Query psy2560
Match_columns 215
No_of_seqs 195 out of 1791
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 19:20:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158|consensus 100.0 2.9E-50 6.2E-55 341.1 18.0 178 27-205 289-470 (499)
2 KOG0156|consensus 100.0 1.1E-49 2.4E-54 340.5 16.9 183 28-213 282-468 (489)
3 PLN02971 tryptophan N-hydroxyl 100.0 7.9E-48 1.7E-52 336.4 17.7 183 28-211 323-512 (543)
4 PLN02500 cytochrome P450 90B1 100.0 1.1E-47 2.4E-52 332.0 17.8 180 27-207 274-468 (490)
5 PLN02394 trans-cinnamate 4-mon 100.0 2E-47 4.4E-52 331.3 17.8 179 28-207 289-474 (503)
6 PLN02183 ferulate 5-hydroxylas 100.0 3.2E-47 7E-52 330.9 17.3 178 28-206 300-482 (516)
7 PLN03234 cytochrome P450 83B1; 100.0 5.1E-47 1.1E-51 328.5 17.2 178 28-206 284-469 (499)
8 PF00067 p450: Cytochrome P450 100.0 3.2E-47 7E-52 323.2 15.2 181 27-208 257-442 (463)
9 KOG0157|consensus 100.0 3.8E-47 8.2E-52 328.3 15.7 181 26-207 285-472 (497)
10 PLN02169 fatty acid (omega-1)- 100.0 1.3E-46 2.8E-51 325.8 17.1 172 28-206 297-475 (500)
11 PTZ00404 cytochrome P450; Prov 100.0 9.9E-47 2.1E-51 325.5 16.1 171 35-206 285-457 (482)
12 PLN02426 cytochrome P450, fami 100.0 1.5E-46 3.3E-51 325.3 16.9 177 29-206 290-473 (502)
13 PLN00168 Cytochrome P450; Prov 100.0 3E-46 6.5E-51 325.1 17.7 179 27-206 301-490 (519)
14 PLN02774 brassinosteroid-6-oxi 100.0 3.6E-46 7.9E-51 320.5 17.3 180 28-208 260-443 (463)
15 PLN02738 carotene beta-ring hy 100.0 4.2E-46 9E-51 328.9 18.0 179 28-208 387-571 (633)
16 PLN02966 cytochrome P450 83A1 100.0 3.7E-46 8E-51 323.4 16.6 178 28-206 285-470 (502)
17 PLN02290 cytokinin trans-hydro 100.0 3.8E-46 8.3E-51 324.3 16.6 176 29-206 313-490 (516)
18 PLN03141 3-epi-6-deoxocathaste 100.0 7.1E-46 1.5E-50 317.8 17.5 179 27-206 246-428 (452)
19 PLN03195 fatty acid omega-hydr 100.0 3.5E-46 7.6E-51 324.5 15.8 178 28-206 288-491 (516)
20 KOG0159|consensus 100.0 1.6E-46 3.5E-51 313.6 12.7 178 28-206 312-493 (519)
21 PLN00110 flavonoid 3',5'-hydro 100.0 1.7E-45 3.6E-50 319.2 16.7 178 28-206 285-470 (504)
22 PLN02196 abscisic acid 8'-hydr 100.0 2.3E-45 5.1E-50 315.5 17.1 183 27-211 259-444 (463)
23 PLN03018 homomethionine N-hydr 100.0 3.8E-45 8.2E-50 318.5 18.0 178 28-206 310-497 (534)
24 PLN02687 flavonoid 3'-monooxyg 100.0 3.8E-45 8.2E-50 318.1 17.2 179 27-206 292-479 (517)
25 PLN03112 cytochrome P450 famil 100.0 4E-45 8.6E-50 317.8 16.7 178 28-206 292-478 (514)
26 PLN02655 ent-kaurene oxidase 100.0 5.6E-45 1.2E-49 313.4 17.5 177 28-206 258-438 (466)
27 PLN02302 ent-kaurenoic acid ox 100.0 9.8E-45 2.1E-49 313.5 17.0 178 28-206 283-464 (490)
28 PLN02936 epsilon-ring hydroxyl 100.0 1.3E-43 2.9E-48 306.5 17.2 178 28-207 274-458 (489)
29 PLN02987 Cytochrome P450, fami 100.0 2.8E-43 6.1E-48 302.9 17.1 180 27-207 262-447 (472)
30 KOG0684|consensus 100.0 1.9E-43 4.1E-48 289.5 13.1 184 29-212 269-466 (486)
31 PLN02648 allene oxide synthase 100.0 3.6E-39 7.8E-44 276.9 16.1 185 27-211 266-467 (480)
32 COG2124 CypX Cytochrome P450 [ 100.0 2.6E-39 5.7E-44 273.8 12.7 157 27-206 231-387 (411)
33 PF12508 DUF3714: Protein of u 61.5 3.1 6.6E-05 32.0 0.3 42 93-135 53-94 (200)
34 PF05952 ComX: Bacillus compet 50.7 17 0.00036 21.8 2.2 19 55-73 4-22 (57)
35 PF09201 SRX: SRX; InterPro: 41.5 26 0.00056 25.2 2.3 23 176-198 18-40 (148)
36 PF12444 Sox_N: Sox developmen 38.1 22 0.00048 23.2 1.5 22 186-207 60-81 (84)
37 TIGR03779 Bac_Flav_CT_M Bacter 36.9 14 0.0003 31.7 0.5 20 117-136 279-298 (410)
38 KOG3506|consensus 30.3 25 0.00054 20.8 0.7 10 170-179 13-22 (56)
39 PF04798 Baculo_19: Baculoviru 28.8 8.3 0.00018 27.9 -1.8 18 166-184 58-75 (146)
40 PF02663 FmdE: FmdE, Molybdenu 27.4 65 0.0014 22.7 2.6 23 175-197 4-26 (131)
41 COG1759 5-formaminoimidazole-4 27.3 1.1E+02 0.0023 25.6 4.0 26 164-192 326-351 (361)
42 PF07886 BA14K: BA14K-like pro 26.9 53 0.0012 17.0 1.5 17 163-179 15-31 (31)
43 PF07849 DUF1641: Protein of u 26.2 93 0.002 17.2 2.6 18 54-71 13-30 (42)
44 cd04518 TBP_archaea archaeal T 22.9 44 0.00095 25.1 1.0 31 151-181 29-63 (174)
45 PF14550 Peptidase_U35_2: Puta 22.2 77 0.0017 22.3 2.1 22 115-136 72-93 (122)
46 PF11227 DUF3025: Protein of u 22.1 53 0.0012 25.4 1.4 20 138-157 192-211 (212)
47 COG2101 SPT15 TATA-box binding 21.8 29 0.00062 26.0 -0.1 32 151-182 35-70 (185)
48 PF08776 VASP_tetra: VASP tetr 21.3 1.2E+02 0.0027 16.7 2.3 14 64-77 10-23 (40)
49 PHA03162 hypothetical protein; 21.0 57 0.0012 23.1 1.2 24 172-195 2-25 (135)
50 PF08492 SRP72: SRP72 RNA-bind 20.7 62 0.0014 19.6 1.2 6 154-159 44-49 (59)
51 PF14129 DUF4296: Domain of un 20.1 1.7E+02 0.0037 18.9 3.3 40 37-76 37-76 (87)
No 1
>KOG0158|consensus
Probab=100.00 E-value=2.9e-50 Score=341.11 Aligned_cols=178 Identities=34% Similarity=0.700 Sum_probs=166.1
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCC
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLY 106 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~ 106 (215)
.++.+++++. ++.|++||+|||+++|+.++|+|++||++|+|||+||+++......++++.+.+|+||++||+||||+|
T Consensus 289 ~lt~dei~aQ-afvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~ETLR~y 367 (499)
T KOG0158|consen 289 ALTDDEIAAQ-AFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLEEKEGLTYDSLSKLKYLDMVIKETLRLY 367 (499)
T ss_pred ccCHHHHHHH-HHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCCCHHHHhCCcHHHHHHHHHHhhC
Confidence 4677888555 899999999999999999999999999999999999999943333399999999999999999999999
Q ss_pred CCccccceeeccCcccC-CEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC---CCCCccccCCCCCCCcccHH
Q psy2560 107 PPVPVIARQLYAPLKTP-NMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF---KHPYAYVPFSTGPRNCIGQK 182 (215)
Q Consensus 107 p~~~~~~r~~~~~~~i~-g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~---~~~~~~~~Fg~G~~~C~G~~ 182 (215)
|+++.+.|.|.+|+.++ ++.|++|+.|.++.+++|+||++||||++|+||||.+.. ..+..|+|||.|||.|+|.+
T Consensus 368 P~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~~~~~~~ylPFG~GPR~CIGmR 447 (499)
T KOG0158|consen 368 PPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNKSRHPGAYLPFGVGPRNCIGMR 447 (499)
T ss_pred CCcccccceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCcccccCCccccCCCCCccccHHHH
Confidence 99999999999999999 999999999999999999999999999999999999543 46789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCeecccC
Q psy2560 183 VAMMSQKILIAKILKRYVVGSTV 205 (215)
Q Consensus 183 ~A~~~~~~~l~~ll~~f~~~~~~ 205 (215)
||.+++|+.|+.||++|+++...
