Query psy257
Match_columns 157
No_of_seqs 148 out of 1039
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:32:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00066 pyruvate kinase; Prov 100.0 5.9E-52 1.3E-56 373.4 9.0 156 1-156 300-468 (513)
2 PTZ00300 pyruvate kinase; Prov 100.0 1.6E-51 3.4E-56 366.6 8.9 151 1-151 237-400 (454)
3 PLN02762 pyruvate kinase compl 100.0 1.9E-51 4.1E-56 370.0 9.0 156 1-156 295-466 (509)
4 PLN02461 Probable pyruvate kin 100.0 3.9E-51 8.5E-56 368.1 8.4 151 1-151 284-460 (511)
5 PRK09206 pyruvate kinase; Prov 100.0 1E-50 2.2E-55 362.8 8.1 153 1-156 263-427 (470)
6 PRK06354 pyruvate kinase; Prov 100.0 2.8E-50 6.1E-55 367.9 8.0 153 1-156 269-434 (590)
7 PRK06247 pyruvate kinase; Prov 100.0 2.6E-50 5.6E-55 360.4 7.4 154 1-155 260-425 (476)
8 KOG2323|consensus 100.0 8.5E-50 1.8E-54 356.7 9.3 150 1-150 284-446 (501)
9 PLN02765 pyruvate kinase 100.0 3.6E-49 7.8E-54 356.0 9.1 154 1-155 298-477 (526)
10 cd00288 Pyruvate_Kinase Pyruva 100.0 4.2E-49 9E-54 353.2 8.0 152 1-152 264-428 (480)
11 PRK05826 pyruvate kinase; Prov 100.0 4.4E-49 9.4E-54 352.0 7.9 154 1-156 264-430 (465)
12 COG0469 PykF Pyruvate kinase [ 100.0 2.5E-48 5.4E-53 347.2 8.0 151 1-154 266-431 (477)
13 TIGR01064 pyruv_kin pyruvate k 100.0 1E-43 2.2E-48 317.9 8.2 151 1-151 262-425 (473)
14 PLN02623 pyruvate kinase 100.0 5.7E-43 1.2E-47 318.4 7.6 155 1-156 368-533 (581)
15 PRK06739 pyruvate kinase; Vali 100.0 3.7E-36 8E-41 261.1 8.2 78 1-78 256-333 (352)
16 PF00224 PK: Pyruvate kinase, 100.0 2.8E-36 6.1E-41 260.7 6.5 83 1-83 266-348 (348)
17 PRK08187 pyruvate kinase; Vali 99.9 3.2E-28 6.9E-33 219.2 7.4 72 1-78 410-481 (493)
18 PRK14725 pyruvate kinase; Prov 99.9 3.9E-28 8.4E-33 222.0 7.4 72 1-78 527-598 (608)
19 PF02887 PK_C: Pyruvate kinase 99.3 3.1E-13 6.7E-18 99.8 -2.2 48 106-153 19-70 (117)
20 PRK07998 gatY putative fructos 66.7 38 0.00082 29.1 7.9 72 1-76 34-127 (283)
21 PF03796 DnaB_C: DnaB-like hel 64.7 5.3 0.00011 32.6 2.3 44 3-49 164-211 (259)
22 PF03102 NeuB: NeuB family; I 64.2 8.2 0.00018 32.3 3.4 49 1-60 105-154 (241)
23 PRK07695 transcriptional regul 62.4 23 0.0005 27.9 5.6 51 8-71 148-198 (201)
24 CHL00162 thiG thiamin biosynth 62.1 20 0.00044 30.8 5.4 39 33-71 201-239 (267)
25 PF04312 DUF460: Protein of un 60.5 5.1 0.00011 31.2 1.4 31 1-39 68-98 (138)
26 PTZ00314 inosine-5'-monophosph 56.9 11 0.00024 34.6 3.2 35 4-50 339-373 (495)
27 TIGR01302 IMP_dehydrog inosine 56.6 11 0.00025 33.9 3.2 34 4-49 322-355 (450)
28 PF02662 FlpD: Methyl-viologen 55.7 38 0.00082 25.3 5.4 28 27-54 36-63 (124)
29 cd02811 IDI-2_FMN Isopentenyl- 55.2 35 0.00076 29.4 5.9 31 9-51 255-285 (326)
30 PRK11840 bifunctional sulfur c 54.5 33 0.00072 30.3 5.6 41 33-73 261-301 (326)
31 TIGR03586 PseI pseudaminic aci 52.7 41 0.00089 29.4 5.9 39 2-49 127-166 (327)
32 cd00381 IMPDH IMPDH: The catal 52.7 14 0.0003 32.0 2.9 33 5-49 193-225 (325)
33 PRK05567 inosine 5'-monophosph 52.1 12 0.00026 34.0 2.6 33 5-49 327-359 (486)
34 TIGR00665 DnaB replicative DNA 51.2 16 0.00034 32.2 3.1 46 3-49 339-386 (434)
35 PRK08649 inosine 5-monophospha 49.8 17 0.00036 32.3 3.0 29 9-49 256-284 (368)
36 PRK00208 thiG thiazole synthas 48.1 48 0.001 28.3 5.4 55 8-74 174-228 (250)
37 TIGR01303 IMP_DH_rel_1 IMP deh 47.9 22 0.00047 32.7 3.5 36 4-51 323-358 (475)
38 PRK06321 replicative DNA helic 46.5 21 0.00045 32.6 3.2 45 4-49 374-420 (472)
39 PF05690 ThiG: Thiazole biosyn 46.1 40 0.00087 28.7 4.6 60 5-76 171-230 (247)
40 cd04728 ThiG Thiazole synthase 45.9 55 0.0012 27.9 5.4 42 33-74 187-228 (248)
41 cd04441 DEP_2_DEP6 DEP (Dishev 45.9 31 0.00068 24.5 3.4 35 9-43 29-64 (85)
42 PRK05748 replicative DNA helic 45.8 25 0.00054 31.4 3.6 44 3-49 349-396 (448)
43 cd04440 DEP_2_P-Rex DEP (Dishe 43.2 27 0.00058 25.4 2.8 35 9-43 34-69 (93)
44 PRK15447 putative protease; Pr 43.1 30 0.00064 29.5 3.5 45 30-75 14-62 (301)
45 PF10930 DUF2737: Protein of u 42.5 12 0.00027 24.6 0.8 26 9-34 6-31 (54)
46 PRK08840 replicative DNA helic 42.3 22 0.00048 32.4 2.7 46 3-49 363-410 (464)
47 PRK06843 inosine 5-monophospha 41.9 29 0.00062 31.4 3.3 32 6-49 253-284 (404)
48 PRK00043 thiE thiamine-phospha 41.2 93 0.002 24.1 5.8 39 34-72 172-210 (212)
49 PRK07004 replicative DNA helic 41.1 35 0.00076 30.9 3.8 46 3-49 358-405 (460)
50 cd04449 DEP_DEPDC5-like DEP (D 40.6 33 0.00072 23.8 2.8 34 10-43 27-62 (83)
51 COG1908 FrhD Coenzyme F420-red 40.6 23 0.00051 27.3 2.2 22 30-51 40-61 (132)
52 cd04448 DEP_PIKfyve DEP (Dishe 40.4 29 0.00063 24.1 2.5 34 10-43 26-60 (81)
53 PRK07807 inosine 5-monophospha 39.6 28 0.00062 31.9 3.0 33 5-49 326-358 (479)
54 TIGR01306 GMP_reduct_2 guanosi 39.5 32 0.0007 30.1 3.2 32 7-50 196-227 (321)
55 PF03437 BtpA: BtpA family; I 39.0 58 0.0013 27.6 4.6 41 33-76 32-78 (254)
56 cd00408 DHDPS-like Dihydrodipi 38.9 1.4E+02 0.003 24.5 6.8 56 9-73 66-122 (281)
57 TIGR03569 NeuB_NnaB N-acetylne 38.8 43 0.00093 29.3 3.9 36 1-45 125-161 (329)
58 PRK05458 guanosine 5'-monophos 38.7 35 0.00076 29.9 3.3 32 8-51 200-231 (326)
59 PRK08318 dihydropyrimidine deh 38.3 33 0.00071 30.4 3.1 53 9-78 253-305 (420)
60 TIGR03128 RuMP_HxlA 3-hexulose 38.1 72 0.0016 24.9 4.8 38 2-50 95-133 (206)
61 PF00478 IMPDH: IMP dehydrogen 37.8 23 0.00049 31.5 2.0 35 4-50 206-240 (352)
62 cd00958 DhnA Class I fructose- 37.8 1.1E+02 0.0023 24.5 5.8 37 34-70 198-234 (235)
63 cd07939 DRE_TIM_NifV Streptomy 37.5 1.9E+02 0.0042 23.7 7.4 64 2-72 116-180 (259)
64 COG1856 Uncharacterized homolo 37.3 38 0.00082 29.0 3.1 47 14-63 28-76 (275)
65 cd00984 DnaB_C DnaB helicase C 37.1 42 0.00091 26.6 3.3 44 3-49 157-204 (242)
66 cd04740 DHOD_1B_like Dihydroor 36.9 1.2E+02 0.0025 25.3 6.1 32 8-51 230-261 (296)
67 PRK09284 thiamine biosynthesis 36.7 78 0.0017 30.2 5.3 21 30-50 232-253 (607)
68 TIGR01304 IMP_DH_rel_2 IMP deh 35.6 34 0.00075 30.4 2.8 28 10-49 256-283 (369)
69 cd04737 LOX_like_FMN L-Lactate 35.3 1E+02 0.0022 27.2 5.7 17 33-49 288-304 (351)
70 TIGR01037 pyrD_sub1_fam dihydr 35.2 79 0.0017 26.4 4.8 52 8-77 233-284 (300)
71 cd04442 DEP_1_DEP6 DEP (Dishev 35.0 56 0.0012 23.0 3.3 35 9-43 25-60 (82)
72 PLN02274 inosine-5'-monophosph 34.7 43 0.00093 31.0 3.3 33 5-49 347-379 (505)
73 PRK08760 replicative DNA helic 34.3 37 0.0008 31.0 2.9 46 3-49 373-420 (476)
74 TIGR01304 IMP_DH_rel_2 IMP deh 33.8 48 0.001 29.5 3.4 36 3-52 182-217 (369)
75 cd04739 DHOD_like Dihydroorota 33.6 57 0.0012 28.1 3.8 41 1-51 154-196 (325)
76 PRK10558 alpha-dehydro-beta-de 33.6 40 0.00087 28.2 2.8 38 1-50 61-98 (256)
77 PRK06015 keto-hydroxyglutarate 33.2 83 0.0018 25.7 4.5 34 2-49 90-123 (201)
78 PRK05096 guanosine 5'-monophos 32.8 30 0.00064 30.8 1.9 35 4-50 208-242 (346)
79 PRK08506 replicative DNA helic 32.5 49 0.0011 30.1 3.3 44 3-49 336-383 (472)
80 PRK09165 replicative DNA helic 32.4 48 0.001 30.4 3.3 46 3-49 377-424 (497)
81 cd07937 DRE_TIM_PC_TC_5S Pyruv 32.3 2.1E+02 0.0045 23.9 6.9 66 2-72 124-190 (275)
82 COG1157 FliI Flagellar biosynt 32.3 34 0.00074 31.4 2.3 41 33-77 325-366 (441)
83 PRK09250 fructose-bisphosphate 32.0 89 0.0019 27.9 4.8 66 9-76 125-191 (348)
84 TIGR01418 PEP_synth phosphoeno 31.7 80 0.0017 30.8 4.8 55 1-74 727-781 (782)
85 PLN02444 HMP-P synthase 31.6 1.1E+02 0.0024 29.4 5.4 20 31-50 238-258 (642)
86 PRK05636 replicative DNA helic 31.6 46 0.001 30.7 3.0 44 3-49 409-456 (505)
87 cd04732 HisA HisA. Phosphorib 31.4 1.2E+02 0.0027 23.9 5.2 50 5-72 69-118 (234)
88 cd04443 DEP_GPR155 DEP (Dishev 31.4 47 0.001 23.3 2.4 34 10-43 28-62 (83)
89 PF01081 Aldolase: KDPG and KH 30.8 50 0.0011 26.8 2.8 34 2-49 94-127 (196)
90 PRK15447 putative protease; Pr 30.7 84 0.0018 26.7 4.3 43 1-50 53-95 (301)
91 cd02809 alpha_hydroxyacid_oxid 30.6 1.3E+02 0.0029 25.3 5.5 18 33-50 239-256 (299)
92 PRK05437 isopentenyl pyrophosp 30.2 1.1E+02 0.0023 26.8 5.0 31 9-51 261-291 (352)
93 PRK07565 dihydroorotate dehydr 30.1 1.2E+02 0.0025 26.1 5.1 55 8-79 238-292 (334)
94 PRK08227 autoinducer 2 aldolas 29.9 2E+02 0.0043 24.5 6.4 58 8-72 191-248 (264)
95 TIGR01182 eda Entner-Doudoroff 29.8 60 0.0013 26.5 3.1 34 2-49 94-127 (204)
96 PRK06904 replicative DNA helic 29.7 56 0.0012 29.8 3.2 44 3-49 368-415 (472)
97 PRK05447 1-deoxy-D-xylulose 5- 29.4 64 0.0014 29.1 3.5 95 4-105 110-249 (385)
98 PLN02334 ribulose-phosphate 3- 29.4 1.9E+02 0.0042 23.2 6.0 39 35-73 187-225 (229)
99 PF02885 Glycos_trans_3N: Glyc 29.3 61 0.0013 21.2 2.6 47 16-74 3-49 (66)
100 PRK13352 thiamine biosynthesis 29.3 1.3E+02 0.0027 27.7 5.3 20 31-50 78-98 (431)
101 PRK10415 tRNA-dihydrouridine s 28.9 3.7E+02 0.0081 23.0 8.6 37 7-56 192-229 (321)
102 PRK02083 imidazole glycerol ph 28.8 1.1E+02 0.0025 24.9 4.7 46 5-62 193-239 (253)
103 TIGR00259 thylakoid_BtpA membr 28.2 1.1E+02 0.0024 25.9 4.6 35 38-75 36-76 (257)
104 TIGR03239 GarL 2-dehydro-3-deo 28.1 57 0.0012 27.2 2.8 37 2-50 55-91 (249)
105 TIGR01949 AroFGH_arch predicte 28.1 1.8E+02 0.004 23.8 5.8 39 34-72 211-249 (258)
106 TIGR03151 enACPred_II putative 27.8 69 0.0015 27.4 3.3 32 6-49 158-189 (307)
107 COG0167 PyrD Dihydroorotate de 27.7 73 0.0016 27.8 3.5 39 9-57 161-200 (310)
108 PRK06464 phosphoenolpyruvate s 27.7 1.2E+02 0.0027 29.6 5.4 58 1-77 734-791 (795)
109 COG1152 CdhA CO dehydrogenase/ 27.6 1.9E+02 0.0041 28.1 6.3 68 1-77 316-383 (772)
110 PF00682 HMGL-like: HMGL-like 27.3 3.1E+02 0.0067 21.8 6.9 62 2-70 114-176 (237)
111 TIGR01305 GMP_reduct_1 guanosi 27.2 43 0.00093 29.8 2.0 18 33-50 224-241 (343)
112 COG0826 Collagenase and relate 27.2 89 0.0019 27.5 3.9 47 1-51 54-100 (347)
113 TIGR01361 DAHP_synth_Bsub phos 27.1 60 0.0013 27.2 2.8 41 2-50 125-166 (260)
114 PRK06512 thiamine-phosphate py 27.1 2E+02 0.0044 23.4 5.8 38 34-71 176-213 (221)
115 PF13344 Hydrolase_6: Haloacid 27.1 71 0.0015 22.6 2.8 35 2-45 23-57 (101)
116 TIGR01834 PHA_synth_III_E poly 26.8 52 0.0011 29.0 2.4 16 25-40 283-298 (320)
117 PF01300 Sua5_yciO_yrdC: Telom 26.5 1E+02 0.0022 24.0 3.8 46 3-53 112-157 (179)
118 PRK08649 inosine 5-monophospha 26.4 78 0.0017 28.1 3.5 36 2-50 180-215 (368)
119 PRK08227 autoinducer 2 aldolas 26.2 1.2E+02 0.0025 25.9 4.4 66 8-76 73-139 (264)
120 PRK12608 transcription termina 26.1 93 0.002 28.0 3.9 54 4-74 214-267 (380)
121 cd00954 NAL N-Acetylneuraminic 25.9 3E+02 0.0065 22.9 6.8 42 32-73 84-126 (288)
122 cd04730 NPD_like 2-Nitropropan 25.8 95 0.0021 24.6 3.6 18 33-50 168-185 (236)
123 cd04732 HisA HisA. Phosphorib 25.7 97 0.0021 24.6 3.7 43 5-59 186-228 (234)
124 cd02164 PPAT_CoAS phosphopante 25.5 22 0.00048 27.2 -0.1 18 42-59 88-105 (143)
125 COG0710 AroD 3-dehydroquinate 25.5 1.4E+02 0.0031 24.9 4.7 52 8-70 175-228 (231)
126 PHA02542 41 41 helicase; Provi 25.4 54 0.0012 30.0 2.4 46 3-49 338-383 (473)
127 cd04439 DEP_1_P-Rex DEP (Dishe 25.4 95 0.002 21.6 3.1 34 10-43 26-60 (81)
128 PRK05595 replicative DNA helic 25.3 61 0.0013 28.9 2.6 46 3-49 345-392 (444)
129 PLN02495 oxidoreductase, actin 25.1 91 0.002 27.9 3.7 41 1-51 173-215 (385)
130 cd04726 KGPDC_HPS 3-Keto-L-gul 25.1 2E+02 0.0044 22.1 5.3 37 2-49 96-132 (202)
131 cd04731 HisF The cyclase subun 24.9 1.5E+02 0.0032 23.9 4.6 44 7-62 191-235 (243)
132 cd00452 KDPG_aldolase KDPG and 24.7 2E+02 0.0042 22.5 5.2 18 33-50 107-124 (190)
133 PF00610 DEP: Domain found in 24.6 1.2E+02 0.0025 19.8 3.4 33 10-42 15-50 (74)
134 TIGR02311 HpaI 2,4-dihydroxyhe 24.3 78 0.0017 26.3 2.9 16 34-49 75-90 (249)
135 PRK06749 replicative DNA helic 24.2 61 0.0013 29.2 2.4 46 3-49 334-381 (428)
136 cd03811 GT1_WabH_like This fam 23.8 1.4E+02 0.003 23.2 4.1 31 4-50 282-312 (353)
137 cd04741 DHOD_1A_like Dihydroor 23.8 1.5E+02 0.0033 25.0 4.6 48 10-74 244-291 (294)
138 PF13653 GDPD_2: Glycerophosph 23.7 76 0.0017 18.3 2.0 16 34-49 11-26 (30)
139 PRK13813 orotidine 5'-phosphat 23.7 1.1E+02 0.0024 24.1 3.6 36 36-72 178-214 (215)
140 PRK07428 nicotinate-nucleotide 23.3 2.7E+02 0.0058 23.9 6.1 30 35-70 208-237 (288)
141 smart00049 DEP Domain found in 23.3 1.2E+02 0.0026 19.9 3.2 33 10-42 18-51 (77)
142 PRK03170 dihydrodipicolinate s 23.1 2.9E+02 0.0063 22.9 6.2 43 32-74 84-127 (292)
143 cd04444 DEP_PLEK2 DEP (Disheve 22.9 88 0.0019 23.4 2.7 35 9-43 28-63 (109)
144 PF02896 PEP-utilizers_C: PEP- 22.8 48 0.0011 28.5 1.4 40 1-51 240-279 (293)
145 PF01070 FMN_dh: FMN-dependent 22.5 1E+02 0.0022 27.2 3.4 36 3-51 219-254 (356)
