Query psy2561
Match_columns 134
No_of_seqs 161 out of 1316
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:22:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2413|consensus 100.0 4.4E-36 9.4E-41 257.0 9.4 128 2-131 451-578 (606)
2 COG0006 PepP Xaa-Pro aminopept 99.9 9.7E-26 2.1E-30 186.5 9.0 95 3-112 287-383 (384)
3 PRK09795 aminopeptidase; Provi 99.9 1.7E-25 3.6E-30 183.9 9.6 91 2-110 264-356 (361)
4 PRK15173 peptidase; Provisiona 99.9 7.7E-24 1.7E-28 172.6 9.8 94 2-111 226-321 (323)
5 PRK12897 methionine aminopepti 99.9 3.4E-23 7.3E-28 162.6 9.0 90 2-105 141-248 (248)
6 PRK05716 methionine aminopepti 99.9 5.6E-23 1.2E-27 160.5 9.6 93 2-108 142-252 (252)
7 PRK07281 methionine aminopepti 99.9 6.9E-23 1.5E-27 165.0 10.2 94 2-109 172-284 (286)
8 PRK14575 putative peptidase; P 99.9 6E-23 1.3E-27 171.7 9.7 93 2-110 309-403 (406)
9 cd01085 APP X-Prolyl Aminopept 99.9 7.8E-23 1.7E-27 159.2 9.2 81 3-86 137-218 (224)
10 TIGR02993 ectoine_eutD ectoine 99.9 1.9E-22 4.1E-27 167.8 9.1 93 2-112 294-390 (391)
11 PRK14576 putative endopeptidas 99.9 4.7E-22 1E-26 166.3 9.8 93 2-110 308-402 (405)
12 TIGR00500 met_pdase_I methioni 99.9 8.3E-22 1.8E-26 153.9 9.2 89 2-104 140-246 (247)
13 cd01090 Creatinase Creatine am 99.9 9.7E-22 2.1E-26 153.1 8.7 89 2-104 133-228 (228)
14 PRK12318 methionine aminopepti 99.9 1.4E-21 3E-26 157.6 9.8 91 2-107 182-291 (291)
15 cd01086 MetAP1 Methionine Amin 99.9 2.2E-21 4.8E-26 150.4 9.1 89 2-104 132-238 (238)
16 cd01087 Prolidase Prolidase. E 99.9 1.6E-21 3.5E-26 151.9 8.1 86 2-104 127-243 (243)
17 PLN03158 methionine aminopepti 99.8 3.6E-21 7.8E-26 161.1 9.8 96 3-112 275-389 (396)
18 PRK10879 proline aminopeptidas 99.8 7.3E-21 1.6E-25 160.7 9.4 95 2-114 306-430 (438)
19 PRK12896 methionine aminopepti 99.8 1.3E-20 2.8E-25 147.4 9.4 88 3-104 148-254 (255)
20 cd01091 CDC68-like Related to 99.8 1.4E-20 3.1E-25 148.3 8.1 86 2-104 143-243 (243)
21 PRK13607 proline dipeptidase; 99.8 7.1E-20 1.5E-24 155.1 8.0 89 2-104 292-438 (443)
22 cd01092 APP-like Similar to Pr 99.8 4.8E-19 1E-23 133.7 8.9 78 2-85 127-206 (208)
23 COG0024 Map Methionine aminope 99.7 7.3E-18 1.6E-22 134.0 8.9 90 3-106 145-253 (255)
24 PF00557 Peptidase_M24: Metall 99.7 2.7E-17 5.9E-22 124.5 6.9 78 2-84 126-207 (207)
25 cd01066 APP_MetAP A family inc 99.7 8.8E-17 1.9E-21 119.5 9.0 78 2-85 126-205 (207)
26 KOG2414|consensus 99.7 3.6E-17 7.8E-22 136.4 5.8 73 22-114 400-482 (488)
27 cd01089 PA2G4-like Related to 99.7 2.3E-16 5E-21 122.5 7.0 84 2-104 144-228 (228)
28 KOG2737|consensus 99.6 7.4E-16 1.6E-20 127.8 3.8 82 21-116 362-478 (492)
29 KOG2738|consensus 99.6 4.2E-15 9.1E-20 120.1 6.8 88 4-105 255-360 (369)
30 PRK08671 methionine aminopepti 99.4 9.3E-13 2E-17 106.1 9.4 70 2-75 125-196 (291)
31 TIGR00495 crvDNA_42K 42K curve 99.3 9E-12 2E-16 104.4 10.7 111 2-126 162-360 (389)
32 cd01088 MetAP2 Methionine Amin 99.3 5.1E-12 1.1E-16 101.8 8.7 71 2-76 124-196 (291)
33 PTZ00053 methionine aminopepti 99.3 1.9E-11 4E-16 104.6 9.0 67 2-72 287-364 (470)
34 TIGR00501 met_pdase_II methion 99.3 2.6E-11 5.7E-16 98.0 8.6 74 2-78 128-202 (295)
35 KOG1189|consensus 98.0 9.2E-06 2E-10 72.9 4.8 99 2-117 281-390 (960)
36 COG5406 Nucleosome binding fac 94.2 0.07 1.5E-06 48.1 4.5 79 2-85 322-410 (1001)
37 cd01086 MetAP1 Methionine Amin 90.2 1.8 4E-05 33.1 7.4 76 3-85 27-106 (238)
38 cd01088 MetAP2 Methionine Amin 88.2 2.6 5.5E-05 34.0 7.2 72 3-83 27-99 (291)
39 PLN03158 methionine aminopepti 87.8 2.2 4.7E-05 36.3 6.8 75 3-84 169-247 (396)
40 PRK05716 methionine aminopepti 85.0 5.3 0.00012 30.8 7.3 73 3-84 37-115 (252)
41 KOG2775|consensus 81.5 1.3 2.9E-05 36.8 2.7 61 5-67 217-287 (397)
42 COG0024 Map Methionine aminope 65.9 15 0.00033 29.5 5.0 76 3-84 37-116 (255)
43 PRK12896 methionine aminopepti 60.2 49 0.0011 25.4 6.9 72 4-84 43-120 (255)
44 PF07385 DUF1498: Protein of u 57.7 14 0.00029 29.3 3.4 37 49-85 153-192 (225)
45 PF03983 SHD1: SLA1 homology d 56.6 31 0.00068 22.4 4.4 53 65-129 13-65 (70)
46 COG3822 ABC-type sugar transpo 52.2 14 0.0003 28.9 2.6 37 49-85 152-191 (225)
47 TIGR00495 crvDNA_42K 42K curve 47.9 1.1E+02 0.0024 25.8 7.6 33 51-84 98-130 (389)
48 TIGR00501 met_pdase_II methion 43.6 1.4E+02 0.003 24.0 7.3 71 4-84 32-104 (295)
49 PF13510 Fer2_4: 2Fe-2S iron-s 42.2 14 0.00031 24.1 1.1 46 12-62 22-79 (82)
50 cd07356 HN_L-whirlin_R1_like F 35.2 27 0.00058 23.2 1.5 17 115-131 14-34 (78)
51 cd01066 APP_MetAP A family inc 33.3 1.8E+02 0.0039 20.7 6.2 72 4-84 28-99 (207)
52 KOG2738|consensus 32.0 1.3E+02 0.0028 25.3 5.3 78 3-85 148-227 (369)
53 cd01087 Prolidase Prolidase. E 31.8 2.3E+02 0.005 21.5 7.2 70 4-82 28-97 (243)
54 KOG3303|consensus 31.8 27 0.00059 26.9 1.3 16 117-132 109-124 (192)
55 TIGR00384 dhsB succinate dehyd 31.5 29 0.00062 26.7 1.4 42 19-66 41-86 (220)
56 COG3737 Uncharacterized conser 29.8 80 0.0017 22.8 3.3 30 56-85 3-42 (127)
57 PF14754 IFR3_antag: Papain-li 28.5 64 0.0014 24.6 2.8 47 55-110 128-174 (249)
58 TIGR00500 met_pdase_I methioni 27.5 2.8E+02 0.006 21.1 6.8 73 5-84 37-113 (247)
59 KOG2776|consensus 25.7 1.1E+02 0.0024 26.2 4.0 36 49-85 98-133 (398)
60 TIGR02669 SpoIID_LytB SpoIID/L 25.4 27 0.00058 28.0 0.3 13 23-37 228-240 (267)
61 PRK12897 methionine aminopepti 25.3 3.2E+02 0.0069 21.0 7.5 75 3-84 36-114 (248)
62 PF10230 DUF2305: Uncharacteri 25.0 22 0.00047 28.1 -0.2 15 23-37 86-100 (266)
63 PF14980 TIP39: TIP39 peptide 24.9 49 0.0011 20.0 1.3 16 116-131 29-45 (51)
64 PF00557 Peptidase_M24: Metall 24.5 2.8E+02 0.0062 20.2 7.0 72 3-83 26-99 (207)
65 PTZ00053 methionine aminopepti 24.5 4.9E+02 0.011 22.9 7.9 34 49-83 229-262 (470)
66 TIGR02480 fliN flagellar motor 24.1 95 0.0021 19.9 2.7 11 53-63 28-38 (77)
67 cd01092 APP-like Similar to Pr 23.5 2.9E+02 0.0064 20.0 7.2 73 4-85 28-101 (208)
68 PF08381 BRX: Transcription fa 23.0 88 0.0019 19.7 2.3 10 59-68 7-16 (59)
69 PRK08916 flagellar motor switc 22.3 97 0.0021 22.0 2.7 12 53-64 65-76 (116)
70 PF04297 UPF0122: Putative hel 21.0 72 0.0016 22.1 1.7 17 114-130 15-31 (101)
71 TIGR02870 spore_II_D stage II 20.1 39 0.00084 28.2 0.3 12 24-37 299-310 (338)
No 1
>KOG2413|consensus
Probab=100.00 E-value=4.4e-36 Score=256.99 Aligned_cols=128 Identities=50% Similarity=0.876 Sum_probs=121.1
Q ss_pred CchHHHHHHHHHHHHHcCCCCCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeEE
Q psy2561 2 SQGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIVQ 81 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v~ 81 (134)
|.|+.+|.+||..+|+.|++|.|+||||||||++|||+|..++.++-.+..+|++|||+++|||+|.+|.+|+|+||.++
T Consensus 451 t~g~~lD~laR~~LW~~gLDy~HgTGHGVG~fLnVhE~P~~is~r~~~~~~~l~ag~~~s~EPGYY~dg~fGIRienv~~ 530 (606)
T KOG2413|consen 451 TKGSVLDALARSALWKAGLDYGHGTGHGVGSFLNVHEGPIGIGYRPYSSNFPLQAGMVFSIEPGYYKDGEFGIRIENVVE 530 (606)
T ss_pred CCcchhHHHHHHHHHhhccccCCCCCcccccceEeccCCceeeeeecCCCchhcCceEeccCCcccccCcceEEEeeEEE
Confidence 57899999999999999999999999999999999999988877654677889999999999999999999999999999
Q ss_pred EecCCccccCCCceeeeeeeccCCCccchhhhhccCCHHHHHHHHhhhhh
Q psy2561 82 VIPAETKYSRKNKTFLTFKTITLVPIQTSLLCCNMLTADEVSRIEYTLFI 131 (134)
Q Consensus 82 Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~~i~~~ll~~~e~~wln~y~~~ 131 (134)
|.+.+++++| +.||+||.||.+|+|.++||++||+++|+.|||.||+.
T Consensus 531 vvd~~~~~~~--~~~L~fe~lT~vP~q~klid~~LLs~eE~~~LN~Yh~~ 578 (606)
T KOG2413|consen 531 VVDAGTKHNF--RGFLTFEPLTLVPYQTKLIDKSLLSEEEINWLNEYHAK 578 (606)
T ss_pred EEeccccccc--cceeeeccceecceecccCChhhCCHHHHHHHHHHHHH
Confidence 9999888888 89999999999999999999999999999999999985
No 2
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.93 E-value=9.7e-26 Score=186.48 Aligned_cols=95 Identities=41% Similarity=0.627 Sum_probs=86.2
Q ss_pred chHHHHHHHHHHHHHcCC--CCCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeE
Q psy2561 3 QGHAIDAIARHNLWSVGL--DYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIV 80 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~--~~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v 80 (134)
++++||+++|+++++.|+ ++.|++|||||+++++||.|..+.. ++..+|+||||||+|||+|.++.+||||||+|
T Consensus 287 ~~~~vd~~ar~~i~~~g~~~~~~h~~GHgvG~~l~vhE~p~~~~~---~~~~~L~~GMv~t~Epg~y~~g~~GirIEd~v 363 (384)
T COG0006 287 TGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYLSP---GSDTTLEPGMVFSIEPGIYIPGGGGVRIEDTV 363 (384)
T ss_pred cHHHHHHHHHHHHHhcCCcccccCCccccCCCCcccCcCccccCC---CCCccccCCcEEEeccccccCCCceEEEEEEE
Confidence 789999999999999777 5999999999999999999952343 57899999999999999999999999999999
Q ss_pred EEecCCccccCCCceeeeeeeccCCCccchhh
Q psy2561 81 QVIPAETKYSRKNKTFLTFKTITLVPIQTSLL 112 (134)
Q Consensus 81 ~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~~i 112 (134)
+||++ |+|+||..|.++.++
T Consensus 364 lVte~------------G~e~LT~~~~~~~~~ 383 (384)
T COG0006 364 LVTED------------GFEVLTRVPKELLVI 383 (384)
T ss_pred EEcCC------------CceecccCCcceeec
Confidence 99999 999999888876644
No 3
>PRK09795 aminopeptidase; Provisional
Probab=99.92 E-value=1.7e-25 Score=183.90 Aligned_cols=91 Identities=32% Similarity=0.531 Sum_probs=84.3
Q ss_pred CchHHHHHHHHHHHHHcCCC--CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeee
Q psy2561 2 SQGHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENI 79 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~--~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~ 79 (134)
.++++||++++++++++||. +.|++||||| +++||.|.+ .+ +++.+|++||||||||++|.++.+|+|+||+
T Consensus 264 ~~~~~v~~~~~~~~~~~g~~~~~~h~~GHgiG--l~~he~p~i-~~---~~~~~l~~gmv~~iEpgiy~~~~~gvriEd~ 337 (361)
T PRK09795 264 VRCQQVDDAARRVITEAGYGDYFGHNTGHAIG--IEVHEDPRF-SP---RDTTTLQPGMLLTVEPGIYLPGQGGVRIEDV 337 (361)
T ss_pred CcHHHHHHHHHHHHHHcCCCccCCCCCCccCC--ccccCCCCc-CC---CCCCCcCCCCEEEECCEEEeCCCCEEEEeeE
Confidence 46899999999999999993 7899999999 999999984 44 5789999999999999999999999999999
Q ss_pred EEEecCCccccCCCceeeeeeeccCCCccch
Q psy2561 80 VQVIPAETKYSRKNKTFLTFKTITLVPIQTS 110 (134)
Q Consensus 80 v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~ 110 (134)
|+||++ |+|+||..|+++.
