RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2560
(215 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 176 bits (449), Expect = 3e-53
Identities = 65/159 (40%), Positives = 101/159 (63%), Gaps = 4/159 (2%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMR 104
G DTT+ SW LY L HPE+QEK+ +E + V T L +M YL+ IKE++R
Sbjct: 273 GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLR 332
Query: 105 LYPPVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEK-- 161
L+P VP+ + R++ P L+P G + +N++ HR PE FPNP EF+P+RFL++
Sbjct: 333 LHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENG 392
Query: 162 -FKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
F+ +A++PF GPRNC+G+++A M K+ +A +L+ +
Sbjct: 393 KFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNF 431
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 127 bits (321), Expect = 6e-35
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 22/155 (14%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMR 104
GH+TTA +W LYAL HP+ K+ E + LE ++E++R
Sbjct: 248 GHETTANALAWALYALLRHPDQLAKLRAEPD----------------RPLLEAVVEETLR 291
Query: 105 LYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFKH 164
LYPPVP+ R ++ +PAG + +++ +R PE FP+P EF+P+RF
Sbjct: 292 LYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERF------ 345
Query: 165 PYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
A++PF GP C+G +A + K+ +A++L+R+
Sbjct: 346 NNAHLPFGGGPHRCLGAALARLELKVALAELLRRF 380
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 127 bits (320), Expect = 3e-34
Identities = 64/179 (35%), Positives = 96/179 (53%), Gaps = 15/179 (8%)
Query: 44 TGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESM 103
GH+TTA + +WTL L +P Q+K+ E V ++ L+ + L I ES+
Sbjct: 327 AGHETTALLLTWTLMLLASNPTWQDKVRAEVAEV-CGGETPSVDHLSKLTLLNMVINESL 385
Query: 104 RLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYF-PNPLEFNPDRFLEK- 161
RLYPP ++ R + +K ++ +P G SI+I V H E + + EFNPDRF +
Sbjct: 386 RLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRP 445
Query: 162 FKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY------------VVGSTVKPK 208
F ++PF+ GPRNCIGQ AMM KI++A ++ ++ VV T+KPK
Sbjct: 446 FAPGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYRHAPVVVLTIKPK 504
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 118 bits (298), Expect = 2e-31
Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMR 104
GH+TT V +WTLY L +PE K +E + V P T + + + YL RCI ESMR
Sbjct: 290 GHETTGSVLTWTLYLLSKNPEALRKAQEELDRV-LQGRPPTYEDIKELKYLTRCINESMR 348
Query: 105 LYPPVPVIARQLYAPLKTP-NMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFK 163
LYP PV+ R+ P V AG I I+V+ HR PE + EF P+RF
Sbjct: 349 LYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGP 408
Query: 164 HP------YAYVPFSTGPRNCIGQKVAMMSQKILIAKILKR 198
P + Y+PFS GPR C+G + A++ + +A +L+R
Sbjct: 409 VPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQR 449
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 114 bits (286), Expect = 1e-29
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 13/162 (8%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMR 104
G DT+A W + L ++PEIQEK E +S V + S Y IKE++R
Sbjct: 295 GVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLLSDRQSTPYTVAIIKETLR 354
Query: 105 LYPPVPVIARQLYAPLKTPN-------MLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDR 157
P P P T N +P I IN + R +YF NP +F+P R
Sbjct: 355 YKPVSPF-----GLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSR 409
Query: 158 FLEKFKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
FL A++PFS GPRNC+GQ+ A + + I+ +
Sbjct: 410 FLNP-DSNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNF 450
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 99.6 bits (248), Expect = 3e-24
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 7/161 (4%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMR 104
GH+T+A V +WT Y L P + K+ +E +SV D TI+ + + Y R I ES+R
Sbjct: 403 GHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSV-LGDRFPTIEDMKKLKYTTRVINESLR 461
Query: 105 LYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFKH 164
LYP PV+ R+ + G IFI+V+ HR P+++ + +FNP+R+ +
Sbjct: 462 LYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPN 521
Query: 165 P------YAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
