNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYGLNEFSDLS 95
+++ F F+++H K Y T E R F NL KI + E+ G+N F DLS
Sbjct: 163 LENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLS 222
Query: 96 TAEFQAKYL---GFKLKP---------SYAD---RSVPAMIPNITLPR-AFDWREYDAVT 139
EF+ KYL F K +Y D + P + T +DWR ++ VT
Sbjct: 223 FEEFKKKYLTLKSFDFKSNGKKSPRVINYDDVIKKYKPK---DATFDHAKYDWRLHNGVT 279
Query: 140 GVKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIDCDQEDDGCEGGSISNAFDT 199
VKDQ CGS WAFST G +E YA + +LVSLSEQEL+DC +++GC GG I NAF+
Sbjct: 280 PVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFKNNGCYGGLIPNAFED 339
Query: 200 IMSKLGGGLEEEKTYPYRGD-DKACRLNKKATQVKINGYVSVSRDETDMA-KYLVENGPM 257
++ GGL E YPY D + C +++ + KI YVS+ D+ A ++L GP+
Sbjct: 340 MIEL--GGLCSEDDYPYVSDTPELCNIDRCKEKYKIKSYVSIPEDKFKEAIRFL---GPI 394
Query: 258 AVAINAY-ALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDR-----TKFTHKAVPY 311
+V+I FY G F E +H+V++VGYG++ TK K Y
Sbjct: 395 SVSIAVSDDFAFYKGG------IFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRY-Y 447
Query: 312 WIIKNSWGEGWGEKGYFRL 330
+IIKNSWGE WGEKG+ R+
Sbjct: 448 YIIKNSWGESWGEKGFIRI 466
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 183 bits (466), Expect = 5e-54
Identities = 111/334 (33%), Positives = 153/334 (45%), Gaps = 53/334 (15%)
Query: 42 FNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVY--GLNEFSDLSTAEF 99
F F +++N+ +AT E +R F N +++ + G Y +N+FSDL+ EF
Sbjct: 126 FEEFNKKYNRKHATHAERLNRFLTFRNNYLEVK----SHKGDEPYSKEINKFSDLTEEEF 181
Query: 100 QAKYLGFKLKPSYADRSV-----------PAMIPNITLPRAF---------------DWR 133
+ + K+ P S P + N+ + DWR
Sbjct: 182 RKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWR 241
Query: 134 EYDAVTGVKDQ-TMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIDCDQEDDGCEGGS 192
DAVT VKDQ CGS WAFS+ G++E +Y K V LSEQEL++CD + GC GG
Sbjct: 242 RADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTKSQGCSGGY 301
Query: 193 ISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQVKINGYVSVSRDETDMAKYLV 252
A + + +K GL PY D C +V I+ Y V++ + + K LV
Sbjct: 302 PDTALEYVKNK---GLSSSSDVPYLAKDGKCV-VSSTKKVYIDSY-LVAKGKDVLNKSLV 356
Query: 253 ENGPMAVAINA-YALQFYVTGVSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPY 311
P V I L Y +GV + ++L+H+VL+VG G D T K Y
Sbjct: 357 -ISPTVVYIAVSRELLKYKSGV------YNGECGKSLNHAVLLVGEGYDEK--TKKR--Y 405
Query: 312 WIIKNSWGEGWGEKGYFRLYR---GDGSCGINDY 342
WIIKNSWG WGE GY RL R G CGI
Sbjct: 406 WIIKNSWGTDWGENGYMRLERTNEGTDKCGILTV 439
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 143 bits (363), Expect = 4e-41
Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 126 LPRAFDWRE----YDAVTGVKDQTMCGSSWAFSTTGNIEG---VYAAKTKKLVS---LSE 175
LP++FDW + ++ V+ V++Q CGS +AF++ +E + + KT L LS
Sbjct: 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSP 60
Query: 176 QELIDCDQEDDGCEGGSISNAFDTIMSKLGG--GLEEEKTYPYRGDDKA-CRLNKKATQV 232
Q ++ C Q GC+GG F ++ K G+ E +PY DD C+ + +
Sbjct: 61 QHVLSCSQYSQGCDGG-----FPFLVGKFAEDFGIVTEDYFPYTADDDRPCKASPSECRR 115
Query: 233 -------KINGYVSVSRDETDMAKYLVENGPMAVAINAYA-LQFYVTGVSHPIQF--FCD 282
+ G + +E +M + NGP+ VA Y+ FY GV H D
Sbjct: 116 YYFSDYNYVGGCYGCT-NEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSD 174
Query: 283 GGNENL------SHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGS 336
G N+N +H+VL+VG+G D K YWI+KNSWG WGEKGYF++ RG