T Consensus 338 v~vt~~------------G~e~Lt~~~~~l~ 356 (361)
T PRK09795 338 VLVTPQ------------GAEVLYAMPKTVL 356 (361)
T ss_pred EEECCC------------CcEeCcCCCceEE
Confidence 999999 9999999999874
No 4
>PRK15173 peptidase; Provisional
Probab=99.90 E-value=7.7e-24 Score=172.58 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=84.5
Q ss_pred CchHHHHHHHHHHHHHcCCC--CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeee
Q psy2561 2 SQGHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENI 79 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~--~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~ 79 (134)
.++++|++++++++++.|+. +.|++|||||.++.+||.|.+. . +++.+|++||||||||++|.++.+|+|+||+
T Consensus 226 ~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~E~P~i~-~---~~~~~Le~GMV~tiEPgiy~~g~ggvriEDt 301 (323)
T PRK15173 226 VKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVS-T---HATESFTSGMVLSLETPYYGYNLGSIMIEDM 301 (323)
T ss_pred CcHHHHHHHHHHHHHHcCCccccCCCCCCcCCCCCCcCCCCCCC-C---CCCCccCCCCEEEECCEEEcCCCcEEEEeeE
Confidence 36789999999999999993 6789999999777999999854 3 4678999999999999999999999999999
Q ss_pred EEEecCCccccCCCceeeeeeeccCCCccchh
Q psy2561 80 VQVIPAETKYSRKNKTFLTFKTITLVPIQTSL 111 (134)
Q Consensus 80 v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~~ 111 (134)
|+||++ |+|+||..|+++..
T Consensus 302 vlVTe~------------G~e~LT~~p~~l~~ 321 (323)
T PRK15173 302 ILINKE------------GIEFLSKLPRDLVS 321 (323)
T ss_pred EEEcCC------------cceeCCCCCcccee
Confidence 999999 99999999988753
No 5
>PRK12897 methionine aminopeptidase; Reviewed
Probab=99.89 E-value=3.4e-23 Score=162.58 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=79.0
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCcee-------------
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYY------------- 67 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy------------- 67 (134)
.++++++.++++++++.||. +.|++||||| +++||.|.+.++.+.+++.+|++|||||+||++|
T Consensus 141 ~~~~dv~~a~~~~~~~~g~~~~~~~~GHgiG--l~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~~~~~~~~~~~~~~ 218 (248)
T PRK12897 141 NRVGDIGYAIESYVANEGFSVARDFTGHGIG--KEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVGMRYSKVDLNGW 218 (248)
T ss_pred CccchHHHHHHHHHHHcCCccCCCeEECccC--CcccCCCccCCCCCCCCCCCcCCCCEEEECCeEecCCCceEECCCCc
Confidence 35789999999999999995 7899999999 9999999875443335678999999999999999
Q ss_pred ----ecCcceEEEeeeEEEecCCccccCCCceeeeeeeccCC
Q psy2561 68 ----EDGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLV 105 (134)
Q Consensus 68 ----~~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~~ 105 (134)
.+|.+|+|+||||+||++ |+|+||.+
T Consensus 219 ~~~~~~g~~g~r~edtv~Vt~~------------G~e~lt~~ 248 (248)
T PRK12897 219 TARTMDGKLSAQYEHTIAITKD------------GPIILTKL 248 (248)
T ss_pred EEEcCCCCeEeecceEEEEeCC------------ccEEeecC
Confidence 367789999999999999 99999963
No 6
>PRK05716 methionine aminopeptidase; Validated
Probab=99.89 E-value=5.6e-23 Score=160.53 Aligned_cols=93 Identities=24% Similarity=0.276 Sum_probs=82.1
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceee------------
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYE------------ 68 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~------------ 68 (134)
.++++|++++++.++++|+. ..+++||||| +.+||.|.+.++..++++.+|+|||||++||++|.
T Consensus 142 ~~~~dv~~~~~~~~~~~g~~~~~~~~GHgiG--~~~~e~p~~~~~~~~~~~~~le~Gmv~~vEp~i~~~~~~~~~~~~~~ 219 (252)
T PRK05716 142 ARLGDIGHAIQKYAEAEGFSVVREYCGHGIG--RKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMINAGKREVKTLKDGW 219 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCeeecCccccccC--CccCCCCccCcCCCCCCCCEecCCCEEEEccEEEcCCCceEEcCCCC
Confidence 36889999999999999995 6789999999 99999998655433367889999999999999997
Q ss_pred -----cCcceEEEeeeEEEecCCccccCCCceeeeeeeccCCCcc
Q psy2561 69 -----DGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLVPIQ 108 (134)
Q Consensus 69 -----~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~ 108 (134)
++.+|+|+||+|+||++ |+|+||..|.+
T Consensus 220 ~~~~~~g~~g~~~ed~v~Vt~~------------G~e~Lt~~~~~ 252 (252)
T PRK05716 220 TVVTKDGSLSAQYEHTVAVTED------------GPEILTLRPEE 252 (252)
T ss_pred EEEccCCCcEEeeeeEEEEcCC------------ccEEeeCCCCC
Confidence 56789999999999999 99999998864
No 7
>PRK07281 methionine aminopeptidase; Reviewed
Probab=99.89 E-value=6.9e-23 Score=165.04 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=81.1
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceee------------
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYE------------ 68 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~------------ 68 (134)
.++++|+++++++++++||. +.|++||||| +++||.|.+.+...++++.+|+|||||||||++|.
T Consensus 172 ~~~~di~~a~~~~~~~~G~~~~~~~~GHGIG--l~~hE~P~i~~~~~~~~~~~Le~GMV~tiEPgiy~~~~~~~~~~~~g 249 (286)
T PRK07281 172 NRIGDIGAAIQEYAESRGYGVVRDLVGHGVG--PTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTWEIDTDMKTG 249 (286)
T ss_pred CcHHHHHHHHHHHHHHcCCccCCCeeeeeCC--CccCCCCcCCCcccCCCCCEECCCCEEEECCeeEcCCcceecccCCC
Confidence 36789999999999999995 7899999999 99999998644322356789999999999999986
Q ss_pred ------cCcceEEEeeeEEEecCCccccCCCceeeeeeeccCCCccc
Q psy2561 69 ------DGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLVPIQT 109 (134)
Q Consensus 69 ------~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~ 109 (134)
+|.+|+|+||+|+||++ |+|+||..+.+.
T Consensus 250 w~~~~~~g~~gvr~EdtvlVT~~------------G~e~LT~~~~~~ 284 (286)
T PRK07281 250 WAHKTLDGGLSCQYEHQFVITKD------------GPVILTSQGEER 284 (286)
T ss_pred ceEEecCCCcEEEeccEEEEeCC------------cceECCCCCccc
Confidence 45668999999999999 999999877653
No 8
>PRK14575 putative peptidase; Provisional
Probab=99.89 E-value=6e-23 Score=171.73 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=84.3
Q ss_pred CchHHHHHHHHHHHHHcCCC--CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeee
Q psy2561 2 SQGHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENI 79 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~--~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~ 79 (134)
.++++|++++++++++.||. +.|++|||||.++.+||.|.+. . +++.+|++||||++||++|.++.+|+|+||+
T Consensus 309 ~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~e~P~i~-~---~~~~~Le~GMv~tiEpgiy~~g~gGvriEDt 384 (406)
T PRK14575 309 VKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVS-T---HATESFTSGMVLSLETPYYGYNLGSIMIEDM 384 (406)
T ss_pred CcHHHHHHHHHHHHHHcCCccccCCCCCCcccCCCCCccCCCCC-C---CCCCCcCCCCEEEECCeeecCCCcEEEEEeE
Confidence 46899999999999999993 6799999999667999999853 3 4678999999999999999999999999999
Q ss_pred EEEecCCccccCCCceeeeeeeccCCCccch
Q psy2561 80 VQVIPAETKYSRKNKTFLTFKTITLVPIQTS 110 (134)
Q Consensus 80 v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~ 110 (134)
|+||++ |+|+||..|+++.
T Consensus 385 vlVT~~------------G~e~LT~~p~~l~ 403 (406)
T PRK14575 385 ILINKE------------GIEFLSKLPRDLV 403 (406)
T ss_pred EEEcCC------------CcccCCCCCcccc
Confidence 999999 9999999998875
No 9
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=99.88 E-value=7.8e-23 Score=159.18 Aligned_cols=81 Identities=58% Similarity=1.081 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcceeecCCCCcccCCCCcC-CCCCCCCCCcccCCceeeecCceeecCcceEEEeeeEE
Q psy2561 3 QGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISV-SYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIVQ 81 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~~~~~~GHGIG~~l~vhE~P~~~-~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v~ 81 (134)
++++|++++++++.+.|+.|.|++|||||.++++||.|.++ .. +++.+|++||||||||++|.++.+|+|+||+|+
T Consensus 137 ~~~~v~~~~~~~~~~~g~~~~h~~GHgIG~~l~~hE~P~i~~~~---~~~~~L~~GmvftiEP~iy~~g~~gvried~v~ 213 (224)
T cd01085 137 TGSQLDALARQPLWKAGLDYGHGTGHGVGSFLNVHEGPQSISPA---PNNVPLKAGMILSNEPGYYKEGKYGIRIENLVL 213 (224)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCCCCCCcCCcC---CCCCCcCCCCEEEECCEeEeCCCeEEEeeEEEE
Confidence 68899999999999999999999999999666889999865 32 567899999999999999999999999999999
Q ss_pred EecCC
Q psy2561 82 VIPAE 86 (134)
Q Consensus 82 Vt~~~ 86 (134)
||+++
T Consensus 214 Vt~~G 218 (224)
T cd01085 214 VVEAE 218 (224)
T ss_pred EeeCC
Confidence 99993
No 10
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=99.87 E-value=1.9e-22 Score=167.79 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=80.8
Q ss_pred CchHHHHHHHHHHHHHcCCCCCCcceeecCCCCcccCCC----CcCCCCCCCCCCcccCCceeeecCceeecCcceEEEe
Q psy2561 2 SQGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGP----ISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIE 77 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~~~~~~GHGIG~~l~vhE~P----~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvrie 77 (134)
.++++|+++++++++++|+...|++||||| +++|+.+ ..++. +++.+|++|||||+||++|.++ +|+|+|
T Consensus 294 ~~~~dv~~~~~~~~~~~G~~~~h~~GhgiG--l~~~~~~~e~~~~l~~---~~~~~L~~GMv~tvEpgiy~~~-~Gvrie 367 (391)
T TIGR02993 294 NTCEDIANAFFAVLKKYGIHKDSRTGYPIG--LSYPPDWGERTMSLRP---GDNTVLKPGMTFHFMTGLWMED-WGLEIT 367 (391)
T ss_pred CcHHHHHHHHHHHHHHcCCccCCCceeeec--cCcCCCCCCccccccC---CCCceecCCCEEEEcceeEeCC-CCeEEe
Confidence 468899999999999999987899999999 9987422 12333 5789999999999999999986 599999
Q ss_pred eeEEEecCCccccCCCceeeeeeeccCCCccchhh
Q psy2561 78 NIVQVIPAETKYSRKNKTFLTFKTITLVPIQTSLL 112 (134)
Q Consensus 78 d~v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~~i 112 (134)
|+|+||++ |+|+||..|+++.++
T Consensus 368 d~v~VT~~------------G~e~Lt~~p~~l~~~ 390 (391)
T TIGR02993 368 ESILITET------------GVECLSSVPRKLFVK 390 (391)
T ss_pred eEEEECCC------------cceecccCCcccEeC
Confidence 99999999 999999999988654
No 11
>PRK14576 putative endopeptidase; Provisional
Probab=99.87 E-value=4.7e-22 Score=166.30 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=84.3
Q ss_pred CchHHHHHHHHHHHHHcCCC--CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeee
Q psy2561 2 SQGHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENI 79 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~--~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~ 79 (134)
.++++|+.+++++++++|+. +.|++|||+|.++.+||.|. +.. +++.+|++||||++||++|.+|.+|+|+||+
T Consensus 308 ~~~~dv~~a~~~~~~~~G~~~~~~~~~GHgiG~~l~~~e~P~-i~~---~~~~~Le~GMv~~vEp~~y~~g~ggvriEDt 383 (405)
T PRK14576 308 VKLKAVFDSTMAVIKTSGLPHYNRGHLGHGDGVFLGLEEVPF-VST---QATETFCPGMVLSLETPYYGIGVGSIMLEDM 383 (405)
T ss_pred CcHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcCcCCC-cCC---CCCCccCCCCEEEECCceeecCCCEEEEeeE
Confidence 46899999999999999993 67899999997788999998 444 4678999999999999999999999999999
Q ss_pred EEEecCCccccCCCceeeeeeeccCCCccch
Q psy2561 80 VQVIPAETKYSRKNKTFLTFKTITLVPIQTS 110 (134)
Q Consensus 80 v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~ 110 (134)
|+||++ |+|+||..|+++.