T Consensus 448 fa~mq~K~~L~~lL~~f~~~~~~ 470 (499)
T KOG0158|consen 448 FALMEAKLALAHLLRNFSFEVCP 470 (499)
T ss_pred HHHHHHHHHHHHHHhhCEEecCC
Confidence 99999999999999999999876
No 2
>KOG0156|consensus
Probab=100.00 E-value=1.1e-49 Score=340.50 Aligned_cols=183 Identities=27% Similarity=0.513 Sum_probs=168.8
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
++++++. ..++++++||+|||++++.|++.+|++||++|+|+++|++++.+.+..++.+|+.++|||+|+|+|++|++|
T Consensus 282 ~t~~~i~-~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~D~~~lpYL~Avi~E~~Rl~p 360 (489)
T KOG0156|consen 282 LTDDHLK-ALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLVSESDLPKLPYLKAVIKETLRLHP 360 (489)
T ss_pred CCHHHHH-HHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChhhhccCHHHHHHHHHHHhcCC
Confidence 6788884 448999999999999999999999999999999999999999444555999999999999999999999999
Q ss_pred Cccc-cceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCC---CCCCCccccCCCCCCCcccHHH
Q psy2560 108 PVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEK---FKHPYAYVPFSTGPRNCIGQKV 183 (215)
Q Consensus 108 ~~~~-~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~---~~~~~~~~~Fg~G~~~C~G~~~ 183 (215)
++|. ++|.+++|+.++||.||+||.|+++.|++|+||++|+||++|+||||++. ......++|||.|+|.|||..+
T Consensus 361 ~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~d~~~~~~~~iPFG~GRR~CpG~~L 440 (489)
T KOG0156|consen 361 PLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSNDGKGLDFKLIPFGSGRRICPGEGL 440 (489)
T ss_pred CccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCccccCCceEecCCCCCcCCCCcHHH
Confidence 9997 79999999999999999999999999999999999999999999999964 2357789999999999999999
Q ss_pred HHHHHHHHHHHHHHhCeecccCCCCCcccC
Q psy2560 184 AMMSQKILIAKILKRYVVGSTVKPKNLRLA 213 (215)
Q Consensus 184 A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~ 213 (215)
|++++.++++.++++|+|+++++ +++++
T Consensus 441 a~~~l~l~la~llq~F~w~~~~~--~~d~~ 468 (489)
T KOG0156|consen 441 ARAELFLFLANLLQRFDWKLPGG--KVDME 468 (489)
T ss_pred HHHHHHHHHHHHHheeeeecCCC--CCCCc
Confidence 99999999999999999999977 44443
No 3
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=7.9e-48 Score=336.42 Aligned_cols=183 Identities=18% Similarity=0.396 Sum_probs=165.8
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
++++++ ...+.++++||+|||+++++|++++|+.||++|+|+++|++++.+.+..++.+++.++||++|||+|++|++|
T Consensus 323 ls~~~i-~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p 401 (543)
T PLN02971 323 LTADEI-KPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHP 401 (543)
T ss_pred CCHHHH-HHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCC
Confidence 566666 5568999999999999999999999999999999999999999544567899999999999999999999999
Q ss_pred Cccc-cceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC------CCCCccccCCCCCCCccc
Q psy2560 108 PVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF------KHPYAYVPFSTGPRNCIG 180 (215)
Q Consensus 108 ~~~~-~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~------~~~~~~~~Fg~G~~~C~G 180 (215)
+++. ++|.+.+|+.++||.||||+.|+++.|++|+||++|+||++|+||||++.. ..+..++|||+|+|.|+|
T Consensus 402 ~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G 481 (543)
T PLN02971 402 VAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAA 481 (543)
T ss_pred CcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCC
Confidence 9997 789999999999999999999999999999999999999999999999532 234579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCeecccCCCCCcc
Q psy2560 181 QKVAMMSQKILIAKILKRYVVGSTVKPKNLR 211 (215)
Q Consensus 181 ~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~ 211 (215)
++||+.+++++++.|+++|+|+++++...+.
T Consensus 482 ~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~ 512 (543)
T PLN02971 482 PALGTAITTMMLARLLQGFKWKLAGSETRVE 512 (543)
T ss_pred HHHHHHHHHHHHHHHHHhCEEEeCCCCCCcc
Confidence 9999999999999999999999876543333
No 4
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=1.1e-47 Score=331.96 Aligned_cols=180 Identities=18% Similarity=0.324 Sum_probs=163.4
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCCCCchhhhcCcHHHHHHHhh
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVG-----FYDGPVTIQTLASMDYLERCIKE 101 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~-----~~~~~~~~~~~~~~~~l~a~i~E 101 (215)
..+++++ ...+.++++||+|||+++++|++++|++||++|+|+++|++++. .++..++.+++.++||+++||+|
T Consensus 274 ~ls~~~i-~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikE 352 (490)
T PLN02500 274 NLSTEQI-LDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINE 352 (490)
T ss_pred CCCHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHH
Confidence 3566777 55589999999999999999999999999999999999999872 12345789999999999999999
Q ss_pred hcCCCCCccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC----------CCCCccccC
Q psy2560 102 SMRLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF----------KHPYAYVPF 171 (215)
Q Consensus 102 ~lRl~p~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~----------~~~~~~~~F 171 (215)
++|++|+++.+.|.+.+|+.++||.||||+.|+++.+++|+||++|+||++|+||||++.. ..+..++||
T Consensus 353 tlRl~P~~~~~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpF 432 (490)
T PLN02500 353 TLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPF 432 (490)
T ss_pred HHhcCCCccCeeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCC
Confidence 9999999999899999999999999999999999999999999999999999999999532 135689999
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhCeecccCCC
Q psy2560 172 STGPRNCIGQKVAMMSQKILIAKILKRYVVGSTVKP 207 (215)
Q Consensus 172 g~G~~~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~ 207 (215)
|+|+|.|+|++||++|++++++.|+++|+|+++++.
T Consensus 433 G~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~ 468 (490)
T PLN02500 433 GGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEAD 468 (490)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCC
Confidence 999999999999999999999999999999987654
No 5
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=2e-47 Score=331.34 Aligned_cols=179 Identities=26% Similarity=0.429 Sum_probs=161.4
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
.+++++ ...+.++++||+|||+.+++|++++|++||++|+|+++|++++.+.+..++.+++.++||++|||+|++|++|
T Consensus 289 l~~~~i-~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~lpyl~avi~EtlRl~p 367 (503)
T PLN02394 289 INEDNV-LYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGNQVTEPDTHKLPYLQAVVKETLRLHM 367 (503)
T ss_pred CCHHHH-HHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHhHHhhCHHHHHHHHHHHhcCC
Confidence 455665 4457888999999999999999999999999999999999999433456788999999999999999999999
Q ss_pred Ccccc-ceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC------CCCCccccCCCCCCCccc
Q psy2560 108 PVPVI-ARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF------KHPYAYVPFSTGPRNCIG 180 (215)
Q Consensus 108 ~~~~~-~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~------~~~~~~~~Fg~G~~~C~G 180 (215)
+++.. .|.+.+|+.++||.||+||.|.++.+.+|+||++|++|++|+||||++.. .....++|||+|+|.|+|
T Consensus 368 ~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG 447 (503)
T PLN02394 368 AIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPG 447 (503)
T ss_pred CcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCC
Confidence 99984 78889999999999999999999999999999999999999999998532 124579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCeecccCCC
Q psy2560 181 QKVAMMSQKILIAKILKRYVVGSTVKP 207 (215)
Q Consensus 181 ~~~A~~~~~~~l~~ll~~f~~~~~~~~ 207 (215)
++||++|++++++.|+++|++++.++.
T Consensus 448 ~~~A~~e~~~~la~ll~~f~~~~~~~~ 474 (503)
T PLN02394 448 IILALPILGIVLGRLVQNFELLPPPGQ 474 (503)
T ss_pred HHHHHHHHHHHHHHHHHHceeEeCCCC
Confidence 999999999999999999999987654
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=3.2e-47 Score=330.94 Aligned_cols=178 Identities=22% Similarity=0.430 Sum_probs=163.2
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
.+++++ ...++++++||+|||+.+++|++++|++||++|+|+++|++++.+....++.+++.++||+++||+|++|++|
T Consensus 300 l~~~~i-~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p 378 (516)
T PLN02183 300 LTRDNI-KAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLNRRVEESDLEKLTYLKCTLKETLRLHP 378 (516)
T ss_pred CCHHHH-HHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhccChHHHHHHHHHhccCC
Confidence 456666 5568899999999999999999999999999999999999999433456889999999999999999999999
Q ss_pred CccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCCC-----CCCccccCCCCCCCcccHH
Q psy2560 108 PVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFK-----HPYAYVPFSTGPRNCIGQK 182 (215)
Q Consensus 108 ~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~~-----~~~~~~~Fg~G~~~C~G~~ 182 (215)
++|...|.+.+|+.++||.|||||.|.++.+++|+||++|+||++|+||||+++.. ..+.|+|||+|+|.|+|++
T Consensus 379 ~~p~~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~ 458 (516)
T PLN02183 379 PIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQ 458 (516)
T ss_pred CccceeeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChH
Confidence 99998899999999999999999999999999999999999999999999995321 3457999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCeecccCC
Q psy2560 183 VAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 183 ~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
||++|++++++.|+++|++++.++
T Consensus 459 lA~~e~~l~la~ll~~f~~~~~~~ 482 (516)
T PLN02183 459 LGLYALDLAVAHLLHCFTWELPDG 482 (516)
T ss_pred HHHHHHHHHHHHHHheeEEEcCCC
Confidence 999999999999999999998765
No 7
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=5.1e-47 Score=328.53 Aligned_cols=178 Identities=27% Similarity=0.419 Sum_probs=162.9
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
.+++++ ...++++++||+|||+++++|++++|++||++|+|+++|++++.+....++.+++.++||+++||+|++|++|
T Consensus 284 ~~~~~i-~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~avi~E~lRl~p 362 (499)
T PLN03234 284 FTHENV-KAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYVSEEDIPNLPYLKAVIKESLRLEP 362 (499)
T ss_pred CCHHHH-HHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHhcChHHHHHHHHHhccCC
Confidence 456666 5668999999999999999999999999999999999999998444556899999999999999999999999
Q ss_pred Cccc-cceeeccCcccCCEEeCCCcEEEEeccccccCCCCC-CCCCCcccCCCCCCC------CCCCccccCCCCCCCcc
Q psy2560 108 PVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYF-PNPLEFNPDRFLEKF------KHPYAYVPFSTGPRNCI 179 (215)
Q Consensus 108 ~~~~-~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~l~~~------~~~~~~~~Fg~G~~~C~ 179 (215)
+++. +.|.+.+|+.++||.||+||.|.++.+.+|+||++| +||++|+|+||++.. .....++|||+|+|.|+
T Consensus 363 ~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~ 442 (499)
T PLN03234 363 VIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCP 442 (499)
T ss_pred CccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCC
Confidence 9998 479999999999999999999999999999999999 899999999999532 13567999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 180 GQKVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 180 G~~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
|+++|+++++++++.|+++|+++++++
T Consensus 443 G~~~A~~e~~~~la~ll~~f~~~~~~~ 469 (499)
T PLN03234 443 AMHLGIAMVEIPFANLLYKFDWSLPKG 469 (499)
T ss_pred ChHHHHHHHHHHHHHHHHheeeeCCCC
Confidence 999999999999999999999999875
No 8
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=3.2e-47 Score=323.19 Aligned_cols=181 Identities=38% Similarity=0.736 Sum_probs=164.3
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCC
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLY 106 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~ 106 (215)
..+++++ ...++.+++||++||+.+++|++++|++||++|+++++|++++...+..++.+++.++|||+|||+|++|++
T Consensus 257 ~ls~~~i-~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~ 335 (463)
T PF00067_consen 257 GLSDEEI-AAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGREITFEDLSKLPYLDAVIKETLRLY 335 (463)
T ss_dssp SSSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSSSHHHHHHGTGHHHHHHHHHHHHHS
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5567777 666899999999999999999999999999999999999999964445788999999999999999999999
Q ss_pred CCcc-ccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC----CCCCccccCCCCCCCcccH
Q psy2560 107 PPVP-VIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF----KHPYAYVPFSTGPRNCIGQ 181 (215)
Q Consensus 107 p~~~-~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~----~~~~~~~~Fg~G~~~C~G~ 181 (215)
|+++ .+.|.+.+|++++||.||+|+.|.++.+.+|+||++|+||++|+|+||++.. .....++|||.|+|.|||+
T Consensus 336 p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 415 (463)
T PF00067_consen 336 PPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGR 415 (463)
T ss_dssp TSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchHH
Confidence 9999 6899999999999999999999999999999999999999999999999653 4677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCeecccCCCC
Q psy2560 182 KVAMMSQKILIAKILKRYVVGSTVKPK 208 (215)
Q Consensus 182 ~~A~~~~~~~l~~ll~~f~~~~~~~~~ 208 (215)
+||+++++++++.||++|+++++++.+
T Consensus 416 ~~A~~~~~~~la~ll~~f~~~~~~~~~ 442 (463)
T PF00067_consen 416 NLAMMEMKVFLAKLLRRFDFELVPGSE 442 (463)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHhCEEEECCCCC
Confidence 999999999999999999999976433
No 9
>KOG0157|consensus
Probab=100.00 E-value=3.8e-47 Score=328.31 Aligned_cols=181 Identities=41% Similarity=0.785 Sum_probs=161.3
Q ss_pred CCcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCCchhhhcCcHHHHHHHhhhcC
Q psy2560 26 SHPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESV-GFYDGPVTIQTLASMDYLERCIKESMR 104 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~-~~~~~~~~~~~~~~~~~l~a~i~E~lR 104 (215)
...+++++ ..++.+|++||+|||+++++|+++.|+.||++|+|+++|++++ +............+|+|+++||+|+||
T Consensus 285 ~~l~~~~i-~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLR 363 (497)
T KOG0157|consen 285 KPLTDEDI-RDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQMKYLEMVIKESLR 363 (497)
T ss_pred CCCCHHHH-HHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhhHHHHHHHHHHhc
Confidence 45667776 6669999999999999999999999999999999999999999 333333333333379999999999999
Q ss_pred CCCCccccceeeccCcccC-CEEeCCCcEEEEeccccccCCCCCC-CCCCcccCCCCCCC----CCCCccccCCCCCCCc
Q psy2560 105 LYPPVPVIARQLYAPLKTP-NMLVPAGCSIFINVFEQHRIPEYFP-NPLEFNPDRFLEKF----KHPYAYVPFSTGPRNC 178 (215)
Q Consensus 105 l~p~~~~~~r~~~~~~~i~-g~~Ip~g~~v~~~~~~~~~d~~~~~-~p~~f~p~R~l~~~----~~~~~~~~Fg~G~~~C 178 (215)
++|++|.+.|.+.+|+.++ ||.||+|+.|.++.+.+|||+.+|+ ||++|+|+||+++. .++++|+|||+|+|.|
T Consensus 364 Lyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~C 443 (497)
T KOG0157|consen 364 LYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNC 443 (497)
T ss_pred cCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccc
Confidence 9999999999999999995 8999999999999999999999996 99999999999432 3478999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhCeecccCCC
Q psy2560 179 IGQKVAMMSQKILIAKILKRYVVGSTVKP 207 (215)
Q Consensus 179 ~G~~~A~~~~~~~l~~ll~~f~~~~~~~~ 207 (215)
+|++||++|+|++++.++++|+|++..+.
T Consensus 444 iG~~fA~lemKv~l~~ll~~f~~~~~~~~ 472 (497)
T KOG0157|consen 444 IGQKFAMLEMKVVLAHLLRRFRIEPVGGD 472 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHheEEEecCCC
Confidence 99999999999999999999999987664
No 10
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=1.3e-46 Score=325.81 Aligned_cols=172 Identities=27% Similarity=0.547 Sum_probs=155.7
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
.+++++ ...++++++||+|||+++++|++++|++||++|+|+++|++++ .+.+++.++||+++|++|+||++|
T Consensus 297 ~~~~~i-~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v------~~~~dl~~L~Yl~avi~EtLRl~P 369 (500)
T PLN02169 297 KKDKFI-RDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTK------FDNEDLEKLVYLHAALSESMRLYP 369 (500)
T ss_pred CChHHH-HHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhh------CCHHHHhcCHHHHHHHHHHHhcCC
Confidence 345555 5568999999999999999999999999999999999999876 367899999999999999999999
Q ss_pred CccccceeeccCccc-CCEEeCCCcEEEEeccccccCCCCC-CCCCCcccCCCCCCC-----CCCCccccCCCCCCCccc
Q psy2560 108 PVPVIARQLYAPLKT-PNMLVPAGCSIFINVFEQHRIPEYF-PNPLEFNPDRFLEKF-----KHPYAYVPFSTGPRNCIG 180 (215)
Q Consensus 108 ~~~~~~r~~~~~~~i-~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~l~~~-----~~~~~~~~Fg~G~~~C~G 180 (215)
++|...|.+.+|..+ +|+.||+|+.|.++.|++||||++| +||++|+||||++.. ..++.|+|||+|+|.|+|
T Consensus 370 ~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG 449 (500)
T PLN02169 370 PLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLG 449 (500)
T ss_pred CCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcC
Confidence 999988888777665 8999999999999999999999999 899999999999432 126789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 181 QKVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 181 ~~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
++||++|++++++.|+++|+++++++
T Consensus 450 ~~~A~~e~k~~la~ll~~f~~~~~~~ 475 (500)
T PLN02169 450 KHLALLQMKIVALEIIKNYDFKVIEG 475 (500)
T ss_pred HHHHHHHHHHHHHHHHHHCEEEEcCC
Confidence 99999999999999999999998754
No 11
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=9.9e-47 Score=325.49 Aligned_cols=171 Identities=30% Similarity=0.474 Sum_probs=159.0
Q ss_pred hhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCCCccc-cc
Q psy2560 35 AIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYPPVPV-IA 113 (215)
Q Consensus 35 ~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p~~~~-~~ 113 (215)
...++++++||+|||+.+++|++++|++||++|+|+++|++++......++.+++.++||+++||+|+||++|+++. ++
T Consensus 285 ~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~ 364 (482)
T PTZ00404 285 LATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLP 364 (482)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHhcCCcccccc
Confidence 45688999999999999999999999999999999999999994334567889999999999999999999999997 79
Q ss_pred eeeccCccc-CCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCCCCCCccccCCCCCCCcccHHHHHHHHHHHH
Q psy2560 114 RQLYAPLKT-PNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFKHPYAYVPFSTGPRNCIGQKVAMMSQKILI 192 (215)
Q Consensus 114 r~~~~~~~i-~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~~~~~~~~~Fg~G~~~C~G~~~A~~~~~~~l 192 (215)
|.+.+|+.+ +|+.||+|+.|.++.+++|+||++|+||++|+||||++. .....++|||.|+|.|+|++||++|+++++
T Consensus 365 R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~-~~~~~~~pFg~G~R~C~G~~~A~~e~~~~l 443 (482)
T PTZ00404 365 RSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNP-DSNDAFMPFSIGPRNCVGQQFAQDELYLAF 443 (482)
T ss_pred eeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCC-CCCCceeccCCCCCCCccHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999999999999999864 345789999999999999999999999999
Q ss_pred HHHHHhCeecccCC
Q psy2560 193 AKILKRYVVGSTVK 206 (215)
Q Consensus 193 ~~ll~~f~~~~~~~ 206 (215)
+.++++|+++++++
T Consensus 444 a~ll~~f~~~~~~~ 457 (482)
T PTZ00404 444 SNIILNFKLKSIDG 457 (482)
T ss_pred HHHHHhcEEecCCC
Confidence 99999999998654
No 12
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=1.5e-46 Score=325.30 Aligned_cols=177 Identities=27% Similarity=0.478 Sum_probs=160.2
Q ss_pred chhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 29 AEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESV-GFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 29 ~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~-~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
+++++ ...++++++||+|||+++++|++++|++||++|+|+++|++++ +.....++.+++.++|||++||+|+||++|
T Consensus 290 ~~~~l-~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~~~l~~LpYl~avi~EtLRl~p 368 (502)
T PLN02426 290 DDKYL-RDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMHYLHAALYESMRLFP 368 (502)
T ss_pred CHHHH-HHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCHHHHhcChHHHHHHHHHHhCCC
Confidence 44445 5668999999999999999999999999999999999999988 333346899999999999999999999999
Q ss_pred CccccceeeccCccc-CCEEeCCCcEEEEeccccccCCCCC-CCCCCcccCCCCCCC----CCCCccccCCCCCCCcccH
Q psy2560 108 PVPVIARQLYAPLKT-PNMLVPAGCSIFINVFEQHRIPEYF-PNPLEFNPDRFLEKF----KHPYAYVPFSTGPRNCIGQ 181 (215)
Q Consensus 108 ~~~~~~r~~~~~~~i-~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~l~~~----~~~~~~~~Fg~G~~~C~G~ 181 (215)