146 cd07940 DRE_TIM_IPMS 2-isoprop 22.4 4E+02 0.0086 21.9 6.8 64 2-72 120-184 (268)
147 cd07941 DRE_TIM_LeuA3 Desulfob 22.4 4.1E+02 0.0088 22.1 6.9 66 2-71 125-191 (273)
148 PRK11197 lldD L-lactate dehydr 21.9 1.9E+02 0.0042 25.9 5.1 30 9-50 300-329 (381)
149 cd04946 GT1_AmsK_like This fam 21.9 2.7E+02 0.0059 24.1 6.0 47 5-71 330-376 (407)
150 PRK11858 aksA trans-homoaconit 21.8 4.7E+02 0.01 23.0 7.5 65 2-73 122-187 (378)
151 cd04736 MDH_FMN Mandelate dehy 21.8 97 0.0021 27.6 3.2 17 33-49 301-317 (361)
152 PRK06806 fructose-bisphosphate 21.6 3E+02 0.0065 23.4 6.0 52 1-52 34-106 (281)
153 cd04727 pdxS PdxS is a subunit 21.6 2.7E+02 0.0059 24.2 5.7 39 34-72 209-247 (283)
154 PF00534 Glycos_transf_1: Glyc 21.6 3.2E+02 0.007 19.7 7.0 49 4-73 111-159 (172)
155 PRK15116 sulfur acceptor prote 21.3 23 0.0005 30.1 -0.8 36 1-40 138-173 (268)
156 COG2022 ThiG Uncharacterized e 21.3 1.3E+02 0.0029 25.7 3.7 56 5-72 178-233 (262)
157 COG2870 RfaE ADP-heptose synth 21.2 53 0.0011 30.3 1.4 15 1-15 163-177 (467)
158 PRK01130 N-acetylmannosamine-6 21.1 2.4E+02 0.0052 22.3 5.1 30 9-50 173-202 (221)
159 PRK15452 putative protease; Pr 21.0 1.9E+02 0.0041 26.3 4.9 42 2-51 52-97 (443)
160 PRK04180 pyridoxal biosynthesi 21.0 2.3E+02 0.0049 24.8 5.2 61 3-75 197-259 (293)
161 TIGR03600 phage_DnaB phage rep 21.0 90 0.002 27.4 2.8 44 3-49 338-385 (421)
162 PRK12595 bifunctional 3-deoxy- 20.9 1E+02 0.0022 27.2 3.1 41 2-50 218-259 (360)
163 COG0434 SgcQ Predicted TIM-bar 20.8 1.8E+02 0.0039 25.0 4.4 40 34-76 38-83 (263)
164 PRK05849 hypothetical protein; 20.8 48 0.001 32.5 1.1 40 1-40 440-487 (783)
165 PRK07107 inosine 5-monophospha 20.7 62 0.0014 29.9 1.8 17 33-49 364-380 (502)
166 PRK03359 putative electron tra 20.7 2.5E+02 0.0055 23.6 5.3 46 27-72 63-110 (256)
167 PRK10128 2-keto-3-deoxy-L-rham 20.6 1.1E+02 0.0023 26.0 3.1 39 1-53 202-240 (267)
168 cd01572 QPRTase Quinolinate ph 20.6 3E+02 0.0064 23.2 5.8 28 34-67 193-220 (268)
169 PRK14024 phosphoribosyl isomer 20.5 1.9E+02 0.0041 23.6 4.5 47 4-62 185-234 (241)
170 PRK13398 3-deoxy-7-phosphohept 20.2 2E+02 0.0044 24.3 4.6 56 2-65 127-185 (266)
171 PRK07259 dihydroorotate dehydr 20.2 2.7E+02 0.0059 23.2 5.5 51 8-76 233-283 (301)
172 cd02922 FCB2_FMN Flavocytochro 20.1 1.3E+02 0.0029 26.4 3.6 35 4-51 208-242 (344)
173 PRK13399 fructose-1,6-bisphosp 20.1 3E+02 0.0065 24.5 5.8 51 1-51 34-106 (347)
No 1
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=5.9e-52 Score=373.39 Aligned_cols=156 Identities=45% Similarity=0.539 Sum_probs=134.7
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++|++++|+.+++.
T Consensus 300 II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~ 379 (513)
T PTZ00066 300 MISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYR 379 (513)
T ss_pred HHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhccchH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred HHHHHHhhhccCCCC-CCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQ-YETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~-~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
.+|.........+.+ ++.++.+++. +++++|.+|++|+++|||||.+ +|++++++|+|+|+|||+|+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP~~pIia~t~~~~~~R~L~L~wGV~p~ 459 (513)
T PTZ00066 380 VLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVTTY 459 (513)
T ss_pred HhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEE
Confidence 555443221111212 3567766665 4689999999999999999999 59999999999999999999
Q ss_pred eecCCCCCC
Q psy257 148 QKKSTDPTD 156 (157)
Q Consensus 148 ~~~~sd~~~ 156 (157)
+.+..+++|
T Consensus 460 ~~~~~~~~~ 468 (513)
T PTZ00066 460 VVNSFQGTD 468 (513)
T ss_pred EecCCCCHH
Confidence 988766543
No 2
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=1.6e-51 Score=366.64 Aligned_cols=151 Identities=41% Similarity=0.555 Sum_probs=130.8
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++||+++|+..++.
T Consensus 237 Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 316 (454)
T PTZ00300 237 LISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEY 316 (454)
T ss_pred HHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999875443
Q ss_pred HHHHHHhhhccCCCC-CCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQ-YETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~-~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..|..+......+.+ .+.++.+++. +++++|.+|++|++||||||.+ +|++.+++|+|+|+|||+|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~~~~ar~l~l~~GV~p~ 396 (454)
T PTZ00300 317 VFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESV 396 (454)
T ss_pred hhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEE
Confidence 444443222222222 3567766666 3678999999999999999999 59999999999999999999
Q ss_pred eecC
Q psy257 148 QKKS 151 (157)
Q Consensus 148 ~~~~ 151 (157)
+++.
T Consensus 397 ~~~~ 400 (454)
T PTZ00300 397 FFDA 400 (454)
T ss_pred Eecc
Confidence 8875
No 3
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=1.9e-51 Score=369.99 Aligned_cols=156 Identities=31% Similarity=0.331 Sum_probs=129.8
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++||+++|+...+.
T Consensus 295 II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~ 374 (509)
T PLN02762 295 IVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREE 374 (509)
T ss_pred HHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999864321
Q ss_pred HHHHHHh--hhccC--CCCCCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccce
Q psy257 81 KLLTELK--SMVSI--TKQYETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGF 144 (157)
Q Consensus 81 ~~~~~l~--~~~~~--~~~~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv 144 (157)
..+..+. ..... ...++.++.+++. +++++|.+|++|++||||||.+ +|++++++|+|+|+|||
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~tA~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV 454 (509)
T PLN02762 375 KRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGL 454 (509)
T ss_pred chhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCc
Confidence 1111111 11100 0112456655554 4688999999999999999999 59999999999999999
Q ss_pred eeeeecCCCCCC
Q psy257 145 IMLQKKSTDPTD 156 (157)
Q Consensus 145 ~pl~~~~sd~~~ 156 (157)
+|++.+...++|
T Consensus 455 ~p~~~~~~~~~~ 466 (509)
T PLN02762 455 IPFRLDFSDDME 466 (509)
T ss_pred EEEEeCCCCCHH
Confidence 999988766654
No 4
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=3.9e-51 Score=368.06 Aligned_cols=151 Identities=44% Similarity=0.615 Sum_probs=130.5
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++||+++|+.+++.
T Consensus 284 II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 363 (511)
T PLN02461 284 MIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYG 363 (511)
T ss_pred HHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred HHHHHHhhhccCCCCC-Cchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCC-------------Chh
Q psy257 81 KLLTELKSMVSITKQY-ETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAK-------------TSP 134 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~-e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~-------------~~t 134 (157)
.+|.........+.++ ++++.+++. +++++|.+|++|++||||||.+ +|.+ +++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ 443 (511)
T PLN02461 364 ALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAP 443 (511)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHH
Confidence 5565442211112232 567766666 3689999999999999999999 4644 899
Q ss_pred hhhhccccceeeeeecC
Q psy257 135 AWLGGGYKGFIMLQKKS 151 (157)
Q Consensus 135 ~r~l~l~~Gv~pl~~~~ 151 (157)
+|+|+|+|||+|++.+.
T Consensus 444 ar~l~L~~GV~P~~~~~ 460 (511)
T PLN02461 444 ARHSLIYRGLIPVLAEG 460 (511)
T ss_pred hhhhheecceEEEEecc
Confidence 99999999999999875
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=1e-50 Score=362.76 Aligned_cols=153 Identities=38% Similarity=0.454 Sum_probs=130.2
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++|++++|....+.
T Consensus 263 ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~ 342 (470)
T PRK09206 263 MIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSR 342 (470)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcchh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999865433
Q ss_pred HHHHHHhhhccCCCCCCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeeee
Q psy257 81 KLLTELKSMVSITKQYETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIMLQ 148 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl~ 148 (157)
|...... .....+++++.+++. +++++|.+|++|+++|||||.+ +|++++++|+|+|+|||+|++
T Consensus 343 --~~~~~~~-~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIia~t~~~~~~r~l~l~~GV~p~~ 419 (470)
T PRK09206 343 --LESNNDN-RKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATILALTTNEKTARQLVLSKGVVPQL 419 (470)
T ss_pred --hhhhccc-cCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEE
Confidence 2111110 001123556666665 4688999999999999999999 599999999999999999999
Q ss_pred ecCCCCCC
Q psy257 149 KKSTDPTD 156 (157)
Q Consensus 149 ~~~sd~~~ 156 (157)
++...++|
T Consensus 420 ~~~~~~~~ 427 (470)
T PRK09206 420 VKEIASTD 427 (470)
T ss_pred eCCCCCHH
Confidence 88766543
No 6
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=2.8e-50 Score=367.92 Aligned_cols=153 Identities=41% Similarity=0.456 Sum_probs=131.6
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++||+++|+.+++.
T Consensus 269 ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 348 (590)
T PRK06354 269 LIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYR 348 (590)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccchh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred HHHHHHhhhccCCCC-CCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQ-YETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~-~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
.+|...... ..+ .+.++.++.. +++++|.+|++|++||||||.+ +|++++++|||+|+|||+|+
T Consensus 349 ~~~~~~~~~---~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI~a~t~~~~~~r~l~l~~GV~p~ 425 (590)
T PRK06354 349 DILSKRPEF---TTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPL 425 (590)
T ss_pred hhhhhcccc---CCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEE
Confidence 444333221 111 2455555443 4688999999999999999999 59999999999999999999
Q ss_pred eecCCCCCC
Q psy257 148 QKKSTDPTD 156 (157)
Q Consensus 148 ~~~~sd~~~ 156 (157)
+++..+++|
T Consensus 426 ~~~~~~~~~ 434 (590)
T PRK06354 426 LVLDAPSTD 434 (590)
T ss_pred EeCCCCCHH
Confidence 988766543
No 7
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=2.6e-50 Score=360.40 Aligned_cols=154 Identities=36% Similarity=0.394 Sum_probs=131.0
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++||+++|+.+++.
T Consensus 260 ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 339 (476)
T PRK06247 260 IIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERDPTYP 339 (476)
T ss_pred HHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCHHHHHHHHHHHHHHHhhccchh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999876554
Q ss_pred HHHHHHhhhccCCCCCCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeeee
Q psy257 81 KLLTELKSMVSITKQYETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIMLQ 148 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl~ 148 (157)
..|...... .....++.++.++.. +++++|.+|++|+++|||||.+ +|++++++|+|+|+|||+|++
T Consensus 340 ~~~~~~~~~-~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~ 418 (476)
T PRK06247 340 PLIHAQRPQ-PEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERPPLPILALTPNPETARRLALTWGVHCVV 418 (476)
T ss_pred hhhhhcccc-cCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCCeeEe
Confidence 333322211 101112456655555 3688999999999999999999 599999999999999999999
Q ss_pred ecCCCCC
Q psy257 149 KKSTDPT 155 (157)
Q Consensus 149 ~~~sd~~ 155 (157)
.+...++
T Consensus 419 ~~~~~~~ 425 (476)
T PRK06247 419 VDDARDT 425 (476)
T ss_pred cCCCCCH
Confidence 8776654
No 8
>KOG2323|consensus
Probab=100.00 E-value=8.5e-50 Score=356.70 Aligned_cols=150 Identities=53% Similarity=0.713 Sum_probs=140.0
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||.+||.+|||||+||||||||+.+|+|||||+|||+|||+||+||+||||||+.|+||+++|++|+.||.++|..+||.