T Consensus 384 vlVTe~------------G~e~LT~~p~~l~ 402 (405)
T PRK14576 384 ILITDS------------GFEFLSKLDRDLR 402 (405)
T ss_pred EEECCC------------ccccCCCCCcccc
Confidence 999999 9999999998764
No 12
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=99.86 E-value=8.3e-22 Score=153.86 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=77.4
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeec-----------
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYED----------- 69 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~----------- 69 (134)
.++++|+.++++++.+.|+. +.+++||||| +++||.|.+.++...+++.+|++||||+|||++|.+
T Consensus 140 ~~~~~v~~~~~~~~~~~g~~~~~~~~GHgiG--~~~~e~p~i~~~~~~~~~~~l~~gmv~~iEp~i~~~~~~~~~~~~~~ 217 (247)
T TIGR00500 140 NRIGEIGAAIQKYAEAKGFSVVREYCGHGIG--RKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGTEEITTAADGW 217 (247)
T ss_pred CCHHHHHHHHHHHHHHcCCEeccCccCCccC--cccCCCCccCCcCcCCCCCEecCCCEEEEeeEEEcCCCcEEECCCCC
Confidence 36789999999999999995 6789999999 999999975543323567899999999999999973
Q ss_pred ------CcceEEEeeeEEEecCCccccCCCceeeeeeeccC
Q psy2561 70 ------GKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITL 104 (134)
Q Consensus 70 ------g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~ 104 (134)
+.+|+|+||+|+||++ |+|+||.
T Consensus 218 ~~~~~~~~~g~ried~v~Vt~~------------G~e~Lt~ 246 (247)
T TIGR00500 218 TVKTKDGSLSAQFEHTIVITDN------------GPEILTE 246 (247)
T ss_pred EEEccCCCeEEEEeEEEEEcCC------------ccEEccC
Confidence 4679999999999999 9999985
No 13
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=99.86 E-value=9.7e-22 Score=153.09 Aligned_cols=89 Identities=22% Similarity=0.177 Sum_probs=75.6
Q ss_pred CchHHHHHHHHHHHHHcCCC--CCCcceeecCCCCcccCCCCcCCC-CCCCCCCcccCCceeeecCceeec----CcceE
Q psy2561 2 SQGHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSY-LPKATDSGILADMFISDEPGYYED----GKFGI 74 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~--~~~~~GHGIG~~l~vhE~P~~~~~-~~~~~~~~L~~GMV~tiEPgiy~~----g~~gv 74 (134)
.++++|+++++++++++|+. +.|++||||| +.+||.|..... ...+++.+|+|||||||||++|.+ |.+|+
T Consensus 133 ~~~~~v~~a~~~~~~~~G~~~~~~~~~GHgiG--l~~he~~~~~g~~~~~~~~~~Le~GMV~~iEP~i~~~~~~~g~gG~ 210 (228)
T cd01090 133 ARCKDIAAELNEMYREHDLLRYRTFGYGHSFG--VLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGQPGAGGY 210 (228)
T ss_pred CcHHHHHHHHHHHHHHcCCCcccccccCcccc--cccccCCCccccccCCCCCCccCCCCEEEECCEEeecccCCCCcEE
Confidence 46899999999999999993 6899999999 999998742111 011567899999999999999984 78899
Q ss_pred EEeeeEEEecCCccccCCCceeeeeeeccC
Q psy2561 75 RIENIVQVIPAETKYSRKNKTFLTFKTITL 104 (134)
Q Consensus 75 ried~v~Vt~~~~~~~~~~~~~~G~e~LT~ 104 (134)
|+||+|+||++ |+|+||.
T Consensus 211 ried~v~Vt~~------------G~e~Lt~ 228 (228)
T cd01090 211 REHDILVINEN------------GAENITG 228 (228)
T ss_pred EeeeEEEECCC------------ccccCcC
Confidence 99999999999 9999983
No 14
>PRK12318 methionine aminopeptidase; Provisional
Probab=99.86 E-value=1.4e-21 Score=157.59 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=77.4
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecC---------c
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDG---------K 71 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g---------~ 71 (134)
.+.++|+.++++++++.|+. +.|++||||| +++||.|.+.+.. .+++.+|++||||+|||++|.++ .
T Consensus 182 ~~~~dv~~a~~~~~~~~G~~~~~~~~GHgIG--l~~hE~P~i~~~~-~~~~~~L~~GMV~~iEP~i~~~~~~g~~~~~~~ 258 (291)
T PRK12318 182 IPLYEIGEVIENCADKYGFSVVDQFVGHGVG--IKFHENPYVPHHR-NSSKIPLAPGMIFTIEPMINVGKKEGVIDPINH 258 (291)
T ss_pred CCHHHHHHHHHHHHHHcCCccCCCcccCCcC--ccccCCCcccCcC-CCCCCEeCCCCEEEECCEEEcCCCceEEecCCC
Confidence 36789999999999999996 6789999999 9999999865532 24568899999999999999863 3
Q ss_pred ceEE---------EeeeEEEecCCccccCCCceeeeeeeccCCCc
Q psy2561 72 FGIR---------IENIVQVIPAETKYSRKNKTFLTFKTITLVPI 107 (134)
Q Consensus 72 ~gvr---------ied~v~Vt~~~~~~~~~~~~~~G~e~LT~~P~ 107 (134)
|++| +||||+||++ |+|+||..|+
T Consensus 259 ~~~~~~~g~~~~~~edtv~VTe~------------G~e~LT~~~~ 291 (291)
T PRK12318 259 WEARTCDNQPSAQWEHTILITET------------GYEILTLLDK 291 (291)
T ss_pred cEEEecCCCeeeeeeeEEEEcCC------------cceeCCCCCC
Confidence 3334 7999999999 9999999884
No 15
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.85 E-value=2.2e-21 Score=150.36 Aligned_cols=89 Identities=24% Similarity=0.255 Sum_probs=78.2
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceee------------
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYE------------ 68 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~------------ 68 (134)
.++++|++++++++++.|+. +.+++||||| +.+||.|.+..+..++++.+|++||||++||++|.
T Consensus 132 ~~~~~v~~~~~~~~~~~G~~~~~~~~GHgiG--~~~~e~p~~~~~~~~~~~~~le~Gmv~~iep~i~~~~~~~~~~~~~~ 209 (238)
T cd01086 132 NRIGDIGHAIEKYAEKNGYSVVREFGGHGIG--RKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINLGTYEVVTLPDGW 209 (238)
T ss_pred CCHHHHHHHHHHHHHHcCcceecCccccCCC--CccccCCCcCCccCCCCCCEecCCCEEEEeeEEECCCCceEECCCCC
Confidence 36789999999999999995 6889999999 99999998653332367899999999999999996
Q ss_pred -----cCcceEEEeeeEEEecCCccccCCCceeeeeeeccC
Q psy2561 69 -----DGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITL 104 (134)
Q Consensus 69 -----~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~ 104 (134)
+|.+|+|+||+|+||++ |+|+||.
T Consensus 210 ~~~~~~g~~g~~~edtv~Vte~------------G~e~Lt~ 238 (238)
T cd01086 210 TVVTKDGSLSAQFEHTVLITED------------GPEILTL 238 (238)
T ss_pred EEEcCCCCEEEeeeeEEEEcCC------------cceeCCC
Confidence 56789999999999999 9999984
No 16
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=99.85 E-value=1.6e-21 Score=151.85 Aligned_cols=86 Identities=29% Similarity=0.257 Sum_probs=74.5
Q ss_pred CchHHHHHHHHHHHHHcCC--------------------CCCCcceeecCCCCcccCCCCcC-CCCCCCCCCcccCCcee
Q psy2561 2 SQGHAIDAIARHNLWSVGL--------------------DYLHGTGHGIGSYLNVHEGPISV-SYLPKATDSGILADMFI 60 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~--------------------~~~~~~GHGIG~~l~vhE~P~~~-~~~~~~~~~~L~~GMV~ 60 (134)
.++++|++++++++++.|+ .+.|++||||| +++||.|.+. .. +++.+|++||||
T Consensus 127 ~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiG--l~~~e~p~~~~~~---~~~~~l~~GMv~ 201 (243)
T cd01087 127 VSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLG--LDVHDVGGYLRYL---RRARPLEPGMVI 201 (243)
T ss_pred CcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccC--cccccCccccccC---CCCCCCCCCCEE
Confidence 3688999999999987532 36899999999 9999999742 22 567899999999
Q ss_pred eecCceeecC----------cceEEEeeeEEEecCCccccCCCceeeeeeeccC
Q psy2561 61 SDEPGYYEDG----------KFGIRIENIVQVIPAETKYSRKNKTFLTFKTITL 104 (134)
Q Consensus 61 tiEPgiy~~g----------~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~ 104 (134)
++||++|.++ .+|+|+||+|+||++ |+|+||.
T Consensus 202 ~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~~------------G~e~Lt~ 243 (243)
T cd01087 202 TIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTED------------GPENLTR 243 (243)
T ss_pred EECCEEEeCCcccccccccceeEEEeeeEEEEcCC------------cceeCcC
Confidence 9999999987 689999999999999 9999984
No 17
>PLN03158 methionine aminopeptidase; Provisional
Probab=99.85 E-value=3.6e-21 Score=161.13 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceee-------------
Q psy2561 3 QGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYE------------- 68 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~------------- 68 (134)
+.++|+.++++++.++||. +.+++||||| +.+||.|.+.++.......+|+||||||||||+|.
T Consensus 275 ~~~dI~~~i~~~~~~~G~~~v~~~~GHGIG--~~~He~P~i~~~~~~~~~~~l~~GMVfTIEP~i~~g~~~~~~~~d~wt 352 (396)
T PLN03158 275 RYREVGEVINRHATMSGLSVVKSYCGHGIG--ELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMINAGVWRDRMWPDGWT 352 (396)
T ss_pred CHHHHHHHHHHHHHHcCCCccCCccCCccc--cccCCCCCCCcccCCCCCCEecCCcEEEECCeeccCcccceecCCCce
Confidence 5789999999999999996 7899999999 99999998765432123478999999999999985
Q ss_pred ----cCcceEEEeeeEEEecCCccccCCCceeeeeeeccC-CCccchhh
Q psy2561 69 ----DGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITL-VPIQTSLL 112 (134)
Q Consensus 69 ----~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~-~P~~~~~i 112 (134)
+|..++|+||||+||++ |+|+||. .|....++
T Consensus 353 ~~t~dG~~~aq~E~tvlVTe~------------G~EiLT~~~~~~~~~~ 389 (396)
T PLN03158 353 AVTADGKRSAQFEHTLLVTET------------GVEVLTARLPSSPDVF 389 (396)
T ss_pred EEecCCceeeEeeeEEEEeCC------------cceECCCCCCCCcccc
Confidence 34457899999999999 9999997 66665543
No 18
>PRK10879 proline aminopeptidase P II; Provisional
Probab=99.84 E-value=7.3e-21 Score=160.74 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=79.0
Q ss_pred CchHHHHHHHHHHHH------------------HcCC--CCCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceee
Q psy2561 2 SQGHAIDAIARHNLW------------------SVGL--DYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61 (134)
Q Consensus 2 ~~~~~id~~~r~~l~------------------~~G~--~~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~t 61 (134)
.++++|+.++++++. +.|+ .+.|++||||| +++||.|.. .. +++.+|+||||||
T Consensus 306 ~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iG--ldvHd~~~~-~~---~~~~~L~~GmV~t 379 (438)
T PRK10879 306 TSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLG--LDVHDVGVY-GQ---DRSRILEPGMVLT 379 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccC--cCcCcCCCc-CC---CCCCcCCCCCEEE
Confidence 357788888876543 3455 47999999999 999998863 32 4678999999999
Q ss_pred ecCceeecC---------cceEEEeeeEEEecCCccccCCCceeeeeeeccC-CCccchhhhh
Q psy2561 62 DEPGYYEDG---------KFGIRIENIVQVIPAETKYSRKNKTFLTFKTITL-VPIQTSLLCC 114 (134)
Q Consensus 62 iEPgiy~~g---------~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~-~P~~~~~i~~ 114 (134)
||||+|.+. .+|+|+||+|+||++ |+|+||. +|++...|+.