+++...|.+.+|..+ +|+.||+||.|.++.+++|+||++| +||++|+||||++.. ..+..++|||+|+|.|+|+
T Consensus 369 ~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~ 448 (502)
T PLN02426 369 PVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGK 448 (502)
T ss_pred CCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccH
Confidence 999988999998887 8999999999999999999999999 999999999999632 2355799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 182 KVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 182 ~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
++|++|++++++.++++|++++..+
T Consensus 449 ~~A~~e~~~~la~ll~~f~~~~~~~ 473 (502)
T PLN02426 449 EMALMEMKSVAVAVVRRFDIEVVGR 473 (502)
T ss_pred HHHHHHHHHHHHHHHHHceEEEecC
Confidence 9999999999999999999998643
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=3e-46 Score=325.07 Aligned_cols=179 Identities=23% Similarity=0.390 Sum_probs=162.7
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCCchhhhcCcHHHHHHHhhhcCC
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVG-FYDGPVTIQTLASMDYLERCIKESMRL 105 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~-~~~~~~~~~~~~~~~~l~a~i~E~lRl 105 (215)
.++++++ ...++++++||+|||+.+++|++++|++||++|+|+++|++++. ...+.++.+++.++||+++|++|++|+
T Consensus 301 ~lt~~~i-~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl 379 (519)
T PLN00168 301 ALTDDEI-VNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRK 379 (519)
T ss_pred CCCHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhc
Confidence 3566677 55589999999999999999999999999999999999999984 333568999999999999999999999
Q ss_pred CCCccc-cceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC---------CCCCccccCCCCC
Q psy2560 106 YPPVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF---------KHPYAYVPFSTGP 175 (215)
Q Consensus 106 ~p~~~~-~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~---------~~~~~~~~Fg~G~ 175 (215)
+|+++. ++|.+.+|+.++||.||+|+.|.++.+.+|+||++|++|++|+|+||++.. .....++|||+|+
T Consensus 380 ~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~ 459 (519)
T PLN00168 380 HPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGR 459 (519)
T ss_pred CCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCC
Confidence 999987 589999999999999999999999999999999999999999999999531 1245799999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 176 RNCIGQKVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 176 ~~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
|.|||++||++|++++++.|+++|+|++.++
T Consensus 460 R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~ 490 (519)
T PLN00168 460 RICAGLGIAMLHLEYFVANMVREFEWKEVPG 490 (519)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHccceeCCC
Confidence 9999999999999999999999999998754
No 14
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=3.6e-46 Score=320.49 Aligned_cols=180 Identities=21% Similarity=0.342 Sum_probs=163.0
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C--CCCCCchhhhcCcHHHHHHHhhhcC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVG-F--YDGPVTIQTLASMDYLERCIKESMR 104 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~-~--~~~~~~~~~~~~~~~l~a~i~E~lR 104 (215)
.+++++ ...++++++||+|||+++++|++++|++||++|+|+++|++++. . .+..++.+++.++||++++|+|++|
T Consensus 260 ~s~~ei-~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lR 338 (463)
T PLN02774 260 LTDEEI-IDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSR 338 (463)
T ss_pred CCHHHH-HHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHh
Confidence 466666 55689999999999999999999999999999999999999983 2 2346789999999999999999999
Q ss_pred CCCCccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC-CCCCccccCCCCCCCcccHHH
Q psy2560 105 LYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF-KHPYAYVPFSTGPRNCIGQKV 183 (215)
Q Consensus 105 l~p~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~-~~~~~~~~Fg~G~~~C~G~~~ 183 (215)
++|+++.+.|.+.+|++++||.||||+.|+++.+.+|+||++|+||++|+|+||++.. .....++|||+|+|.|||++|
T Consensus 339 l~P~v~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~~~~~~lpFG~G~r~C~G~~~ 418 (463)
T PLN02774 339 LATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLESHNYFFLFGGGTRLCPGKEL 418 (463)
T ss_pred cCCCCCCcccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcCCCccccCcCCCCCcCCcHHH
Confidence 9999998889999999999999999999999999999999999999999999999543 223469999999999999999
Q ss_pred HHHHHHHHHHHHHHhCeecccCCCC
Q psy2560 184 AMMSQKILIAKILKRYVVGSTVKPK 208 (215)
Q Consensus 184 A~~~~~~~l~~ll~~f~~~~~~~~~ 208 (215)
|.+|++++++.|+++|++++.++.+
T Consensus 419 A~~e~~~~la~Ll~~f~~~~~~~~~ 443 (463)
T PLN02774 419 GIVEISTFLHYFVTRYRWEEVGGDK 443 (463)
T ss_pred HHHHHHHHHHHHHHhceEEECCCCc
Confidence 9999999999999999999976543
No 15
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=4.2e-46 Score=328.94 Aligned_cols=179 Identities=30% Similarity=0.536 Sum_probs=163.1
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
.+++++ ..+++++++||+|||+.+++|++++|++||++|+|+++|++++.. +..+++++++++|||+|||+|+||++|
T Consensus 387 ls~~~L-~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~-~~~~t~edL~kLPYL~AVIkEtLRL~p 464 (633)
T PLN02738 387 VSSKQL-RDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLG-DRFPTIEDMKKLKYTTRVINESLRLYP 464 (633)
T ss_pred CCHHHH-HHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC-CCCCCHHHHccCHHHHHHHHHHHhcCC
Confidence 456666 566899999999999999999999999999999999999999843 356799999999999999999999999
Q ss_pred CccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC------CCCCccccCCCCCCCcccH
Q psy2560 108 PVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF------KHPYAYVPFSTGPRNCIGQ 181 (215)
Q Consensus 108 ~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~------~~~~~~~~Fg~G~~~C~G~ 181 (215)
+++.+.|++.+|..++||.||+||.|.++.+.+|+||++|+||++|+||||+... .....++|||.|+|.|+|+
T Consensus 465 ~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~ 544 (633)
T PLN02738 465 QPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGD 544 (633)
T ss_pred CccccceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCH
Confidence 9999889999999999999999999999999999999999999999999998321 2345799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCeecccCCCC
Q psy2560 182 KVAMMSQKILIAKILKRYVVGSTVKPK 208 (215)
Q Consensus 182 ~~A~~~~~~~l~~ll~~f~~~~~~~~~ 208 (215)
+||++|++++++.|+++|+|++..+.+
T Consensus 545 ~lA~~El~l~LA~Llr~F~~el~~~~~ 571 (633)
T PLN02738 545 MFASFENVVATAMLVRRFDFQLAPGAP 571 (633)
T ss_pred HHHHHHHHHHHHHHHHhCeeEeCCCCC
Confidence 999999999999999999999876543
No 16
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=3.7e-46 Score=323.38 Aligned_cols=178 Identities=25% Similarity=0.424 Sum_probs=161.7
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCCCCchhhhcCcHHHHHHHhhhcCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGF--YDGPVTIQTLASMDYLERCIKESMRL 105 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~--~~~~~~~~~~~~~~~l~a~i~E~lRl 105 (215)
.+++++ ...++++++||+|||+++++|++++|++||++|+|+++|++++.. .+..++.+++.++||++|+|+|++|+
T Consensus 285 l~~~~i-~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl 363 (502)
T PLN02966 285 FTVDNV-KAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRI 363 (502)
T ss_pred CCHHHH-HHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhcc
Confidence 455556 555889999999999999999999999999999999999999832 22357899999999999999999999
Q ss_pred CCCccc-cceeeccCcccCCEEeCCCcEEEEeccccccCCCCC-CCCCCcccCCCCCCC----CCCCccccCCCCCCCcc
Q psy2560 106 YPPVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYF-PNPLEFNPDRFLEKF----KHPYAYVPFSTGPRNCI 179 (215)
Q Consensus 106 ~p~~~~-~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~l~~~----~~~~~~~~Fg~G~~~C~ 179 (215)
+|+++. +.|.+.+|+.++||.||+||.|.++.+.+|+||++| ++|++|+||||++.. ..+..|+|||.|+|.|+
T Consensus 364 ~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~ 443 (502)
T PLN02966 364 EPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCP 443 (502)
T ss_pred CCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCC
Confidence 999997 689999999999999999999999999999999999 999999999999532 23568999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 180 GQKVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 180 G~~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
|++||+++++++++.|+++|++++.++
T Consensus 444 G~~~A~~el~~~la~ll~~f~i~~~~~ 470 (502)
T PLN02966 444 GMRLGAAMLEVPYANLLLNFNFKLPNG 470 (502)
T ss_pred CHHHHHHHHHHHHHHHHHhceeeCCCC
Confidence 999999999999999999999998765
No 17
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=3.8e-46 Score=324.28 Aligned_cols=176 Identities=32% Similarity=0.555 Sum_probs=161.0
Q ss_pred chhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCCC
Q psy2560 29 AEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYPP 108 (215)
Q Consensus 29 ~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p~ 108 (215)
+++++ ...++++++||+|||+++++|++++|++||++|+|+++|++++.+. +.++.++++++||++|||+|++|++|+
T Consensus 313 ~~~~i-~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~-~~~~~~~l~~lpYl~avi~EtlRl~p~ 390 (516)
T PLN02290 313 NLQLI-MDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGG-ETPSVDHLSKLTLLNMVINESLRLYPP 390 (516)
T ss_pred CHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCC-CCCCHHHHhcChHHHHHHHHHHHcCCC
Confidence 34444 5558899999999999999999999999999999999999998433 378999999999999999999999999
Q ss_pred ccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCC-CCCCCcccCCCCCCC-CCCCccccCCCCCCCcccHHHHHH
Q psy2560 109 VPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYF-PNPLEFNPDRFLEKF-KHPYAYVPFSTGPRNCIGQKVAMM 186 (215)
Q Consensus 109 ~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~l~~~-~~~~~~~~Fg~G~~~C~G~~~A~~ 186 (215)
++.++|.+.+|+.++||.||+||.|.++.+++|+||++| +||++|+||||++.. .....++|||.|+|.|+|+++|++
T Consensus 391 ~~~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~~~~~~~~pFG~G~R~C~G~~lA~~ 470 (516)
T PLN02290 391 ATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPFAPGRHFIPFAAGPRNCIGQAFAMM 470 (516)
