BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2561
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 145 bits (365), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 2 SQGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
++GH +D+ AR LW GLDYLHGTGHG+GS+LNVHEGP +SY +D + A M ++
Sbjct: 463 TKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISY-KTFSDEPLEAGMIVT 521
Query: 62 DEPGYYEDGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLVPIQTSLLCCNMLTADE 121
DEPGYYEDG FGIRIEN+V V+P +TKY+ N+ LT + +TLVPIQT ++ + LT E
Sbjct: 522 DEPGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDSLTDKE 581
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 7 IDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEP 64
+DA AR L GL ++H TGHGIG L VHE P Y+ + ++A M S EP
Sbjct: 287 VDAAARDVLADAGLAEYFVHRTGHGIG--LCVHEEP----YIVAGNELPLVAGMAFSIEP 340
Query: 65 GYYEDGKFGIRIENIVQV 82
G Y G++G RIE+IV V
Sbjct: 341 GIYFPGRWGARIEDIVVV 358
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 4 GHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
G +D++AR + G + H GHGIG L VHEGP ++S+ DS + ++ +
Sbjct: 267 GKLLDSVAREFIREKGYGEFFGHSLGHGIG--LEVHEGP-AISF---RNDSPLPENVVFT 320
Query: 62 DEPGYYEDGKFGIRIENIV 80
EPG Y +GKFGIRIE V
Sbjct: 321 VEPGIYLEGKFGIRIEEDV 339
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 7 IDAIARH--NLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEP 64
+DA AR + + G ++H TGHG+G ++VHE P Y+ + M + EP
Sbjct: 288 VDATARGIISKYGYGEYFIHRTGHGLG--IDVHEEP----YISPGNKKILKDGMVFTIEP 341
Query: 65 GYYEDGKFGIRIENIVQVI 83
G Y GKFG+RIE+ V ++
Sbjct: 342 GIYLQGKFGVRIEDDVALV 360
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 4 GHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
G DA+ R + G + H TGHGIG L +HE P L +D+ + M ++
Sbjct: 264 GREADALTRDYITEKGYGEYFGHSTGHGIG--LEIHEAP----GLAFRSDTVLEPGMAVT 317
Query: 62 DEPGYYEDGKFGIRIEN 78
EPG Y G G+RIE+
Sbjct: 318 VEPGIYIPGIGGVRIED 334
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 7 IDAIARHNLWSVGL-DY-LHGTGHGIGSYLNVHEGPISVSYLPKATDSGILAD-MFISDE 63
+D+IAR + G DY +H GHG+G L +HE P Y D +L + M I+ E
Sbjct: 261 LDSIAREIIKEYGYGDYFIHSLGHGVG--LEIHEWPRISQY-----DETVLKEGMVITIE 313
Query: 64 PGYYEDGKFGIRIENIV 80
PG Y G+RIE+ V
Sbjct: 314 PGIYIPKLGGVRIEDTV 330
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 7 IDAIARHNL--WSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILAD-MFISDE 63
+D+IAR+ + + G + H GHG+G L VHE P Y D +L + M I+ E
Sbjct: 264 LDSIARNIIAEYGYGEYFNHSLGHGVG--LEVHEWPRVSQY-----DETVLREGMVITIE 316
Query: 64 PGYYEDGKFGIRIENIV 80
PG Y G+RIE+ +
Sbjct: 317 PGIYIPKIGGVRIEDTI 333
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 7 IDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEP 64
+D+ AR + G ++H TGHG+G L+VHE P Y+ + + M + EP
Sbjct: 267 VDSRAREVISKAGYGEYFIHRTGHGLG--LDVHEEP----YIGPDGEVILKNGMTFTIEP 320
Query: 65 GYYEDGKFGIRIENIVQVIPAETKYSRKNKT 95
G Y G G+RIE+ ++ E K R K
Sbjct: 321 GIYVPGLGGVRIED--DIVVDEGKGRRLTKA 349
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 56 ADMFISDEPGYYEDGKFGIRIENIVQVIPAETKY 89
AD+++ DEP Y D K + I++ + A TKY
Sbjct: 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKY 273
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 32 SYLNVHEGP-ISVSYLPK-ATDSGILADMFISDEPGYYEDGKFGIRIENIVQVIP 84
S++ + + P + V+Y + TD +LA M ++EPG DG + ++ Q IP
Sbjct: 152 SWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGTERDGDYFF---SMPQAIP 203
>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex
With Cortisol
Length = 371
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 9 AIARHNLWSVGLDYLHGTGHGIG--SYLNVHEGPISVSYLPKATDSGI------------ 54
A+A +L S L G + S +H+ ++YL K +D+G+
Sbjct: 43 ALAMVSLGSAQTQSLQSLGFNLTETSEAEIHQSFQYLNYLLKQSDTGLEMNMGNAMFLLQ 102
Query: 55 ---LADMFISDEPGYYEDGKFGIRIEN 78
L D F++D YYE I E+
Sbjct: 103 KLKLKDSFLADVKQYYESEALAIDFED 129
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 21 DYLHGTGHGIGSYLNVHEGPISVSY----LPKATDSGILADMFISDEPGY 66
D++ GT HG G N GP+ V LP T + + DM I++ P +
Sbjct: 122 DHVVGTEHGTGGIRNGLYGPVIVRRKGDVLPDRTHTIVFNDMTINNRPAH 171
>pdb|2BI4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BI4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BL4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BL4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
Length = 392
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 10 IARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLP 47
+A +VGL +HG H +G++ N G + LP
Sbjct: 258 VAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLP 295
>pdb|1RRM|A Chain A, Crystal Structure Of Lactaldehyde Reductase
pdb|1RRM|B Chain B, Crystal Structure Of Lactaldehyde Reductase
Length = 386
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 10 IARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLP 47
+A +VGL +HG H +G++ N G + LP
Sbjct: 249 VAGXGFSNVGLGLVHGXAHPLGAFYNTPHGVANAILLP 286
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 21 DYLHGTGHGIGSYLNVHEGPISVSY----LPKATDSGILADMFISDE 63
D++ GT HG G N GP+ V LP AT + + DM I++
Sbjct: 120 DHVVGTEHGTGGIRNGLYGPVIVRRKGDVLPDATHTIVFNDMTINNR 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,148,478
Number of Sequences: 62578
Number of extensions: 168473
Number of successful extensions: 317
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 21
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)