T Consensus 284 ~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~ 363 (501)
T KOG2323|consen 284 MIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYD 363 (501)
T ss_pred HHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCC-Cchhhhhhhh--------hhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQY-ETIPTCLSYM--------SGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~-e~i~~~~a~a--------~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
.+|+.+...++++.++ |.+..+++.+ ++++|.+|++|+|||||||++ .|..+.++||++||||++|+
T Consensus 364 ~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T~sg~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pv 443 (501)
T KOG2323|consen 364 SLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPV 443 (501)
T ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcceEEEEEecCcccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceee
Confidence 9999999999999887 5554444443 468999999999999999999 49999999999999999999
Q ss_pred eec
Q psy257 148 QKK 150 (157)
Q Consensus 148 ~~~ 150 (157)
++.
T Consensus 444 l~~ 446 (501)
T KOG2323|consen 444 LYA 446 (501)
T ss_pred eec
Confidence 954
No 9
>PLN02765 pyruvate kinase
Probab=100.00 E-value=3.6e-49 Score=356.03 Aligned_cols=154 Identities=30% Similarity=0.409 Sum_probs=130.6
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++|||||+ |||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++||+++|+.+++.
T Consensus 298 iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~ 376 (526)
T PLN02765 298 ALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQD 376 (526)
T ss_pred HHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHHhhcchh
Confidence 68999999999996 99999999999999999999999999999999999999999999999999999999999876555
Q ss_pred HHHHHHhhhccCCCC-CCchhhhhhh--------hhhhhccccccceeeeeecCCC----CC-CC------------Chh
Q psy257 81 KLLTELKSMVSITKQ-YETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RT-AK------------TSP 134 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~-~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T-~~------------~~t 134 (157)
..|.........+.+ .++++.+++. +++++|.+|++|+++|||||.+ +| ++ +++
T Consensus 377 ~~~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~ 456 (526)
T PLN02765 377 LYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQ 456 (526)
T ss_pred hhhhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHH
Confidence 444432221111222 2667777666 4689999999999999999999 47 55 799
Q ss_pred hhhhccccceeeeeecCCCCC
Q psy257 135 AWLGGGYKGFIMLQKKSTDPT 155 (157)
Q Consensus 135 ~r~l~l~~Gv~pl~~~~sd~~ 155 (157)
+|||+|+|||+|++.+..+++
T Consensus 457 aR~L~L~~GV~P~~~~~~~~~ 477 (526)
T PLN02765 457 ARQCLIVRGLFPMLADPRHSA 477 (526)
T ss_pred HHHhhcccCCEEEEecccccc
Confidence 999999999999998775553
No 10
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=4.2e-49 Score=353.22 Aligned_cols=152 Identities=47% Similarity=0.627 Sum_probs=130.1
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++||+++|+..++.
T Consensus 264 ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (480)
T cd00288 264 LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHR 343 (480)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999876554
Q ss_pred HHHHHHhhhccCC-CCCCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSIT-KQYETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~-~~~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..|.......+.. ...++++.+++. +++++|.+|++|++||+|||.+ +|++++++|+|+|+|||+|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP~~pIiavT~~~~~~r~l~l~~GV~p~ 423 (480)
T cd00288 344 VLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNAPIIAVTRNEQTARQLHLYRGVYPV 423 (480)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHhhheeeccCcEEE
Confidence 4443332211111 123556655555 4678999999999999999999 59999999999999999999
Q ss_pred eecCC
Q psy257 148 QKKST 152 (157)
Q Consensus 148 ~~~~s 152 (157)
+++..
T Consensus 424 ~~~~~ 428 (480)
T cd00288 424 LFEEP 428 (480)
T ss_pred Eeccc
Confidence 98765
No 11
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=4.4e-49 Score=351.98 Aligned_cols=154 Identities=44% Similarity=0.538 Sum_probs=130.0
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+++|++|++|++++|+..++.
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999876553
Q ss_pred HHHHHHhhhccCCCCCCchhhhhhh---------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQYETIPTCLSY---------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~e~i~~~~a~---------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..+..+... .....+.++.+++. +++++|.+|++|++||||||.+ +|++++++|+|+|+|||+|+
T Consensus 344 ~~~~~~~~~--~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~pI~~~t~~~~~~r~l~l~~GV~p~ 421 (465)
T PRK05826 344 LSKHRLDRQ--FDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPIFAVTRDEKTQRRLALYRGVYPV 421 (465)
T ss_pred hhhhhcccc--ccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHhhcccCcEEE
Confidence 222211110 01122455544433 5788999999999999999999 59999999999999999999
Q ss_pred eecCCCCCC
Q psy257 148 QKKSTDPTD 156 (157)
Q Consensus 148 ~~~~sd~~~ 156 (157)
+++..++.|
T Consensus 422 ~~~~~~~~~ 430 (465)
T PRK05826 422 LFDSAADTD 430 (465)
T ss_pred EeCCCCCHH
Confidence 998766543
No 12
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-48 Score=347.18 Aligned_cols=151 Identities=44% Similarity=0.485 Sum_probs=128.9
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++||.++|+.+.+.
T Consensus 266 iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G~yPveaV~~M~~I~~~aE~~~~~~ 345 (477)
T COG0469 266 IIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVATMARIAKEAEKELPDN 345 (477)
T ss_pred HHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcCCCHHHHHHHHHHHHHHHhcccchh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998633
Q ss_pred HHHHHHhhhccCCCC--CCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceee
Q psy257 81 KLLTELKSMVSITKQ--YETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIM 146 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~--~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~p 146 (157)
+++... ...+.. .+.|..++.. +++++|.+|++|+++|||||.. +|++++++|+|.|+|||+|
T Consensus 346 ~~~~~~---~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~pIia~t~~~~v~r~l~l~~GV~p 422 (477)
T COG0469 346 QLLRFR---VDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAPIIALTPNERVARRLALVWGVYP 422 (477)
T ss_pred hhhhhc---cccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCCCCCcEEEECCCHHHHhhhceeeccee
Confidence 322222 111122 2445444444 3578999999999999999999 5999999999999999999
Q ss_pred eeecC-CCC
Q psy257 147 LQKKS-TDP 154 (157)
Q Consensus 147 l~~~~-sd~ 154 (157)
++++. .++
T Consensus 423 ~~~~~~~~~ 431 (477)
T COG0469 423 LLVEEKPTS 431 (477)
T ss_pred EEecCCCCc
Confidence 99973 444
No 13
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=1e-43 Score=317.91 Aligned_cols=151 Identities=46% Similarity=0.537 Sum_probs=129.9
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
|+..|+++|||+|+||||||||+.||+|||||++||+|+++||+|++|||+||+.|+||+|+|++|++|++++|+..++.
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred HHHHHHhh-hccCCCCCCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKS-MVSITKQYETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~-~~~~~~~~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..|..... .......+++++.+++. +++++|.+|++|++||||||.+ +|++++++|+|+|+|||+|+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~~PIiAvT~~~~v~R~L~L~wGV~Pi 421 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPIIAVTPNERVARQLALYWGVFPF 421 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCCCCEEEEcCCHHHHHHhhccCCcEEE
Confidence 44433321 11111123567766666 4689999999999999999999 59999999999999999999
Q ss_pred eecC
Q psy257 148 QKKS 151 (157)
Q Consensus 148 ~~~~ 151 (157)
+++.
T Consensus 422 l~~~ 425 (473)
T TIGR01064 422 LVDE 425 (473)
T ss_pred EeCC
Confidence 9876
No 14
>PLN02623 pyruvate kinase
Probab=100.00 E-value=5.7e-43 Score=318.42 Aligned_cols=155 Identities=35% Similarity=0.440 Sum_probs=130.7
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||+.++.|||||++|++|++.||+|++|||+||+.|+||+|+|++|++||+++|+.+++.
T Consensus 368 Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~ 447 (581)
T PLN02623 368 IIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEG 447 (581)
T ss_pred HHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999876443
Q ss_pred HHHHHHhhhccCCCCCCchhhhhhh-------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeeeee
Q psy257 81 KLLTELKSMVSITKQYETIPTCLSY-------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIMLQK 149 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~e~i~~~~a~-------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl~~ 149 (157)
..+..+.... ....++.++.+++. .++++|.+|++|++||||||.+ +|++++++|+|+|+|||+|+++
T Consensus 448 ~~~~~~~~~~-~~~~~~~ia~sA~~~A~~l~a~Ivv~T~sG~tA~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~ 526 (581)
T PLN02623 448 TTPPNLGQAF-KNHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYM 526 (581)
T ss_pred hhhhhhcccc-CCChHHHHHHHHHHHHHhcCCcEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccccEEEec
Confidence 2232221111 11112445555443 2678999999999999999999 5999999999999999999999
Q ss_pred cCCCCCC
Q psy257 150 KSTDPTD 156 (157)
Q Consensus 150 ~~sd~~~ 156 (157)
++++++|
T Consensus 527 ~~~~~~e 533 (581)
T PLN02623 527 QFSDDAE 533 (581)
T ss_pred CCCCCHH
Confidence 8877654
No 15
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=3.7e-36 Score=261.07 Aligned_cols=78 Identities=46% Similarity=0.649 Sum_probs=75.5
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhh
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIW 78 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~ 78 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+++|++|++|++++|+..+
T Consensus 256 Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~ 333 (352)
T PRK06739 256 MIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESVSTLRLVSEFAEHVKK 333 (352)
T ss_pred HHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999997643
No 16
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=2.8e-36 Score=260.73 Aligned_cols=83 Identities=65% Similarity=0.904 Sum_probs=76.0
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++||||||||||||||++||+|||||++||||||+||+||+|||||||+|+||+++|++|++|++++|..+++.
T Consensus 266 ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~~~i~~~~E~~~~~~ 345 (348)
T PF00224_consen 266 IIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTMARIIREAEKYLDYR 345 (348)
T ss_dssp HHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHTS-HH
T ss_pred HHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q psy257 81 KLL 83 (157)
Q Consensus 81 ~~~ 83 (157)
+.|
T Consensus 346 ~~~ 348 (348)
T PF00224_consen 346 NVF 348 (348)
T ss_dssp HHH
T ss_pred ccC
Confidence 766
No 17
>PRK08187 pyruvate kinase; Validated
Probab=99.95 E-value=3.2e-28 Score=219.15 Aligned_cols=72 Identities=39% Similarity=0.578 Sum_probs=69.1
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhh
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIW 78 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~ 78 (157)
||.+|+++||||||||||||||++||+|||||++||||| ||+|||||| +|+||+|+|++|++|+.++|.+..
T Consensus 410 II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~~~ 481 (493)
T PRK08187 410 ILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGHQH 481 (493)
T ss_pred HHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHhhh
Confidence 588999999999999999999999999999999999998 999999997 999999999999999999998743
No 18
>PRK14725 pyruvate kinase; Provisional
Probab=99.95 E-value=3.9e-28 Score=222.04 Aligned_cols=72 Identities=43% Similarity=0.587 Sum_probs=69.4
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhh
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIW 78 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~ 78 (157)
||++|+++||||||||||||||++||+|||||++|||||+ |+|||||| +|+||+|+|++|++|++++|.+..
T Consensus 527 Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~r~e~~~~ 598 (608)
T PRK14725 527 ILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILRRMEEHQR 598 (608)
T ss_pred HHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHHHHHHhhh
Confidence 6899999999999999999999999999999999999999 99999997 999999999999999999997753
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.26 E-value=3.1e-13 Score=99.85 Aligned_cols=48 Identities=23% Similarity=0.062 Sum_probs=42.7
Q ss_pred hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeeeeecCCC
Q psy257 106 MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIMLQKKSTD 153 (157)
Q Consensus 106 a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl~~~~sd 153 (157)
+++++|.+|.+|++||||||.+ +|++++++|||+|+|||+|++++..+
T Consensus 19 ~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~ 70 (117)
T PF02887_consen 19 AIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFD 70 (117)
T ss_dssp EEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHS
T ss_pred EEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEecccc
Confidence 5688999999999999999999 69999999999999999999887765
No 20
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.68 E-value=38 Score=29.14 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=49.1
Q ss_pred ChhHHHhcCCcEEEee----------h----hhHHhh-hCCCC------CchhhhHHHHHHhhCcceeeecCcccCCCCh
Q psy257 1 MIAKCNKVGKPVICAT----------Q----MLESMI-KKPRA------TRAEISDVANAVLDGADCVMLSGETAKGDYP 59 (157)
Q Consensus 1 ii~~c~~~~kPvi~at----------q----~LesM~-~~~~p------tRaEvsDv~nav~dg~d~imLs~ETa~G~~p 59 (157)
+|+.|.+.+.|||+.+ + ++..|. +...| .-....++-.|+..|.+.||.-| ..+|
T Consensus 34 vi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~Dg----S~l~ 109 (283)
T PRK07998 34 ILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDG----AALP 109 (283)
T ss_pred HHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeC----CCCC
Confidence 4678899999999875 1 112222 23334 33356788999999999999944 4678
Q ss_pred H-HHHHHHHHHHHHHHHh
Q psy257 60 V-ECVRAMHNTCKEAEAA 76 (157)
Q Consensus 60 ~-~~v~~~~~i~~~~e~~ 76 (157)
. |=++.-.++.+.+...
T Consensus 110 ~eeNi~~T~~vve~Ah~~ 127 (283)
T PRK07998 110 FEENIAFTKEAVDFAKSY 127 (283)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 7 5777777777776643
No 21
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=64.74 E-value=5.3 Score=32.61 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=31.0
Q ss_pred hHHHhcCCcEEEeehhhHHhhhC--CCCCchhhhHH--HHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIKK--PRATRAEISDV--ANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~--~~ptRaEvsDv--~nav~dg~d~imL 49 (157)
..|++.+.|||+++|+=..-.++ ..|+ .+|+ +.++...||.+|+
T Consensus 164 ~lA~~~~i~vi~~sQlnr~~~~~~~~~p~---l~dl~~sg~Ie~~AD~vl~ 211 (259)
T PF03796_consen 164 ALAKELNIPVIALSQLNREAEDREDKRPS---LSDLRESGAIEQDADVVLF 211 (259)
T ss_dssp HHHHHHTSEEEEEEEBSGGGGGSSSCS-----HHHHCSTSSHHHH-SEEEE
T ss_pred HHHHHcCCeEEEccccChhhhcccccccc---hhhhhhhHHHHHHHhhhhh
Confidence 46889999999999987766543 3555 4555 3667888999998
No 22
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=64.20 E-value=8.2 Score=32.30 Aligned_cols=49 Identities=29% Similarity=0.438 Sum_probs=29.5
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHH-hhCcceeeecCcccCCCChH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAV-LDGADCVMLSGETAKGDYPV 60 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav-~dg~d~imLs~ETa~G~~p~ 60 (157)
+++++-+.|||||++|- .-|-.||.++.+.+ ..|.+-+.|= =-...||.
T Consensus 105 lL~~~A~tgkPvIlSTG---------~stl~EI~~Av~~~~~~~~~~l~ll--HC~s~YP~ 154 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTG---------MSTLEEIERAVEVLREAGNEDLVLL--HCVSSYPT 154 (241)
T ss_dssp HHHHHHTT-S-EEEE-T---------T--HHHHHHHHHHHHHHCT--EEEE--EE-SSSS-
T ss_pred HHHHHHHhCCcEEEECC---------CCCHHHHHHHHHHHHhcCCCCEEEE--ecCCCCCC
Confidence 36788899999999997 45677999998888 5555555442 24566773
No 23
>PRK07695 transcriptional regulator TenI; Provisional
Probab=62.35 E-value=23 Score=27.87 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=34.9
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
.++||+....+ + ..++..+...|+|+|.+.+.=-....|.++++.+.++++
T Consensus 148 ~~ipvia~GGI----------~---~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 148 LSIPVIAIGGI----------T---PENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred CCCCEEEEcCC----------C---HHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 46777766553 2 235666677899999887654445678888887776654
No 24
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=62.14 E-value=20 Score=30.76 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=29.6
Q ss_pred hhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 33 ISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
-+|++.|+..|+||+++..==+.-+.|++-.+-+..-.+
T Consensus 201 ~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 201 PSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 469999999999999998777788899555444444333
No 25
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=60.54 E-value=5.1 Score=31.24 Aligned_cols=31 Identities=32% Similarity=0.557 Sum_probs=21.9
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANA 39 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~na 39 (157)
+|+.-.+.|||||+||-+ +|.|. =|.-++..