T ss_pred ccccceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCCCCCCeEecCCCCCCCCccHHHHHH
Confidence 998999999999999999999999999999999999999 899999999999542 334579999999999999999999
Q ss_pred HHHHHHHHHHHhCeecccCC
Q psy2560 187 SQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 187 ~~~~~l~~ll~~f~~~~~~~ 206 (215)
|++++++.|+++|+++++++
T Consensus 471 el~l~la~ll~~f~~~~~~~ 490 (516)
T PLN02290 471 EAKIILAMLISKFSFTISDN 490 (516)
T ss_pred HHHHHHHHHHHhceEeeCCC
Confidence 99999999999999998765
No 18
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=7.1e-46 Score=317.85 Aligned_cols=179 Identities=18% Similarity=0.315 Sum_probs=163.3
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C---CCCCCCchhhhcCcHHHHHHHhhh
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESV-G---FYDGPVTIQTLASMDYLERCIKES 102 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~-~---~~~~~~~~~~~~~~~~l~a~i~E~ 102 (215)
..+++++ ...++++++||+|||+.+++|++++|++||++|+++++|++++ . ..+..++.+++.++||++|||+|+
T Consensus 246 ~l~~~~i-~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~ 324 (452)
T PLN03141 246 ELTDDLI-SDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITET 324 (452)
T ss_pred CCCHHHH-HHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHH
Confidence 3556666 5558899999999999999999999999999999999999876 2 223457889999999999999999
Q ss_pred cCCCCCccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCCCCCCccccCCCCCCCcccHH
Q psy2560 103 MRLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFKHPYAYVPFSTGPRNCIGQK 182 (215)
Q Consensus 103 lRl~p~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~~~~~~~~~Fg~G~~~C~G~~ 182 (215)
+|++|+++.++|.+.+|+.++||.||+|+.|+++.+.+|+||++|+||++|+||||++....+..|+|||+|+|.|+|++
T Consensus 325 lRl~p~~~~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~pFG~G~R~C~G~~ 404 (452)
T PLN03141 325 LRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDMNNSSFTPFGGGQRLCPGLD 404 (452)
T ss_pred HhccCCcCCcceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCCCCCCCCCCCCCCCCCChHH
Confidence 99999998889999999999999999999999999999999999999999999999976555678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCeecccCC
Q psy2560 183 VAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 183 ~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
||.+|++++++.|+++|+++++++
T Consensus 405 lA~~el~~~la~ll~~f~~~~~~~ 428 (452)
T PLN03141 405 LARLEASIFLHHLVTRFRWVAEED 428 (452)
T ss_pred HHHHHHHHHHHHHHhcCeeecCCC
Confidence 999999999999999999998765
No 19
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=3.5e-46 Score=324.49 Aligned_cols=178 Identities=25% Similarity=0.449 Sum_probs=158.8
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------------CCCCchh
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFY--------------------DGPVTIQ 87 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~--------------------~~~~~~~ 87 (215)
.+++++ ...++++++||+|||+.+++|++++|++||++|+|+++|++++... +..++++
T Consensus 288 l~~~~i-~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (516)
T PLN03195 288 FTDKSL-RDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYD 366 (516)
T ss_pred CCHHHH-HHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCCCHH
Confidence 556666 5568999999999999999999999999999999999999987211 2357889
Q ss_pred hhcCcHHHHHHHhhhcCCCCCccccceeeccCccc-CCEEeCCCcEEEEeccccccCCCCC-CCCCCcccCCCCCCC---
Q psy2560 88 TLASMDYLERCIKESMRLYPPVPVIARQLYAPLKT-PNMLVPAGCSIFINVFEQHRIPEYF-PNPLEFNPDRFLEKF--- 162 (215)
Q Consensus 88 ~~~~~~~l~a~i~E~lRl~p~~~~~~r~~~~~~~i-~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~l~~~--- 162 (215)
++.++|||+|||+|+||++|+++...|.+.+|..+ +|+.||||+.|.++.+.+|+||++| +||++|+||||++..
T Consensus 367 ~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~ 446 (516)
T PLN03195 367 SLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQ 446 (516)
T ss_pred HHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcC
Confidence 99999999999999999999999988877777665 8999999999999999999999999 999999999999532
Q ss_pred -CCCCccccCCCCCCCcccHHHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 163 -KHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 163 -~~~~~~~~Fg~G~~~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
..+..|+|||+|+|.|+|++||++|++++++.|+++|++++.++
T Consensus 447 ~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~ 491 (516)
T PLN03195 447 NASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPG 491 (516)
T ss_pred CCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCC
Confidence 34457999999999999999999999999999999999998643
No 20
>KOG0159|consensus
Probab=100.00 E-value=1.6e-46 Score=313.56 Aligned_cols=178 Identities=35% Similarity=0.637 Sum_probs=165.6
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCCchhhhcCcHHHHHHHhhhcCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESV-GFYDGPVTIQTLASMDYLERCIKESMRLY 106 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~-~~~~~~~~~~~~~~~~~l~a~i~E~lRl~ 106 (215)
++.+.+ ...++++++||.|||+.++.|++|+|++||++|++|++|+.++ ..++..++.+.+.++|||+|||+|++|++
T Consensus 312 l~~k~~-~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRly 390 (519)
T KOG0159|consen 312 LSRKDA-KANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLY 390 (519)
T ss_pred CCHHHH-HHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhcee
Confidence 444455 5558999999999999999999999999999999999999999 44467889999999999999999999999
Q ss_pred CCccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC---CCCCccccCCCCCCCcccHHH
Q psy2560 107 PPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF---KHPYAYVPFSTGPRNCIGQKV 183 (215)
Q Consensus 107 p~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~---~~~~~~~~Fg~G~~~C~G~~~ 183 (215)
|.++...|+..+|..++||.|||||.|.+..+.+.+||+.|++|++|.|+||+++. .+++.++|||.|+|+|+||+|
T Consensus 391 Pv~~~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~~~~~pF~~LPFGfG~R~C~GRRi 470 (519)
T KOG0159|consen 391 PVVPGNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPSTKTIHPFASLPFGFGPRMCLGRRI 470 (519)
T ss_pred ccccccccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhcccccCCCCCceecCCCCCccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999554 567889999999999999999
Q ss_pred HHHHHHHHHHHHHHhCeecccCC
Q psy2560 184 AMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 184 A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
|.+|+-++|+.++++|+++...+
T Consensus 471 AElEl~llLarllr~f~V~~~~~ 493 (519)
T KOG0159|consen 471 AELELHLLLARLLRNFKVEFLHE 493 (519)
T ss_pred HHHHHHHHHHHHHHhcceeecCC
Confidence 99999999999999999998774
No 21
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=1.7e-45 Score=319.22 Aligned_cols=178 Identities=21% Similarity=0.415 Sum_probs=162.3
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
.+++++ ...++++++||+|||+.+++|++++|++||++|+|+++|++++.+....++.++++++||+++||+|++|++|
T Consensus 285 l~~~~i-~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p 363 (504)
T PLN00110 285 LTLTNI-KALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLPKLPYLQAICKESFRKHP 363 (504)
T ss_pred CCHHHH-HHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhhcChHHHHHHHHHhcCCC
Confidence 455566 5668999999999999999999999999999999999999998434456889999999999999999999999
Q ss_pred Cccc-cceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCCC-------CCCccccCCCCCCCcc
Q psy2560 108 PVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFK-------HPYAYVPFSTGPRNCI 179 (215)
Q Consensus 108 ~~~~-~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~~-------~~~~~~~Fg~G~~~C~ 179 (215)
+++. ++|.+.+|+.++||.||+|+.|.++.+.+|+||++|+||++|+|+||++... ....++|||+|+|.|+
T Consensus 364 ~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~ 443 (504)
T PLN00110 364 STPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICA 443 (504)
T ss_pred CcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCC
Confidence 9997 7899999999999999999999999999999999999999999999995321 1247999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 180 GQKVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 180 G~~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
|++||..|++++++.|+++|++++.++
T Consensus 444 G~~~A~~e~~~~la~ll~~f~~~~~~~ 470 (504)
T PLN00110 444 GTRMGIVLVEYILGTLVHSFDWKLPDG 470 (504)
T ss_pred cHHHHHHHHHHHHHHHHHhceeecCCC
Confidence 999999999999999999999998765
No 22
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=2.3e-45 Score=315.46 Aligned_cols=183 Identities=22% Similarity=0.398 Sum_probs=165.7
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC--CCCCCchhhhcCcHHHHHHHhhhc
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESV-GF--YDGPVTIQTLASMDYLERCIKESM 103 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~-~~--~~~~~~~~~~~~~~~l~a~i~E~l 103 (215)
..+++++ ...++++++||+|||+.+++|++++|++||++|+|+++|++++ +. .+..++.+++.++||++|+++|++
T Consensus 259 ~l~~~ei-~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~Etl 337 (463)
T PLN02196 259 GLTDEQI-ADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETL 337 (463)
T ss_pred CCCHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHH
Confidence 4566777 5568999999999999999999999999999999999999987 32 235678999999999999999999
Q ss_pred CCCCCccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCCCCCCccccCCCCCCCcccHHH
Q psy2560 104 RLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFKHPYAYVPFSTGPRNCIGQKV 183 (215)
Q Consensus 104 Rl~p~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~~~~~~~~~Fg~G~~~C~G~~~ 183 (215)
|++|+++...|.+.+|+.++||.||||+.|.++.+.+|+||++|++|++|+||||+.. ..+..++|||.|+|.|+|+++
T Consensus 338 Rl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~-~~~~~~lpFG~G~r~C~G~~~ 416 (463)
T PLN02196 338 RVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVA-PKPNTFMPFGNGTHSCPGNEL 416 (463)
T ss_pred hcCCCccccceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCC-CCCCcccCcCCCCCCCchHHH
Confidence 9999999988999999999999999999999999999999999999999999999953 345689999999999999999
Q ss_pred HHHHHHHHHHHHHHhCeecccCCCCCcc
Q psy2560 184 AMMSQKILIAKILKRYVVGSTVKPKNLR 211 (215)
Q Consensus 184 A~~~~~~~l~~ll~~f~~~~~~~~~~~~ 211 (215)
|+++++++++.|+++|++++.+++.++.