Sbjct: 175 GDNDNFNPFELTNHAVLLVGWGEDEIK----GEKYWIVKNSWGSSWGEKGYFKIRRGTNE 230
Query: 337 CGINDYV 343
CGI
Sbjct: 231 CGIESQA 237
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 131 bits (332), Expect = 1e-36
Identities = 78/254 (30%), Positives = 107/254 (42%), Gaps = 52/254 (20%)
Query: 127 PRAFDWREY----DAVTGVKDQTMCGSSWAFSTTGN------IEGVYAAKTKKLVSLSEQ 176
P +FD RE ++ ++DQ CGS WAFS I+ K+ V LS Q
Sbjct: 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQS----NGKENVLLSAQ 56
Query: 177 ELIDCDQE-DDGCEGGSISNAFDTIMSKLGGGLEEEKTYPY------------------R 217
+L+ C DGC GG A+ + + G+ PY
Sbjct: 57 DLLSCCSGCGDGCNGGYPDAAWKYLTTT---GVVTGGCQPYTIPPCGHHPEGPPPCCGTP 113
Query: 218 GDDKACR--LNKKATQVKINGYV--SVSRDETDMAKYLVENGPMAVAINAYA-LQFYVTG 272
C+ K + K G SV DETD+ K ++ NGP+ A Y +Y +G
Sbjct: 114 YCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSG 173
Query: 273 VSHPIQFFCDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYR 332
V G + H+V I+G+GV+ VPYW+ NSWG WGE GYFR+ R
Sbjct: 174 VYQHT-----SGKQLGGHAVKIIGWGVENG------VPYWLAANSWGTDWGENGYFRILR 222
Query: 333 GDGSCGINDYVRSA 346
G CGI V +
Sbjct: 223 GSNECGIESEVVAG 236
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 126 bits (319), Expect = 1e-34
Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 40/233 (17%)
Query: 126 LPRAFDWREYDAV---TGVKDQ---TMCGSSWAFSTTGNIEGVYAAKTK---KLVSLSEQ 176
LP+++DWR + V + ++Q CGS WA +T + K V LS Q
Sbjct: 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQ 60
Query: 177 ELIDCDQEDDGCEGGSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLN---------- 226
+IDC C GG ++ G+ +E PY+ D C
Sbjct: 61 VVIDCAG-GGSCHGGDPGGVYEYAHKH---GIPDETCNPYQAKDGECNPFNRCGTCNPFG 116
Query: 227 -----KKATQVKINGYVSVSRDETDMAKYLVENGPMAVAINAY-ALQFYVTGVSHPIQFF 280
K T ++ Y SVS M + GP++ I A AL+ Y GV
Sbjct: 117 ECFAIKNYTLYFVSDYGSVS-GRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYV-- 173
Query: 281 CDGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRG 333
+ ++H + + G+GVD V YWI++NSWGE WGE+G+FR+
Sbjct: 174 ---QDPLINHIISVAGWGVD-----ENGVEYWIVRNSWGEPWGERGWFRIVTS 218
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 126 bits (317), Expect = 1e-34
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 21/219 (9%)
Query: 130 FDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVYAAKTK--KLVSLSEQELIDCD----- 182
D R +T VK+Q GS WAF++ +E Y K + V LS Q L C
Sbjct: 2 VDLR-PLRLTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECL 60
Query: 183 QEDDGCEGGSISNAFDTIMSKLGGGLEEEKTYPY----RGDDKACRLNKKATQVKINGYV 238
+ C+GG +A +++ G + E+ YPY G++ A +VK+ Y
Sbjct: 61 GINGSCDGGGPLSALLKLVALKG--IPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYR 118
Query: 239 SV-SRDETDMAKYLVENGPMAVAINAYALQFYVTGVS-HPIQFFCDGGNENL-SHSVLIV 295
V + D+ + L + GP+ + Y+ + + + + +L H+V+IV
Sbjct: 119 RVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIV 178
Query: 296 GYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGD 334
GY + + +I+KNSWG WG+ GY R+ D
Sbjct: 179 GYDDNYVEGK----GAFIVKNSWGTDWGDNGYGRISYED 213
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 80.7 bits (199), Expect = 6e-17
Identities = 63/222 (28%), Positives = 89/222 (40%), Gaps = 27/222 (12%)
Query: 124 ITLPRAFDWREYDAVTGVKDQTMCGSSWAFSTTGNIEGVY---------AAKTKKLVSLS 174
+LP FD R+ V+ VKDQ GS WAF+TT ++E K L+ +
Sbjct: 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPESAWDFSENNMKNLLGVP 156
Query: 175 EQELIDCDQEDDGCEGGSISNAFDTIMSKLGGGLEEEKTYPYRGDDKACRLNKKATQ-VK 233
++ D D G +S A+ T S G E + PY + N T+ V+
Sbjct: 157 YEKGFDYTSNDGG--NADMSAAYLTEWS--GPVYETDD--PYSENSYFSPTNLPVTKHVQ 210
Query: 234 INGY---VSVSRDETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFCDGGNENLSH 290
D ++ G ++ ++ A G+ P + EN H
Sbjct: 211 EAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSL--GICIP--YPYVDSGENWGH 266
Query: 291 SVLIVGYGVDRTKFTHKAVPY----WIIKNSWGEGWGEKGYF 328
+VLIVGY K P +IIKNSWG WGE GYF
Sbjct: 267 AVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYF 308
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 73.8 bits (181), Expect = 2e-14
Identities = 74/298 (24%), Positives = 112/298 (37%), Gaps = 95/298 (31%)
Query: 126 LPRAFDW--------REYDAVTGVKDQTMCGSSWAFSTT----GNIE-GVYAAKTKKLVS 172
LP+ F W REYD V +Q +CGS + S IE + KK ++
Sbjct: 381 LPKNFTWGDPFNNNTREYD----VTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLN 436
Query: 173 -----LSEQELIDCDQEDDGCEGGSISNAFDTIMSKLGG--GLEEEKTYPYRGDDKACRL 225
LS Q ++ C D GC GG F ++SK+ G+ +K +PY ++ C
Sbjct: 437 NFDDLLSIQTVLSCSFYDQGCNGG-----FPYLVSKMAKLQGIPLDKVFPYTATEQTCPY 491
Query: 226 NKKA---------TQVKINGYVSVSRDETDM----------------AK----------- 249
+IN S ++DM AK
Sbjct: 492 QVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKDYNYIGGCYGC 551
Query: 250 -----------YLVENGPMAVAINAYALQF-YVTGV----SHPIQFFCD----------- 282
+ NGP+ + A + Y GV P C
Sbjct: 552 NQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYN 611
Query: 283 -GGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRLYRGDGSCGI 339
G E ++H++++VG+G + K YWI +NSWG+ WG++GYF++ RG GI
Sbjct: 612 ITGWEKVNHAIVLVGWG--EEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGI 667
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 66.1 bits (161), Expect = 7e-12
Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 48/259 (18%)
Query: 125 TLPRAFDWREYDAVT---GVKDQT---MCGSSWAFSTTGNIEG---VYAAKTKKL---VS 172
P A+ W + + + C SS+ + + V + +T L
Sbjct: 204 PPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTF 263
Query: 173 LSEQELIDCDQEDDGCEGGSISNAFDTIMSKLGGGLEEEKTY--PYRGDDKACRLNKKAT 230
LS + ++DC Q GC GG + G+ +Y PY D R K
Sbjct: 264 LSARHVLDCSQYGQGCAGGF---PEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRR 320
Query: 231 QVK---------INGYVSVSRDETDMAKYLVENGPMAVAINAYALQFYVTGVSHPIQFFC 281
+ + GY D ++ + +GP+ ++ A + + S +
Sbjct: 321 PSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYV 380
Query: 282 DGGN---------------ENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEG--WGE 324
+ N++H+VLI+G+G D YW++ + WG W +
Sbjct: 381 SLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDEN-----GGDYWLVLDPWGSRRSWCD 435
Query: 325 KGYFRLYRGDGSCGINDYV 343
G ++ RG + I V
Sbjct: 436 GGTRKIARGVNAYNIESEV 454
>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that
are composed solely of multiple copies of this domain
such as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS. Peptide proteinase
inhibitors can be found as single domain proteins or as
single or multiple domains within proteins; these are
referred to as either simple or compound inhibitors,
respectively. In many cases they are synthesised as
part of a larger precursor protein, either as a
prepropeptide or as an N-terminal domain associated
with an inactive peptidase or zymogen. This domain
prevents access of the substrate to the active site.