T Consensus 68 vi~~I~~~G~PviVAtDV------~p~P~--~V~Kia~~ 98 (138)
T PF04312_consen 68 VIEWISEYGKPVIVATDV------SPPPE--TVKKIARS 98 (138)
T ss_pred HHHHHHHcCCEEEEEecC------CCCcH--HHHHHHHH
Confidence 366678999999999974 34444 35566665
No 26
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=56.87 E-value=11 Score=34.57 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=27.4
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
.|++.|.|||...-+.. -.|++.|+..|||++|+-
T Consensus 339 ~~~~~~v~vIadGGi~~------------~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 339 YARERGVPCIADGGIKN------------SGDICKALALGADCVMLG 373 (495)
T ss_pred HHhhcCCeEEecCCCCC------------HHHHHHHHHcCCCEEEEC
Confidence 46667888887655444 469999999999999993
No 27
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=56.58 E-value=11 Score=33.89 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=27.1
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
.|++.+.|||...-+-. -.||+.|+..|||++|+
T Consensus 322 ~~~~~~vpviadGGi~~------------~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 322 YAAQSGIPVIADGGIRY------------SGDIVKALAAGADAVML 355 (450)
T ss_pred HHhhcCCeEEEeCCCCC------------HHHHHHHHHcCCCEEEE
Confidence 35667889887665544 45999999999999999
No 28
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=55.75 E-value=38 Score=25.32 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=22.4
Q ss_pred CCCchhhhHHHHHHhhCcceeeecCccc
Q psy257 27 RATRAEISDVANAVLDGADCVMLSGETA 54 (157)
Q Consensus 27 ~ptRaEvsDv~nav~dg~d~imLs~ETa 54 (157)
=..|=+..-|..|...|||||++.|--.
T Consensus 36 C~Grv~~~~il~Af~~GADGV~V~gC~~ 63 (124)
T PF02662_consen 36 CSGRVDPEFILRAFEKGADGVLVAGCHP 63 (124)
T ss_pred CCCccCHHHHHHHHHcCCCEEEEeCCCC
Confidence 3446677889999999999999987653
No 29
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=55.18 E-value=35 Score=29.40 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=25.2
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
..|||.+.-+-. -.||..++..|||+++++.
T Consensus 255 ~ipIiasGGIr~------------~~dv~kal~lGAd~V~i~~ 285 (326)
T cd02811 255 DLPLIASGGIRN------------GLDIAKALALGADLVGMAG 285 (326)
T ss_pred CCcEEEECCCCC------------HHHHHHHHHhCCCEEEEcH
Confidence 578888776654 4599999999999999964
No 30
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=54.45 E-value=33 Score=30.28 Aligned_cols=41 Identities=32% Similarity=0.355 Sum_probs=32.5
Q ss_pred hhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHH
Q psy257 33 ISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 73 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~ 73 (157)
-+|++.|+..|+||+++..==+..+.|+.--+-|..-.+.-
T Consensus 261 ~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aG 301 (326)
T PRK11840 261 ASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAG 301 (326)
T ss_pred HHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHH
Confidence 46999999999999999877788899987666665544443
No 31
>TIGR03586 PseI pseudaminic acid synthase.
Probab=52.71 E-value=41 Score=29.42 Aligned_cols=39 Identities=36% Similarity=0.504 Sum_probs=29.5
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imL 49 (157)
++.+-+.|||||+.|-| .|-.|+-.....+. .|.+-|+|
T Consensus 127 L~~va~~gkPvilstG~---------~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 127 IRYVAKTGKPIIMSTGI---------ATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHCCCCcEEE
Confidence 56778889999999885 36679998888886 46643444
No 32
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=52.68 E-value=14 Score=31.99 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=25.2
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++..+.|||-+..+-. -.|++.|+..|||++|+
T Consensus 193 ~~~~~vpVIA~GGI~~------------~~di~kAla~GA~~Vmi 225 (325)
T cd00381 193 ARDYGVPVIADGGIRT------------SGDIVKALAAGADAVML 225 (325)
T ss_pred HhhcCCcEEecCCCCC------------HHHHHHHHHcCCCEEEe
Confidence 4455788886655433 45999999999999999
No 33
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=52.13 E-value=12 Score=34.03 Aligned_cols=33 Identities=39% Similarity=0.532 Sum_probs=24.8
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
|++.+.|||.-.-+-. -.|++.|+..|||++|+
T Consensus 327 ~~~~~~~viadGGi~~------------~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 327 AKKYGIPVIADGGIRY------------SGDIAKALAAGASAVML 359 (486)
T ss_pred hccCCCeEEEcCCCCC------------HHHHHHHHHhCCCEEEE
Confidence 3445788876544333 46999999999999998
No 34
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=51.15 E-value=16 Score=32.25 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=33.6
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..|++.+.|||+.+|+=..-.+ ..+|+.+.+.+ +.++...||.|++
T Consensus 339 ~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~-Sg~ieq~aD~vi~ 386 (434)
T TIGR00665 339 ALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRE-SGSIEQDADIVMF 386 (434)
T ss_pred HHHHHhCCeEEEEeccCcchhccCCCCCChHHHhh-ccchhhcCCEEEE
Confidence 3577999999999998665332 45677655555 3578889999986
No 35
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.84 E-value=17 Score=32.32 Aligned_cols=29 Identities=41% Similarity=0.430 Sum_probs=24.9
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
+.|||.+.-+-.+ .|++.|+..|||++|+
T Consensus 256 ~vpVIAdGGI~~~------------~diakAlalGAd~Vm~ 284 (368)
T PRK08649 256 YVHVIADGGIGTS------------GDIAKAIACGADAVML 284 (368)
T ss_pred CCeEEEeCCCCCH------------HHHHHHHHcCCCeecc
Confidence 5799988876554 5999999999999998
No 36
>PRK00208 thiG thiazole synthase; Reviewed
Probab=48.06 E-value=48 Score=28.25 Aligned_cols=55 Identities=33% Similarity=0.361 Sum_probs=38.7
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHH
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 74 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e 74 (157)
.+.|||+-.. +=| -+|++.++..|+|++++.+==+..+.|..-.+.+...++.-.
T Consensus 174 ~~vpVIveaG---------I~t---peda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 174 ADVPVIVDAG---------IGT---PSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred cCCeEEEeCC---------CCC---HHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 4667777543 222 359999999999999997666667788777666665555433
No 37
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=47.90 E-value=22 Score=32.65 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=27.0
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
.+++.|+|||--.-+=. -.|++.|+..|||++|+.+
T Consensus 323 ~~~~~~~~viadGgi~~------------~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 323 EARKLGGHVWADGGVRH------------PRDVALALAAGASNVMVGS 358 (475)
T ss_pred HHHHcCCcEEEeCCCCC------------HHHHHHHHHcCCCEEeech
Confidence 34677888886554322 3599999999999999954
No 38
>PRK06321 replicative DNA helicase; Provisional
Probab=46.47 E-value=21 Score=32.61 Aligned_cols=45 Identities=16% Similarity=0.431 Sum_probs=34.3
Q ss_pred HHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHHHHhhCcceeee
Q psy257 4 KCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
.|++.+.|||+..|+=-...+ +.+|.-+++-| +.++...||-||+
T Consensus 374 lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLRe-SG~IEqdAD~v~~ 420 (472)
T PRK06321 374 LARELNIPILCLSQLSRKVEDRANHRPMMSDLRE-SGSIEQDSDLVMF 420 (472)
T ss_pred HHHHhCCcEEEEeecChhhhccCCCCCCHHHHhh-cccccccCCEEEE
Confidence 577999999999998665544 34676555554 4588999999998
No 39
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=46.13 E-value=40 Score=28.70 Aligned_cols=60 Identities=32% Similarity=0.369 Sum_probs=42.6
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHh
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 76 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~ 76 (157)
+++...|||+=.- +=+ -||++.|...|+|+|++-.--+..+.|+.-.+-++.-++.-...
T Consensus 171 ~~~~~vPvIvDAG---------iG~---pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR~a 230 (247)
T PF05690_consen 171 IERADVPVIVDAG---------IGT---PSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGRLA 230 (247)
T ss_dssp HHHGSSSBEEES------------S---HHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcEEEeCC---------CCC---HHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 4566888887432 222 46999999999999999877788999988777776665554433
No 40
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=45.91 E-value=55 Score=27.87 Aligned_cols=42 Identities=36% Similarity=0.408 Sum_probs=32.2
Q ss_pred hhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHH
Q psy257 33 ISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 74 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e 74 (157)
-+|++.|...|+|++++.+==+.++.|..-.+.+...++.-.
T Consensus 187 peda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 187 PSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 359999999999999997666667788877777766655443
No 41
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=45.89 E-value=31 Score=24.50 Aligned_cols=35 Identities=9% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCcEEEeehhhHHhhhCC-CCCchhhhHHHHHHhhC
Q psy257 9 GKPVICATQMLESMIKKP-RATRAEISDVANAVLDG 43 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~-~ptRaEvsDv~nav~dg 43 (157)
-+-+++.+++.+.++++. ..+|.|..-+.++.+++
T Consensus 29 y~~cF~GsElVdWL~~~~~~~sR~eAv~lgq~Ll~~ 64 (85)
T cd04441 29 YERTFVGSEFIDWLLQEGEAESRREAVQLCRRLLEH 64 (85)
T ss_pred cCCEeEchHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 355789999999999988 58999999999988764
No 42
>PRK05748 replicative DNA helicase; Provisional
Probab=45.85 E-value=25 Score=31.40 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=32.4
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHH--HHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVA--NAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~--nav~dg~d~imL 49 (157)
..|++.+.|||+.+|+=..-.+ ..+|. ++|+- .++...||.||+
T Consensus 349 ~lAke~~i~vi~lsQlnr~~~~r~~k~p~---lsdlr~Sg~Ieq~AD~v~~ 396 (448)
T PRK05748 349 ALAKELKVPVIALSQLSRGVEQRQDKRPV---MSDIRESGSIEQDADIVAF 396 (448)
T ss_pred HHHHHhCCeEEEecccChhHhhcCCCCCC---hHHHHhhcchhcCCCEEEE
Confidence 3578999999999998765433 34565 55654 567889999988
No 43
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=43.19 E-value=27 Score=25.36 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=29.7
Q ss_pred CCcEEEeehhhHHhhhCC-CCCchhhhHHHHHHhhC
Q psy257 9 GKPVICATQMLESMIKKP-RATRAEISDVANAVLDG 43 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~-~ptRaEvsDv~nav~dg 43 (157)
.+-+++.+++.+.++.+. .+||.|..-+.++.+++
T Consensus 34 y~~cFvGsElVdWLi~~g~~~tR~eAv~~gq~Ll~~ 69 (93)
T cd04440 34 YKSVVPASKLVDWLLAQGDCRTREEAVILGVGLCNN 69 (93)
T ss_pred cccccchhHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 345788999999999954 89999999999988765
No 44
>PRK15447 putative protease; Provisional
Probab=43.14 E-value=30 Score=29.53 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=31.2
Q ss_pred chhhhHHHHHHhh-CcceeeecCcccCCC---ChHHHHHHHHHHHHHHHH
Q psy257 30 RAEISDVANAVLD-GADCVMLSGETAKGD---YPVECVRAMHNTCKEAEA 75 (157)
Q Consensus 30 RaEvsDv~nav~d-g~d~imLs~ETa~G~---~p~~~v~~~~~i~~~~e~ 75 (157)
+..+.|.+-++.+ |||+|.+. |...|. |-.+-++-.-+.++++.+
T Consensus 14 ~~~~~~~~~~~~~~gaDaVY~g-~~~~~~R~~f~~~~l~e~v~~~~~~gk 62 (301)
T PRK15447 14 KETVRDFYQRAADSPVDIVYLG-ETVCSKRRELKVGDWLELAERLAAAGK 62 (301)
T ss_pred CCCHHHHHHHHHcCCCCEEEEC-CccCCCccCCCHHHHHHHHHHHHHcCC
Confidence 4567899999988 99999994 655554 655555555555555443
No 45
>PF10930 DUF2737: Protein of unknown function (DUF2737); InterPro: IPR020295 The proteins in this entry are uncharacterised.
Probab=42.47 E-value=12 Score=24.59 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=21.6
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhh
Q psy257 9 GKPVICATQMLESMIKKPRATRAEIS 34 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvs 34 (157)
.-|-|.-|++.-.+...|.|||.|.-
T Consensus 6 ~np~i~~~e~v~r~r~~PmPsREELl 31 (54)
T PF10930_consen 6 YNPDILPTELVIRQRFKPMPSREELL 31 (54)
T ss_pred cCcchhHHHHHHHhcCCCCCCHHHHH
Confidence 34777888899888889999999963
No 46
>PRK08840 replicative DNA helicase; Provisional
Probab=42.28 E-value=22 Score=32.35 Aligned_cols=46 Identities=20% Similarity=0.422 Sum_probs=33.2
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..|++.+.|||+.+|+=-.-.+ +.+|.-+++-| ..++...||.||+
T Consensus 363 ~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLre-SG~IEqdAD~v~~ 410 (464)
T PRK08840 363 ALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRE-SGSIEQDADLIMF 410 (464)
T ss_pred HHHHHhCCeEEEEEecCccccccCCCCCchHhhhh-cccccccCCEEEE
Confidence 3578999999999998544332 45666544444 4578899999998
No 47
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.95 E-value=29 Score=31.41 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=24.6
Q ss_pred HhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 6 NKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 6 ~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++.+.|||...-+-. -.|++.|+..|||+||+
T Consensus 253 ~~~~vpVIAdGGI~~------------~~Di~KALalGA~aVmv 284 (404)
T PRK06843 253 KNTNICIIADGGIRF------------SGDVVKAIAAGADSVMI 284 (404)
T ss_pred hhcCCeEEEeCCCCC------------HHHHHHHHHcCCCEEEE
Confidence 445788887655433 35999999999999998
No 48
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=41.18 E-value=93 Score=24.08 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=26.6
Q ss_pred hHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 34 SDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
.++..+...|+|++.+.+-=-.-..|.++++.+.+.+++
T Consensus 172 ~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 172 ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA 210 (212)
T ss_pred HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence 466667777999999854322345688888877666554
No 49
>PRK07004 replicative DNA helicase; Provisional
Probab=41.10 E-value=35 Score=30.94 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=33.4
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..|++.+.|||+.+|+=-...+ +.+|.-+++-|- .++...||-||+
T Consensus 358 ~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS-g~IeqdAD~v~~ 405 (460)
T PRK07004 358 SLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRES-GAIEQDADVILF 405 (460)
T ss_pred HHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcc-hhhhhcCCEEEE
Confidence 4588999999999998555443 456664444433 468899999998
No 50
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=40.62 E-value=33 Score=23.77 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=28.9
Q ss_pred CcEEEeehhhHHhhhCC--CCCchhhhHHHHHHhhC
Q psy257 10 KPVICATQMLESMIKKP--RATRAEISDVANAVLDG 43 (157)
Q Consensus 10 kPvi~atq~LesM~~~~--~ptRaEvsDv~nav~dg 43 (157)
+-+++..++.+.|.++. ..||.|...+++..++.
T Consensus 27 ~~cF~G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~ 62 (83)
T cd04449 27 SNCFIGSEAVSWLINNFEDVDTREEAVELGQELMNE 62 (83)
T ss_pred CcceEhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 45788999999999983 79999999999988763
No 51
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=40.59 E-value=23 Score=27.29 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=18.2
Q ss_pred chhhhHHHHHHhhCcceeeecC
Q psy257 30 RAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 30 RaEvsDv~nav~dg~d~imLs~ 51 (157)
|-+.+=|..|...|+|||++.|
T Consensus 40 rvn~~fvl~Al~~GaDGV~v~G 61 (132)
T COG1908 40 RVNPEFVLKALRKGADGVLVAG 61 (132)
T ss_pred ccCHHHHHHHHHcCCCeEEEec
Confidence 3455678999999999999976
No 52
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=40.38 E-value=29 Score=24.15 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=28.6
Q ss_pred CcEEEeehhhHHhhhCC-CCCchhhhHHHHHHhhC
Q psy257 10 KPVICATQMLESMIKKP-RATRAEISDVANAVLDG 43 (157)
Q Consensus 10 kPvi~atq~LesM~~~~-~ptRaEvsDv~nav~dg 43 (157)
+-+++.+++.+.|+.+. ..+|.|..-++++.++.