T Consensus 380 vEPgiY~~~~~~~~~~~~~~GiRiED~VlVT~~------------G~e~LT~~~pk~~~~iE~ 430 (438)
T PRK10879 380 VEPGLYIAPDADVPEQYRGIGIRIEDDIVITET------------GNENLTASVVKKPDEIEA 430 (438)
T ss_pred ECCEEEECCCcCcccccCccEEEeccEEEECCC------------cCeEcCccCCCCHHHHHH
Confidence 999999863 259999999999999 9999995 9999998876
No 19
>PRK12896 methionine aminopeptidase; Reviewed
Probab=99.84 E-value=1.3e-20 Score=147.42 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCC-CCCCCCcccCCceeeecCcee-------------
Q psy2561 3 QGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYL-PKATDSGILADMFISDEPGYY------------- 67 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~-~~~~~~~L~~GMV~tiEPgiy------------- 67 (134)
++++|++++++++++.|+. +.|++||||| +.+||.|.++... .++++.+|++||||+|||++|
T Consensus 148 ~~~~v~~~~~~~~~~~G~~~~~~~~GHgiG--~~~he~p~~~~~~~~~~~~~~le~GmV~~iEp~i~~g~~~~~~~~~~~ 225 (255)
T PRK12896 148 PLNDIGRAIEDFAKKNGYSVVRDLTGHGVG--RSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLNLGAKDAETLDDGW 225 (255)
T ss_pred CHHHHHHHHHHHHHHcCCEeccCcccCCcC--cccccCCCccccCCCCCCCCEecCCcEEEEeceEEcCCCceEEcCCCC
Confidence 5789999999999999995 7899999999 9999999655321 225678999999999999998
Q ss_pred ----ecCcceEEEeeeEEEecCCccccCCCceeeeeeeccC
Q psy2561 68 ----EDGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITL 104 (134)
Q Consensus 68 ----~~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~ 104 (134)
.++.+|+|+||||+||++ |+|+||.
T Consensus 226 ~~~~~~~~~~~~~edtv~vt~~------------G~e~Lt~ 254 (255)
T PRK12896 226 TVVTPDKSLSAQFEHTVVVTRD------------GPEILTD 254 (255)
T ss_pred EEEecCCCeEEEEEEEEEEcCC------------cceecCC
Confidence 357789999999999999 9999995
No 20
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=99.83 E-value=1.4e-20 Score=148.25 Aligned_cols=86 Identities=14% Similarity=0.229 Sum_probs=75.0
Q ss_pred CchHHHHHHHHHHHHHcC--C--CCCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCcee-ecC------
Q psy2561 2 SQGHAIDAIARHNLWSVG--L--DYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYY-EDG------ 70 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G--~--~~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy-~~g------ 70 (134)
.++++|++++++++++.| + .+.|++||||| +++||.|.++++ .++.+|++||||+||||+| .++
T Consensus 143 ~~~~dv~~~a~~~i~~~~~~~~~~~~~~~GHgiG--le~hE~~~~l~~---~~~~~L~~GMvf~vepGi~~~~~~~~~~~ 217 (243)
T cd01091 143 AKLSDVYQKTLDYIKKKKPELEPNFTKNLGFGIG--LEFRESSLIINA---KNDRKLKKGMVFNLSIGFSNLQNPEPKDK 217 (243)
T ss_pred CcHHHHHHHHHHHHHHhChhHHHhCcCCcccccC--cccccCccccCC---CCCCCcCCCCEEEEeCCcccccCccccCc
Confidence 467899999999999987 3 37899999999 999999875655 4678999999999999999 543
Q ss_pred ---cceEEEeeeEEEecCCccccCCCceeeee-eeccC
Q psy2561 71 ---KFGIRIENIVQVIPAETKYSRKNKTFLTF-KTITL 104 (134)
Q Consensus 71 ---~~gvried~v~Vt~~~~~~~~~~~~~~G~-e~LT~ 104 (134)
.+|+|+||||+||++ |+ |+||.
T Consensus 218 ~~~~~gv~ieDtV~Vt~~------------G~~~~LT~ 243 (243)
T cd01091 218 ESKTYALLLSDTILVTED------------EPAIVLTN 243 (243)
T ss_pred cCCeeEEEEEEEEEEcCC------------CCceecCC
Confidence 579999999999999 99 99984
No 21
>PRK13607 proline dipeptidase; Provisional
Probab=99.80 E-value=7.1e-20 Score=155.12 Aligned_cols=89 Identities=25% Similarity=0.258 Sum_probs=69.9
Q ss_pred CchHHHHHHHHHHHH------------------HcCC---CCCCcceeecCCCCcccCCCCcCCC------------CCC
Q psy2561 2 SQGHAIDAIARHNLW------------------SVGL---DYLHGTGHGIGSYLNVHEGPISVSY------------LPK 48 (134)
Q Consensus 2 ~~~~~id~~~r~~l~------------------~~G~---~~~~~~GHGIG~~l~vhE~P~~~~~------------~~~ 48 (134)
.++++|+.++++++. ++|+ .++|++||||| +++||.+..... ...
T Consensus 292 ~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iG--ldvHd~~~~~~~~~~~~~~~~~~~~~l 369 (443)
T PRK13607 292 VSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLG--LQVHDVAGFMQDDRGTHLAAPEKHPYL 369 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccC--cccccCCCccccccccccccccccccc
Confidence 367899999987663 2344 37899999999 999998532110 000
Q ss_pred CCCCcccCCceeeecCceeecC-------------------------cceEEEeeeEEEecCCccccCCCceeeeeeecc
Q psy2561 49 ATDSGILADMFISDEPGYYEDG-------------------------KFGIRIENIVQVIPAETKYSRKNKTFLTFKTIT 103 (134)
Q Consensus 49 ~~~~~L~~GMV~tiEPgiy~~g-------------------------~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT 103 (134)
....+|+||||||||||+|+++ .+||||||+|+||++ |+|+||
T Consensus 370 ~~~~~L~~GmV~TvEPGiY~~~~ll~~~~~~~~~~~in~~~i~~~~~~GGvRIED~vlVT~~------------G~e~Lt 437 (443)
T PRK13607 370 RCTRVLEPGMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHEN------------GVENMT 437 (443)
T ss_pred ccCCcCCCCcEEEECCeeeeChhhhchhhhhhhhhhccHHHHHhhcCCCEEeecceEEEcCC------------CCeECC
Confidence 2457899999999999999974 579999999999999 999999
Q ss_pred C
Q psy2561 104 L 104 (134)
Q Consensus 104 ~ 104 (134)
.
T Consensus 438 ~ 438 (443)
T PRK13607 438 R 438 (443)
T ss_pred h
Confidence 6
No 22
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=99.79 E-value=4.8e-19 Score=133.69 Aligned_cols=78 Identities=38% Similarity=0.615 Sum_probs=71.7
Q ss_pred CchHHHHHHHHHHHHHcCC--CCCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeee
Q psy2561 2 SQGHAIDAIARHNLWSVGL--DYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENI 79 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~--~~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~ 79 (134)
.++++|++++++++++.|+ ++.|++||||| +++||.|. +.. +++.+|++||||+|||++|.++.+|+|+||+
T Consensus 127 ~~~~di~~~~~~~~~~~g~~~~~~~~~Gh~iG--~~~~e~p~-i~~---~~~~~l~~gmv~~iep~~~~~~~~g~~~ed~ 200 (208)
T cd01092 127 VTAKEVDKAARDVIEEAGYGEYFIHRTGHGVG--LEVHEAPY-ISP---GSDDVLEEGMVFTIEPGIYIPGKGGVRIEDD 200 (208)
T ss_pred CcHHHHHHHHHHHHHHcCccccCCCCCccccC--cccCcCCC-cCC---CCCCCcCCCCEEEECCeEEecCCCEEEeeeE
Confidence 3678999999999999999 47899999999 99999997 443 5788999999999999999999999999999
Q ss_pred EEEecC
Q psy2561 80 VQVIPA 85 (134)
Q Consensus 80 v~Vt~~ 85 (134)
|+||++
T Consensus 201 v~vt~~ 206 (208)
T cd01092 201 VLVTED 206 (208)
T ss_pred EEECCC
Confidence 999998
No 23
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.3e-18 Score=134.02 Aligned_cols=90 Identities=28% Similarity=0.335 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceee-------------
Q psy2561 3 QGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYE------------- 68 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~------------- 68 (134)
+-.+|-++++++++++||. ++.++||||| ..+||.|.++++...+...+|+|||||+|||++..
T Consensus 145 ~l~~Ig~aIq~~~~~~G~~vVr~~~GHgig--~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPmi~~G~~~~~~~~~d~W 222 (255)
T COG0024 145 RLGDIGRAIQEYAESRGFSVVRNLTGHGIG--RELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRW 222 (255)
T ss_pred CHHHHHHHHHHHHHHcCCEEeecccCCccC--cccCCCCeeccccCCCCCcccCCCCEEEEeeEEEcCCCceEecCCCCe
Confidence 4578889999999999996 8999999999 99999999998755455678999999999999975
Q ss_pred -----cCcceEEEeeeEEEecCCccccCCCceeeeeeeccCCC
Q psy2561 69 -----DGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLVP 106 (134)
Q Consensus 69 -----~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~~P 106 (134)
++...++.|+||+||++ |+|+||..+
T Consensus 223 t~~t~d~~~~aq~EHTv~Vt~~------------g~eilT~~~ 253 (255)
T COG0024 223 TLVTKDGSLSAQFEHTVIVTED------------GCEILTLRP 253 (255)
T ss_pred EEEeCCCCEEeEEEEEEEEeCC------------CcEEeeCCC
Confidence 22335689999999999 999999865
No 24
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=99.70 E-value=2.7e-17 Score=124.55 Aligned_cols=78 Identities=37% Similarity=0.544 Sum_probs=67.9
Q ss_pred CchHHHHHHHHHHHHHcCC--CCCCcceeecCCCCcccCC-CCcCCCCCCCCCCcccCCceeeecCcee-ecCcceEEEe
Q psy2561 2 SQGHAIDAIARHNLWSVGL--DYLHGTGHGIGSYLNVHEG-PISVSYLPKATDSGILADMFISDEPGYY-EDGKFGIRIE 77 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~--~~~~~~GHGIG~~l~vhE~-P~~~~~~~~~~~~~L~~GMV~tiEPgiy-~~g~~gvrie 77 (134)
.++++|++++++.++++|+ .+.+.+||||| +.+||. |.+.+. +++.+|++||||++||+++ .++.+|+++|
T Consensus 126 ~~~~~v~~~~~~~~~~~g~~~~~~~~~GH~iG--~~~~~~~P~i~~~---~~~~~l~~gmv~~iep~~~~~~~~~g~~~e 200 (207)
T PF00557_consen 126 VTGSDVYEAVREVLEEYGLEEPYPHGLGHGIG--LEFHEPGPNIARP---GDDTVLEPGMVFAIEPGLYFIPGWGGVRFE 200 (207)
T ss_dssp SBHHHHHHHHHHHHHHTTEGEEBTSSSEEEES--SSSSEEEEEESST---TTSSB--TTBEEEEEEEEEEETTSEEEEEB
T ss_pred cccchhhHHHHHHHHhhcccceeeeccccccc--ccccccceeeecc---cccceecCCCceeEeeeEEccCCCcEEEEE
Confidence 3689999999999999999 48999999999 999997 985323 5789999999999999999 6788899999
Q ss_pred eeEEEec
Q psy2561 78 NIVQVIP 84 (134)
Q Consensus 78 d~v~Vt~ 84 (134)
|+|+||+
T Consensus 201 d~v~Vte 207 (207)
T PF00557_consen 201 DTVLVTE 207 (207)
T ss_dssp EEEEEES
T ss_pred EEEEECc
Confidence 9999996
No 25
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=99.70 E-value=8.8e-17 Score=119.47 Aligned_cols=78 Identities=40% Similarity=0.628 Sum_probs=70.8
Q ss_pred CchHHHHHHHHHHHHHcCC--CCCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeee
Q psy2561 2 SQGHAIDAIARHNLWSVGL--DYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENI 79 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~--~~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~ 79 (134)
.++.+|+.++++.+++.|+ .+.|++||||| +.+||.|. ++. ..+.+|++||||++||++|.++.+|+++||+
T Consensus 126 ~~~~ei~~~~~~~~~~~g~~~~~~~~~Gh~iG--~~~~e~~~-~~~---~~~~~l~~gmv~~iep~~~~~~~~g~~~ed~ 199 (207)
T cd01066 126 VTAEEVDAAAREVLEEHGLGPNFGHRTGHGIG--LEIHEPPV-LKA---GDDTVLEPGMVFAVEPGLYLPGGGGVRIEDT 199 (207)
T ss_pred CcHHHHHHHHHHHHHHcCccccCCCCCccccC--cccCCCCC-cCC---CCCCCcCCCCEEEECCEEEECCCcEEEeeeE
Confidence 3678999999999999998 48999999999 99999997 344 5678999999999999999987889999999
Q ss_pred EEEecC
Q psy2561 80 VQVIPA 85 (134)
Q Consensus 80 v~Vt~~ 85 (134)
|+||++
T Consensus 200 v~vt~~ 205 (207)
T cd01066 200 VLVTED 205 (207)
T ss_pred EEEeCC
Confidence 999998
No 26
>KOG2414|consensus
Probab=99.68 E-value=3.6e-17 Score=136.39 Aligned_cols=73 Identities=30% Similarity=0.400 Sum_probs=65.1
Q ss_pred CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcc---------eEEEeeeEEEecCCccccCC
Q psy2561 22 YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKF---------GIRIENIVQVIPAETKYSRK 92 (134)
Q Consensus 22 ~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~---------gvried~v~Vt~~~~~~~~~ 92 (134)
++|+.||=+| ++|||.|-+.+ ..+|+||||||||||+|+|..+ |+||||+|+|+++
T Consensus 400 cPHhVgHyLG--mDVHD~p~v~r------~~pL~pg~ViTIEPGvYIP~d~d~P~~FrGIGiRIEDDV~i~ed------- 464 (488)
T KOG2414|consen 400 CPHHVGHYLG--MDVHDCPTVSR------DIPLQPGMVITIEPGVYIPEDDDPPEEFRGIGIRIEDDVAIGED------- 464 (488)
T ss_pred CCcccchhcC--cccccCCCCCC------CccCCCCceEEecCceecCccCCCchHhcCceEEeecceEeccC-------
Confidence 5899999999 99999998533 5789999999999999997543 8999999999999
Q ss_pred CceeeeeeeccC-CCccchhhhh
Q psy2561 93 NKTFLTFKTITL-VPIQTSLLCC 114 (134)
Q Consensus 93 ~~~~~G~e~LT~-~P~~~~~i~~ 114 (134)
|.|+||. +|+|.+.|+.