P ++Y+PF GPR C+G A + A +++R+
Sbjct: 522 PNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRF 562
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 92.2 bits (229), Expect = 8e-22
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 9/145 (6%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMR 104
G DTT+ W + L HP+I +K +E ++V D V+ L + YL+ IKE+ R
Sbjct: 309 GTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFR 368
Query: 105 LYPPVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFK 163
L+P P+ + R + +P G ++ +NV+ R PE +P+PLEF PDRFL +
Sbjct: 369 LHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGE 428
Query: 164 HP--------YAYVPFSTGPRNCIG 180
H + +PF G R C G
Sbjct: 429 HAGVDVKGSDFELIPFGAGRRICAG 453
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 89.8 bits (223), Expect = 5e-21
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 26 SHPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESV-GFYDGPV 84
+H +EQ + VW DTT W +Y L +P+ QE++ +E V G D V
Sbjct: 256 THLTDEQL-MMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCG--DERV 312
Query: 85 TIQTLASMDYLERCIKESMRLYPPVPVI-ARQLYAPLKTPNMLVPAGCSIFINVFEQHRI 143
T + L ++ YL E++R Y PVP++ R ++ +PAG I IN++ +
Sbjct: 313 TEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMD 372
Query: 144 PEYFPNPLEFNPDRFL-EKFKHP--YAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
+ + NP E++P+RFL EK++ Y + F G R C G AM+ + IA++++ +
Sbjct: 373 KKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEF 431
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 83.5 bits (206), Expect = 8e-19
Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 21/183 (11%)
Query: 28 PAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQ 87
P +++F ++S G DTT+ +W + L HP++ KI E + +D +
Sbjct: 296 PKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTK--FDN----E 349
Query: 88 TLASMDYLERCIKESMRLYPPVPVIARQLYAPLKTPNML-----VPAGCSIFINVFEQHR 142
L + YL + ESMRLYPP+P + AP K P++L V A I I ++ R
Sbjct: 350 DLEKLVYLHAALSESMRLYPPLPFNHK---APAK-PDVLPSGHKVDAESKIVICIYALGR 405
Query: 143 IPEYF-PNPLEFNPDRFLE-----KFKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKIL 196
+ + + L+F P+R++ + + Y ++ F++GPR C+G+ +A++ KI+ +I+
Sbjct: 406 MRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEII 465
Query: 197 KRY 199
K Y
Sbjct: 466 KNY 468
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 81.7 bits (202), Expect = 4e-18
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 47 DTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLY 106
+TT W + L +HPEIQ+K+ E ++V VT + YL+ +KE++RL+
Sbjct: 307 ETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGNQVTEPDTHKLPYLQAVVKETLRLH 366
Query: 107 PPVPVIARQL-YAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFKHP 165
+P++ + K +PA I +N + PE + NP EF P+RFLE+
Sbjct: 367 MAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKV 426
Query: 166 YA------YVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
A ++PF G R+C G +A+ I++ ++++ +
Sbjct: 427 EANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNF 466
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 80.9 bits (200), Expect = 7e-18
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 8/169 (4%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGP----VTIQTLASMDYLERCIK 100
GH+++ + W L HPE+ +K E E + P +T++ + M+YL + I
Sbjct: 299 GHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVID 358
Query: 101 ESMRLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLE 160
E++RL + R+ ++ +P G + + H PE +PNP EF+P R+
Sbjct: 359 ETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDN 418
Query: 161 KFKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRYVVGSTVKPKN 209
++PF G R C G +A K+ I+ L +++G ++ N
Sbjct: 419 YTPKAGTFLPFGLGSRLCPGNDLA----KLEISIFLHHFLLGYRLERLN 463
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 77.9 bits (192), Expect = 9e-17
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 27/181 (14%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQE--------------------AESVGFYDGPV 84
G DTTA SW +Y + +P + EK+ E + V + G +
Sbjct: 304 GRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLL 363
Query: 85 TIQTLASMDYLERCIKESMRLYPPVPVIARQLYAPLKTPN-MLVPAGCSIFINVFEQHRI 143
T +L + YL I E++RLYP VP + + P+ V AG + + R+
