RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2561
(134 letters)
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 195 bits (497), Expect = 1e-60
Identities = 67/119 (56%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
GH +D+ AR LW GLDYLHGTGHG+GS+LNVHEGP +SY + D + A M ++DE
Sbjct: 465 GHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFS-DEPLEAGMIVTDE 523
Query: 64 PGYYEDGKFGIRIENIVQVIPAETKYSRKNKTFLTFKTITLVPIQTSLLCCNMLTADEV 122
PGYYEDG FGIRIEN+V V+P +TKY+ N+ LT + +TLVPIQT ++ + LT E
Sbjct: 524 PGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDSLTDKEC 582
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 75.4 bits (186), Expect = 2e-17
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 4 GHAIDAIARHNLWSVGL--DYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
+DA AR L GL ++H TGHGIG L VHE P Y+ + ++A M S
Sbjct: 284 AAQVDAAARDVLADAGLAEYFVHRTGHGIG--LCVHEEP----YIVAGNELPLVAGMAFS 337
Query: 62 DEPGYYEDGKFGIRIENIVQV 82
EPG Y G++G RIE+IV V
Sbjct: 338 IEPGIYFPGRWGARIEDIVVV 358
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 72.3 bits (178), Expect = 3e-16
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 4 GHAIDAIARHNLWSVGL-DY-LHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
+D+ AR + G +Y +H TGHG+G L+VHE P Y+ + + M +
Sbjct: 264 AKDVDSRAREVISKAGYGEYFIHRTGHGLG--LDVHEEP----YIGPDGEVILKNGMTFT 317
Query: 62 DEPGYYEDGKFGIRIENIVQV 82
EPG Y G G+RIE+ + V
Sbjct: 318 IEPGIYVPGLGGVRIEDDIVV 338
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 70.7 bits (174), Expect = 1e-15
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 4 GHAIDAIARHNLWSVGL-DY-LHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
+D+IAR+ + G +Y H GHG+G L VHE P + + ++ + M I+
Sbjct: 261 AKELDSIARNIIAEYGYGEYFNHSLGHGVG--LEVHEWP----RVSQYDETVLREGMVIT 314
Query: 62 DEPGYYEDGKFGIRIENIVQV 82
EPG Y G+RIE+ + +
Sbjct: 315 IEPGIYIPKIGGVRIEDTILI 335
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 70.7 bits (174), Expect = 1e-15
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 4 GHAIDAIARHNLWSVGL-DY-LHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
G +D++AR + G ++ H GHGIG L VHEGP + DS + ++ +
Sbjct: 267 GKLLDSVAREFIREKGYGEFFGHSLGHGIG--LEVHEGP----AISFRNDSPLPENVVFT 320
Query: 62 DEPGYYEDGKFGIRIENIVQV 82
EPG Y +GKFGIRIE V +
Sbjct: 321 VEPGIYLEGKFGIRIEEDVVL 341
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 70.7 bits (174), Expect = 1e-15
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 4 GHAIDAIARHNLWSVGLD--YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFIS 61
G DA+ R + G + H TGHGIG L +HE P L +D+ + M ++
Sbjct: 264 GREADALTRDYITEKGYGEYFGHSTGHGIG--LEIHEAP----GLAFRSDTVLEPGMAVT 317
Query: 62 DEPGYYEDGKFGIRIENIVQV 82
EPG Y G G+RIE+ + V
Sbjct: 318 VEPGIYIPGIGGVRIEDDIIV 338
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 63.9 bits (156), Expect = 3e-13
Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 9/86 (10%)
Query: 4 GHAIDAIARHNLWSVGL-DYL-HGTGHGIGSYLNVHEGPISVSYLPKATDSGIL-ADMFI 60
I + Y G GH G H + +L M +
Sbjct: 297 CSDIARELNEIFLKHDVLQYRTFGYGHSFG--TLSHYYGREAGLELREDIDTVLEPGMVV 354
Query: 61 SDEPGYYED----GKFGIRIENIVQV 82
S EP G G R +I+ V
Sbjct: 355 SMEPMIMLPEGLPGAGGYREHDILIV 380
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 60.8 bits (148), Expect = 5e-12
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 4 GHAIDAIARHNLWSVGL--DYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGIL-ADMFI 60
I + L G GH G + H + +L M +
Sbjct: 297 CKDIASELNBMYRZWDLLRYRTFGYGHSFG--VLBHYYGREAGVELREDIZTVLEPGMVV 354
Query: 61 SDEPGYYED----GKFGIRIENIVQV 82
S EP + G G R +I+ +
Sbjct: 355 SMEPMVMBPEGEPGAGGYREHDILVI 380
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 59.6 bits (144), Expect = 1e-11
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 4 GHAIDAIARHNLWSVGLDY----LHGTGHGIGSYLNVHEGPISVSYLPKATDSGILAD-M 58