T Consensus 465 -----g~evLT~a~pKei~~ie~ 482 (488)
T KOG2414|consen 465 -----GPEVLTAACPKEIIEIER 482 (488)
T ss_pred -----CceeehhcccCCHHHHHH
Confidence 9999996 8999887765
No 27
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=99.65 E-value=2.3e-16 Score=122.46 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=70.0
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeE
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIV 80 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v 80 (134)
.++++|+.+++++++++|+. +...+||++|++++.++.+.. -..+|++||||++||+++.+|.+++|+||||
T Consensus 144 ~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~~~~~~~~-------~~~~l~~gmvf~~ep~~~~~g~~~~~~~~Tv 216 (228)
T cd01089 144 NQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEGKAK-------LVECVKHGLLFPYPVLYEKEGEVVAQFKLTV 216 (228)
T ss_pred CcHHHHHHHHHHHHHHcCCEEecCccccCcCceEecCCCCcc-------chhhccCCcccccceeEccCCCeEEEEEEEE
Confidence 46789999999999999974 455555555555667776631 2578999999999999999999999999999
Q ss_pred EEecCCccccCCCceeeeeeeccC
Q psy2561 81 QVIPAETKYSRKNKTFLTFKTITL 104 (134)
Q Consensus 81 ~Vt~~~~~~~~~~~~~~G~e~LT~ 104 (134)
+||++ |+|.||.
T Consensus 217 ~vt~~------------G~e~lt~ 228 (228)
T cd01089 217 LLTPN------------GVTVLTG 228 (228)
T ss_pred EEcCC------------CCeeCCC
Confidence 99999 9999983
No 28
>KOG2737|consensus
Probab=99.59 E-value=7.4e-16 Score=127.80 Aligned_cols=82 Identities=32% Similarity=0.353 Sum_probs=66.3
Q ss_pred CCCCcceeecCCCCcccCCCCcC-CCCC--------CCCCCcccCCceeeecCceee-----------------------
Q psy2561 21 DYLHGTGHGIGSYLNVHEGPISV-SYLP--------KATDSGILADMFISDEPGYYE----------------------- 68 (134)
Q Consensus 21 ~~~~~~GHGIG~~l~vhE~P~~~-~~~~--------~~~~~~L~~GMV~tiEPgiy~----------------------- 68 (134)
.++|+.||=+| +++|+..--+ +..+ ....+.|++|||+|+|||+|+
T Consensus 362 F~PHGLGH~lG--lDvHDvGGyp~~~~rp~~P~l~~LR~aR~L~e~MviTvEPGcYFi~~Ll~ealadp~~~~f~n~e~~ 439 (492)
T KOG2737|consen 362 FMPHGLGHFLG--LDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGCYFIDFLLDEALADPARAEFLNREVL 439 (492)
T ss_pred ecccccccccc--ccccccCCCCCCCCCCCcchhhhhhhhhhhhcCcEEEecCChhHHHHHHHHHhcChHhhhhhhHHHH
Confidence 36899999999 9999833111 1111 134578999999999999997
Q ss_pred ---cCcceEEEeeeEEEecCCccccCCCceeeeeeeccCCCccchhhhhcc
Q psy2561 69 ---DGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLVPIQTSLLCCNM 116 (134)
Q Consensus 69 ---~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~~i~~~l 116 (134)
.+.+|+||||+|+||++ |+|+||.+|++...|++-|
T Consensus 440 ~rfr~~GGVRIEdDv~vt~~------------G~enlt~vprtveeIEa~m 478 (492)
T KOG2737|consen 440 QRFRGFGGVRIEDDVVVTKS------------GIENLTCVPRTVEEIEACM 478 (492)
T ss_pred HHhhccCceEeeccEEEecc------------ccccccCCCCCHHHHHHHH
Confidence 36789999999999999 9999999999999887644
No 29
>KOG2738|consensus
Probab=99.57 E-value=4.2e-15 Score=120.12 Aligned_cols=88 Identities=22% Similarity=0.194 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceee--------------
Q psy2561 4 GHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYE-------------- 68 (134)
Q Consensus 4 ~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~-------------- 68 (134)
-.+|..++.+...+.||. ++.++||||| .-+|-.|.+.++.......++.+||+||||||+..
T Consensus 255 freiG~iI~kha~~~g~sVVr~ycGHGig--~~FH~~PnipHya~n~a~GvM~~G~tFTIEPmit~G~~~d~tWPD~WT~ 332 (369)
T KOG2738|consen 255 FREIGNIIQKHATKNGYSVVRSYCGHGIG--RVFHCAPNIPHYAKNKAPGVMKPGQTFTIEPMITIGTWEDITWPDDWTA 332 (369)
T ss_pred HHHHHHHHHHHhhhcCceeehhhhccccc--cccccCCCchhhcccCCcceeecCceEEeeeeecccccccccCCCCceE
Confidence 467888899999999998 8999999999 99999999888865445678999999999999965
Q ss_pred ---cCcceEEEeeeEEEecCCccccCCCceeeeeeeccCC
Q psy2561 69 ---DGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLV 105 (134)
Q Consensus 69 ---~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~~ 105 (134)
+|+..+++|+|++||++ |+|+||..
T Consensus 333 vTaDG~~sAQFEhTlLVT~t------------G~EILT~r 360 (369)
T KOG2738|consen 333 VTADGKRSAQFEHTLLVTET------------GCEILTKR 360 (369)
T ss_pred EecCCceecceeeEEEEecc------------cceehhcc
Confidence 34446799999999999 99999974
No 30
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.42 E-value=9.3e-13 Score=106.15 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCC-cccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEE
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYL-NVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIR 75 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l-~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvr 75 (134)
.+.++|+++++++++++|+. +.+++||||| + .+||+|.+.+... +++.+|++||||+|||++. .|.+.++
T Consensus 125 ~~~~dv~~~i~~vi~~~G~~~~~~~~GHgiG--~~~~he~p~ip~~~~-~~~~~le~GmV~aIEp~~t-~G~G~v~ 196 (291)
T PRK08671 125 VSVGEIGRVIEETIRSYGFKPIRNLTGHGLE--RYELHAGPSIPNYDE-GGGVKLEEGDVYAIEPFAT-DGEGKVV 196 (291)
T ss_pred CCHHHHHHHHHHHHHHcCCcccCCCcccCcC--CCcccCCCccCccCC-CCCceeCCCCEEEEcceEE-CCCCeEe
Confidence 36789999999999999995 7899999999 7 7899998654322 5678999999999999876 5555444
No 31
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.34 E-value=9e-12 Score=104.39 Aligned_cols=111 Identities=10% Similarity=0.044 Sum_probs=85.8
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccC-CCCc-CCCCC----CCCCCcccCCceeeecCceee------
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHE-GPIS-VSYLP----KATDSGILADMFISDEPGYYE------ 68 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE-~P~~-~~~~~----~~~~~~L~~GMV~tiEPgiy~------ 68 (134)
.+.++|+.+++++++++|+. +.+.+||||| ..+|| .|.+ .++.. ......|++|||++|||++..
T Consensus 162 ~~~~dI~~ai~~v~~~~G~~~v~~~~gH~ig--r~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs~G~g~v~ 239 (389)
T TIGR00495 162 NTNTQVTEAINKVAHSYGCTPVEGMLSHQLK--QHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVSTGEGKAK 239 (389)
T ss_pred CcHHHHHHHHHHHHHHcCCeecCCceeeccc--ceeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeecCCCceEE
Confidence 35789999999999999996 8999999999 99998 7764 33321 124568999999999998854
Q ss_pred -------------------------------------------------------------------------cCcceEE
Q psy2561 69 -------------------------------------------------------------------------DGKFGIR 75 (134)
Q Consensus 69 -------------------------------------------------------------------------~g~~gvr 75 (134)
+|..-.|
T Consensus 240 ~~~~~~tiy~~~~~~~y~lk~~~sr~~l~ei~~~f~~~PF~~R~l~~~~~~~~gl~e~~~~~~l~~ypvl~e~~g~~Vaq 319 (389)
T TIGR00495 240 DADQRTTIYKRDPSKTYGLKMKASRAFFSEIERRFDAMPFTLRNFEDEKRARMGLVECVKHELLQPYPVLYEKEGEFVAQ 319 (389)
T ss_pred ECCCeeEEEEECCCCCcCCCCHHHHHHHHHHHHhCCCCCcchHHhcchhhHHHHHHHHHHCCCcccCCceEeeCCCeEEE
Confidence 1223347
Q ss_pred EeeeEEEecCCccccCCCceeeeeeeccCCCccchhh--hhccCCHHHHHHHH
Q psy2561 76 IENIVQVIPAETKYSRKNKTFLTFKTITLVPIQTSLL--CCNMLTADEVSRIE 126 (134)
Q Consensus 76 ied~v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~~i--~~~ll~~~e~~wln 126 (134)
++.||+|+++ |++++|..|+++..+ ++++-+++-++||.
T Consensus 320 f~~Tv~v~~~------------g~~~~t~~~~~~~~~~s~~~~~d~~~~~~l~ 360 (389)
T TIGR00495 320 FKFTVLLMPN------------GPMRITSGEFEPDLYKSEMEVQDPEIKALLA 360 (389)
T ss_pred EEEEEEECCC------------CcEEeCCCCCCHhhcCCCCCCCCHHHHHHHh
Confidence 7889999999 999999977766655 56676666667764
No 32
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.33 E-value=5.1e-12 Score=101.84 Aligned_cols=71 Identities=18% Similarity=0.082 Sum_probs=57.3
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCC-cccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEE
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYL-NVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRI 76 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l-~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvri 76 (134)
.+.++|+++++++++++|+. +.+++||||| . .+|+.|.+++... +++.+|++||||+|||++. .|.+.++.
T Consensus 124 ~~~~dV~~ai~~~i~~~G~~~~~~~~GHgig--~~~~h~~~~ip~~~~-~~~~~le~gmV~aIEp~~s-~G~G~v~~ 196 (291)
T cd01088 124 VRLGEIGEAIEEVIESYGFKPIRNLTGHSIE--RYRLHAGKSIPNVKG-GEGTRLEEGDVYAIEPFAT-TGKGYVHD 196 (291)
T ss_pred CcHHHHHHHHHHHHHHcCCEEeecCCccCcc--CccccCCCccCccCC-CCCCEeCCCCEEEEceeEE-CCCCeeec
Confidence 46789999999999999995 7899999999 6 6799876544322 4678999999999999765 67666554
No 33
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.27 E-value=1.9e-11 Score=104.59 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=54.5
Q ss_pred CchHHHHHHHHHHHHHcCCC----------CCCcceeecCCCC-cccCCCCcCCCCCCCCCCcccCCceeeecCceeecC
Q psy2561 2 SQGHAIDAIARHNLWSVGLD----------YLHGTGHGIGSYL-NVHEGPISVSYLPKATDSGILADMFISDEPGYYEDG 70 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~----------~~~~~GHGIG~~l-~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g 70 (134)
.+.++|+++++++++++||. +.|++||||| + .+|++|.++... .++..+|++||||+|||++. .|
T Consensus 287 v~~~dI~~AIqevies~G~e~~Gk~f~~k~I~nltGHgIG--~y~iHe~k~iP~v~-~~~~~~LeeGmVfaIEPf~s-tG 362 (470)
T PTZ00053 287 VRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNGHSIG--PYIIHGGKSVPIVK-GGENTRMEEGELFAIETFAS-TG 362 (470)
T ss_pred CcHHHHHHHHHHHHHHcCCcccCcccccccccCCcccCCC--CccccCCCcCCeeC-CCCCCEecCCCEEEEcceee-CC
Confidence 35789999999999999973 4799999999 8 899977654432 25678999999999999987 35
Q ss_pred cc
Q psy2561 71 KF 72 (134)
Q Consensus 71 ~~ 72 (134)
.+
T Consensus 363 ~G 364 (470)
T PTZ00053 363 RG 364 (470)
T ss_pred CC
Confidence 43
No 34
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.25 E-value=2.6e-11 Score=98.02 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEee
Q psy2561 2 SQGHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIEN 78 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried 78 (134)
.+.++|+++++++++++|+. +.+++|||||.| .+|+++.+.+... +++.+|++||||+|||++. .|.+.++-++
T Consensus 128 v~~~dV~~ai~~vi~~~G~~~i~~~~GHgig~~-~~h~g~~ip~i~~-~~~~~le~GmV~aIEP~~~-~G~G~v~~~~ 202 (295)
T TIGR00501 128 VRVGEIGKAIQEVIESYGVKPISNLTGHSMAPY-RLHGGKSIPNVKE-RDTTKLEEGDVVAIEPFAT-DGVGYVTDGG 202 (295)
T ss_pred CCHHHHHHHHHHHHHHcCCeeecCCCCcceecc-cccCCCccCeecC-CCCCEeCCCCEEEEceeEE-CCcCeEecCC
Confidence 36789999999999999995 889999999932 5788765432221 4678999999999999765 6766555444
No 35
>KOG1189|consensus
Probab=97.97 E-value=9.2e-06 Score=72.88 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=78.3
Q ss_pred CchHHHHHHHHHHHHHcCCC----CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceee------cCc
Q psy2561 2 SQGHAIDAIARHNLWSVGLD----YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYE------DGK 71 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~----~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~------~g~ 71 (134)
++-.+|+.++-.++.+.+-. +.-..|-||| |.+.|.-.+++. .++.+|++||||.|--|+-- .+.