Sbjct: 364 TYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRM 423
Query: 144 PEYF-PNPLEFNPDRFLEK--FKH--PYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKR 198
+ P+ F P+R+++ F++ P+ + F GPR C+G+ A + K+ +A +L R
Sbjct: 424 EYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALA-LLCR 482
Query: 199 Y 199
+
Sbjct: 483 F 483
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 78.0 bits (192), Expect = 9e-17
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 7/158 (4%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQE-AESVGFYDGPVTIQTLASMDYLERCIKESM 103
G +T A W + L PE +++ QE A+ VG + V L + YL+ +KE++
Sbjct: 316 GTETVASAIEWAMAELMKSPEDLKRVQQELADVVGL-NRRVEESDLEKLTYLKCTLKETL 374
Query: 104 RLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEK-- 161
RL+PP+P++ + + +P + IN + R + +P F P RFL+
Sbjct: 375 RLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGV 434
Query: 162 --FK-HPYAYVPFSTGPRNCIGQKVAMMSQKILIAKIL 196
FK + ++PF +G R+C G ++ + + + +A +L
Sbjct: 435 PDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLL 472
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 77.4 bits (191), Expect = 1e-16
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESV-GFYDGPVTIQTLASMDYLERCIKESM 103
G DT A + + L HPE+ I +EA+ V G + + + M YL + ESM
Sbjct: 305 GRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMHYLHAALYESM 364
Query: 104 RLYPPVPVIARQLYAPLKTPN-MLVPAGCSIFINVFEQHRIPEYF-PNPLEFNPDRFLE- 160
RL+PPV ++ P+ V G + + + R+ + P+ LEF P+R+L+
Sbjct: 365 RLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKN 424
Query: 161 -KF--KHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY----VVGSTVKPK 208
F ++P+ Y F G R C+G+++A+M K + +++R+ V S P+
Sbjct: 425 GVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPR 479
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 75.6 bits (186), Expect = 5e-16
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 43 ATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCI-KE 101
A DT+A W + + +P + KI +E +SV + V L ++YL RC+ +E
Sbjct: 306 AAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDLVHLNYL-RCVVRE 364
Query: 102 SMRLYPPVP-VIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRF-- 158
+ R++P P +I + +PA +FIN R + + + EF P+R
Sbjct: 365 TFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWP 424
Query: 159 -----LEKFKHP-YAYVPFSTGPRNCIG 180
+E P + +PFS G R C G
Sbjct: 425 AEGSRVEISHGPDFKILPFSAGKRKCPG 452
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 74.3 bits (182), Expect = 2e-15
Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMR 104
G DT A V W + L +PE +K E +V G V+ + + ++ YL+ IKES+R
Sbjct: 300 GTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYVSEEDIPNLPYLKAVIKESLR 359
Query: 105 LYPPVPVIA-RQLYAPLKTPNMLVPAGCSIFINVFEQHR-IPEYFPNPLEFNPDRFLEKF 162
L P +P++ R+ A K +PA I +N + R + NP EF P+RF+++
Sbjct: 360 LEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEH 419
Query: 163 K------HPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY--VVGSTVKPKNLRL 212
K + +PF +G R C + + +I A +L ++ + +KP+++++
Sbjct: 420 KGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKM 477
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 72.1 bits (176), Expect = 7e-15
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGP--VTIQTLASMDYLERCIKES 102
G DT A W + L +P++ +K E G VT + ++ Y +KE+
Sbjct: 301 GTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKET 360
Query: 103 MRLYPPVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRI-PEYFPNPLEFNPDRFLE 160
+R+ P +P+ I R K +PAG ++ +N + R E+ PNP EF P+RFLE
Sbjct: 361 LRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLE 420
Query: 161 K---FKHP-YAYVPFSTGPRNCIGQKVAMMSQKILIAKIL 196
K FK Y ++PF +G R C G ++ ++ A +L
Sbjct: 421 KEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLL 460
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 67.3 bits (164), Expect = 3e-13
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 47 DTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLY 106
D A WTL + +PEI K ++E + V D V + +++YL+ C +E+ R++
Sbjct: 328 DNPANNMEWTLGEMLKNPEILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIH 387
Query: 107 PPV----PVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEK- 161
P P +ARQ +P G I + R P+ + +PL + P+R L+
Sbjct: 388 PSAHYVPPHVARQ---DTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGD 444
