RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2561
(134 letters)
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 49.2 bits (116), Expect = 1e-08
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 3 QGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISD 62
+D+IAR + G G G L +HE P Y G M I+
Sbjct: 133 TAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEG----MVITI 188
Query: 63 EPGYYEDGKFGIRIENIVQV 82
EPG Y G+RIE+ V +
Sbjct: 189 EPGIYIPKLGGVRIEDTVLI 208
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 39.7 bits (91), Expect = 3e-05
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 1 MSQGHAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFI 60
M G I + ++ + H G + V + + M +
Sbjct: 145 MVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVL 204
Query: 61 SDEPGYY---------EDGKFGIRIENIVQV 82
+ PG Y + GIRIE+ + +
Sbjct: 205 TVAPGLYIAPDAEVPEQYRGIGIRIEDDIVI 235
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 38.8 bits (89), Expect = 6e-05
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 20/97 (20%)
Query: 4 GHAIDAIARHNLWSVGLDYL-HGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISD 62
+ + + SVG + + GHG+G +HE P +Y T + M ++
Sbjct: 144 LGDVSHCIQETVESVGFNVIRDYVGHGVG--RELHEDPQIPNYGTPGTGVVLRKGMTLAI 201
Query: 63 EPGYYE-----------------DGKFGIRIENIVQV 82
EP E DG E+ + +
Sbjct: 202 EPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILI 238
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 36.2 bits (82), Expect = 5e-04
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 16 WSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEPGYY----EDGK 71
V G GH G L+ + G + L + D+ + M +S EP G
Sbjct: 156 HDVLQYRTFGYGHSFG-TLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPGA 214
Query: 72 FGIRIENIVQV 82
G R +I+ V
Sbjct: 215 GGYREHDILIV 225
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 33.9 bits (76), Expect = 0.003
Identities = 7/80 (8%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Query: 5 HAIDAIARHNLWSVGLDYLHGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDEP 64
+ + + G + +H G + + + + EP
Sbjct: 129 KELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEP 188
Query: 65 GYY--EDGKFGIRIENIVQV 82
+ E+ + V
Sbjct: 189 FATIGARNGIVAQFEHTIIV 208
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 32.2 bits (72), Expect = 0.012
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 20/96 (20%)
Query: 5 HAIDAIARHNLWSVGLDYL-HGTGHGIGSYLNVHEGPISVSYLPKATDSGILADMFISDE 63
I A + + + G + GHGIG HE P + Y + T+ + M + E
Sbjct: 145 REIGAAIQKFVEAEGFSVVREYCGHGIGRGF--HEEPQVLHYDSRETNVVLKPGMTFTIE 202
Query: 64 PGYY-----------------EDGKFGIRIENIVQV 82
P +D + E+ + V
Sbjct: 203 PMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVV 238
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 31.1 bits (69), Expect = 0.029
Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 11/95 (11%)
Query: 1 MSQGHAIDAIARHNLWSV-GLDYLHGTGHGI---GSYLNVHEGPISVSYLPKATDSGILA 56
G AI + + G Y + +V + + +
Sbjct: 189 CDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEE 248
Query: 57 DMFISDEPGYY-------EDGKFGIRIENIVQVIP 84
+ E G + + E+ + + P
Sbjct: 249 GEVYAIETFGSTGKGVVDIKGSYTAQFEHTILLRP 283
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 25.6 bits (55), Expect = 2.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 58 MFISDEPGYYEDGKFGIRIENIV 80
+F+S PG +E G +E I+
Sbjct: 384 VFVSATPGPFELAHSGRVVEQII 406
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter
calcoaceticus [TaxId: 471]}
Length = 309
Score = 25.3 bits (55), Expect = 3.1
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 58 MFISDEPGYYEDGKFGIRIENIVQVIPAE 86
+ ++ +P Y+D + R +V +
Sbjct: 239 INVAGDPYTYDDFAYATREGLVVDAVEHT 267
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus
opacus [TaxId: 37919]}
Length = 256
Score = 23.7 bits (51), Expect = 9.2
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 58 MFISDEPGYYEDGKFGIRIENIVQVIPAET 87
++ +P D ++ E ++ V +
Sbjct: 210 LYFEGDPYLDSDSCSAVKSELVLPVNKIDI 239
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.414
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 497,363
Number of extensions: 20671
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 13
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)