T Consensus 417 A~~e~~~~la~ll~~f~~~~~~~~~~~~ 444 (463)
T PLN02196 417 AKLEISVLIHHLTTKYRWSIVGTSNGIQ 444 (463)
T ss_pred HHHHHHHHHHHHHHhcEEEEcCCCCceE
Confidence 9999999999999999999887654443
No 23
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=3.8e-45 Score=318.47 Aligned_cols=178 Identities=23% Similarity=0.397 Sum_probs=162.6
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
.+++++ ...++++++||+|||+.+++|++++|+.||++|+|+++|++++...+..++.+++.++||++++++|++|++|
T Consensus 310 ls~~~i-~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p 388 (534)
T PLN03018 310 VTPDEI-KAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHP 388 (534)
T ss_pred CCHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCC
Confidence 566666 5568999999999999999999999999999999999999998444567889999999999999999999999
Q ss_pred Ccccc-ceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC---------CCCCccccCCCCCCC
Q psy2560 108 PVPVI-ARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF---------KHPYAYVPFSTGPRN 177 (215)
Q Consensus 108 ~~~~~-~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~---------~~~~~~~~Fg~G~~~ 177 (215)
+++.. .|.+.+|+.++||.||||+.|.++.+++|+||++|++|++|+|+||++.. .....++|||+|+|.
T Consensus 389 ~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~ 468 (534)
T PLN03018 389 SAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRG 468 (534)
T ss_pred CccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCC
Confidence 99985 68999999999999999999999999999999999999999999999532 134679999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 178 CIGQKVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 178 C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
|||++||.++++++++.|+++|+|++..+
T Consensus 469 C~G~~lA~~e~~~~la~ll~~f~~~~~~~ 497 (534)
T PLN03018 469 CVGVKVGTIMMVMMLARFLQGFNWKLHQD 497 (534)
T ss_pred CccHHHHHHHHHHHHHHHHHhceEEeCCC
Confidence 99999999999999999999999997655
No 24
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=3.8e-45 Score=318.05 Aligned_cols=179 Identities=28% Similarity=0.492 Sum_probs=163.2
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCC
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLY 106 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~ 106 (215)
.++++++ ...++++++||+|||+.+++|++++|++||++++|+++|++++...+..++.+++.++||++++|+|++|++
T Consensus 292 ~l~~~~i-~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~ 370 (517)
T PLN02687 292 RITDTEI-KALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLH 370 (517)
T ss_pred CCCHHHH-HHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhhhCHHHHHHHHHHHccC
Confidence 3566666 445889999999999999999999999999999999999999844456788999999999999999999999
Q ss_pred CCccc-cceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC--------CCCCccccCCCCCCC
Q psy2560 107 PPVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF--------KHPYAYVPFSTGPRN 177 (215)
Q Consensus 107 p~~~~-~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~--------~~~~~~~~Fg~G~~~ 177 (215)
|+++. ++|.+.+|+.++|+.||+|+.|.++.+.+|+||++|++|++|+|+||++.. .....++|||.|+|.
T Consensus 371 p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~ 450 (517)
T PLN02687 371 PSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRI 450 (517)
T ss_pred CCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCC
Confidence 99997 799999999999999999999999999999999999999999999999532 134579999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 178 CIGQKVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 178 C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
|+|++||.+|++++++.|+++|++++.++
T Consensus 451 C~G~~~A~~e~~~~la~ll~~f~~~~~~~ 479 (517)
T PLN02687 451 CAGLSWGLRMVTLLTATLVHAFDWELADG 479 (517)
T ss_pred CCChHHHHHHHHHHHHHHHHhcceecCCC
Confidence 99999999999999999999999998755
No 25
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=4e-45 Score=317.78 Aligned_cols=178 Identities=21% Similarity=0.352 Sum_probs=161.8
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
.+++++ ...++++++||+|||+.+++|++++|++||++|+|+++|++++.+.++.++.+++.++||++++|+|++|++|
T Consensus 292 l~~~~i-~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~t~~~l~~L~yl~avi~EtlRl~p 370 (514)
T PLN03112 292 MDDVEI-KALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDLVHLNYLRCVVRETFRMHP 370 (514)
T ss_pred CCHHHH-HHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCCCCcCChhhhccCcHHHHHHHHHhccCC
Confidence 456666 5568899999999999999999999999999999999999998444556899999999999999999999999
Q ss_pred Cccc-cceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC--------CCCCccccCCCCCCCc
Q psy2560 108 PVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF--------KHPYAYVPFSTGPRNC 178 (215)
Q Consensus 108 ~~~~-~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~--------~~~~~~~~Fg~G~~~C 178 (215)
+++. +.|.+.+|+.++|+.||+|+.|.++.+.+|+||++|+||++|+|+||.... .....++|||+|+|.|
T Consensus 371 ~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C 450 (514)
T PLN03112 371 AGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKC 450 (514)
T ss_pred CcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCC
Confidence 9997 689999999999999999999999999999999999999999999986421 1245799999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhCeecccCC
Q psy2560 179 IGQKVAMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 179 ~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
||++||+++++++++.++++|+++++++
T Consensus 451 ~G~~~A~~e~~~~la~ll~~f~~~~~~~ 478 (514)
T PLN03112 451 PGAPLGVTMVLMALARLFHCFDWSPPDG 478 (514)
T ss_pred CcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 9999999999999999999999998755
No 26
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=5.6e-45 Score=313.39 Aligned_cols=177 Identities=28% Similarity=0.496 Sum_probs=162.1
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
++++++ ...++++++||+|||+.+++|++++|++||++|+|+++|++++.+.. .++.+++.++||++++++|+||++|
T Consensus 258 ls~~~i-~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~-~~~~~~l~~l~yl~a~i~EtlRl~p 335 (466)
T PLN02655 258 LTDEQL-MMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDE-RVTEEDLPNLPYLNAVFHETLRKYS 335 (466)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCC-CCCHHHHhcChHHHHHHHHHhccCC
Confidence 566666 55689999999999999999999999999999999999999984333 3899999999999999999999999
Q ss_pred Ccccc-ceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC---CCCCccccCCCCCCCcccHHH
Q psy2560 108 PVPVI-ARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF---KHPYAYVPFSTGPRNCIGQKV 183 (215)
Q Consensus 108 ~~~~~-~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~---~~~~~~~~Fg~G~~~C~G~~~ 183 (215)
+++.. +|.+.+|+.++||.||+|+.|+++.+++|+||++|+||++|+|+||++.. .....++|||+|+|.|||++|
T Consensus 336 ~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~ 415 (466)
T PLN02655 336 PVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQ 415 (466)
T ss_pred CcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcccCCcccccCCCCCCCCCCcHHH
Confidence 99985 79999999999999999999999999999999999999999999999543 234689999999999999999
Q ss_pred HHHHHHHHHHHHHHhCeecccCC
Q psy2560 184 AMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 184 A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
|..+++++++.||++|+|++.++
T Consensus 416 A~~~~~~~l~~ll~~f~~~~~~~ 438 (466)
T PLN02655 416 AMLIACMAIARLVQEFEWRLREG 438 (466)
T ss_pred HHHHHHHHHHHHHHHeEEEeCCC
Confidence 99999999999999999998755
No 27
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00 E-value=9.8e-45 Score=313.50 Aligned_cols=178 Identities=24% Similarity=0.426 Sum_probs=162.8
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CCCCchhhhcCcHHHHHHHhhhc
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFY----DGPVTIQTLASMDYLERCIKESM 103 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~----~~~~~~~~~~~~~~l~a~i~E~l 103 (215)
.+++++ ...++++++||+|||+.+++|++++|++||++|+|+++|++++... ...++++++.++||++++|+|++
T Consensus 283 ~~~~~i-~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~l 361 (490)
T PLN02302 283 LDDEEI-IDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETL 361 (490)
T ss_pred CCHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHH
Confidence 456666 4558899999999999999999999999999999999999988221 12378899999999999999999
Q ss_pred CCCCCccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCCCCCCccccCCCCCCCcccHHH
Q psy2560 104 RLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFKHPYAYVPFSTGPRNCIGQKV 183 (215)
Q Consensus 104 Rl~p~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~~~~~~~~~Fg~G~~~C~G~~~ 183 (215)
|++|+++...|.+.+|+.++|+.||+|+.|.++.+.+|+||++|+||++|+|+||++....+..++|||+|+|.|+|++|
T Consensus 362 Rl~p~~~~~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~~~~~~~~pFG~G~r~C~G~~l 441 (490)
T PLN02302 362 RLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYTPKAGTFLPFGLGSRLCPGNDL 441 (490)
T ss_pred HhCCCcccchhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCCCCCCCccCCCCCCcCCCcHHH
Confidence 99999998889999999999999999999999999999999999999999999999765566789999999999999999
Q ss_pred HHHHHHHHHHHHHHhCeecccCC
Q psy2560 184 AMMSQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 184 A~~~~~~~l~~ll~~f~~~~~~~ 206 (215)
|.+|++++++.|+++|++++.++
T Consensus 442 A~~e~~~~la~ll~~f~~~~~~~ 464 (490)
T PLN02302 442 AKLEISIFLHHFLLGYRLERLNP 464 (490)
T ss_pred HHHHHHHHHHHHHhcCeeEEcCC
Confidence 99999999999999999998754
No 28
>PLN02936 epsilon-ring hydroxylase
Probab=100.00 E-value=1.3e-43 Score=306.46 Aligned_cols=178 Identities=35% Similarity=0.584 Sum_probs=157.8
Q ss_pred cchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
.+++++ ...++++++||+|||+++++|++++|++||++|+++++|++++... ..++++++.++|||+|||+|++|++|
T Consensus 274 ~~~~~i-~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~-~~~~~~~~~~lpyl~avi~EtlRl~p 351 (489)
T PLN02936 274 VSSVQL-RDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQG-RPPTYEDIKELKYLTRCINESMRLYP 351 (489)
T ss_pred CCHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC-CCCCHHHHhhCHHHHHHHHHhhhcCC
Confidence 456666 5558999999999999999999999999999999999999988322 35788999999999999999999999
Q ss_pred Cccccc-eeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC------CCCCccccCCCCCCCccc
Q psy2560 108 PVPVIA-RQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF------KHPYAYVPFSTGPRNCIG 180 (215)
Q Consensus 108 ~~~~~~-r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~------~~~~~~~~Fg~G~~~C~G 180 (215)
+++... |.+..++.++|+.||+|+.|+++.+.+|+||++|+||++|+|+||+... .....++|||.|+|.|||
T Consensus 352 ~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G 431 (489)
T PLN02936 352 HPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVG 431 (489)
T ss_pred CcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCC
Confidence 998754 4456677779999999999999999999999999999999999999432 124579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCeecccCCC
Q psy2560 181 QKVAMMSQKILIAKILKRYVVGSTVKP 207 (215)
Q Consensus 181 ~~~A~~~~~~~l~~ll~~f~~~~~~~~ 207 (215)
++||+++++++++.|+++|+++++++.