Query: 162 --------FKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
+ +V FSTG R C+G KV + +++A+ L+ +
Sbjct: 445 GITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGF 490
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 66.9 bits (163), Expect = 5e-13
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 47 DTTAGVASWTLYALGHHPEIQEKIVQEAESV---GFYDGPVTIQTLASMDYLERCIKESM 103
DTTA V +W L L +P + E + +E ++ +T + M R I+E++
Sbjct: 278 DTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETL 337
Query: 104 RLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEKFK 163
R+ + R+ ++ L+P G + H + F +P +F+P RF E
Sbjct: 338 RVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRF-EVAP 396
Query: 164 HPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
P ++PF G +C G ++A + +LI + +Y
Sbjct: 397 KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKY 432
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 66.0 bits (161), Expect = 9e-13
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 43 ATGHDTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKES 102
G DT++ V W+L + +P I ++ +E + V + + L + YL+ KES
Sbjct: 299 TAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLPKLPYLQAICKES 358
Query: 103 MRLYPPVPV-IARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFL-E 160
R +P P+ + R + +P + +N++ R P+ + NP EF P+RFL E
Sbjct: 359 FRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSE 418
Query: 161 KFK------HPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRYVVGSTV 205
K + + +PF G R C G ++ + +L Y++G+ V
Sbjct: 419 KNAKIDPRGNDFELIPFGAGRRICAGTRMGI---------VLVEYILGTLV 460
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 59.6 bits (144), Expect = 2e-10
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAES-VGFYDGPVTIQTLASMDYLERCIKESM 103
G DTT+ W + L +P IQ K+ E ++ G V+ + + M YL+ + E +
Sbjct: 318 GTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGL 377
Query: 104 RLYPPVP-VIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLE-- 160
R +PP V+ + ++ L+P G ++ V E R + P+EF P+RFL
Sbjct: 378 RKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGG 437
Query: 161 -------KFKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
+PF G R C G +AM+ + +A +++ +
Sbjct: 438 DGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREF 483
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 52.7 bits (126), Expect = 3e-08
Identities = 35/163 (21%), Positives = 76/163 (46%), Gaps = 13/163 (7%)
Query: 47 DTTAGVASWTLYALGHHPEIQEKIVQEAESVGFYDGPVTIQTLASMDYLERCIKESMRLY 106
D + W + + + PEI K ++E + V + V + ++Y++ I+E+ RL+
Sbjct: 341 DNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLH 400
Query: 107 P----PVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEK- 161
P +P +A + +P G + ++ + R P+ + +PL F P+R L +
Sbjct: 401 PVAAFNLPHVA---LSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNEC 457
Query: 162 -----FKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
++ ++ FSTG R C + +++A++L+ +
Sbjct: 458 SEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGF 500
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 50.2 bits (120), Expect = 2e-07
Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 44 TGHDTTAGVASWTLYALGHHPEIQEKIVQEAESV---GFYDGPVTIQTLASMDYLERCIK 100
+G++T + + + L HP+ +++ +E ++ + P+ SM + I
Sbjct: 275 SGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIF 334
Query: 101 ESMRLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLE 160
E+ RL V + R+ ++ ++P G I++ E + P +P+P+ FNP R+L+
Sbjct: 335 ETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLD 394
Query: 161 KF--KHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
K H Y ++ F G R C G+++ ++ + + RY
Sbjct: 395 KSLESHNYFFL-FGGGTRLCPGKELGIVEISTFLHYFVTRY 434
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 43.0 bits (101), Expect = 5e-05
Identities = 33/161 (20%), Positives = 72/161 (44%), Gaps = 6/161 (3%)
Query: 45 GHDTTAGVASWTLYALGHHPEIQEKIVQEAESV-GFYDGPVTIQ--TLASMDYLERCIKE 101
G++TT+ + + + L P ++ +E E + +++ SM + + + E
Sbjct: 279 GYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNE 338
Query: 102 SMRLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPLEFNPDRFLEK 161
++R+ + I R+ ++ +P G +F + H EYF + FNP R+
Sbjct: 339 TLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSN 398
