RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2561
(134 letters)
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 143 bits (363), Expect = 4e-44
Identities = 50/88 (56%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 2 SQGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
+ G +DA+AR LW GLDY HGTGHG+GS+LNVHEGP S+S P + + A M +S
Sbjct: 136 TTGSQLDALARQPLWKAGLDYGHGTGHGVGSFLNVHEGPQSIS--PAPNNVPLKAGMILS 193
Query: 62 DEPGYYEDGKFGIRIENIVQVIPAETKY 89
+EPGYY++GK+GIRIEN+V V+ AET
Sbjct: 194 NEPGYYKEGKYGIRIENLVLVVEAETTE 221
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 84.4 bits (209), Expect = 3e-20
Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 4 GHAIDAIARHNLWS--VGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
G +DA AR L GL +LHGTGHG+G L+VHE P +S T + M S
Sbjct: 288 GGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYLSPGSDTT---LEPGMVFS 344
Query: 62 DEPGYYEDGKFGIRIENIV 80
EPG Y G G+RIE+ V
Sbjct: 345 IEPGIYIPGGGGVRIEDTV 363
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 67.9 bits (167), Expect = 5e-15
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 7 IDAIARHNLWSVGL-DYL-HGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEP 64
+D AR + G +Y H TGHG+G L VHE P Y+ +D + M + EP
Sbjct: 132 VDKAARDVIEEAGYGEYFIHRTGHGVG--LEVHEAP----YISPGSDDVLEEGMVFTIEP 185
Query: 65 GYYEDGKFGIRIENIVQV 82
G Y GK G+RIE+ V V
Sbjct: 186 GIYIPGKGGVRIEDDVLV 203
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 65.8 bits (161), Expect = 3e-14
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 4 GHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILAD-MFI 60
G +DA AR L G + HG GHGIG L+VH+ Y+ + + +L M
Sbjct: 129 GGDVDAAAREVLEEGGYGEYFPHGLGHGIG--LDVHDEG---PYISRGGNDRVLEPGMVF 183
Query: 61 SDEPGYYE-DGKFGIRIENIVQV 82
+ EPG Y G G+RIE+ V V
Sbjct: 184 TIEPGIYFIPGWGGVRIEDTVLV 206
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 55.7 bits (134), Expect = 4e-10
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 6 AIDAIARHNLWSVGL-DYL-HGTGHGIGSYLNVHEGPISVSYLPKATDSGILA-DMFISD 62
+D AR + G DY H TGH IG + VHE P + P D+ L M ++
Sbjct: 268 QVDDAARRVITEAGYGDYFGHNTGHAIG--IEVHEDP---RFSP--RDTTTLQPGMLLTV 320
Query: 63 EPGYYEDGKFGIRIENIVQVIP--AETKYSRKNKTFLT 98
EPG Y G+ G+RIE++V V P AE Y+ LT
Sbjct: 321 EPGIYLPGQGGVRIEDVVLVTPQGAEVLYAMPKTVLLT 358
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 47.8 bits (114), Expect = 1e-07
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 6 AIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILAD-MFISDEP 64
A + + H L G ++ H TGHGIG L +HE P+ KA D +L M + EP
Sbjct: 135 AREVLEEHGL---GPNFGHRTGHGIG--LEIHEPPVL-----KAGDDTVLEPGMVFAVEP 184
Query: 65 GYYEDGKFGIRIENIV 80
G Y G G+RIE+ V
Sbjct: 185 GLYLPGGGGVRIEDTV 200
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 37.5 bits (88), Expect = 8e-04
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILAD-MFISD 62
G AI+ A+ N +SV D TGHG+G ++HE P + + +L M ++
Sbjct: 153 GRAIEDFAKKNGYSVVRDL---TGHGVG--RSLHEEPSVILTYTDPLPNRLLRPGMTLAV 207
Query: 63 EP 64
EP
Sbjct: 208 EP 209
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 34.5 bits (80), Expect = 0.009
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 22 YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILAD-MFISDEPGYY-------EDGKF- 72
+ HG GH +G L+VH+ YL + L M I+ EPG Y F
Sbjct: 167 FPHGLGHYLG--LDVHDVG---GYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFR 221
Query: 73 --GIRIE-NIV 80
GIRIE +++
Sbjct: 222 GGGIRIEDDVL 232
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 34.0 bits (79), Expect = 0.012