I + + D + G GIG + E + V+ A + +L M
Sbjct: 332 IGDIYTKILGLIRAKRPDLEPNFVRNLGAGIG--IEFRESSLLVN----AKNPRVLQAGM 385
Query: 59 FISDEPGY----------YEDGKFGIRIENIVQV 82
++ G+ + ++ + + + +Q+
Sbjct: 386 TLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQI 419
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 58.1 bits (140), Expect = 5e-11
Identities = 9/89 (10%), Positives = 23/89 (25%), Gaps = 14/89 (15%)
Query: 4 GHAIDAIARHNLWSVGLDY----LHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMF 59
+ + + G IG L + ++ K I
Sbjct: 340 PKEVYESVIEYIEKTKPELVPNFTKNIGSLIG--LEFRDSNFILN--VKNDYRKIQRGDC 395
Query: 60 ISDEPGYYE------DGKFGIRIENIVQV 82
+ G+ + +++ + VQ+
Sbjct: 396 FNISFGFNNLKDSQSANNYALQLADTVQI 424
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 54.2 bits (130), Expect = 9e-10
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 24 HGTGHGIGSYLNVHEGPISVSYLP---KATDSGILADMFISDEPG-YYEDGKFGIRIENI 79
HG+G E P+ A D + M + E E G F I++E+
Sbjct: 390 GCLMHGVGL---CDEWPLVAYPDHAVAGAYDYPLEPGMTLCVEALISEEGGDFSIKLEDQ 446
Query: 80 VQV 82
V +
Sbjct: 447 VLI 449
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 41.8 bits (99), Expect = 2e-05
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 22 YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYY--EDGKFGIRIENI 79
Y HG H +G L+ H+ +Y + + G M I+ EPG Y E+ GIRIE+
Sbjct: 337 YYHGVSHFLG--LDTHDVG---TYKDRVLEEG----MVITIEPGLYIEEES-IGIRIEDD 386
Query: 80 VQV 82
+ V
Sbjct: 387 ILV 389
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 37.2 bits (87), Expect = 7e-04
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 22 YLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYY--EDGK-------F 72
++HG H +G L+VH+ V + + M ++ PG Y D +
Sbjct: 348 FMHGLSHWLG--LDVHD----VGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGI 401
Query: 73 GIRIENIVQV 82
GIRIE+ + +
Sbjct: 402 GIRIEDDIVI 411
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 36.3 bits (85), Expect = 0.001
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVS-YLPKATDSGILADMFISD 62
G A+ AR N V + TGHG+G L HE P V Y + + M ++
Sbjct: 147 GKAVHNTARQNDLKVIKNL---TGHGVGLSL--HEAPAHVLNYFDPKDKTLLTEGMVLAI 201
Query: 63 EP 64
EP
Sbjct: 202 EP 203
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 34.1 bits (79), Expect = 0.007
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
G AI +SV +Y GHGIG HE P + Y + T+ + M + E
Sbjct: 149 GAAIQKFVEAEGFSVVREY---CGHGIGR--GFHEEPQVLHYDSRETNVVLKPGMTFTIE 203
Query: 64 P 64
P
Sbjct: 204 P 204
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 33.7 bits (78), Expect = 0.009
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
G+AI + A + +SV DY TGHGIG H+ P ++Y T + MF + E
Sbjct: 151 GYAIQSYAEKHNYSVVRDY---TGHGIGR--VFHDKPSILNYGRNGTGLTLKEGMFFTVE 205
Query: 64 P 64
P
Sbjct: 206 P 206
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 33.7 bits (78), Expect = 0.010
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
G I++ A ++V D+ TGHGIG+ H G + + Y A ++ + M + E
Sbjct: 184 GRVIESYANRFGYNVVRDF---TGHGIGTTF--HNGLVVLHYDQPAVETIMQPGMTFTIE 238
Query: 64 P 64
P
Sbjct: 239 P 239
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 33.0 bits (76), Expect = 0.015
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
G+ I A+ N +SV Y GHGI H P Y + + + E
Sbjct: 218 GNIIQKHAQANGFSVVRSY---CGHGIHKLF--HTAPNVPHYAKNKAVGVMKSGHVFTIE 272
Query: 64 P 64
P
Sbjct: 273 P 273
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 33.1 bits (76), Expect = 0.018
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
G IDA +SV Y +GHG+G H P + + + E
Sbjct: 249 GTLIDAYVSKKNFSVVRSY---SGHGVGKLF--HSNPTVPHFKKNKAVGIMKPGHVFTIE 303
Query: 64 P 64
P
Sbjct: 304 P 304
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 31.6 bits (72), Expect = 0.057