Query: 162 FKHP---YAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
+ PF GPR C G ++A ++ + + +++ R+
Sbjct: 399 SGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRF 439
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 43.0 bits (102), Expect = 6e-05
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 53/170 (31%)
Query: 64 PEIQEKIVQEAES-VGFYDGPVTIQTLASMDYLERCIKESMRLYPPVPVI---ARQLYAP 119
E+Q ++ +E S V G VT L M ++ + E++R+ PPVP AR+
Sbjct: 304 EELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRARE---- 359
Query: 120 LKTPNMLVPAGCSIFINVFEQH--------------------RIPEYFPNPLEFNPDRFL 159
+ ++ E H R P+ F P EF PDRF+
Sbjct: 360 ----DFVI-----------ESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFM 404
Query: 160 -EKFKHPYAYVPFSTGP---------RNCIGQKVAMMSQKILIAKILKRY 199
E+ + YV +S G + C G+ ++ ++ +A++ RY
Sbjct: 405 GEEGEKLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRY 454
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 39.0 bits (91), Expect = 0.001
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 87 QTLASMDYL-----ERCIKESMRLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQH 141
+ L DY+ + I E++R+ + + R+ ++ L+P G + H
Sbjct: 304 EPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVH 363
Query: 142 RIPEYFPNPLEFNPDRFLEKFKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRY 199
E + NP +FNP R+ EK + ++ PF G R C G +A + I + ++ R+
Sbjct: 364 LDEENYDNPYQFNPWRWQEKDMNNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRF 421
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 36.4 bits (84), Expect = 0.009
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 92 MDYLERCIKESMRLYPPVPVIARQLYAPLKTPNMLVPAGCSIFINVFEQHRIPEYFPNPL 151
M++ + I E++RL V + R+ ++ +P+G + + H + P
Sbjct: 343 MEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQ 402
Query: 152 EFNPDRFLE----------KFKHPYAYVPFSTGPRNCIGQKVAMMSQKILI 192
FNP R+ + ++PF GPR C G ++A + + I
Sbjct: 403 LFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFI 453
>gnl|CDD|233435 TIGR01488, HAD-SF-IB, Haloacid Dehalogenase superfamily, subfamily
IB, phosphoserine phosphatase-like. This model
represents a subfamily of the Haloacid Dehalogenase
superfamily of aspartate-nucleophile hydrolases.
Subfamily IA, B, C and D are distinguished from the rest
of the superfamily by the presence of a variable domain
between the first and second conserved catalytic motifs.
In subfamilies IA and IB, this domain consists of an
alpha-helical bundle. It was necessary to model these
two subfamilies separately, breaking them at a an
apparent phylogenetic bifurcation, so that the resulting
model(s) are not so broadly defined that members of
subfamily III (which lack the variable domain) are
included. Subfamily IA includes the enzyme phosphoserine
phosphatase (TIGR00338) as well as three hypothetical
equivalogs. Many members of these hypothetical
equivalogs have been annotated as PSPase-like or
PSPase-family proteins. In particular, the hypothetical
equivalog which appears to be most closely related to
PSPase contains only Archaea (while TIGR00338 contains
only eukaryotes and bacteria) of which some are
annotated as PSPases. Although this is a reasonable
conjecture, none of these sequences has sufficient
evidence for this assignment. If such should be found,
this model should be retired while the PSPase model
should be broadened to include these sequences [Unknown
function, Enzymes of unknown specificity].
Length = 177
Score = 29.3 bits (66), Expect = 1.1
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 89 LASMDYLERCIKESMRLYPPVPVIARQLYAPLKTPN---MLVPAGCSIFIN-VFEQHRIP 144
L E KE + + AR+L + LK ++V G F+ V E+ I
Sbjct: 54 LLHRSRSEEVAKEFLARQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113
Query: 145 EYFPNPLEFNPD 156
+ F N LEF+ +
Sbjct: 114 DVFANRLEFDDN 125
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 28.6 bits (64), Expect = 3.0
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 31 EQFSAIP------VWSKDATGHDTTAGVASWTLYALGH-HPEIQEKIVQEAESV------ 77
EQ IP VW +D G V+SW + GH +P I ++I + + +
Sbjct: 26 EQLPLIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILA 85
Query: 78 GFYDGPV 84
GF PV
Sbjct: 86 GFSHEPV 92
>gnl|CDD|201127 pfam00273, Serum_albumin, Serum albumin family.