T Consensus 26 ~~cF~GselVdWL~~~~~~~~R~eAv~~gq~Ll~~ 60 (81)
T cd04448 26 TNCILGKELVNWLIRQGKAATRVQAIAIGQALLDA 60 (81)
T ss_pred CcccChHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 45678999999999876 59999999999988754
No 53
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.56 E-value=28 Score=31.90 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=26.2
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
+++.|+|||....+=. -.|++.|+..|||++|+
T Consensus 326 ~~~~~~~via~ggi~~------------~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 326 ARELGAHVWADGGVRH------------PRDVALALAAGASNVMI 358 (479)
T ss_pred HHhcCCcEEecCCCCC------------HHHHHHHHHcCCCeeec
Confidence 3466899998766433 26999999999999998
No 54
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=39.48 E-value=32 Score=30.10 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=23.9
Q ss_pred hcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 7 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 7 ~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
...+|||.-.-+-. -.||+.|+..|||++|+.
T Consensus 196 a~~~pVIadGGIr~------------~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 196 AARKPIIADGGIRT------------HGDIAKSIRFGASMVMIG 227 (321)
T ss_pred hcCCeEEEECCcCc------------HHHHHHHHHcCCCEEeec
Confidence 34677776555433 369999999999999994
No 55
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=39.03 E-value=58 Score=27.56 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=29.5
Q ss_pred hhHHHHHHhhCcceeeecCcccCCCC------hHHHHHHHHHHHHHHHHh
Q psy257 33 ISDVANAVLDGADCVMLSGETAKGDY------PVECVRAMHNTCKEAEAA 76 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs~ETa~G~~------p~~~v~~~~~i~~~~e~~ 76 (157)
+.|+-.-...|+||||+.++ |.+ +.+.+..|..|+.+.-..
T Consensus 32 ~~ea~~l~~~GvDgiiveN~---~D~Py~~~~~~etvaaM~~i~~~v~~~ 78 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENM---GDVPYPKRVGPETVAAMARIAREVRRE 78 (254)
T ss_pred HHHHHHHHHCCCCEEEEecC---CCCCccCCCCHHHHHHHHHHHHHHHHh
Confidence 34555566789999999754 444 448999999998876443
No 56
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=38.93 E-value=1.4e+02 Score=24.49 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=35.1
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-CcceeeecCcccCCCChHHHHHHHHHHHHHH
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLSGETAKGDYPVECVRAMHNTCKEA 73 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~d~imLs~ETa~G~~p~~~v~~~~~i~~~~ 73 (157)
..|||+.+- .++-.|.-+.+....+ |+|++|+..---...-+-+.+++...|++..
T Consensus 66 ~~~vi~gv~---------~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~ 122 (281)
T cd00408 66 RVPVIAGVG---------ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS 122 (281)
T ss_pred CCeEEEecC---------CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 467776652 3444566666655444 9999999654323333467777777777664
No 57
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=38.84 E-value=43 Score=29.33 Aligned_cols=36 Identities=39% Similarity=0.572 Sum_probs=28.1
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-Ccc
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GAD 45 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~d 45 (157)
+|+.+-+.|||||+.|-| .|-.|+-.....+.. |.+
T Consensus 125 LL~~~A~~gkPvilStGm---------atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 125 LLKKIARFGKPVILSTGM---------ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred HHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHcCCC
Confidence 367788899999999985 356789888888874 544
No 58
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=38.66 E-value=35 Score=29.88 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=24.6
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
.++|||...-+-. -.||+.|+..|||++|+.+
T Consensus 200 ~~ipVIAdGGI~~------------~~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 200 ARKPIIADGGIRT------------HGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred cCCCEEEeCCCCC------------HHHHHHHHHhCCCEEEech
Confidence 4678776655444 3499999999999999964
No 59
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=38.33 E-value=33 Score=30.35 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=32.0
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhh
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIW 78 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~ 78 (157)
+.|+|-.+-+.. ..|+...++-|||+||+.. +.-..+ -..+.+|.++.+..+.
T Consensus 253 ~ipIig~GGI~s------------~~da~e~i~aGA~~Vqi~t--a~~~~g---p~ii~~I~~~L~~~l~ 305 (420)
T PRK08318 253 GLPISGIGGIET------------WRDAAEFILLGAGTVQVCT--AAMQYG---FRIVEDMISGLSHYMD 305 (420)
T ss_pred CCCEEeecCcCC------------HHHHHHHHHhCCChheeee--eeccCC---chhHHHHHHHHHHHHH
Confidence 456665554443 4499999999999999943 322212 2345555666555443
No 60
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=38.15 E-value=72 Score=24.89 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=24.1
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchh-hhHHHHHHhhCcceeeec
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAE-ISDVANAVLDGADCVMLS 50 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaE-vsDv~nav~dg~d~imLs 50 (157)
+..|++.|+|++++- ++-.+ ..++..+...|+|-+-+.
T Consensus 95 i~~~~~~g~~~~~~~-----------~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 95 VKAAKKHGKEVQVDL-----------INVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHcCCEEEEEe-----------cCCCChHHHHHHHHHcCCCEEEEc
Confidence 567888899888741 11111 245566666699988763
No 61
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=37.84 E-value=23 Score=31.48 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=24.9
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
.+++++.|||-=.-+=. --||+.|+..|||+|||-
T Consensus 206 ~a~~~~v~iIADGGi~~------------sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 206 AARDYGVPIIADGGIRT------------SGDIVKALAAGADAVMLG 240 (352)
T ss_dssp HHHCTTSEEEEESS-SS------------HHHHHHHHHTT-SEEEES
T ss_pred HhhhccCceeecCCcCc------------ccceeeeeeecccceeec
Confidence 45667788886444322 569999999999999993
No 62
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=37.81 E-value=1.1e+02 Score=24.54 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=29.1
Q ss_pred hHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHH
Q psy257 34 SDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTC 70 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~ 70 (157)
..+..+...|++++.....--..+.|.++++.++++.
T Consensus 198 ~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 198 KMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred HHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 3477778889999988776667778988888887764
No 63
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=37.53 E-value=1.9e+02 Score=23.69 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=46.1
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
++.|++.|..|.+.. ....+-+..++.+++..+. .|+|.|.| ..|.=.-+|.+.-+.+..+.+.
T Consensus 116 i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l-~DT~G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 116 VGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRF-ADTVGILDPFTTYELIRRLRAA 180 (259)
T ss_pred HHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEe-CCCCCCCCHHHHHHHHHHHHHh
Confidence 568889998876543 2344566777888877654 58999999 5677788898877777666543
No 64
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=37.34 E-value=38 Score=29.01 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=34.1
Q ss_pred EeehhhHHhhhCCCCCchhhh-HHHHHHhhCcceeeecCc-ccCCCChHHHH
Q psy257 14 CATQMLESMIKKPRATRAEIS-DVANAVLDGADCVMLSGE-TAKGDYPVECV 63 (157)
Q Consensus 14 ~atq~LesM~~~~~ptRaEvs-Dv~nav~dg~d~imLs~E-Ta~G~~p~~~v 63 (157)
|+-.+||+|++-.+ -++- -.-.++..|-.+++|||- ++.|+-|++=-
T Consensus 28 Cg~~~L~~Mi~vt~---~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf 76 (275)
T COG1856 28 CGRHYLEHMIKVTT---KSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKF 76 (275)
T ss_pred HHHHHHHHhcccch---HHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHH
Confidence 35689999986544 3332 335678899999999975 68899997643
No 65
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=37.09 E-value=42 Score=26.57 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=30.2
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHH--HHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVA--NAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~--nav~dg~d~imL 49 (157)
..|++.|.|+|+.+|+=..-.+ ...|+ .+|+. .++...+|+++.
T Consensus 157 ~la~~~~~~ii~~~q~~r~~~~~~~~~~~---~~~~~gS~~i~~~aD~vi~ 204 (242)
T cd00984 157 LLAKELNVPVIALSQLSRGVESRADKRPM---LSDLRESGSIEQDADVVMF 204 (242)
T ss_pred HHHHHhCCeEEEecccChhhhccCCCCCC---HHHHhhhcccccCCCEEEE
Confidence 4577899999999998654222 23455 44554 456678999985
No 66
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.88 E-value=1.2e+02 Score=25.28 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=23.7
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
.+.|||....+-. ..|+..++..|||+||+..
T Consensus 230 ~~ipii~~GGI~~------------~~da~~~l~~GAd~V~igr 261 (296)
T cd04740 230 VEIPIIGVGGIAS------------GEDALEFLMAGASAVQVGT 261 (296)
T ss_pred cCCCEEEECCCCC------------HHHHHHHHHcCCCEEEEch
Confidence 4677776655433 3589999999999999953
No 67
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=36.66 E-value=78 Score=30.16 Aligned_cols=21 Identities=43% Similarity=0.446 Sum_probs=18.4
Q ss_pred chhhhHHHHHHhhCcceee-ec
Q psy257 30 RAEISDVANAVLDGADCVM-LS 50 (157)
Q Consensus 30 RaEvsDv~nav~dg~d~im-Ls 50 (157)
-.|+..+--|+.-|||.|| ||
T Consensus 232 eeEveK~~~A~~~GADtvMDLS 253 (607)
T PRK09284 232 EEEVEKMVWATRWGADTVMDLS 253 (607)
T ss_pred HHHHHHHHHHHHcCCCEEEecC
Confidence 4588889999999999999 75
No 68
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=35.60 E-value=34 Score=30.42 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=24.4
Q ss_pred CcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 10 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 10 kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
.|||.+.-+-.+ .|++.|+..|||++|+
T Consensus 256 vpVIAdGGI~tg------------~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 256 VHVIADGGIETS------------GDLVKAIACGADAVVL 283 (369)
T ss_pred ceEEEeCCCCCH------------HHHHHHHHcCCCEeee
Confidence 799988876654 4999999999999999
No 69
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=35.26 E-value=1e+02 Score=27.19 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=15.8
Q ss_pred hhHHHHHHhhCcceeee
Q psy257 33 ISDVANAVLDGADCVML 49 (157)
Q Consensus 33 vsDv~nav~dg~d~imL 49 (157)
-.||..++..|||+||+
T Consensus 288 g~Di~kaLalGA~~V~i 304 (351)
T cd04737 288 GEHVFKALASGADAVAV 304 (351)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 56999999999999999
No 70
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=35.18 E-value=79 Score=26.40 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=32.1
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhh
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAI 77 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~ 77 (157)
.+.|||...-+.. ..|+...+..|||+||+.-. .. ..| .+..++.++.++..
T Consensus 233 ~~ipvi~~GGI~s------------~~da~~~l~~GAd~V~igr~-~l-~~p----~~~~~i~~~l~~~~ 284 (300)
T TIGR01037 233 VDIPIIGVGGITS------------FEDALEFLMAGASAVQVGTA-VY-YRG----FAFKKIIEGLIAFL 284 (300)
T ss_pred CCCCEEEECCCCC------------HHHHHHHHHcCCCceeecHH-Hh-cCc----hHHHHHHHHHHHHH
Confidence 4677776655433 35888888899999999422 22 234 34455555555443
No 71
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=34.96 E-value=56 Score=22.97 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=29.6
Q ss_pred CCcEEEeehhhHHhhhCCC-CCchhhhHHHHHHhhC
Q psy257 9 GKPVICATQMLESMIKKPR-ATRAEISDVANAVLDG 43 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~-ptRaEvsDv~nav~dg 43 (157)
.+-+++.+++.+.|+.+.. .||.|..-+.++.+++
T Consensus 25 y~~cF~GselVdWL~~~~~~~sR~eAv~lgq~Ll~~ 60 (82)
T cd04442 25 YPNCFVGKELIDWLIEHKEASDRETAIKIMQKLLDH 60 (82)
T ss_pred cCceeEcHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3457889999999999885 7999999999988765
No 72
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=34.67 E-value=43 Score=30.95 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=25.9
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
+++.+.|||...-+-. -.|+..|+..|||++|+
T Consensus 347 ~~~~~vpVIadGGI~~------------~~di~kAla~GA~~V~v 379 (505)
T PLN02274 347 AAQHGVPVIADGGISN------------SGHIVKALTLGASTVMM 379 (505)
T ss_pred HHhcCCeEEEeCCCCC------------HHHHHHHHHcCCCEEEE
Confidence 4556788887766443 35999999999999998
No 73
>PRK08760 replicative DNA helicase; Provisional
Probab=34.31 E-value=37 Score=30.95 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=33.5
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..|++.+.|||+.+|+=-.-.+ +.+|..+++-|- .++...||.||+
T Consensus 373 ~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS-g~IeqdAD~vl~ 420 (476)
T PRK08760 373 GLAKELNVPVIALSQLNRSLETRTDKRPVMADLRES-GAIEQDADMIVF 420 (476)
T ss_pred HHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhc-cchhcCCCEEEE
Confidence 4688999999999998544332 356775555443 578899999998
No 74
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=33.84 E-value=48 Score=29.49 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=23.7
Q ss_pred hHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCc
Q psy257 3 AKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGE 52 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~E 52 (157)
+.+++.+.|||. .. ..| ..|+-.+...|+|+|| -|+
T Consensus 182 ~~i~~~~IPVI~-G~---------V~t---~e~A~~~~~aGaDgV~-~G~ 217 (369)
T TIGR01304 182 EFIGELDVPVIA-GG---------VND---YTTALHLMRTGAAGVI-VGP 217 (369)
T ss_pred HHHHHCCCCEEE-eC---------CCC---HHHHHHHHHcCCCEEE-ECC
Confidence 456667778775 33 222 3466777778999999 454
No 75
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=33.62 E-value=57 Score=28.06 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred ChhHHHhc-CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-CcceeeecC
Q psy257 1 MIAKCNKV-GKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLSG 51 (157)
Q Consensus 1 ii~~c~~~-~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~d~imLs~ 51 (157)
+++..+++ .+||++ +..|.-.++.+++.++.+ |+|+|.+++
T Consensus 154 iv~~v~~~~~iPv~v----------Kl~p~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 154 ILRAVKSAVTIPVAV----------KLSPFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred HHHHHHhccCCCEEE----------EcCCCccCHHHHHHHHHHcCCCeEEEEc
No 76
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=33.61 E-value=40 Score=28.24 Aligned_cols=38 Identities=8% Similarity=0.023 Sum_probs=28.7
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+|..|+..|.+.++ |+...+-.++..++..|+++||+.