T Consensus 281 ~ki~dVY~~~l~~v~k~~Pel~~~~~k~lG~~iG--lEFREssl~ina---Knd~~lk~gmvFni~lGf~nl~n~~~~~~ 355 (960)
T KOG1189|consen 281 TKIGDVYEKALDYVEKNKPELVPNFTKNLGFGIG--LEFRESSLVINA---KNDRVLKKGMVFNISLGFSNLTNPESKNS 355 (960)
T ss_pred CchhHHHHHHHHHHHhcCcchhhhhhhhcccccc--eeeecccccccc---cchhhhccCcEEEEeeccccccCcccccc
Confidence 34578899999999998873 4555899999 999999988876 47899999999999776632 234
Q ss_pred ceEEEeeeEEEecCCccccCCCceeeee-eeccCCCccchhhhhccC
Q psy2561 72 FGIRIENIVQVIPAETKYSRKNKTFLTF-KTITLVPIQTSLLCCNML 117 (134)
Q Consensus 72 ~gvried~v~Vt~~~~~~~~~~~~~~G~-e~LT~~P~~~~~i~~~ll 117 (134)
+..-+.|||+|+++ ++ ++||.++....-+....-
T Consensus 356 yaL~l~DTvlv~e~------------~p~~vLT~~~K~~~dv~~~f~ 390 (960)
T KOG1189|consen 356 YALLLSDTVLVGED------------PPAEVLTDSAKAVKDVSYFFK 390 (960)
T ss_pred hhhhccceeeecCC------------Ccchhhcccchhhcccceeec
Confidence 67789999999999 65 899988877665544333
No 36
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=94.23 E-value=0.07 Score=48.07 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=59.6
Q ss_pred CchHHHHHHHHHHHHHcCCC----CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceee------cCc
Q psy2561 2 SQGHAIDAIARHNLWSVGLD----YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYE------DGK 71 (134)
Q Consensus 2 ~~~~~id~~~r~~l~~~G~~----~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~------~g~ 71 (134)
+....|+.-+..++.+.|.. |....|-+|| +.+.+.-.+++. .++++||.||+|.|--|.-- .+.
T Consensus 322 ~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~ig--iefR~s~~~~nv---kn~r~lq~g~~fnis~gf~nl~~~~~~Nn 396 (1001)
T COG5406 322 TDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIG--IEFRSSQKPFNV---KNGRVLQAGCIFNISLGFGNLINPHPKNN 396 (1001)
T ss_pred CCchhHHHHHHHHHHhcCCccCchHhhhhhhhcc--ccccccccceec---cCCceeccccEEEEeecccccCCCCcccc
Confidence 34567888899999998884 4556899999 988876665555 46799999999998665532 234
Q ss_pred ceEEEeeeEEEecC
Q psy2561 72 FGIRIENIVQVIPA 85 (134)
Q Consensus 72 ~gvried~v~Vt~~ 85 (134)
++..+-||+.|+-+
T Consensus 397 yal~l~dt~qi~ls 410 (1001)
T COG5406 397 YALLLIDTEQISLS 410 (1001)
T ss_pred hhhhhccceEeecC
Confidence 56778888888877
No 37
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=90.16 E-value=1.8 Score=33.10 Aligned_cols=76 Identities=17% Similarity=0.098 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHHHcCCC-CC-Cccee--ecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEee
Q psy2561 3 QGHAIDAIARHNLWSVGLD-YL-HGTGH--GIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIEN 78 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~-~~-~~~GH--GIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried 78 (134)
+-.+|.+++++.+++.|.. .. ..-++ .+. ..... ...+.. ..+++|++|+++.++.+....| +...++.
T Consensus 27 tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~--~~~h~~--~~~~~l~~Gd~v~id~g~~~~G-Y~ad~~R 99 (238)
T cd01086 27 TTKELDQIAHEFIEEHGAYPAPLGYYGFPKSIC--TSVNE--VVCHGI--PDDRVLKDGDIVNIDVGVELDG-YHGDSAR 99 (238)
T ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCccee--cCCCC--ceeCCC--CCCcccCCCCEEEEEEEEEECC-EEEEEEE
Confidence 4568888889999998874 11 11111 111 11111 011111 2467899999999999987644 5669999
Q ss_pred eEEEecC
Q psy2561 79 IVQVIPA 85 (134)
Q Consensus 79 ~v~Vt~~ 85 (134)
|+.+.+.
T Consensus 100 T~~~G~~ 106 (238)
T cd01086 100 TFIVGEV 106 (238)
T ss_pred EEECCCC
Confidence 9999753
No 38
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=88.22 E-value=2.6 Score=33.98 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcceeecCCCCcccCCCCcCCCCC-CCCCCcccCCceeeecCceeecCcceEEEeeeEE
Q psy2561 3 QGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLP-KATDSGILADMFISDEPGYYEDGKFGIRIENIVQ 81 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~~~~~~GHGIG~~l~vhE~P~~~~~~~-~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v~ 81 (134)
+-.+|++.+++.+.+.|.. .++..+ +++.+.. .++.+ .+++.+|++|+++.++.|...+| +-.-+..|+.
T Consensus 27 te~ei~~~~~~~i~~~G~~----~afp~~--is~n~~~--~H~~p~~~d~~~l~~GDvV~iD~G~~~dG-Y~sD~arT~~ 97 (291)
T cd01088 27 TLLEIAEFVENRIRELGAG----PAFPVN--LSINECA--AHYTPNAGDDTVLKEGDVVKLDFGAHVDG-YIADSAFTVD 97 (291)
T ss_pred cHHHHHHHHHHHHHHcCCC----CCCCce--eccCCEe--eCCCCCCCCCcccCCCCEEEEEEEEEECC-EEEEEEEEEe
Confidence 4568888888888888753 223333 3333322 11211 13567899999999999998754 3444555555
Q ss_pred Ee
Q psy2561 82 VI 83 (134)
Q Consensus 82 Vt 83 (134)
+.
T Consensus 98 vg 99 (291)
T cd01088 98 FD 99 (291)
T ss_pred cC
Confidence 54
No 39
>PLN03158 methionine aminopeptidase; Provisional
Probab=87.81 E-value=2.2 Score=36.27 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHHcCCC--CCCcceee--cCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEee
Q psy2561 3 QGHAIDAIARHNLWSVGLD--YLHGTGHG--IGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIEN 78 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~--~~~~~GHG--IG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried 78 (134)
+-.+|++++++.+.++|.+ ...+.+.. +. .++.+ .+.+.. .++++|++|+++.++.+.+..| +..-+..
T Consensus 169 Te~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svc--ts~N~--~i~Hgi--p~~r~L~~GDiV~iDvg~~~~G-Y~aD~tR 241 (396)
T PLN03158 169 TTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCC--TSVNE--VICHGI--PDARKLEDGDIVNVDVTVYYKG-CHGDLNE 241 (396)
T ss_pred CHHHHHHHHHHHHHHcCCccccccccCCCceee--ecccc--cccCCC--CCCccCCCCCEEEEEEeEEECC-EEEeEEe
Confidence 4468888888888777642 11111111 11 11222 111111 2467899999999999999865 4558899
Q ss_pred eEEEec
Q psy2561 79 IVQVIP 84 (134)
Q Consensus 79 ~v~Vt~ 84 (134)
|+.|.+
T Consensus 242 T~~VG~ 247 (396)
T PLN03158 242 TFFVGN 247 (396)
T ss_pred EEEcCC
Confidence 999865
No 40
>PRK05716 methionine aminopeptidase; Validated
Probab=84.99 E-value=5.3 Score=30.81 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHHHcCCC--CCCcceee----cCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEE
Q psy2561 3 QGHAIDAIARHNLWSVGLD--YLHGTGHG----IGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRI 76 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~--~~~~~GHG----IG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvri 76 (134)
+-.+|++++++.+.+.|.. +....+++ .| .+ . ...+.. .++++|++|+++.++.+... +.+..-+
T Consensus 37 se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g--~~--~--~~~h~~--~~~~~l~~Gd~v~id~g~~~-~gY~~d~ 107 (252)
T PRK05716 37 TTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTS--VN--E--VVCHGI--PSDKVLKEGDIVNIDVTVIK-DGYHGDT 107 (252)
T ss_pred CHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEec--cc--c--eeecCC--CCCcccCCCCEEEEEEEEEE-CCEEEEe
Confidence 4568888888888888863 11111111 11 11 0 111111 24678999999999999876 4456788
Q ss_pred eeeEEEec
Q psy2561 77 ENIVQVIP 84 (134)
Q Consensus 77 ed~v~Vt~ 84 (134)
..|+.+.+
T Consensus 108 ~RT~~vG~ 115 (252)
T PRK05716 108 SRTFGVGE 115 (252)
T ss_pred EEEEECCC
Confidence 88888854
No 41
>KOG2775|consensus
Probab=81.46 E-value=1.3 Score=36.81 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCC----------CCCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCcee
Q psy2561 5 HAIDAIARHNLWSVGL----------DYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYY 67 (134)
Q Consensus 5 ~~id~~~r~~l~~~G~----------~~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy 67 (134)
.+|.+++++++.++-. .+++..||+|+.|. +|-+-.+.. -+.++.+.+++|.+++||..-.
T Consensus 217 cdiG~aiqEVmeSyEvEi~Gk~~~VKpIrnLnGHSI~~yr-IH~gksVPi-Vkgge~trmee~e~yAIETFgS 287 (397)
T KOG2775|consen 217 CDIGEAIQEVMESYEVEINGKTYQVKPIRNLNGHSIAQYR-IHGGKSVPI-VKGGEQTRMEEGEIYAIETFGS 287 (397)
T ss_pred hhhhHHHHHHhhheEEEeCCceecceeccccCCCcccceE-eecCcccce-ecCCcceeecCCeeEEEEeecc
Confidence 4677888888888643 14788999999776 564332211 1126788999999999998443
No 42
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=65.87 E-value=15 Score=29.52 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHHHcCCC--CCCcce--eecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEee
Q psy2561 3 QGHAIDAIARHNLWSVGLD--YLHGTG--HGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIEN 78 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~--~~~~~G--HGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried 78 (134)
+-.+||.++++.+.+.|.. +..+-| -.+. +++.|.-. ++-+ +++.+|++|.++.|.-++..+|..| -..-
T Consensus 37 tt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~c--iSvNe~v~--HgiP-~d~~vlk~GDiv~IDvg~~~dG~~~-Dsa~ 110 (255)
T COG0024 37 TTLELDEIAEEFIREKGAYPAFLGYKGFPFPTC--ISVNEVVA--HGIP-GDKKVLKEGDIVKIDVGAHIDGYIG-DTAI 110 (255)
T ss_pred CHHHHHHHHHHHHHHcCceehhccCcCCCcceE--eehhheee--ecCC-CCCcccCCCCEEEEEEEEEECCeee-eEEE
Confidence 5578999999999987773 222222 3344 56654332 2222 3678999999999999999876533 3344
Q ss_pred eEEEec
Q psy2561 79 IVQVIP 84 (134)
Q Consensus 79 ~v~Vt~ 84 (134)
|+.|.+
T Consensus 111 T~~vg~ 116 (255)
T COG0024 111 TFVVGE 116 (255)
T ss_pred EEECCC
Confidence 566653
No 43
>PRK12896 methionine aminopeptidase; Reviewed
Probab=60.15 E-value=49 Score=25.42 Aligned_cols=72 Identities=21% Similarity=0.124 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHcCCC--CCCccee----ecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEe
Q psy2561 4 GHAIDAIARHNLWSVGLD--YLHGTGH----GIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIE 77 (134)
Q Consensus 4 ~~~id~~~r~~l~~~G~~--~~~~~GH----GIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvrie 77 (134)
-.+|++.+++.+.+.|.. +....+. ..| .+ ...+ +.. .++.+|++|.++.++.+....| +..-+.