Removal of the N-terminal inhibitor domain either by
interaction with a second peptidase or by autocatalytic
cleavage activates the zymogen. Other inhibitors
interact direct with proteinases using a simple
noncovalent lock and key mechanism; while yet others
use a conformational change-based trapping mechanism
that depends on their structural and thermodynamic
properties.
Length = 57
Score = 59.2 bits (144), Expect = 8e-12
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 42 FNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYGLNEFSDLSTAE 98
F + ++H K+Y++ E R IF NL+KI+ S G+N+FSDL+ E
Sbjct: 1 FEQWKKKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKYEHSYKLGVNQFSDLTPEE 57
>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that
are composed solely of multiple copies of this domain
such as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS.
Length = 58
Score = 58.8 bits (143), Expect = 1e-11
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 42 FNYFLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQDTEHGSGVYGLNEFSDLSTAEF 99
F + +++ K+Y + E R IF NLR I+ + S GLN+F+DL+ EF
Sbjct: 1 FEDWKKKYGKSYYSEEEELYRFQIFKENLRFIEEHNKKGNVSYTLGLNQFADLTDEEF 58
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 54.3 bits (130), Expect = 5e-08
Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 34/220 (15%)
Query: 141 VKDQTMCGSSWAFSTTGNIEGVYAAKTKKLVSLSEQELIDCDQED--DGCEGGSISNAFD 198
++DQ C SW F++ ++E + K + ++S + +C + + D C+ GS F
Sbjct: 547 IEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFL 606
Query: 199 TIMSKLGGGLEEEKTYPYR----GDD------------KACRL----NKKATQVKINGYV 238
I+ G L + Y Y G+D ++ K+ + Y
Sbjct: 607 QIIED-NGFLPADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYR 665
Query: 239 SVS----RDETDMAKYLVENGPMAV-AINAYALQFYVTGVS---HPIQFFCDGGNENLSH 290
+ D+ D ++++ M ++ AY V G +Q C G++ H
Sbjct: 666 AYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAENVLGYEFNGKKVQNLC--GDDTADH 723
Query: 291 SVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYFRL 330
+V IVGYG + + YWI++NSWG+ WG++GYF++
Sbjct: 724 AVNIVGYG-NYINDEDEKKSYWIVRNSWGKYWGDEGYFKV 762
>gnl|CDD|202517 pfam03051, Peptidase_C1_2, Peptidase C1-like family. This family
is closely related to the Peptidase_C1 family pfam00112,
containing several prokaryotic and eukaryotic
aminopeptidases and bleomycin hydrolases.
Length = 438
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 282 DGGNENLSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
D G ++H++++ G D K W ++NSWG+ G+KGYF
Sbjct: 353 DYGESLMTHAMVLTGVDEDDDGKPTK----WKVENSWGDDSGKKGYF 395
>gnl|CDD|238328 cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database
nomenclature); composed of eukaryotic bleomycin
hydrolases (BH) and bacterial aminopeptidases C (pepC).
The proteins of this subfamily contain a large insert
relative to the C1A peptidase (papain) subfamily. BH is
a cysteine peptidase that detoxifies bleomycin by
hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. Bleomycin, a glycopeptide derived from the
fungus Streptomyces verticullus, is an effective
anticancer drug due to its ability to induce DNA strand
breaks. Human BH is the major cause of tumor cell
resistance to bleomycin chemotherapy, and is also
genetically linked to Alzheimer's disease. In addition
to its peptidase activity, the yeast BH (Gal6) binds DNA
and acts as a repressor in the Gal4 regulatory system.
BH forms a hexameric ring barrel structure with the
active sites imbedded in the central channel. The
bacterial homolog of BH, called pepC, is a cysteine
aminopeptidase possessing broad specificity. Although
its crystal structure has not been solved, biochemical
analysis shows that pepC also forms a hexamer. .
Length = 437
Score = 38.3 bits (90), Expect = 0.004
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 288 LSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
++H++++ G +D K W ++NSWGE G+KGYF
Sbjct: 358 MTHAMVLTGVDLDEDGKPVK----WKVENSWGEKVGKKGYF 394
>gnl|CDD|226107 COG3579, PepC, Aminopeptidase C [Amino acid transport and
metabolism].