T Consensus 432 ~~la~~~~~~~la~ll~~f~~~~~~~~ 458 (489)
T PLN02936 432 DQFALLEAIVALAVLLQRLDLELVPDQ 458 (489)
T ss_pred HHHHHHHHHHHHHHHHHhCeEEecCCC
Confidence 999999999999999999999987653
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00 E-value=2.8e-43 Score=302.86 Aligned_cols=180 Identities=19% Similarity=0.312 Sum_probs=162.8
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CCCCCchhhhcCcHHHHHHHhhhc
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGF---YDGPVTIQTLASMDYLERCIKESM 103 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~---~~~~~~~~~~~~~~~l~a~i~E~l 103 (215)
..+++++ ...++++++||+|||+.+++|++++|++||++++++++|++.+.. ....++.+++.++||++++++|++
T Consensus 262 ~~~~~ei-~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtL 340 (472)
T PLN02987 262 GFSDEEI-VDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETL 340 (472)
T ss_pred CCCHHHH-HHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHH
Confidence 3566666 555889999999999999999999999999999999999998721 234578899999999999999999
Q ss_pred CCCCCccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC---CCCCccccCCCCCCCccc
Q psy2560 104 RLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF---KHPYAYVPFSTGPRNCIG 180 (215)
Q Consensus 104 Rl~p~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~---~~~~~~~~Fg~G~~~C~G 180 (215)
|++|+++.+.|.+.+|+.++||.||+|+.|.++.+.+|+||++|++|++|+|+||++.. .....++|||.|+|.|||
T Consensus 341 Rl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~~~~~~~~l~FG~G~r~C~G 420 (472)
T PLN02987 341 RVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPG 420 (472)
T ss_pred HccCCcCCccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCCCCCCcceECCCCCCcCCCc
Confidence 99999988889999999999999999999999999999999999999999999999542 234679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCeecccCCC
Q psy2560 181 QKVAMMSQKILIAKILKRYVVGSTVKP 207 (215)
Q Consensus 181 ~~~A~~~~~~~l~~ll~~f~~~~~~~~ 207 (215)
++||..|++++++.|+++|++++.++.
T Consensus 421 ~~lA~~e~~~~la~ll~~f~~~~~~~~ 447 (472)
T PLN02987 421 YELARVALSVFLHRLVTRFSWVPAEQD 447 (472)
T ss_pred HHHHHHHHHHHHHHHHhceEEEECCCC
Confidence 999999999999999999999987654
No 30
>KOG0684|consensus
Probab=100.00 E-value=1.9e-43 Score=289.51 Aligned_cols=184 Identities=30% Similarity=0.516 Sum_probs=165.2
Q ss_pred chhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCCchhhhcCcHHHHHHHhhhcCCCC
Q psy2560 29 AEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESV-GFYDGPVTIQTLASMDYLERCIKESMRLYP 107 (215)
Q Consensus 29 ~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~-~~~~~~~~~~~~~~~~~l~a~i~E~lRl~p 107 (215)
+.|+.++-.++.+++||..||+.+..|++++|++||++++++++|+.++ ++....++++.++++|.|++||+|||||+|
T Consensus 269 ~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~ 348 (486)
T KOG0684|consen 269 TTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHP 348 (486)
T ss_pred CcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCC
Confidence 3444447778899999999999999999999999999999999999999 555566999999999999999999999999
Q ss_pred CccccceeeccCcccCC----EEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCCC--------CCCccccCCCCC
Q psy2560 108 PVPVIARQLYAPLKTPN----MLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFK--------HPYAYVPFSTGP 175 (215)
Q Consensus 108 ~~~~~~r~~~~~~~i~g----~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~~--------~~~~~~~Fg~G~ 175 (215)
|.+.+.|.+.+|.++.+ |.||+|..|.++...+|+||++|++|+.|+|+||++.+. -.+.+||||+|.
T Consensus 349 p~~~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr 428 (486)
T KOG0684|consen 349 PAHSLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGR 428 (486)
T ss_pred chhhHHHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCc
Confidence 99999999999999876 999999999999999999999999999999999994431 234579999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhCeecccCC-CCCccc
Q psy2560 176 RNCIGQKVAMMSQKILIAKILKRYVVGSTVK-PKNLRL 212 (215)
Q Consensus 176 ~~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~-~~~~~~ 212 (215)
|.|||+.||.++++.++..+|++||+++.++ ..+++.
T Consensus 429 ~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~~P~~d~ 466 (486)
T KOG0684|consen 429 HRCPGRSFAYLEIKQFISLLLRHFDLELIDGPFPEVDY 466 (486)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHcceeecCCCCCCCCH
Confidence 9999999999999999999999999999984 444443
No 31
>PLN02648 allene oxide synthase
Probab=100.00 E-value=3.6e-39 Score=276.92 Aligned_cols=185 Identities=22% Similarity=0.316 Sum_probs=156.6
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhC-CCCCCCchhhhcCcHHHHHHHhhhcC
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPE-IQEKIVQEAESVG-FYDGPVTIQTLASMDYLERCIKESMR 104 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~-~~~~l~~E~~~~~-~~~~~~~~~~~~~~~~l~a~i~E~lR 104 (215)
.++++++.+..++.+.+++++|++++++|++++|++||+ +++++++|++.+. ..++.++.+++.++||++++++|++|
T Consensus 266 ~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLR 345 (480)
T PLN02648 266 GISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALR 345 (480)
T ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHh
Confidence 367777755544334566777888899999999999985 9999999999983 23456899999999999999999999
Q ss_pred CCCCccccceeeccCcccC----CEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCC-CCCCccccC--------
Q psy2560 105 LYPPVPVIARQLYAPLKTP----NMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKF-KHPYAYVPF-------- 171 (215)
Q Consensus 105 l~p~~~~~~r~~~~~~~i~----g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~-~~~~~~~~F-------- 171 (215)
++|+++...|.+.+|+.++ ||.||+|+.|+++.+.+|+||++|++|++|+|+||++.. .....+++|
T Consensus 346 l~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~~~~~~~f~~g~~~~~ 425 (480)
T PLN02648 346 IEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEKLLKYVFWSNGRETES 425 (480)
T ss_pred hcCCcccccceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccccccccccCCCcccCC
Confidence 9999999889999999996 799999999999999999999999999999999998532 222344554
Q ss_pred -CCCCCCcccHHHHHHHHHHHHHHHHHhCe-ecccCCCCCcc
Q psy2560 172 -STGPRNCIGQKVAMMSQKILIAKILKRYV-VGSTVKPKNLR 211 (215)
Q Consensus 172 -g~G~~~C~G~~~A~~~~~~~l~~ll~~f~-~~~~~~~~~~~ 211 (215)
|+|+|.|+|++||+.|++++++.|+++|+ |++.++...+-
T Consensus 426 ~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~~~~~ 467 (480)
T PLN02648 426 PTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDTSGLG 467 (480)
T ss_pred CCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCccccc
Confidence 56779999999999999999999999998 99877655443
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-39 Score=273.77 Aligned_cols=157 Identities=32% Similarity=0.638 Sum_probs=147.3
Q ss_pred CcchhhchhhhhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCchhhhcCcHHHHHHHhhhcCCC
Q psy2560 27 HPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLY 106 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~~~~~~~~~~~~~~~~~~~l~a~i~E~lRl~ 106 (215)
.++++++ ...++++++||+|||+++++|+++.|++||+.++++++|.+. +|+.++++|+||++
T Consensus 231 ~lsd~Ei-~~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~----------------~~~~~~v~E~LR~~ 293 (411)
T COG2124 231 RLSDDEI-RDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR----------------PLLEAVVEETLRLY 293 (411)
T ss_pred cCCHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch----------------HHHHHHHHHHHHhC
Confidence 4678888 555889999999999999999999999999999999988753 78899999999999
Q ss_pred CCccccceeeccCcccCCEEeCCCcEEEEeccccccCCCCCCCCCCcccCCCCCCCCCCCccccCCCCCCCcccHHHHHH
Q psy2560 107 PPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFKHPYAYVPFSTGPRNCIGQKVAMM 186 (215)
Q Consensus 107 p~~~~~~r~~~~~~~i~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~l~~~~~~~~~~~Fg~G~~~C~G~~~A~~ 186 (215)
|+++...|.+.+|+.++|+.||+|+.|+++.+.+||||++|++|++|+|+||. +.++|||+|+|.|+|..||++
T Consensus 294 ppv~~~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~------~~~l~FG~G~H~ClG~~lA~~ 367 (411)
T COG2124 294 PPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN------NAHLPFGGGPHRCLGAALARL 367 (411)
T ss_pred CchhccceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC------CCCcCCCCCCccccCHHHHHH
Confidence 99999899999999999999999999999999999999999999999999985 789999999999999999999
Q ss_pred HHHHHHHHHHHhCeecccCC
Q psy2560 187 SQKILIAKILKRYVVGSTVK 206 (215)
Q Consensus 187 ~~~~~l~~ll~~f~~~~~~~ 206 (215)
|++++++.++++|++....+
T Consensus 368 E~~~~l~~ll~r~~~~~~~~ 387 (411)
T COG2124 368 ELKVALAELLRRFPLLLLAE 387 (411)
T ss_pred HHHHHHHHHHHhCchhhcCC
Confidence 99999999999999887665
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=61.47 E-value=3.1 Score=31.97 Aligned_cols=42 Identities=10% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHhhhcCCCCCccccceeeccCcccCCEEeCCCcEEEE
Q psy2560 93 DYLERCIKESMRLYPPVPVIARQLYAPLKTPNMLVPAGCSIFI 135 (215)
Q Consensus 93 ~~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~Ip~g~~v~~ 135 (215)
....|||.|+.-+... ..+.-+..+|+.++|..||+|+.+.-
T Consensus 53 n~I~A~V~~~qtv~~G-s~vrlRLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 53 NTIRAVVDGTQTVVDG-SRVRLRLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred CeEEEEEecceEEeCC-CEEEEEEcCceEECCEEeCCCCEEEE
Confidence 3455888888755422 22334457899999999999998775
No 34
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=50.74 E-value=17 Score=21.84 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=16.0
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q psy2560 55 WTLYALGHHPEIQEKIVQE 73 (215)
Q Consensus 55 ~~l~~L~~~p~~~~~l~~E 73 (215)
-++.||.+||++.+++.+.