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILAD-MFISD 62
GHAI+ A N +SV ++ GHGIG HE P +Y + L M +
Sbjct: 138 GHAIEKYAEKNGYSVVREF---GGHGIGRKF--HEEPQIPNY-GRPGTGPKLKPGMVFTI 191
Query: 63 EP 64
EP
Sbjct: 192 EP 193
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 32.0 bits (74), Expect = 0.059
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
GHAI A +SV +Y GHGIG HE P Y + M + E
Sbjct: 148 GHAIQKYAEAEGFSVVREY---CGHGIGRKF--HEEPQIPHYGAPGDGPVLKEGMVFTIE 202
Query: 64 P 64
P
Sbjct: 203 P 203
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 29.5 bits (67), Expect = 0.44
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
G AI A +SV + TGHGIG +HE P +Y T + M + E
Sbjct: 150 GRAIQEYAESRGFSVVRNL---TGHGIG--RELHEEPSIPNYGKDGTGVRLKEGMVFAIE 204
Query: 64 P 64
P
Sbjct: 205 P 205
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 28.5 bits (64), Expect = 1.3
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 22 YLHGTGHGIGSYLNVHEGP--ISVSYLPKATDSGILADMFISDEP 64
YL G S L+V P I V + P + I AD F+ D
Sbjct: 378 YLQCQYPGSMSALSVLPLPLKIRVPF-PYIFNPNISADGFVLDNS 421
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 27.8 bits (61), Expect = 2.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 27 GHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIVQV 82
GHG G +L + E P ++ ++ SG M +S E YY I IE+++ +
Sbjct: 253 GHGNGVFLGLEESPFVSTHATESFTSG----MVLSLETPYYGYNLGSIMIEDMILI 304
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 27.4 bits (60), Expect = 2.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 27 GHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYYEDGKFGIRIENIVQV 82
GHG G +L + E P ++ ++ SG M +S E YY I IE+++ +
Sbjct: 336 GHGNGVFLGLEESPFVSTHATESFTSG----MVLSLETPYYGYNLGSIMIEDMILI 387
>gnl|CDD|221487 pfam12250, AftA_N, Arabinofuranosyltransferase N terminal. This
domain family is found in bacteria, and is typically
between 430 and 441 amino acids in length. This family
is the N terminal region of AftA. The enzyme catalyzes
the addition of the first key arabinofuranosyl residue
from the sugar donor
beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to
the galactan domain of the cell wall, thus priming the
galactan for further elaboration by the
arabinofuranosyltransferases. The N terminal region has
been predicted to span 11 transmembrane regions.
Length = 431
Score = 27.1 bits (60), Expect = 3.4
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 45 YLPKATDSGILADMFISDEPGYYEDGKF--GIRIENIV 80
YL + TD+ L DM P +Y G F G R +
Sbjct: 107 YLTRLTDTAGLRDMTYIGLPPFYPAGWFWLGGRFAALT 144
>gnl|CDD|226805 COG4365, COG4365, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 537
Score = 27.1 bits (60), Expect = 3.5
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 2 SQGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVS--YLPKATDSGILADMF 59
+ H +D + S L L+G H + L+V +VS L K + LA +F
Sbjct: 131 GEDHDLDEVN-----STTLLELNGDLHKL--TLDVPPKVPTVSRVTLDKEWLAEWLATVF 183
Query: 60 ISDEPGYYEDG 70
+ + D
Sbjct: 184 RFEAETEHTDA 194
>gnl|CDD|173162 PRK14699, PRK14699, replication factor A; Provisional.
Length = 484
Score = 25.7 bits (56), Expect = 8.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 55 LADMFISDEPGYYEDGKFGIRIENI 79
+A M +++E G+ + G+ ++IENI
Sbjct: 39 MAAMLVANELGFSDAGRDSVKIENI 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.414
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,855,180
Number of extensions: 595648
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 24
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)