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 22 YLHGTGHGIGSYLNVH--------EGPISVSYLPKATDSGIL-ADMFISDEPGYY 67
HG GH +G ++VH I L + L M ++ EPG Y
Sbjct: 365 MPHGLGHFLG--IDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIY 417
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 31.3 bits (71), Expect = 0.074
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 40/97 (41%)
Query: 22 YLHGTGHGIGSYLNVH-----------EGPISVSYLPKATDSGIL-ADMFISDEPGYY-- 67
+ HG GH IG L VH P + + A+ + EPG Y
Sbjct: 330 FPHGLGHHIG--LQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLYFI 387
Query: 68 ----------EDGKF-------------GIRIE-NIV 80
++ + GIRIE NI+
Sbjct: 388 DSLLGDLAATDNNQHINWDKVAELKPFGGIRIEDNII 424
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 30.9 bits (71), Expect = 0.084
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGP 40
H I ++V DY GHG+G L HE P
Sbjct: 160 SHCIQETVESVGFNVIRDY---VGHGVGREL--HEDP 191
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 30.6 bits (70), Expect = 0.12
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
GHAI + V D+ GHGIG + HE P+ Y + M I+ E
Sbjct: 147 GHAIQTYVEGEGYGVVRDF---VGHGIGPTI--HESPMIPHYGEAGKGLRLKEGMVITIE 201
Query: 64 P 64
P
Sbjct: 202 P 202
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 30.4 bits (69), Expect = 0.16
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 40/97 (41%)
Query: 22 YLHGTGHGIGSYLNVH-----------EGPISVSYLPKATDSGIL-ADMFISDEPGYY-- 67
+ HG GH +G L VH + P + ++ A + EPG Y
Sbjct: 333 FPHGIGHFLG--LQVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMVEARQVFTIEPGLYFI 390
Query: 68 ----------EDGKF-------------GIRIE-NIV 80
K+ GIRIE NI+
Sbjct: 391 DSLLRDLKATPASKYINWDTIDAYKPFGGIRIEDNII 427
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.22
Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 40/108 (37%)
Query: 32 SYLNVHEGPISVSYLPKATDSG------ILADMFISDEPGYYEDGKFGIRIENIVQVIPA 85
YL+ LP+ + I+A+ I D +N V
Sbjct: 309 KYLD-----CRPQDLPREVLTTNPRRLSIIAES-IRDGL---------ATWDNWKHV--- 350
Query: 86 ETKYSRKNKTFLTFKTITLVPIQTSLLCCNMLTADEVSRIEYTLFILP 133
+ I++SL N+L E ++ L + P
Sbjct: 351 --NCDKLTTI-----------IESSL---NVLEPAEYRKMFDRLSVFP 382
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.96
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 17/56 (30%)
Query: 56 ADMFISDEPGYYEDGKFGIRIENIVQVIPAET---------KYSRKNKTFLTFKTI 102
AD D +G I +IV P K R+N + + F+TI
Sbjct: 1649 ADNHFKD--------TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 27.5 bits (62), Expect = 1.2
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 13/44 (29%)
Query: 4 GHAIDAIARHNLWSVGLDYLHG-------TGHGIGSYLNVHEGP 40
HAI+ R + + GHGIG + H P
Sbjct: 178 SHAIELGTR----AAEKQFDRAFGIVDGYGGHGIGRSM--HLDP 215
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 26.8 bits (60), Expect = 2.2
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 4 GHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
G AI+ R + ++ +GH I Y +H G + + + + E
Sbjct: 132 GKAIENEIRKRGFKPIVNL---SGHKIERY-KLHAGISIPNIYRPHDNYVLKEGDVFAIE 187
Query: 64 P 64
P
Sbjct: 188 P 188
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 26.0 bits (58), Expect = 5.1
Identities = 5/59 (8%), Positives = 11/59 (18%), Gaps = 11/59 (18%)
Query: 2 SQGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFI 60
++ A+ HGT G + + +
Sbjct: 147 AEAARTPTAAQLAAGHSFNATCHGTN-----------GTVQSGARDNGQPWSPIMKALM 194
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 25.3 bits (56), Expect = 8.5
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 34 LNVHEGPISVSYLPKATDSGILADMF 59
V E I V K +G + ++F
Sbjct: 289 FAVEERKIDVDEWQKKAGAGEITEVF 314
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.414
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,061,771
Number of extensions: 110722
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 35
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)