T Consensus 4 ~iV~YLv~nPevl~kl~~g 22 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKEG 22 (57)
T ss_pred HHHHHHHHChHHHHHHHcC
Confidence 4678999999999999753
No 35
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=41.47 E-value=26 Score=25.15 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=16.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHh
Q psy2560 176 RNCIGQKVAMMSQKILIAKILKR 198 (215)
Q Consensus 176 ~~C~G~~~A~~~~~~~l~~ll~~ 198 (215)
-.|.|++||...+-.++..++..
T Consensus 18 yN~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 18 YNCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp EETTS----HHHHHHHHHHHHHS
T ss_pred ecccchHHHHHHHHHHHHHHhcC
Confidence 36999999999999999999874
No 36
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=38.14 E-value=22 Score=23.18 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCeecccCCC
Q psy2560 186 MSQKILIAKILKRYVVGSTVKP 207 (215)
Q Consensus 186 ~~~~~~l~~ll~~f~~~~~~~~ 207 (215)
.-|+-++.++|+-|||.+.+-|
T Consensus 60 ~~IrdAVsqVLkGYDWtLVPmP 81 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVPMP 81 (84)
T ss_pred HHHHHHHHHHhccCCceeeecc
Confidence 3467889999999999997654
No 37
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=36.93 E-value=14 Score=31.71 Aligned_cols=20 Identities=15% Similarity=0.617 Sum_probs=16.1
Q ss_pred ccCcccCCEEeCCCcEEEEe
Q psy2560 117 YAPLKTPNMLVPAGCSIFIN 136 (215)
Q Consensus 117 ~~~~~i~g~~Ip~g~~v~~~ 136 (215)
.+|+.++|..||+||.|+..
T Consensus 279 le~~~v~~~~ipkgt~l~g~ 298 (410)
T TIGR03779 279 LEPIQAGDLVIPKGTVLYGT 298 (410)
T ss_pred cCceeeCCEEecCCCEEEEE
Confidence 46777889999999987654
No 38
>KOG3506|consensus
Probab=30.34 E-value=25 Score=20.82 Aligned_cols=10 Identities=40% Similarity=0.949 Sum_probs=8.5
Q ss_pred cCCCCCCCcc
Q psy2560 170 PFSTGPRNCI 179 (215)
Q Consensus 170 ~Fg~G~~~C~ 179 (215)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6899999884
No 39
>PF04798 Baculo_19: Baculovirus 19 kDa protein conserved region; InterPro: IPR006883 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf96; it is a family of uncharacterised viral proteins.
Probab=28.84 E-value=8.3 Score=27.86 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=10.0
Q ss_pred CccccCCCCCCCcccHHHH
Q psy2560 166 YAYVPFSTGPRNCIGQKVA 184 (215)
Q Consensus 166 ~~~~~Fg~G~~~C~G~~~A 184 (215)
+.++- |.+.|.||+..+|
T Consensus 58 YyYle-gss~~~CP~nE~a 75 (146)
T PF04798_consen 58 YYYLE-GSSSVFCPPNEFA 75 (146)
T ss_pred EEEEe-ccccccCCCCceE
Confidence 34455 5666666655444
No 40
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=27.36 E-value=65 Score=22.65 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=17.4
Q ss_pred CCCcccHHHHHHHHHHHHHHHHH
Q psy2560 175 PRNCIGQKVAMMSQKILIAKILK 197 (215)
Q Consensus 175 ~~~C~G~~~A~~~~~~~l~~ll~ 197 (215)
.|.|||-.++......++..+-.
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHTS
T ss_pred CCcCccHHHHHHHHHHHHHHcCC
Confidence 38999999999999988877643
No 41
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=27.29 E-value=1.1e+02 Score=25.57 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=19.1
Q ss_pred CCCccccCCCCCCCcccHHHHHHHHHHHH
Q psy2560 164 HPYAYVPFSTGPRNCIGQKVAMMSQKILI 192 (215)
Q Consensus 164 ~~~~~~~Fg~G~~~C~G~~~A~~~~~~~l 192 (215)
++++++-||-+ +-.|+++|+ |+|.++
T Consensus 326 spYs~l~~~~p--ms~GrRIA~-EIk~A~ 351 (361)
T COG1759 326 SPYSNLYWGEP--MSTGRRIAR-EIKEAI 351 (361)
T ss_pred CcchhhhcCCC--cchhhHHHH-HHHHHH
Confidence 35666667644 788999997 888765
No 42
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=26.95 E-value=53 Score=17.01 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.6
Q ss_pred CCCCccccCCCCCCCcc
Q psy2560 163 KHPYAYVPFSTGPRNCI 179 (215)
Q Consensus 163 ~~~~~~~~Fg~G~~~C~ 179 (215)
....+|+++.+..|.|.
T Consensus 15 p~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 15 PRDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCCcEeCCCCccccCc
Confidence 35678999998888884
No 43
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=26.17 E-value=93 Score=17.20 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=14.5
Q ss_pred HHHHHHHhcCHHHHHHHH
Q psy2560 54 SWTLYALGHHPEIQEKIV 71 (215)
Q Consensus 54 ~~~l~~L~~~p~~~~~l~ 71 (215)
.|.+.-++++|+++..+.
T Consensus 13 l~gl~~~l~DpdvqrgL~ 30 (42)
T PF07849_consen 13 LFGLLRALRDPDVQRGLG 30 (42)
T ss_pred HHHHHHHHcCHHHHHHHH
Confidence 467788899999998764
No 44
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=22.87 E-value=44 Score=25.06 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=23.6
Q ss_pred CCcccCCCC----CCCCCCCccccCCCCCCCcccH
Q psy2560 151 LEFNPDRFL----EKFKHPYAYVPFSTGPRNCIGQ 181 (215)
Q Consensus 151 ~~f~p~R~l----~~~~~~~~~~~Fg~G~~~C~G~ 181 (215)
-+|+|+||- .-..+.-..+-|..|+=.|-|.
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 479999985 2223456788999999999985
No 45
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=22.25 E-value=77 Score=22.30 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=17.8
Q ss_pred eeccCcccCCEEeCCCcEEEEe
Q psy2560 115 QLYAPLKTPNMLVPAGCSIFIN 136 (215)
Q Consensus 115 ~~~~~~~i~g~~Ip~g~~v~~~ 136 (215)
++..|..+.|..||+|+.|+.-
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~~ 93 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVGV 93 (122)
T ss_pred ecCCCcccCCeeecceEEEEEE
Confidence 3456889999999999988543
No 46
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=22.12 E-value=53 Score=25.45 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=17.7
Q ss_pred cccccCCCCCCCCCCcccCC
Q psy2560 138 FEQHRIPEYFPNPLEFNPDR 157 (215)
Q Consensus 138 ~~~~~d~~~~~~p~~f~p~R 157 (215)
+.-+.|+..|.|...|+|.|
T Consensus 192 ~~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 192 WPDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCCCcccccCccccCCCC
Confidence 45589999999999999988
No 47
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=21.79 E-value=29 Score=26.01 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=24.3
Q ss_pred CCcccCCCC----CCCCCCCccccCCCCCCCcccHH
Q psy2560 151 LEFNPDRFL----EKFKHPYAYVPFSTGPRNCIGQK 182 (215)
Q Consensus 151 ~~f~p~R~l----~~~~~~~~~~~Fg~G~~~C~G~~ 182 (215)
.+|+|++|- .-..+....+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 478999985 22245567899999999999954
No 48
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=21.26 E-value=1.2e+02 Score=16.67 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHh
Q psy2560 64 PEIQEKIVQEAESV 77 (215)
Q Consensus 64 p~~~~~l~~E~~~~ 77 (215)
.++.+.+|.|++.+
T Consensus 10 qEIL~EvrkEl~K~ 23 (40)
T PF08776_consen 10 QEILEEVRKELQKV 23 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777788887766
No 49
>PHA03162 hypothetical protein; Provisional
Probab=20.95 E-value=57 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=18.1
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHH
Q psy2560 172 STGPRNCIGQKVAMMSQKILIAKI 195 (215)
Q Consensus 172 g~G~~~C~G~~~A~~~~~~~l~~l 195 (215)
++|.+.|||+...+-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999887777766666555
No 50
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=20.69 E-value=62 Score=19.56 Aligned_cols=6 Identities=50% Similarity=1.376 Sum_probs=4.5
Q ss_pred ccCCCC
Q psy2560 154 NPDRFL 159 (215)
Q Consensus 154 ~p~R~l 159 (215)
||||||
T Consensus 44 DPERWL 49 (59)
T PF08492_consen 44 DPERWL 49 (59)
T ss_pred CccccC
Confidence 677777
No 51
>PF14129 DUF4296: Domain of unknown function (DUF4296)
Probab=20.12 E-value=1.7e+02 Score=18.88 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=33.3
Q ss_pred hhhhhhccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q psy2560 37 PVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAES 76 (215)
Q Consensus 37 ~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~E~~~ 76 (215)
.....++--+..++..+.-.+.+-++||+..+++.+.+..
T Consensus 37 ~~~~~I~kKy~Ids~~f~~S~~YY~~~p~~~~~Iy~~V~~ 76 (87)
T PF14129_consen 37 AYYQYIFKKYGIDSAQFDSSMVYYSRNPEEYEKIYDKVIE 76 (87)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3556778888889999999999999999999888887654
Done!