T Consensus 61 ~i~a~~~~g~~~lV------------Rvp~~~~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 61 QLMALKGSASAPVV------------RVPTNEPVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred HHHHHhhcCCCcEE------------ECCCCCHHHHHHHhCCCCCeeeec
Confidence 35677788888876 444445678888888999999993
No 77
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.20 E-value=83 Score=25.67 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=23.8
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++.|++.|.|++=. .-| .|++..|...|+|.|=+
T Consensus 90 i~~a~~~~i~~iPG-----------~~T---ptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 90 LAAANDSDVPLLPG-----------AAT---PSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHcCCCEeCC-----------CCC---HHHHHHHHHCCCCEEEE
Confidence 55666667666632 122 45788888889999999
No 78
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=32.83 E-value=30 Score=30.84 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=25.6
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
.+++.|+|||-=.-+ .+ .-||+.|+..|||++||-
T Consensus 208 ~a~~~gvpiIADGGi---------~~---sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 208 AAHGLGGQIVSDGGC---------TV---PGDVAKAFGGGADFVMLG 242 (346)
T ss_pred HHHHcCCCEEecCCc---------cc---ccHHHHHHHcCCCEEEeC
Confidence 356678888853332 22 469999999999999993
No 79
>PRK08506 replicative DNA helicase; Provisional
Probab=32.51 E-value=49 Score=30.07 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=32.9
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHH--HHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDV--ANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv--~nav~dg~d~imL 49 (157)
..|++.+.|||+..|+=-.-.+ +.+|+ ++|+ +.++.+.||.||+
T Consensus 336 ~lAkel~ipVi~lsQLnR~~e~r~~krP~---lsDLreSg~IeqdAD~vl~ 383 (472)
T PRK08506 336 LLARELDIPIIALSQLNRSLESRADKRPM---LSDLRESGAIEQDADIILF 383 (472)
T ss_pred HHHHHhCCcEEEEeecCcchhhccCCCCC---hHHhhcchhhhhcCCEEEE
Confidence 3588999999999998554432 34666 5566 4679999999998
No 80
>PRK09165 replicative DNA helicase; Provisional
Probab=32.39 E-value=48 Score=30.39 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=33.2
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..|++.+.|||+.+|+=-.-.+ +.+|+.+++-|- .++.+.||.||+
T Consensus 377 ~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~S-g~IEqdAD~v~~ 424 (497)
T PRK09165 377 ALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRES-GSIEQDADVVMF 424 (497)
T ss_pred HHHHHhCCeEEEeecccchhhccCCCCCchhhhhhc-cchhccCCEEEE
Confidence 4678999999999997655433 346665544443 468899999887
No 81
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=32.32 E-value=2.1e+02 Score=23.94 Aligned_cols=66 Identities=24% Similarity=0.191 Sum_probs=45.8
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
++.+++.|+-|.++ - +|...++.+..++.+++..+. .|+|.|.|. .|.=.-.|.+.-+.++.+.++
T Consensus 124 i~~ak~~G~~v~~~-i---~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 124 IKAVKKAGKHVEGA-I---CYTGSPVHTLEYYVKLAKELEDMGADSICIK-DMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred HHHHHHCCCeEEEE-E---EecCCCCCCHHHHHHHHHHHHHcCCCEEEEc-CCCCCCCHHHHHHHHHHHHHh
Confidence 56778888776642 1 233346777778887776654 499999995 677777888877777766644
No 82
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.25 E-value=34 Score=31.39 Aligned_cols=41 Identities=24% Similarity=0.545 Sum_probs=34.8
Q ss_pred hhHHHHHHhhCcceeeecCc-ccCCCChHHHHHHHHHHHHHHHHhh
Q psy257 33 ISDVANAVLDGADCVMLSGE-TAKGDYPVECVRAMHNTCKEAEAAI 77 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs~E-Ta~G~~p~~~v~~~~~i~~~~e~~~ 77 (157)
|.|-+-+++||= |+||-+ ...|.|| ++..++.+.+-+.+..
T Consensus 325 iaD~~RsILDGH--IvLsR~LA~~ghyP--aIdvl~SiSRvm~~i~ 366 (441)
T COG1157 325 IADEVRSILDGH--IVLSRALAEAGHYP--AIDVLASISRVMPQIV 366 (441)
T ss_pred hhhhhhhhccce--EEeeHhHHhcCCCC--CcchHHHHHHHhhhcC
Confidence 779999999997 999999 8899999 8888888877766543
No 83
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=32.04 E-value=89 Score=27.86 Aligned_cols=66 Identities=18% Similarity=0.075 Sum_probs=42.2
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCC-ChHHHHHHHHHHHHHHHHh
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGD-YPVECVRAMHNTCKEAEAA 76 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~-~p~~~v~~~~~i~~~~e~~ 76 (157)
.+|.|+--.==.++.....+...=+++|-.|++.|||||..+- ..|. +--+-++.+.+++++++.+
T Consensus 125 ~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tv--y~Gs~~E~~ml~~l~~i~~ea~~~ 191 (348)
T PRK09250 125 KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATI--YFGSEESRRQIEEISEAFEEAHEL 191 (348)
T ss_pred CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHh
Confidence 5777775332112211123456667899999999999998853 4443 3355667777777777765
No 84
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=31.74 E-value=80 Score=30.76 Aligned_cols=55 Identities=24% Similarity=0.174 Sum_probs=38.1
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 74 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e 74 (157)
+++.|+++||||-++.++-.. . -..+.-.+..|++.+..+.+ .+..++..+.++|
T Consensus 727 vi~~a~~~g~~vgicge~~~~--------~--p~~~~~l~~~G~~~ls~~~d---------~~~~~k~~i~~~e 781 (782)
T TIGR01418 727 AIKAAKEHGKKVGICGQAPSD--------Y--PEVVEFLVEEGIDSISLNPD---------AVLRTRLQVAEVE 781 (782)
T ss_pred HHHHHHhcCCeEEEeCCCCCC--------C--HHHHHHHHHcCCCEEEECcc---------hHHHHHHHHHHhc
Confidence 478899999999988764310 0 12455667789999999654 5556666676666
No 85
>PLN02444 HMP-P synthase
Probab=31.60 E-value=1.1e+02 Score=29.37 Aligned_cols=20 Identities=45% Similarity=0.508 Sum_probs=17.8
Q ss_pred hhhhHHHHHHhhCcceee-ec
Q psy257 31 AEISDVANAVLDGADCVM-LS 50 (157)
Q Consensus 31 aEvsDv~nav~dg~d~im-Ls 50 (157)
.|+..+--|+.-|||.|| ||
T Consensus 238 ~EveK~~~A~~~GADTvMDLS 258 (642)
T PLN02444 238 EEVYKLQWATMWGADTVMDLS 258 (642)
T ss_pred HHHHHHHHHHHcCCCeEeecc
Confidence 588889999999999999 65
No 86
>PRK05636 replicative DNA helicase; Provisional
Probab=31.56 E-value=46 Score=30.69 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=33.0
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHH--HHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVAN--AVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~n--av~dg~d~imL 49 (157)
..|++.+.|||+.+|+=..-.+ +.+|. ++|+-. ++...||.||+
T Consensus 409 ~lAkel~ipVi~lsQLnR~~e~r~dkrP~---lsDLreSG~IEqdAD~vl~ 456 (505)
T PRK05636 409 LLAKELDVPLIAISQLNRGPESRTDKRPQ---LADLRESGSLEQDADMVML 456 (505)
T ss_pred HHHHHhCCeEEEEeecCccccccCCCCCc---HHHHhhcccccccCCEEEE
Confidence 3678899999999998776543 23555 555543 78899999888
No 87
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=31.41 E-value=1.2e+02 Score=23.93 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=30.2
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
++..+.|+++..-+- + ..|+...+..|+|.+++..+ +.+-.+.+.++.++
T Consensus 69 ~~~~~~pv~~~GgI~---------~---~e~~~~~~~~Gad~vvigs~------~l~dp~~~~~i~~~ 118 (234)
T cd04732 69 VKAVGIPVQVGGGIR---------S---LEDIERLLDLGVSRVIIGTA------AVKNPELVKELLKE 118 (234)
T ss_pred HHhcCCCEEEeCCcC---------C---HHHHHHHHHcCCCEEEECch------HHhChHHHHHHHHH
Confidence 444578888765522 1 44677777789999998433 33334445555444
No 88
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=31.39 E-value=47 Score=23.33 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.6
Q ss_pred CcEEEeehhhHHhhhCC-CCCchhhhHHHHHHhhC
Q psy257 10 KPVICATQMLESMIKKP-RATRAEISDVANAVLDG 43 (157)
Q Consensus 10 kPvi~atq~LesM~~~~-~ptRaEvsDv~nav~dg 43 (157)
+-+++.+++.+.|.++. ..||+|..-++++.++.
T Consensus 28 ~~cF~GselVdWL~~~~~~~sR~eAv~lg~~Ll~~ 62 (83)
T cd04443 28 KGVFCGCDLVSWLIEVGLAQDRGEAVLYGRRLLQG 62 (83)
T ss_pred cccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 44678899999999864 69999999999988764
No 89
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=30.78 E-value=50 Score=26.80 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=22.8
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++.|++.|.|+|=.. -| -|++..|...|+|.+=|
T Consensus 94 ~~~~~~~~i~~iPG~-----------~T---ptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 94 IEYAREYGIPYIPGV-----------MT---PTEIMQALEAGADIVKL 127 (196)
T ss_dssp HHHHHHHTSEEEEEE-----------SS---HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHcCCcccCCc-----------CC---HHHHHHHHHCCCCEEEE
Confidence 456666666666321 12 45788899999999999
No 90
>PRK15447 putative protease; Provisional
Probab=30.67 E-value=84 Score=26.75 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=31.5
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+++.|+++||.|++++.-+- ....|...+...+..|.|+|+..
T Consensus 53 ~v~~~~~~gkkvyva~p~i~-------~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 53 LAERLAAAGKEVVLSTLALV-------EAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred HHHHHHHcCCEEEEEecccc-------cCHHHHHHHHHHHhcCCCEEEEe
Confidence 36789999999999984221 11347778888888888988863
No 91
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=30.62 E-value=1.3e+02 Score=25.31 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=15.9
Q ss_pred hhHHHHHHhhCcceeeec
Q psy257 33 ISDVANAVLDGADCVMLS 50 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs 50 (157)
-.|+..++..|||+||+.
T Consensus 239 ~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 239 GTDVLKALALGADAVLIG 256 (299)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 459999999999999994
No 92
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=30.24 E-value=1.1e+02 Score=26.83 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=24.4
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
+.|||...-+-. -.|+..++..|||++++..
T Consensus 261 ~ipvia~GGI~~------------~~dv~k~l~~GAd~v~ig~ 291 (352)
T PRK05437 261 DLPIIASGGIRN------------GLDIAKALALGADAVGMAG 291 (352)
T ss_pred CCeEEEECCCCC------------HHHHHHHHHcCCCEEEEhH
Confidence 678887766544 3599999999999999953
No 93
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=30.06 E-value=1.2e+02 Score=26.09 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=36.5
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhH
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 79 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~ 79 (157)
.+.|+|-..-+-. ..|+...+..|||+|++...--. +.-+.+.+|+++.+.....
T Consensus 238 ~~ipIig~GGI~s------------~~Da~e~l~aGA~~V~v~t~~~~-----~g~~~~~~i~~~L~~~l~~ 292 (334)
T PRK07565 238 VGADLAATTGVHD------------AEDVIKMLLAGADVVMIASALLR-----HGPDYIGTILRGLEDWMER 292 (334)
T ss_pred cCCCEEEECCCCC------------HHHHHHHHHcCCCceeeehHHhh-----hCcHHHHHHHHHHHHHHHH
Confidence 3677776655443 45999999999999999632222 1225677777777766543
No 94
>PRK08227 autoinducer 2 aldolase; Validated
Probab=29.91 E-value=2e+02 Score=24.47 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=40.8
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
...||++|.- ...+.+.=...+.+++..|+-|+..-=---.-..|...++-++.|+.+
T Consensus 191 ~~vPVviaGG-------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~ 248 (264)
T PRK08227 191 CPVPIVIAGG-------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE 248 (264)
T ss_pred CCCcEEEeCC-------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence 3579998854 111445557789999999999988732223346788888888888765
No 95
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.83 E-value=60 Score=26.51 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=24.5
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++.|++.|.|++-- .-| -+++..|...|+|.+=|
T Consensus 94 ~~~~~~~~i~~iPG-----------~~T---ptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 94 AKHAQDHGIPIIPG-----------VAT---PSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHcCCcEECC-----------CCC---HHHHHHHHHCCCCEEEE
Confidence 55677777777642 122 45788999999999999
No 96
>PRK06904 replicative DNA helicase; Validated
Probab=29.72 E-value=56 Score=29.81 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=32.3
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHH--HHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVA--NAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~--nav~dg~d~imL 49 (157)
..|++.+.|||+.+|+=-.-.+ ..+|. .+|+- .++...||.||+
T Consensus 368 ~lAkel~ipVi~lsQLnR~~e~r~~krP~---lsDLreSG~IEqdAD~v~~ 415 (472)
T PRK06904 368 ALAKELKVPVVALSQLNRTLENRGDKRPV---NSDLRESGSIEQDADLIMF 415 (472)
T ss_pred HHHHHhCCeEEEEEecCchhhccCCCCCc---hHHHhhcCccccCCcEEEE
Confidence 3588999999999998544332 34555 55664 478899999988
No 97
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=29.39 E-value=64 Score=29.05 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=60.4
Q ss_pred HHHhcCCcEEEee--------hhh-HHhhh---CCCCCchhhhHHHHHHhhC----cceeeecCcccCC-----------
Q psy257 4 KCNKVGKPVICAT--------QML-ESMIK---KPRATRAEISDVANAVLDG----ADCVMLSGETAKG----------- 56 (157)
Q Consensus 4 ~c~~~~kPvi~at--------q~L-esM~~---~~~ptRaEvsDv~nav~dg----~d~imLs~ETa~G----------- 56 (157)
.|.++||+|.+|. ..+ +--.+ ...|--+|-+-+..++..| ..-+.|| |.|
T Consensus 110 ~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~PVDSEh~ai~q~l~~~~~~~i~~iilT---ASGGpFr~~~~~~l 186 (385)
T PRK05447 110 AAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILPVDSEHSAIFQCLPGEKQEGVEKIILT---ASGGPFRDWPLEEL 186 (385)
T ss_pred HHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEEECHHHHHHHHHhcCCCccccceEEEe---cCCCcccCCCHHHH
Confidence 5778999999854 233 22222 3678899999999999887 7888993 333
Q ss_pred ------------------CChHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhccCCCCCCchhhhhhh
Q psy257 57 ------------------DYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLSY 105 (157)
Q Consensus 57 ------------------~~p~~~v~~~~~i~~~~e~~~~~~~~~~~l~~~~~~~~~~e~i~~~~a~ 105 (157)
++.++.-.+|++-++..|.. ++|+--.+.+.--+.|++|..+.+.
T Consensus 187 ~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IEA~----~Lf~~~~~~I~vvIHpqSivHsmVe 249 (385)
T PRK05447 187 ANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIEAH----WLFGLPYEQIEVVIHPQSIIHSMVE 249 (385)
T ss_pred hcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHhHH----HHcCCChhhEEEEECCcCceeEEEE
Confidence 33456667888888888843 4454222333334555555555443
No 98
>PLN02334 ribulose-phosphate 3-epimerase
Probab=29.39 E-value=1.9e+02 Score=23.23 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=26.1
Q ss_pred HHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHH
Q psy257 35 DVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 73 (157)
Q Consensus 35 Dv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~ 73 (157)
++......|+|++...+-=-.-+.|.++++.+.+.++++
T Consensus 187 ~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 187 TIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEKA 225 (229)
T ss_pred HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHh
Confidence 555556669999988654333356888888777655543
No 99
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=29.30 E-value=61 Score=21.24 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=29.8
Q ss_pred ehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHH
Q psy257 16 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 74 (157)
Q Consensus 16 tq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e 74 (157)
.++|+...++...|+.|+..+.+.+++|-=. |.+.-.++.-+...-|
T Consensus 3 ~~~l~~l~~g~~Ls~~e~~~~~~~i~~g~~s------------~~qiaAfL~al~~kge 49 (66)
T PF02885_consen 3 KEILKKLRDGEDLSREEAKAAFDAILDGEVS------------DAQIAAFLMALRMKGE 49 (66)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHHHTTSS-------------HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHhCc
Confidence 3678888999999999999999999876311 6666666655554444
No 100
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=29.29 E-value=1.3e+02 Score=27.71 Aligned_cols=20 Identities=45% Similarity=0.539 Sum_probs=17.6
Q ss_pred hhhhHHHHHHhhCcceee-ec
Q psy257 31 AEISDVANAVLDGADCVM-LS 50 (157)
Q Consensus 31 aEvsDv~nav~dg~d~im-Ls 50 (157)
.|+..+--|+.-|||+|| ||
T Consensus 78 ~E~~K~~~A~~~GADtiMDLS 98 (431)
T PRK13352 78 EELEKAKVAVKYGADTIMDLS 98 (431)
T ss_pred HHHHHHHHHHHcCCCeEeecc
Confidence 578888889999999999 75
No 101
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=28.90 E-value=3.7e+02 Score=23.01 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=23.1
Q ss_pred hcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeecCcccCC
Q psy257 7 KVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKG 56 (157)
Q Consensus 7 ~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs~ETa~G 56 (157)
..+.|||...-+.. ..|+..++. .|+|+||+ |.-+.|
T Consensus 192 ~~~iPVI~nGgI~s------------~~da~~~l~~~gadgVmi-GR~~l~ 229 (321)
T PRK10415 192 KVSIPVIANGDITD------------PLKARAVLDYTGADALMI-GRAAQG 229 (321)
T ss_pred hcCCcEEEeCCCCC------------HHHHHHHHhccCCCEEEE-ChHhhc
Confidence 45788887655433 235555554 59999999 444444
No 102
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=28.80 E-value=1.1e+02 Score=24.87 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeecCcccCCCChHHH
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVEC 62 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs~ETa~G~~p~~~ 62 (157)
++..+.|||.+.-+.+ ..|+..+.. .|+|++|...==-.|.++.+-
T Consensus 193 ~~~~~ipvia~GGv~s------------~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 193 SDAVNVPVIASGGAGN------------LEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred HhhCCCCEEEECCCCC------------HHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 3445677777765443 457777775 599999995321256666554
No 103
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=28.20 E-value=1.1e+02 Score=25.91 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=25.0
Q ss_pred HHHhhCcceeeecCcccCCCChH------HHHHHHHHHHHHHHH
Q psy257 38 NAVLDGADCVMLSGETAKGDYPV------ECVRAMHNTCKEAEA 75 (157)
Q Consensus 38 nav~dg~d~imLs~ETa~G~~p~------~~v~~~~~i~~~~e~ 75 (157)
--...|+|+||+.+ .|..|. +++..|..|+.+.-.