Length = 178
Score = 27.7 bits (62), Expect = 3.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 12/40 (30%)
Query: 144 PEYFPNPLEF------NPDRFLEKF------KHPYAYVPF 171
FP P E +PD+FL +F +HP YVP
Sbjct: 114 KTDFPEPEEVCQAYKEDPDKFLGRFLYEYSRRHPDLYVPE 153
>gnl|CDD|225009 COG2098, COG2098, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 116
Score = 27.0 bits (60), Expect = 3.9
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 88 TLASMDYLERCIKESMRLYPPV 109
+ + + LE+ I+ES+++ P V
Sbjct: 35 SPGTAESLEKAIEESIKVQPFV 56
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 27.7 bits (62), Expect = 4.7
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 146 YFPNPLEFNPDRF-------LEKFKHPYAYVPFSTGPRN 177
Y P + + L FK P ++P PRN
Sbjct: 393 YVPKDPSISLEELKTAIKDQLSPFKQPKHWIPVPQLPRN 431
>gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase
(RO) family, Vanillate-O-demethylase oxygenase (VanA)
and dicamba O-demethylase oxygenase (DdmC) subfamily,
N-terminal Rieske domain of the oxygenase alpha subunit;
ROs comprise a large class of aromatic
ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis. Vanillate-O-demethylase is a heterodimeric
enzyme consisting of a terminal oxygenase (VanA) and
reductase (VanB) components. This enzyme reductively
catalyzes the conversion of vanillate into
protocatechuate and formaldehyde. Protocatechuate and
vanillate are important intermediate metabolites in the
degradation pathway of lignin-derived compounds such as
ferulic acid and vanillin by soil microbes. DDmC is the
oxygenase component of a three-component dicamba
O-demethylase found in Pseudomonas maltophila, that
catalyzes the conversion of a widely used herbicide
called herbicide dicamba (2-methoxy-3,6-dichlorobenzoic
acid) to DCSA (3,6-dichlorosalicylic acid).
Length = 116
Score = 26.6 bits (59), Expect = 4.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 16 RRCKSKAGLQSHPAEEQFSAIPVWSKDATGHD 47
R +KA ++S+P E+ + I +W DA D
Sbjct: 85 ERVPAKACVRSYPVVERDALIWIWMGDAALAD 116
>gnl|CDD|240108 cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain
associated with serine threonine kinases. Some members
of this subgroup lack the zinc binding site and the
active site residues, and therefore are most likely
inactive. The function of this domain is unknown.
Length = 321
Score = 27.7 bits (62), Expect = 5.0
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 46 HDTTAGVASWTLYALGHHPE 65
+D AG+A W L LGH
Sbjct: 43 YDGRAGIA-WVLIELGHPAR 61
>gnl|CDD|173971 cd08206, RuBisCO_large_I_II_III, Ribulose bisphosphate carboxylase
large chain, Form I,II,III. Ribulose bisphosphate
carboxylase (Rubisco) plays an important role in the
Calvin reductive pentose phosphate pathway. It catalyzes
the primary CO2 fixation step. Rubisco is activated by
carbamylation of an active site lysine, stabilized by a
divalent cation, which then catalyzes the proton
abstraction from the substrate ribulose 1,5 bisphosphate
(RuBP) and leads to the formation of two molecules of
3-phosphoglycerate. Members of the Rubisco family can be
divided into 4 subgroups, Form I-IV, which differ in
their taxonomic distribution and subunit composition.
Form I-III have Rubisco activity, while Form IV, also
called Rubico-like proteins (RLP), are missing critical
active site residues.
Length = 414
Score = 27.2 bits (61), Expect = 7.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 159 LEKFKHPYAYVPFSTGPRNCIGQKVAMMSQKILIAKILKRYVVGSTVKPK 208
LE F+ P AY+ GP I ++IL R ++G+ VKPK
Sbjct: 100 LEDFRFPPAYLKTFDGPSFGI-----QGEREIL--GKYGRPLLGTIVKPK 142
>gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.
Length = 326
Score = 27.2 bits (61), Expect = 8.0
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 22/76 (28%)
Query: 15 DRRCKSKAGLQSHPAEEQFSAIPVWSKDATGHDTTAGVASWTLYALGHHPEIQEKIVQEA 74
D R KS LQ E++FS IP W + +++ + + A
Sbjct: 106 DGRLKSTKLLQKLAEEKEFSLIPPWDTE----------------------GLKQLVERTA 143
Query: 75 ESVGFYDGPVTIQTLA 90
+ +G P + LA
Sbjct: 144 QELGVKLTPEAAELLA 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,069,643
Number of extensions: 1023329
Number of successful extensions: 913
Number of sequences better than 10.0: 1
Number of HSP's gapped: 858
Number of HSP's successfully gapped: 45
Length of query: 215
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 122
Effective length of database: 6,812,680
Effective search space: 831146960
Effective search space used: 831146960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)