Length = 444
Score = 37.1 bits (86), Expect = 0.013
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 288 LSHSVLIVGYGVDRTKFTHKAVPYWIIKNSWGEGWGEKGYF 328
++H++++ G +D T + W ++NSWG+ G+KGYF
Sbjct: 361 MTHAMVLTGVDLDETGNPLR----WKVENSWGKDVGKKGYF 397
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 773
Score = 32.1 bits (73), Expect = 0.53
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 166 KTKKLVSLSE--QELIDCDQEDDGCEGGSISNAFDTIMSKLGGGLEEEKTY-PYRGDDKA 222
+KL+S + L++ E DG ++ NAF T ++ Y D
Sbjct: 371 YVQKLLSCHDLFPSLVNESFEGDGSIVKALGNAFKTFINGNESADSGPSEYLAKYIDGLL 430
Query: 223 CRLNKKATQVKINGYVSVSRDETDMAKYLVE 253
+ K++ KI + + +Y+ E
Sbjct: 431 KKDGKQSFIGKIKDLLQDI---ITLFRYVEE 458
>gnl|CDD|118686 pfam10158, LOH1CR12, Tumour suppressor protein. This is a region
of 130 amino acids that is the most conserved region of
hypothetical proteins involved in loss of heterozygosity
and thus tumour suppression. The exact function is not
known.
Length = 131
Score = 28.2 bits (63), Expect = 3.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 45 FLEQHNKTYATLVEYYSRLHIFSGNLRKIQLLQD 78
+ + K YA+ E +S+++ S LR+IQ++ D
Sbjct: 71 EMVERQKRYASYAEQFSKVNEISAQLRRIQMILD 104
>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase
component YidC; Provisional.
Length = 795
Score = 29.0 bits (65), Expect = 4.6
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 141 VKDQTMCGSSWAFSTTGN---IEGVYAAKTKKLVSLS---EQELIDCDQEDDGCEGGS-- 192
KD + G++ F +GN G+Y +K + L SL + ++ D+ED S
Sbjct: 167 NKDSAIYGTALVFLRSGNGYLPLGIYNSKEECLESLDLPMTRAVVFADKEDAAKPTASGS 226
Query: 193 ---ISNAF-DTIMSKLGGGLEE 210
+SN + ++S+ G +E
Sbjct: 227 YYVLSNEYMQLVVSQESGAIEG 248
>gnl|CDD|236784 PRK10876, recB, exonuclease V subunit beta; Provisional.
Length = 1181
Score = 28.8 bits (65), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 293 LIVGYGVDRTKFTHKAVPYWIIK-NSWGE 320
LI GVDR + K +P W+ K ++W E
Sbjct: 247 LIESSGVDRRSYNSKNLPKWLEKISAWAE 275
>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant
proteins.
Length = 72
Score = 26.0 bits (58), Expect = 7.2
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 232 VKINGYVSVSRDETDMAKYLVENGP 256
++I GY + +E ++ KY +EN P
Sbjct: 10 LEIKGY-RGTEEEKELVKYFLENAP 33
>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General
function prediction only].
Length = 339
Score = 27.9 bits (63), Expect = 7.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 280 FCDGGNENLSHSVLIVGYGVD 300
+C GNENL + I GY D
Sbjct: 99 YCRSGNENLCPNQKITGYTTD 119
>gnl|CDD|235092 PRK02963, PRK02963, carbon starvation induced protein; Validated.
Length = 316
Score = 27.7 bits (62), Expect = 9.7
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 16/107 (14%)
Query: 11 ALLSLTVSVSSFMVVGDEKLHHLHHVK-HTALFNYFLEQHNKTYATLVEY--YSRLHI-- 65
+ L S F + + L + FLEQ + +EY + R +
Sbjct: 4 NAVDLAQDYSGFTLAPSAQSPRLLELTFTEQTTKQFLEQVAEWPVQALEYKSFLRFRVAK 63
Query: 66 ---------FSGNLRKIQLLQDTEHGSGVYGLNEFSDLSTAEFQAKY 103
L K L D G+ + D++ A+ K
Sbjct: 64 ILDDLCGNQLQPLLLKT--LLDRAEGAFLINAVGIDDVAQADEMVKL 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,561,875
Number of extensions: 1659557
Number of successful extensions: 1274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1220
Number of HSP's successfully gapped: 36
Length of query: 348
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 250
Effective length of database: 6,590,910
Effective search space: 1647727500
Effective search space used: 1647727500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)