T Consensus 36 ~l~~~GvD~viveN---~~d~P~~~~~~p~tva~m~~i~~~v~~ 76 (257)
T TIGR00259 36 ALEEGGVDAVMFEN---FFDAPFLKEVDPETVAAMAVIAGQLKS 76 (257)
T ss_pred HHHhCCCCEEEEec---CCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 33456999999964 455444 779999999877543
No 104
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=28.11 E-value=57 Score=27.20 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=27.4
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+..|+..|.++++ |+...+-..+..++..|+++||+.
T Consensus 55 ~~a~~~~g~~~~V------------Rvp~~~~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 55 LMALKGSASAPVV------------RPPWNEPVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred HHHHhhcCCCcEE------------ECCCCCHHHHHHHhcCCCCEEEec
Confidence 5566777777776 444445677888888999999993
No 105
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=28.08 E-value=1.8e+02 Score=23.84 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=29.5
Q ss_pred hHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 34 SDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
..+..++..|++++.....--.-..|.++++.+..+++.
T Consensus 211 ~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~i~~ 249 (258)
T TIGR01949 211 QMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKIVHE 249 (258)
T ss_pred HHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHHHhC
Confidence 356666778999998877666677788888888777654
No 106
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=27.77 E-value=69 Score=27.43 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=24.8
Q ss_pred HhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 6 NKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 6 ~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
+..+.|||.+.-+-+ -.|++.+...|+|+|++
T Consensus 158 ~~~~iPviaaGGI~~------------~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 158 DAVSIPVIAAGGIAD------------GRGMAAAFALGAEAVQM 189 (307)
T ss_pred HHhCCCEEEECCCCC------------HHHHHHHHHcCCCEeec
Confidence 344688888876544 45889999999999998
No 107
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=27.73 E-value=73 Score=27.82 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=29.8
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-CcceeeecCcccCCC
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLSGETAKGD 57 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~d~imLs~ETa~G~ 57 (157)
.+||++ +..|...++.|+|.++.+ |+||+.+++=|-.|.
T Consensus 161 ~~Pv~v----------Kl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~ 200 (310)
T COG0167 161 KVPVFV----------KLAPNITDIDEIAKAAEEAGADGLIAINTTKSGM 200 (310)
T ss_pred cCceEE----------EeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccc
Confidence 478886 357799999999988766 599999987555343
No 108
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=27.72 E-value=1.2e+02 Score=29.59 Aligned_cols=58 Identities=24% Similarity=0.205 Sum_probs=40.0
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhh
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAI 77 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~ 77 (157)
+++.|+++|||+.++.++... ..+ .+.-.+..|++.+..+. +.+-.++..+.++|+.+
T Consensus 734 vi~aa~~~g~~vgicge~a~~--------~p~--~~~~l~~~G~~~ls~~~---------d~~~~~k~~i~~~~~~~ 791 (795)
T PRK06464 734 AIKAAKKAGKYVGICGQAPSD--------HPD--FAEWLVEEGIDSISLNP---------DAVVDTWLAVAEVEKKI 791 (795)
T ss_pred HHHHHHHcCCEEEEcCCCCCC--------cHH--HHHHHHHCCCCEEEEcc---------hhHHHHHHHHHHhHHHh
Confidence 478899999999998775421 012 34445667999999864 46666777777777643
No 109
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=27.62 E-value=1.9e+02 Score=28.11 Aligned_cols=68 Identities=19% Similarity=0.423 Sum_probs=51.8
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhh
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAI 77 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~ 77 (157)
|+..|++.|.|||.... .-|..-|--|-.++.++.+.+..|.+++.|= .|..+.+..-.+++..+...
T Consensus 316 ileea~k~g~~vIat~~--k~~~gLpD~Td~~~d~iV~~L~sg~~g~~ll-------d~~K~gevav~vA~~v~~~R 383 (772)
T COG1152 316 ILEEASKLGIPVIATNE--KGMLGLPDVTDEDVDEIVESLVSGEPGVVLL-------DPLKAGEVAVEVAEAVEPIR 383 (772)
T ss_pred HHHHHhccCCceEechh--HHhcCCCccccCCHHHHHHHHhcCCCceeec-------chHHhhHHHHHHHHHHHHhh
Confidence 46789999999995433 2355667778889999999999998777662 47788887777777777654
No 110
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.34 E-value=3.1e+02 Score=21.76 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=41.0
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-CcceeeecCcccCCCChHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLSGETAKGDYPVECVRAMHNTC 70 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~d~imLs~ETa~G~~p~~~v~~~~~i~ 70 (157)
+..+++.|..|.+... ...+.+..++.+++..+.+ |+|.|.|. .|.=.-.|.+.-+.+..+.
T Consensus 114 v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYLA-DTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-S-HHHHHHHHHHHH
T ss_pred HHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEee-CccCCcCHHHHHHHHHHHH
Confidence 5678888988866543 3346677888888888765 99999994 5666666766555554443
No 111
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=27.22 E-value=43 Score=29.78 Aligned_cols=18 Identities=56% Similarity=0.591 Sum_probs=16.4
Q ss_pred hhHHHHHHhhCcceeeec
Q psy257 33 ISDVANAVLDGADCVMLS 50 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs 50 (157)
-.||+.|+..|||++|+-
T Consensus 224 ~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 224 PGDVAKAFGAGADFVMLG 241 (343)
T ss_pred hhHHHHHHHcCCCEEEEC
Confidence 479999999999999994
No 112
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.18 E-value=89 Score=27.53 Aligned_cols=47 Identities=21% Similarity=0.185 Sum_probs=32.0
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
+|+.|.++||-++++.+.+=.. ...++. ...+..++..|+|+|.++.
T Consensus 54 ~i~~ah~~gkk~~V~~N~~~~~--~~~~~~--~~~l~~l~e~GvDaviv~D 100 (347)
T COG0826 54 AVELAHSAGKKVYVAVNTLLHN--DELETL--ERYLDRLVELGVDAVIVAD 100 (347)
T ss_pred HHHHHHHcCCeEEEEecccccc--chhhHH--HHHHHHHHHcCCCEEEEcC
Confidence 3678999999999997755321 111211 3456677788999999963
No 113
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=27.12 E-value=60 Score=27.22 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=30.2
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeec
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLS 50 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs 50 (157)
+..+-+.||||++.|-|.- |-.|+-.++..+. .|.+-++|.
T Consensus 125 L~~~a~~gkPVilk~G~~~--------t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 125 LKEVGKQGKPVLLKRGMGN--------TIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred HHHHhcCCCcEEEeCCCCC--------CHHHHHHHHHHHHHcCCCcEEEE
Confidence 5677788999999988653 4457777777776 477667774
No 114
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=27.08 E-value=2e+02 Score=23.42 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.0
Q ss_pred hHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 34 SDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
.|+.....-|+|||-..+.=-.-+.|.++++-+.+++.
T Consensus 176 ~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 176 ASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred HHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHh
Confidence 46666777799999987776666788888887776654
No 115
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.06 E-value=71 Score=22.59 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=23.6
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcc
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGAD 45 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d 45 (157)
|+..++.|||+++-|+ |+.-||.|+.+--.. .|.+
T Consensus 23 l~~L~~~g~~~~~lTN-------ns~~s~~~~~~~L~~--~Gi~ 57 (101)
T PF13344_consen 23 LDALRERGKPVVFLTN-------NSSRSREEYAKKLKK--LGIP 57 (101)
T ss_dssp HHHHHHTTSEEEEEES--------SSS-HHHHHHHHHH--TTTT
T ss_pred HHHHHHcCCCEEEEeC-------CCCCCHHHHHHHHHh--cCcC
Confidence 5677888999999875 677777777766544 3544
No 116
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=26.77 E-value=52 Score=28.99 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.3
Q ss_pred CCCCCchhhhHHHHHH
Q psy257 25 KPRATRAEISDVANAV 40 (157)
Q Consensus 25 ~~~ptRaEvsDv~nav 40 (157)
-+.|||+||.+++.-+
T Consensus 283 LnlPTRsElDe~~krL 298 (320)
T TIGR01834 283 LNLPTRSELDEAHQRI 298 (320)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4899999999988654
No 117
>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []. The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....
Probab=26.52 E-value=1e+02 Score=23.98 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=33.0
Q ss_pred hHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcc
Q psy257 3 AKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 53 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ET 53 (157)
..|++.|.|++ +| |---++.|..-...++.....+.+|.++-.|+-
T Consensus 112 ~l~~~~g~Pl~-~T----SAN~sg~~~~~~~~~i~~~~~~~vd~iv~~~~~ 157 (179)
T PF01300_consen 112 ELLEALGGPLI-ST----SANLSGEPPATDFEEIIERFGDKVDLIVDGGEI 157 (179)
T ss_dssp HHHHHHTS-EE-EE----ESSSTTSSCTTSHHHHHHHHTTTSSEEEECCHH
T ss_pred HHHHhcCCceE-ec----ccccccCCCCCCHHHHHHHhccCceEEEECCCC
Confidence 56888999955 44 334455666667889988899999999887743
No 118
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.36 E-value=78 Score=28.10 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=23.2
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
++.+++.++|||. .+ ..|. .|+-.++..|+|+||..
T Consensus 180 ~~~ik~~~ipVIa-G~---------V~t~---e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 180 KEFIYELDVPVIV-GG---------CVTY---TTALHLMRTGAAGVLVG 215 (368)
T ss_pred HHHHHHCCCCEEE-eC---------CCCH---HHHHHHHHcCCCEEEEC
Confidence 3455667777765 22 3443 35566666799999995
No 119
>PRK08227 autoinducer 2 aldolase; Validated
Probab=26.23 E-value=1.2e+02 Score=25.88 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=41.5
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCC-ChHHHHHHHHHHHHHHHHh
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGD-YPVECVRAMHNTCKEAEAA 76 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~-~p~~~v~~~~~i~~~~e~~ 76 (157)
.++|.|+--.==.++. ...+...=+++|-.|++.|||||..+- ..|. +--+.++.+.+++++++.+
T Consensus 73 ~~~~lil~ls~~t~~~-~~~~~~~l~~sVeeAvrlGAdAV~~~v--~~Gs~~E~~~l~~l~~v~~ea~~~ 139 (264)
T PRK08227 73 TNKPVVLRASGGNSIL-KELSNEAVAVDMEDAVRLNACAVAAQV--FIGSEYEHQSIKNIIQLVDAGLRY 139 (264)
T ss_pred CCCcEEEEEcCCCCCC-CCCCcccceecHHHHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHh
Confidence 3567666422111222 123456678899999999999998853 5553 3345666677777777765
No 120
>PRK12608 transcription termination factor Rho; Provisional
Probab=26.13 E-value=93 Score=28.00 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=38.1
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHH
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 74 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e 74 (157)
.....||.|++ ++|| ++-.|.|-. .....|||+..|.||..+...+.++.++|=
T Consensus 214 ~f~~~GkdVVL---vlDs-----------ltr~A~A~r---ei~~~~G~~~s~G~~~s~~~~~~rl~~~A~ 267 (380)
T PRK12608 214 RLVEQGKDVVI---LLDS-----------LTRLARAYN---NEVESSGRTLSGGVDARALQRPKRLFGAAR 267 (380)
T ss_pred HHHHcCCCEEE---EEeC-----------cHHHHHHHH---hhhcccCCCCCCCcChHHHhhhHHHHHhcC
Confidence 34556777777 5554 444555543 233559999999999999999999888754
No 121
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=25.91 E-value=3e+02 Score=22.91 Aligned_cols=42 Identities=17% Similarity=-0.071 Sum_probs=27.0
Q ss_pred hhhHHH-HHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHH
Q psy257 32 EISDVA-NAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 73 (157)
Q Consensus 32 EvsDv~-nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~ 73 (157)
|.-+.+ .|...|+|++|+..---...-+-+.+++...|++..
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 84 ESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444443 567789999998654333333467777777777765
No 122
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.84 E-value=95 Score=24.58 Aligned_cols=18 Identities=33% Similarity=0.315 Sum_probs=14.9
Q ss_pred hhHHHHHHhhCcceeeec
Q psy257 33 ISDVANAVLDGADCVMLS 50 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs 50 (157)
..|+..++..|+|+|++.
T Consensus 168 ~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 168 GRGIAAALALGADGVQMG 185 (236)
T ss_pred HHHHHHHHHcCCcEEEEc
Confidence 357888888999999994
No 123
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=25.74 E-value=97 Score=24.55 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=25.7
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCCh
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYP 59 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p 59 (157)
++....|||.+.-+ -+ ..|+..+..-|+|++|+..-=-.|+++
T Consensus 186 ~~~~~ipvi~~GGi---------~~---~~di~~~~~~Ga~gv~vg~~~~~~~~~ 228 (234)
T cd04732 186 AAATGIPVIASGGV---------SS---LDDIKALKELGVAGVIVGKALYEGKIT 228 (234)
T ss_pred HHhcCCCEEEecCC---------CC---HHHHHHHHHCCCCEEEEeHHHHcCCCC
Confidence 34457788776553 33 345666666699999995433334333
No 124
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=25.52 E-value=22 Score=27.22 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=14.6
Q ss_pred hCcceeeecCcccCCCCh
Q psy257 42 DGADCVMLSGETAKGDYP 59 (157)
Q Consensus 42 dg~d~imLs~ETa~G~~p 59 (157)
...||++.|.||..|..-
T Consensus 88 ~~~d~lVVS~ET~~~~~~ 105 (143)
T cd02164 88 PDLEAIVVSPETYPGALK 105 (143)
T ss_pred CCCCEEEEcHHHhhhHHH
Confidence 358999999999998543
No 125
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=25.51 E-value=1.4e+02 Score=24.91 Aligned_cols=52 Identities=33% Similarity=0.420 Sum_probs=38.6
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCccee--eecCcccCCCChHHHHHHHHHHH
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCV--MLSGETAKGDYPVECVRAMHNTC 70 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~i--mLs~ETa~G~~p~~~v~~~~~i~ 70 (157)
++||+|+- +|-+.+.+|| |++.++ |.... .+-..+|-|+.+++.++.+-.+.