T Consensus 43 e~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~n-~~~~---h~~--p~~~~l~~Gd~v~iD~g~~~~g-Y~aD~~ 113 (255)
T PRK12896 43 TKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCIS--VN-EEVA---HGI--PGPRVIKDGDLVNIDVSAYLDG-YHGDTG 113 (255)
T ss_pred HHHHHHHHHHHHHHCCCEeCcccCCCCCcceEec--CC-CeeE---ecC--CCCccCCCCCEEEEEEeEEECc-EEEeeE
Confidence 367888888888888863 1111111 112 11 1111 111 1357899999999999987644 566778
Q ss_pred eeEEEec
Q psy2561 78 NIVQVIP 84 (134)
Q Consensus 78 d~v~Vt~ 84 (134)
.|+.+.+
T Consensus 114 RT~~vG~ 120 (255)
T PRK12896 114 ITFAVGP 120 (255)
T ss_pred EEEECCC
Confidence 8888754
No 44
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=57.74 E-value=14 Score=29.34 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=20.7
Q ss_pred CCCCcccCCceeeecCceeec---CcceEEEeeeEEEecC
Q psy2561 49 ATDSGILADMFISDEPGYYED---GKFGIRIENIVQVIPA 85 (134)
Q Consensus 49 ~~~~~L~~GMV~tiEPgiy~~---g~~gvried~v~Vt~~ 85 (134)
+....|.||.-+||.|++|.. ..+++-+.+.-.|.+|
T Consensus 153 G~~l~L~PGESiTL~Pg~yH~Fw~e~g~vLigEVStvNDD 192 (225)
T PF07385_consen 153 GTQLRLNPGESITLPPGIYHWFWGEGGDVLIGEVSTVNDD 192 (225)
T ss_dssp T-EEEE-TT-EEEE-TTEEEEEEE-TTSEEEEEEEE---T
T ss_pred CceEEeCCCCeEeeCCCCeeeEEecCCCEEEEeeecccCC
Confidence 667789999999999999862 2334555555555555
No 45
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=56.63 E-value=31 Score=22.39 Aligned_cols=53 Identities=8% Similarity=-0.033 Sum_probs=30.4
Q ss_pred ceeecCcceEEEeeeEEEecCCccccCCCceeeeeeeccCCCccchhhhhccCCHHHHHHHHhhh
Q psy2561 65 GYYEDGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLVPIQTSLLCCNMLTADEVSRIEYTL 129 (134)
Q Consensus 65 giy~~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~~i~~~ll~~~e~~wln~y~ 129 (134)
-.|.+..+.+++|-.++-..+ |--.|-..--...-+-.+-||.++.+|+.+--
T Consensus 13 RtWtD~tG~f~VeA~fv~~~d------------gkV~L~k~nG~~i~VP~~kLS~~D~~yve~~t 65 (70)
T PF03983_consen 13 RTWTDRTGKFKVEAEFVGVND------------GKVHLHKTNGVKIAVPLEKLSDEDQEYVEKIT 65 (70)
T ss_dssp EEEEBSSS--EEEEEEEEEET------------TEEEEE-TTS-EEEEETTSB-HHHHHHHHHHH
T ss_pred eEEEeCCCCEEEEEEEEEeeC------------CEEEEEecCCeEEEeEhHHcCHHHHHHHHHHh
Confidence 346666677788877665555 44444433333333445679999999998753
No 46
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=52.15 E-value=14 Score=28.88 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=25.1
Q ss_pred CCCCcccCCceeeecCceee---cCcceEEEeeeEEEecC
Q psy2561 49 ATDSGILADMFISDEPGYYE---DGKFGIRIENIVQVIPA 85 (134)
Q Consensus 49 ~~~~~L~~GMV~tiEPgiy~---~g~~gvried~v~Vt~~ 85 (134)
+....|+||.-+|+-|++|. .+.+++-+.+.-.|.+|
T Consensus 152 g~~lkL~PGesitL~Pg~~HsFwae~g~vlvgEvSsvndD 191 (225)
T COG3822 152 GSQLKLSPGESITLPPGLYHSFWAEEGGVLVGEVSSVNDD 191 (225)
T ss_pred ceeEEECCCCcEecCCCceeeeeecCCcEEEEEEeeccCc
Confidence 44567999999999999985 23344555555555544
No 47
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=47.94 E-value=1.1e+02 Score=25.80 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=28.0
Q ss_pred CCcccCCceeeecCceeecCcceEEEeeeEEEec
Q psy2561 51 DSGILADMFISDEPGYYEDGKFGIRIENIVQVIP 84 (134)
Q Consensus 51 ~~~L~~GMV~tiEPgiy~~g~~gvried~v~Vt~ 84 (134)
+++|++|.++.|.-|...+| +..-+..|+.|.+
T Consensus 98 ~~~Lk~GDvVkIDlG~~idG-Y~aD~arTv~vG~ 130 (389)
T TIGR00495 98 DYILKEGDVVKIDLGCHIDG-FIALVAHTFVVGV 130 (389)
T ss_pred CcCcCCCCEEEEEEEEEECC-EEEEEEEEEEECC
Confidence 47899999999999998755 6777889999964
No 48
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=43.58 E-value=1.4e+02 Score=24.02 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHcCCC--CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeEE
Q psy2561 4 GHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIVQ 81 (134)
Q Consensus 4 ~~~id~~~r~~l~~~G~~--~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v~ 81 (134)
-.+|.+...+.+.+.|-. |+..+. +++. ..|-.|. . +++.+|++|.++.++-|...+| +-.-+..|+.
T Consensus 32 e~el~~~~e~~~~~~g~~~aFp~~vs--~n~~-~~H~~p~---~---~d~~~l~~GDvV~iD~G~~~dG-Y~aD~arT~~ 101 (295)
T TIGR00501 32 LLEVAEFVENRIRELGAEPAFPCNIS--INEC-AAHFTPK---A---GDKTVFKDGDVVKLDLGAHVDG-YIADTAITVD 101 (295)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCccee--cCCE-eeCCCCC---C---CcCccCCCCCEEEEEEeEEECC-EEEEEEEEEE
Confidence 456777778888877764 222111 2210 1132221 1 3456899999999999998755 5566677777
Q ss_pred Eec
Q psy2561 82 VIP 84 (134)
Q Consensus 82 Vt~ 84 (134)
+.+
T Consensus 102 vG~ 104 (295)
T TIGR00501 102 LGD 104 (295)
T ss_pred eCc
Confidence 753
No 49
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=42.19 E-value=14 Score=24.08 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=22.3
Q ss_pred HHHHHHcCCCCCCccee--------ecCCCCc----ccCCCCcCCCCCCCCCCcccCCceeee
Q psy2561 12 RHNLWSVGLDYLHGTGH--------GIGSYLN----VHEGPISVSYLPKATDSGILADMFISD 62 (134)
Q Consensus 12 r~~l~~~G~~~~~~~GH--------GIG~~l~----vhE~P~~~~~~~~~~~~~L~~GMV~ti 62 (134)
-+++.++|+.+++.+.| ++|++.. +...|.+. ...+++++||++.-
T Consensus 22 l~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~-----AC~t~v~~GM~V~T 79 (82)
T PF13510_consen 22 LEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVR-----ACSTPVEDGMVVET 79 (82)
T ss_dssp HHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEE-----TTT-B--TTEEEE-
T ss_pred HHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceE-----cccCCCcCCcEEEE
Confidence 45678889988888877 2443332 11222211 46788999998753
No 50
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=35.21 E-value=27 Score=23.17 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=13.7
Q ss_pred ccCCHHHHHH----HHhhhhh
Q psy2561 115 NMLTADEVSR----IEYTLFI 131 (134)
Q Consensus 115 ~ll~~~e~~w----ln~y~~~ 131 (134)
.+||+.|++. ||+||+-
T Consensus 14 ~lLs~~Er~~f~h~Ln~Y~~~ 34 (78)
T cd07356 14 KLLSEAEREEFIHCLNDYHAK 34 (78)
T ss_pred HHccHHHHHHHHHHHHHHHhc
Confidence 4799999876 7999963
No 51
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=33.31 E-value=1.8e+02 Score=20.69 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeEEEe
Q psy2561 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIVQVI 83 (134)
Q Consensus 4 ~~~id~~~r~~l~~~G~~~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v~Vt 83 (134)
-.++.+..++.+.+.|......+-=+.| +.....++. .++.++++|.++.++-+.... .+-.-+..|+.+.
T Consensus 28 e~ei~~~~~~~~~~~g~~~~~~~~v~~g------~~~~~~h~~--~~~~~i~~gd~v~~d~g~~~~-gy~~d~~rt~~~g 98 (207)
T cd01066 28 EAEVAAAIEQALRAAGGYPAGPTIVGSG------ARTALPHYR--PDDRRLQEGDLVLVDLGGVYD-GYHADLTRTFVIG 98 (207)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEEC------ccccCcCCC--CCCCCcCCCCEEEEEeceeEC-CCccceeceeEcC
Confidence 4577777888888777632222222222 111112222 235789999999999998764 3456677788876
Q ss_pred c
Q psy2561 84 P 84 (134)
Q Consensus 84 ~ 84 (134)
+
T Consensus 99 ~ 99 (207)
T cd01066 99 E 99 (207)
T ss_pred C
Confidence 4
No 52
>KOG2738|consensus
Probab=32.01 E-value=1.3e+02 Score=25.30 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHHHcCCC--CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeE
Q psy2561 3 QGHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIV 80 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~--~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v 80 (134)
+-.+||.++-+..-++|-+ -..+.|-.--.|.+|.|.-. +.- .+.++||.|.++.|.-.+|..|-.| -+.+|+
T Consensus 148 TTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviC--HGI--PD~RpLedGDIvNiDVtvY~~GyHG-DlneTf 222 (369)
T KOG2738|consen 148 TTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVIC--HGI--PDSRPLEDGDIVNIDVTVYLNGYHG-DLNETF 222 (369)
T ss_pred cHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheee--cCC--CCcCcCCCCCEEeEEEEEEeccccC-ccccce
Confidence 3456777776666555542 12222222222244444221 110 3678999999999999999866544 466777
Q ss_pred EEecC
Q psy2561 81 QVIPA 85 (134)
Q Consensus 81 ~Vt~~ 85 (134)
.|.+-
T Consensus 223 fvG~V 227 (369)
T KOG2738|consen 223 FVGNV 227 (369)
T ss_pred Eeecc
Confidence 77653
No 53
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=31.84 E-value=2.3e+02 Score=21.52 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeEEE
Q psy2561 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIVQV 82 (134)
Q Consensus 4 ~~~id~~~r~~l~~~G~~~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v~V 82 (134)
-.+|++.+++.+.+.|.. .. ...-++ .... ....++. .++.+|++|.++.++-+.... .+-.-+..|+.|
T Consensus 28 E~ei~~~~~~~~~~~G~~-~~-~~~~v~--~g~~--~~~~H~~--~~~~~l~~Gd~v~vD~g~~~~-GY~ad~~Rt~~v 97 (243)
T cd01087 28 EYELEAEFEYEFRSRGAR-LA-YSYIVA--AGSN--AAILHYV--HNDQPLKDGDLVLIDAGAEYG-GYASDITRTFPV 97 (243)
T ss_pred HHHHHHHHHHHHHHcCCC-cC-CCCeEE--ECCC--ccccCCC--cCCCcCCCCCEEEEEeCceEC-CEeeeeeEEEEe
Confidence 467888888888888865 11 111122 1111 1112221 246789999999999988654 345567777777
No 54
>KOG3303|consensus
Probab=31.82 E-value=27 Score=26.94 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=14.4
Q ss_pred CCHHHHHHHHhhhhhc
Q psy2561 117 LTADEVSRIEYTLFIL 132 (134)
Q Consensus 117 l~~~e~~wln~y~~~~ 132 (134)
|+.+|.+|+|+|-..|
T Consensus 109 ls~~E~eyf~~Ys~~L 124 (192)
T KOG3303|consen 109 LSHEEEEYFKNYSNLL 124 (192)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8899999999998765
No 55
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=31.47 E-value=29 Score=26.71 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCCCCCcceeec-CCCCc-ccCCCCcCCCCCCCCCCcccC-Cc-eeeecCce
Q psy2561 19 GLDYLHGTGHGI-GSYLN-VHEGPISVSYLPKATDSGILA-DM-FISDEPGY 66 (134)
Q Consensus 19 G~~~~~~~GHGI-G~~l~-vhE~P~~~~~~~~~~~~~L~~-GM-V~tiEPgi 66 (134)
.+.++.++++|+ |++.- +...|. ++ ..+.+++ || +++|||.-
T Consensus 41 ~l~~~~~C~~g~Cg~C~v~vnG~~~-la-----C~t~v~~~g~~~~~iepl~ 86 (220)
T TIGR00384 41 SLAFRRSCRNGICGSCAMNVNGKPV-LA-----CKTKVEDLGQPVMKIEPLP 86 (220)
T ss_pred CceeecccCCCCCCCCeeEECCEEh-hh-----hhChHHHcCCCcEEEeeCC
Confidence 345777787777 54432 232233 22 4677777 99 59999954
No 56
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=29.75 E-value=80 Score=22.81 Aligned_cols=30 Identities=27% Similarity=0.557 Sum_probs=20.2
Q ss_pred CCceeeec--Cc---eeecCcceEEEeee-----EEEecC
Q psy2561 56 ADMFISDE--PG---YYEDGKFGIRIENI-----VQVIPA 85 (134)
Q Consensus 56 ~GMV~tiE--Pg---iy~~g~~gvried~-----v~Vt~~ 85 (134)
.||.|.-+ |+ ++..|.+|+|+-++ ++|-++
T Consensus 3 k~m~~~e~~~Pg~~~~~ayG~Gg~R~a~~sh~~SlL~lpd 42 (127)
T COG3737 3 KGMLFREAHFPGRAPIDAYGAGGFRFADMSHRGSLLVLPD 42 (127)
T ss_pred CcceeecCCCCCcchhhhhcCCceEeccccccccEEEecC
Confidence 36666665 55 55567788888764 677777
No 57
>PF14754 IFR3_antag: Papain-like auto-proteinase
Probab=28.53 E-value=64 Score=24.64 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=28.1
Q ss_pred cCCceeeecCceeecCcceEEEeeeEEEecCCccccCCCceeeeeeeccCCCccch
Q psy2561 55 LADMFISDEPGYYEDGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLVPIQTS 110 (134)
Q Consensus 55 ~~GMV~tiEPgiy~~g~~gvried~v~Vt~~~~~~~~~~~~~~G~e~LT~~P~~~~ 110 (134)
-||--|++-|.+- ..+-.--..|+++||.|+.+. ||--|..+|-|..
T Consensus 128 fpgarfaltpvya-nawvaspaanslivttdqeqd--------gfcwlkllppdrr 174 (249)
T PF14754_consen 128 FPGARFALTPVYA-NAWVASPAANSLIVTTDQEQD--------GFCWLKLLPPDRR 174 (249)
T ss_pred CCCceeeechhhh-cceecCccccceEEEeccccC--------ceEEEEecCCchh
Confidence 4666777766432 122122345778888774443 7777888777665
No 58
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=27.49 E-value=2.8e+02 Score=21.10 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCC--CCCccee--ecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeE
Q psy2561 5 HAIDAIARHNLWSVGLD--YLHGTGH--GIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIV 80 (134)
Q Consensus 5 ~~id~~~r~~l~~~G~~--~~~~~GH--GIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v 80 (134)
.+|.+.+++.+.+.|.. +....+. .++ ..... ...++. .++.+|++|.++.++-+... +.+..-+..|+
T Consensus 37 ~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~n~--~~~H~~--~~~~~l~~Gd~v~iD~g~~~-~gY~aD~~RT~ 109 (247)
T TIGR00500 37 KELDRIAKDFIEKHGAKPAFLGYYGFPGSVC--ISVNE--VVIHGI--PDKKVLKDGDIVNIDVGVIY-DGYHGDTAKTF 109 (247)
T ss_pred HHHHHHHHHHHHHCCCCccccCCCCCCceeE--ecccc--EEEecC--CCCcccCCCCEEEEEEEEEE-CCEEEEEEEEE
Confidence 57777788888888853 1111111 111 11111 111221 24678999999999998765 44566778888
Q ss_pred EEec
Q psy2561 81 QVIP 84 (134)
Q Consensus 81 ~Vt~ 84 (134)
.|.+
T Consensus 110 ~vG~ 113 (247)
T TIGR00500 110 LVGK 113 (247)
T ss_pred EcCC
Confidence 8854
No 59
>KOG2776|consensus
Probab=25.72 E-value=1.1e+02 Score=26.16 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=31.1
Q ss_pred CCCCcccCCceeeecCceeecCcceEEEeeeEEEecC
Q psy2561 49 ATDSGILADMFISDEPGYYEDGKFGIRIENIVQVIPA 85 (134)
Q Consensus 49 ~~~~~L~~GMV~tiEPgiy~~g~~gvried~v~Vt~~ 85 (134)
+.+..|++|.|+-|--|+-++| +-.-+.+|++|++.
T Consensus 98 d~~~~Lk~GDvVKIdLG~HiDG-fiA~vaHT~VV~~~ 133 (398)
T KOG2776|consen 98 DADYTLKEGDVVKIDLGVHIDG-FIALVAHTIVVGPA 133 (398)
T ss_pred CCcccccCCCEEEEEeeeeecc-ceeeeeeeEEeccC
Confidence 3478899999999999999855 67789999999876
No 60
>TIGR02669 SpoIID_LytB SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown.
Probab=25.45 E-value=27 Score=28.03 Aligned_cols=13 Identities=38% Similarity=0.800 Sum_probs=10.1
Q ss_pred CCcceeecCCCCccc
Q psy2561 23 LHGTGHGIGSYLNVH 37 (134)
Q Consensus 23 ~~~~GHGIG~~l~vh 37 (134)
..+.||||| |+..
T Consensus 228 g~G~GHGvG--mSQ~ 240 (267)
T TIGR02669 228 GKGYGHGVG--MSQW 240 (267)
T ss_pred EeecccCcc--CCHH
Confidence 357899999 8764
No 61
>PRK12897 methionine aminopeptidase; Reviewed
Probab=25.30 E-value=3.2e+02 Score=21.01 Aligned_cols=75 Identities=11% Similarity=-0.083 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHcCCCCC--Cccee--ecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEee
Q psy2561 3 QGHAIDAIARHNLWSVGLDYL--HGTGH--GIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIEN 78 (134)
Q Consensus 3 ~~~~id~~~r~~l~~~G~~~~--~~~GH--GIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried 78 (134)
+-.+|++...+.++++|.... ...|. .|. .... -...+.. .++.+|++|.++.++-+.-. +.+..-+..
T Consensus 36 tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~--~g~n--~~~~H~~--p~~~~l~~Gd~V~iD~g~~~-~GY~sD~tR 108 (248)
T PRK12897 36 TTKEINTFVEAYLEKHGATSEQKGYNGYPYAIC--ASVN--DEMCHAF--PADVPLTEGDIVTIDMVVNL-NGGLSDSAW 108 (248)
T ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCcceE--eccC--CEeecCC--CCCcccCCCCEEEEEeeEEE-CCEEEEEEE
Confidence 446788888888888886421 01111 111 1111 0111221 24568999999999998765 334566777
Q ss_pred eEEEec
Q psy2561 79 IVQVIP 84 (134)
Q Consensus 79 ~v~Vt~ 84 (134)
|+.|.+
T Consensus 109 T~~vG~ 114 (248)
T PRK12897 109 TYRVGK 114 (248)
T ss_pred EEEcCC
Confidence 887753
No 62
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=25.01 E-value=22 Score=28.14 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=12.3
Q ss_pred CCcceeecCCCCccc
Q psy2561 23 LHGTGHGIGSYLNVH 37 (134)
Q Consensus 23 ~~~~GHGIG~~l~vh 37 (134)
....||+||+|+...
T Consensus 86 liLiGHSIGayi~le 100 (266)
T PF10230_consen 86 LILIGHSIGAYIALE 100 (266)
T ss_pred EEEEeCcHHHHHHHH
Confidence 456899999999774
No 63
>PF14980 TIP39: TIP39 peptide
Probab=24.85 E-value=49 Score=20.02 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=10.9
Q ss_pred cCCHHH-HHHHHhhhhh
Q psy2561 116 MLTADE-VSRIEYTLFI 131 (134)
Q Consensus 116 ll~~~e-~~wln~y~~~ 131 (134)
||+..| .+|||-|-.-
T Consensus 29 Ll~amER~~WLnSYMqk 45 (51)
T PF14980_consen 29 LLTAMERQKWLNSYMQK 45 (51)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 555555 5799999643
No 64
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=24.53 E-value=2.8e+02 Score=20.19 Aligned_cols=72 Identities=18% Similarity=0.079 Sum_probs=41.9
Q ss_pred chHHHHHHHHHH-HHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeE
Q psy2561 3 QGHAIDAIARHN-LWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIV 80 (134)
Q Consensus 3 ~~~~id~~~r~~-l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v 80 (134)
+-.+|.+++++. +.+.|.. ..+..-=+.| .+.. ..++. .++.+|++|+++.++-+.... .+-..+..|+
T Consensus 26 te~ei~~~~~~~~~~~~g~~~~~~~~~~~~g----~~~~--~~~~~--~~~~~l~~gd~v~id~~~~~~-gy~~d~~Rt~ 96 (207)
T PF00557_consen 26 TEYEIAAAIERAMLRRHGGEEPAFPPIVGSG----PNTD--LPHYT--PTDRRLQEGDIVIIDFGPRYD-GYHADIARTF 96 (207)
T ss_dssp BHHHHHHHHHHHHHHHTTTTEESSESEEEEC----CCCG--ETTTB--CCSSBESTTEEEEEEEEEEET-TEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHcCCCcccCCceEecC----Ccce--eccee--ccceeeecCCcceeeccceee-eeEeeeeeEE
Confidence 356777777776 6666742 1111111122 1111 11121 246789999999999988764 4566788888
Q ss_pred EEe
Q psy2561 81 QVI 83 (134)
Q Consensus 81 ~Vt 83 (134)
++.
T Consensus 97 ~~G 99 (207)
T PF00557_consen 97 VVG 99 (207)
T ss_dssp ESS
T ss_pred EEe
Confidence 774
No 65
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=24.45 E-value=4.9e+02 Score=22.87 Aligned_cols=34 Identities=15% Similarity=-0.043 Sum_probs=25.1
Q ss_pred CCCCcccCCceeeecCceeecCcceEEEeeeEEEe
Q psy2561 49 ATDSGILADMFISDEPGYYEDGKFGIRIENIVQVI 83 (134)
Q Consensus 49 ~~~~~L~~GMV~tiEPgiy~~g~~gvried~v~Vt 83 (134)
+++++|+.|.|+.|.-|...+| +-.-...|+.+.
T Consensus 229 gd~~vLk~GDvVkID~G~~vdG-YiaD~ArTv~vg 262 (470)
T PTZ00053 229 GDKTVLTYDDVCKLDFGTHVNG-RIIDCAFTVAFN 262 (470)
T ss_pred CCCcEecCCCeEEEEEeEEECC-EEEeEEEEEEeC
Confidence 3567899999999999998754 344555666663
No 66
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=24.12 E-value=95 Score=19.85 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=7.9
Q ss_pred cccCCceeeec
Q psy2561 53 GILADMFISDE 63 (134)
Q Consensus 53 ~L~~GMV~tiE 63 (134)
.|++|.|+.++
T Consensus 28 ~L~~Gdvi~L~ 38 (77)
T TIGR02480 28 KLGEGSVIELD 38 (77)
T ss_pred cCCCCCEEEcC
Confidence 47777777775
No 67
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=23.49 E-value=2.9e+02 Score=19.99 Aligned_cols=73 Identities=16% Similarity=0.065 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHcCCC-CCCcceeecCCCCcccCCCCcCCCCCCCCCCcccCCceeeecCceeecCcceEEEeeeEEE
Q psy2561 4 GHAIDAIARHNLWSVGLD-YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIVQV 82 (134)
Q Consensus 4 ~~~id~~~r~~l~~~G~~-~~~~~GHGIG~~l~vhE~P~~~~~~~~~~~~~L~~GMV~tiEPgiy~~g~~gvried~v~V 82 (134)
-.+|.+++++.+.+.|.. +...+--+.| .+ ...| ... .++.+|++|.++.++-+... +.+..-+..|+.+
T Consensus 28 e~ei~~~~~~~~~~~g~~~~~~~~~v~~g--~~-~~~~---h~~--~~~~~l~~gd~v~id~g~~~-~gy~~d~~RT~~~ 98 (208)
T cd01092 28 EREVAAELEYFMRKLGAEGPSFDTIVASG--PN-SALP---HGV--PSDRKIEEGDLVLIDFGAIY-DGYCSDITRTVAV 98 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcEEEEC--cc-cccc---CCC--CCCcCcCCCCEEEEEeeeeE-CCEeccceeEEEC
Confidence 457778888888887764 2222222223 21 0111 111 24577999999999998764 4455667788888
Q ss_pred ecC
Q psy2561 83 IPA 85 (134)
Q Consensus 83 t~~ 85 (134)
.+.
T Consensus 99 g~~ 101 (208)
T cd01092 99 GEP 101 (208)
T ss_pred CCC
Confidence 753
No 68
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=22.98 E-value=88 Score=19.67 Aligned_cols=10 Identities=50% Similarity=0.803 Sum_probs=6.5
Q ss_pred eeeecCceee
Q psy2561 59 FISDEPGYYE 68 (134)
Q Consensus 59 V~tiEPgiy~ 68 (134)
|--.|||+|+
T Consensus 7 veq~EpGVyi 16 (59)
T PF08381_consen 7 VEQDEPGVYI 16 (59)
T ss_pred EEeeCCeeEE
Confidence 3456777775
No 69
>PRK08916 flagellar motor switch protein; Reviewed
Probab=22.33 E-value=97 Score=21.96 Aligned_cols=12 Identities=0% Similarity=-0.075 Sum_probs=9.5
Q ss_pred cccCCceeeecC
Q psy2561 53 GILADMFISDEP 64 (134)
Q Consensus 53 ~L~~GMV~tiEP 64 (134)
.|++|.|+.++-
T Consensus 65 ~L~~GDVI~Ld~ 76 (116)
T PRK08916 65 KLGPGSVLELDR 76 (116)
T ss_pred cCCCCCEEEcCC
Confidence 588999998853
No 70
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=20.96 E-value=72 Score=22.10 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=13.4
Q ss_pred hccCCHHHHHHHHhhhh
Q psy2561 114 CNMLTADEVSRIEYTLF 130 (134)
Q Consensus 114 ~~ll~~~e~~wln~y~~ 130 (134)
-.|||+.+++|+..|..
T Consensus 15 g~LLT~kQ~~~l~lyy~ 31 (101)
T PF04297_consen 15 GELLTEKQREILELYYE 31 (101)
T ss_dssp GGGS-HHHHHHHHHHCT
T ss_pred HHHCCHHHHHHHHHHHc
Confidence 36899999999998853
No 71
>TIGR02870 spore_II_D stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell.
Probab=20.09 E-value=39 Score=28.20 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=9.7
Q ss_pred CcceeecCCCCccc
Q psy2561 24 HGTGHGIGSYLNVH 37 (134)
Q Consensus 24 ~~~GHGIG~~l~vh 37 (134)
.+.||||| |+..
T Consensus 299 ~G~GHGVG--MSQ~ 310 (338)
T TIGR02870 299 IGYGHGVG--MSQY 310 (338)
T ss_pred eeecCCcC--ccHH
Confidence 56899999 8764
Done!