T Consensus 175 ~~~p~i~i-----~MG~~G~~SR-----v~~~~~-GS~~tya~~~~~sAPGQi~v~~l~~~~~~l 228 (231)
T COG0710 175 AEKPVITI-----SMGKTGKISR-----VAGPVF-GSPITYASLDKPSAPGQISVDELRKILTLL 228 (231)
T ss_pred cCCCEEEE-----ecCCCCchhh-----hhHhhh-CCceeEeecCCCCCCCCCCHHHHHHHHHHh
Confidence 79999975 8999999998 666665 33332 34567899999998888776554
No 126
>PHA02542 41 41 helicase; Provisional
Probab=25.43 E-value=54 Score=29.98 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=34.6
Q ss_pred hHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..|++.+.|||+..|+=-+-.+...|+-+.+-|- .++...||.||+
T Consensus 338 ~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreS-G~IEqdAD~vl~ 383 (473)
T PHA02542 338 GLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAES-AGLPATADFMLA 383 (473)
T ss_pred HHHHHhCCeEEEEEeeCccccccCCCcchhcccc-cchHhhcCEEEE
Confidence 4678899999999998877666655775544442 367889999886
No 127
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=25.41 E-value=95 Score=21.63 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=26.6
Q ss_pred CcEEEeehhhHHhhhCCC-CCchhhhHHHHHHhhC
Q psy257 10 KPVICATQMLESMIKKPR-ATRAEISDVANAVLDG 43 (157)
Q Consensus 10 kPvi~atq~LesM~~~~~-ptRaEvsDv~nav~dg 43 (157)
.-+++.+++.+.|+++.. .+|+|..-++++.++.
T Consensus 26 ~~cF~GselVdWL~~~~~~~~r~eAv~lg~~Ll~~ 60 (81)
T cd04439 26 PKCFLGNEFVSWLLEIGEISKPEEGVNLGQALLEN 60 (81)
T ss_pred CceeEhHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 346788999999997654 4788999899887754
No 128
>PRK05595 replicative DNA helicase; Provisional
Probab=25.26 E-value=61 Score=28.95 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=32.1
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..|++.+.|||+.+|+=-.-.+ +.+|+.+++-|- .++...||.||+
T Consensus 345 ~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~S-g~Ieq~AD~vl~ 392 (444)
T PRK05595 345 ALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRES-GSIEQDADVVMF 392 (444)
T ss_pred HHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhh-cccccCCCEEEE
Confidence 3588999999999998433322 356765444442 467889998888
No 129
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=25.13 E-value=91 Score=27.95 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=0.0
Q ss_pred ChhHHHhc-CCcEEEeehhhHHhhhCCCCCchhhhHHHH-HHhhCcceeeecC
Q psy257 1 MIAKCNKV-GKPVICATQMLESMIKKPRATRAEISDVAN-AVLDGADCVMLSG 51 (157)
Q Consensus 1 ii~~c~~~-~kPvi~atq~LesM~~~~~ptRaEvsDv~n-av~dg~d~imLs~ 51 (157)
+++.+++. .+||++ +..|--.++.+++. +...|+|||.|.+
T Consensus 173 i~~~Vk~~~~iPv~v----------KLsPn~t~i~~ia~aa~~~Gadgi~liN 215 (385)
T PLN02495 173 VCGWINAKATVPVWA----------KMTPNITDITQPARVALKSGCEGVAAIN 215 (385)
T ss_pred HHHHHHHhhcCceEE----------EeCCChhhHHHHHHHHHHhCCCEEEEec
No 130
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.08 E-value=2e+02 Score=22.08 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=21.6
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++.|++.|++++++ .|+-....++..+...|+|.+.+
T Consensus 96 i~~~~~~g~~~~v~-----------~~~~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 96 VKAAKKYGKEVQVD-----------LIGVEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred HHHHHHcCCeEEEE-----------EeCCCCHHHHHHHHHCCCCEEEE
Confidence 44556666666643 12222234555677779999887
No 131
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=24.86 E-value=1.5e+02 Score=23.92 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=28.0
Q ss_pred hcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeecCcccCCCChHHH
Q psy257 7 KVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVEC 62 (157)
Q Consensus 7 ~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs~ETa~G~~p~~~ 62 (157)
..+.|||.+.-+-. ..|+..+.. .|+|++|+..-=-.|.+..+-
T Consensus 191 ~~~~pvia~GGi~~------------~~di~~~l~~~g~dgv~vg~al~~~~~~~~~ 235 (243)
T cd04731 191 AVNIPVIASGGAGK------------PEHFVEAFEEGGADAALAASIFHFGEYTIAE 235 (243)
T ss_pred hCCCCEEEeCCCCC------------HHHHHHHHHhCCCCEEEEeHHHHcCCCCHHH
Confidence 44778777765432 236666665 499999996544466666543
No 132
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=24.73 E-value=2e+02 Score=22.46 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=14.7
Q ss_pred hhHHHHHHhhCcceeeec
Q psy257 33 ISDVANAVLDGADCVMLS 50 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs 50 (157)
.+++..|...|+|.+.+-
T Consensus 107 ~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 107 PTEIMQALELGADIVKLF 124 (190)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 456778888999999993
No 133
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=24.58 E-value=1.2e+02 Score=19.79 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=28.3
Q ss_pred CcEEEeehhhHHhhhCC---CCCchhhhHHHHHHhh
Q psy257 10 KPVICATQMLESMIKKP---RATRAEISDVANAVLD 42 (157)
Q Consensus 10 kPvi~atq~LesM~~~~---~ptRaEvsDv~nav~d 42 (157)
+-++++.++.+.|.++. ..+|.|...+++..++
T Consensus 15 ~~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~ 50 (74)
T PF00610_consen 15 PNCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELLD 50 (74)
T ss_dssp CCEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHH
T ss_pred CCEeEhHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 56889999999999743 8999999999999874
No 134
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=24.26 E-value=78 Score=26.25 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=14.6
Q ss_pred hHHHHHHhhCcceeee
Q psy257 34 SDVANAVLDGADCVML 49 (157)
Q Consensus 34 sDv~nav~dg~d~imL 49 (157)
.|+..++..|+||||+
T Consensus 75 ~~i~~~Ld~Ga~gIiv 90 (249)
T TIGR02311 75 VLIKQLLDIGAQTLLV 90 (249)
T ss_pred HHHHHHhCCCCCEEEe
Confidence 4899999999999999
No 135
>PRK06749 replicative DNA helicase; Provisional
Probab=24.24 E-value=61 Score=29.16 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=33.8
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..|++.+.|||+..|+=-.-.+ +.+|..+.+-|- .++...||-||+
T Consensus 334 ~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~S-G~IEqdAD~vl~ 381 (428)
T PRK06749 334 LLARELNVCVVALSQLSRSVESRQDKRPLLSDLRET-GQIEQDADVIML 381 (428)
T ss_pred HHHHHhCCeEEEEEecCccccccCCCCCchHhhhhc-ccccccCCEEEE
Confidence 3688999999999998766543 346765544443 467888999998
No 136
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=23.79 E-value=1.4e+02 Score=23.16 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=19.7
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
.+-..|+|||+. ++..+..-+.+|..|+...
T Consensus 282 Ea~~~G~PvI~~----------------~~~~~~e~i~~~~~g~~~~ 312 (353)
T cd03811 282 EAMALGTPVVAT----------------DCPGPREILEDGENGLLVP 312 (353)
T ss_pred HHHHhCCCEEEc----------------CCCChHHHhcCCCceEEEC
Confidence 455678888863 2234455567788888773
No 137
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.78 E-value=1.5e+02 Score=25.01 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=31.1
Q ss_pred CcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHH
Q psy257 10 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 74 (157)
Q Consensus 10 kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e 74 (157)
.|+|-..-+.. -.|+...++.|||+||+... ....-| ...++|+++.+
T Consensus 244 ipIig~GGI~s------------~~da~e~l~aGA~~Vqv~ta-~~~~gp----~~~~~i~~~L~ 291 (294)
T cd04741 244 IQIIGVGGVLD------------GRGAFRMRLAGASAVQVGTA-LGKEGP----KVFARIEKELE 291 (294)
T ss_pred CCEEEeCCCCC------------HHHHHHHHHcCCCceeEchh-hhhcCc----hHHHHHHHHHH
Confidence 68877766554 45999999999999999432 232334 33445555544
No 138
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=23.70 E-value=76 Score=18.27 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=11.4
Q ss_pred hHHHHHHhhCcceeee
Q psy257 34 SDVANAVLDGADCVML 49 (157)
Q Consensus 34 sDv~nav~dg~d~imL 49 (157)
.....++..|+|+||-
T Consensus 11 ~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 11 ASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHcCCCEeeC
Confidence 4566777889999984
No 139
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=23.69 E-value=1.1e+02 Score=24.15 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=24.3
Q ss_pred HHHHHhhCcceeeecCccc-CCCChHHHHHHHHHHHHH
Q psy257 36 VANAVLDGADCVMLSGETA-KGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 36 v~nav~dg~d~imLs~ETa-~G~~p~~~v~~~~~i~~~ 72 (157)
+..++..|+|.+++.. .- ..+.|.++++.+.+.+++
T Consensus 178 ~~~~~~aGad~iV~Gr-~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 178 AADAIKAGADYVIVGR-SIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred HHHHHHcCCCEEEECc-ccCCCCCHHHHHHHHHHHHhc
Confidence 6667777999888742 22 234688888888776543
No 140
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.30 E-value=2.7e+02 Score=23.94 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=20.9
Q ss_pred HHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHH
Q psy257 35 DVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTC 70 (157)
Q Consensus 35 Dv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~ 70 (157)
++..|+..|+|.|||. ++..+-++...+.+
T Consensus 208 ea~eA~~~GaD~I~LD------n~~~e~l~~av~~~ 237 (288)
T PRK07428 208 QVQEALEYGADIIMLD------NMPVDLMQQAVQLI 237 (288)
T ss_pred HHHHHHHcCCCEEEEC------CCCHHHHHHHHHHH
Confidence 5666778899999994 66666665554443
No 141
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=23.27 E-value=1.2e+02 Score=19.90 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=27.5
Q ss_pred CcEEEeehhhHHhhhCCC-CCchhhhHHHHHHhh
Q psy257 10 KPVICATQMLESMIKKPR-ATRAEISDVANAVLD 42 (157)
Q Consensus 10 kPvi~atq~LesM~~~~~-ptRaEvsDv~nav~d 42 (157)
+=++++.++.+.|.++.. .+|.|...+++..++
T Consensus 18 ~~~F~G~e~v~wL~~~~~~~~r~eA~~l~~~ll~ 51 (77)
T smart00049 18 PNCFTGSELVDWLMDNLEIIDREEAVHLGQLLLD 51 (77)
T ss_pred cceeEcHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 447888999999998765 899999999998764
No 142
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=23.12 E-value=2.9e+02 Score=22.92 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=27.1
Q ss_pred hhhHHHHH-HhhCcceeeecCcccCCCChHHHHHHHHHHHHHHH
Q psy257 32 EISDVANA-VLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 74 (157)
Q Consensus 32 EvsDv~na-v~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e 74 (157)
|.-+.+.. ..-|+|++|+..=.-....+-+.+++...|++..+
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~ 127 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATD 127 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 44444433 33499999997543333345677788888877654
No 143
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=22.92 E-value=88 Score=23.41 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=29.5
Q ss_pred CCcEEEeehhhHHhhhC-CCCCchhhhHHHHHHhhC
Q psy257 9 GKPVICATQMLESMIKK-PRATRAEISDVANAVLDG 43 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~-~~ptRaEvsDv~nav~dg 43 (157)
..-+++..++.+.++.| ...+|.|..-++++.++.
T Consensus 28 y~~CF~Gse~VDWLv~~~~~i~R~EAv~l~q~Lmd~ 63 (109)
T cd04444 28 YKKTFLGSALVDWLISNSFAASRLEAVTLASMLMEE 63 (109)
T ss_pred ccccccchHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Confidence 34578999999999998 667999999999998753
No 144
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=22.81 E-value=48 Score=28.53 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=27.5
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
+|+.|++.||||-++.+|-. ..+ -+---+..|.|.+-.+.
T Consensus 240 vi~~a~~~g~~vsvCGe~a~---------~p~--~~~~Ll~lGi~~lSv~p 279 (293)
T PF02896_consen 240 VIDAAHKAGKPVSVCGEMAS---------DPE--AIPLLLGLGIRSLSVSP 279 (293)
T ss_dssp HHHHHHHTT-EEEEESGGGG---------SHH--HHHHHHHHT-SEEEE-G
T ss_pred HHHHHhhcCcEEEEecCCCC---------CHH--HHHHHHHcCCCEEEECH
Confidence 47889999999999999654 222 34455678999998853
No 145
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=22.51 E-value=1e+02 Score=27.17 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=26.8
Q ss_pred hHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 3 AKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
+.+...+.|||+=. ++ ...|+..++..|+|+|.+||
T Consensus 219 ~~~~~~~~pvivKg-v~------------~~~da~~~~~~G~~~i~vs~ 254 (356)
T PF01070_consen 219 WIRKQWKLPVIVKG-VL------------SPEDAKRAVDAGVDGIDVSN 254 (356)
T ss_dssp HHHHHCSSEEEEEE-E-------------SHHHHHHHHHTT-SEEEEES
T ss_pred HHhcccCCceEEEe-cc------------cHHHHHHHHhcCCCEEEecC
Confidence 45667889999843 32 24599999999999999994
No 146
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.44 E-value=4e+02 Score=21.94 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=43.4
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
++++++.|..|.+.. ...++-+...+.+++..+. -|+|.|.| ..|.=.-+|.+.-+.+..+-+.
T Consensus 120 i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l-~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 120 VEYAKSHGLDVEFSA------EDATRTDLDFLIEVVEAAIEAGATTINI-PDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHHHHcCCeEEEee------ecCCCCCHHHHHHHHHHHHHcCCCEEEE-CCCCCCCCHHHHHHHHHHHHHh
Confidence 567888887766421 2334456667677776654 49999999 4667777898887777666543
No 147
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.40 E-value=4.1e+02 Score=22.10 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=40.2
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
++.++..|..|.+...-+ ....+-+...+-+++..+. .|+|.|.| ..|.=.-.|.+.-+.+..+.+
T Consensus 125 i~~ak~~G~~v~~~~~~~---~d~~~~~~~~~~~~~~~~~~~g~~~i~l-~DT~G~~~P~~v~~lv~~l~~ 191 (273)
T cd07941 125 VAYLKSHGREVIFDAEHF---FDGYKANPEYALATLKAAAEAGADWLVL-CDTNGGTLPHEIAEIVKEVRE 191 (273)
T ss_pred HHHHHHcCCeEEEeEEec---cccCCCCHHHHHHHHHHHHhCCCCEEEE-ecCCCCCCHHHHHHHHHHHHH
Confidence 578889999887632211 1112223344455555444 49999998 567777788877666655443
No 148
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=21.91 E-value=1.9e+02 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+.|||...-+-. -.||..|+..|||++++.
T Consensus 300 ~~~vi~dGGIr~------------g~Di~KALaLGA~~V~iG 329 (381)
T PRK11197 300 DITILADSGIRN------------GLDVVRMIALGADTVLLG 329 (381)
T ss_pred CCeEEeeCCcCc------------HHHHHHHHHcCcCceeEh
Confidence 467766655433 569999999999999983
No 149
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=21.91 E-value=2.7e+02 Score=24.07 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=31.1
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
+-.+|+|||.. .+..+...|.||..|+++. .+..|-+..+.+.+++.
T Consensus 330 Ama~G~PVIas----------------~vgg~~e~i~~~~~G~l~~----~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 330 AMSFGIPVIAT----------------NVGGTPEIVDNGGNGLLLS----KDPTPNELVSSLSKFID 376 (407)
T ss_pred HHHcCCCEEeC----------------CCCCcHHHhcCCCcEEEeC----CCCCHHHHHHHHHHHHh
Confidence 44567777652 2445566778888898884 34456677777777765
No 150
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=21.85 E-value=4.7e+02 Score=22.95 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=47.4
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeecCcccCCCChHHHHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCKEA 73 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~ 73 (157)
++.+++.|..|.+.. ....+-+...+-+++.++. .|+|.|.|. .|.=.-.|.+.-+.+..+.+..
T Consensus 122 v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 122 VEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGILDPFTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCCCHHHHHHHHHHHHHhc
Confidence 567888898887752 2445566677777776654 499999994 6787888988888877776543
No 151
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=21.79 E-value=97 Score=27.57 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=15.7
Q ss_pred hhHHHHHHhhCcceeee
Q psy257 33 ISDVANAVLDGADCVML 49 (157)
Q Consensus 33 vsDv~nav~dg~d~imL 49 (157)
-.||..|+..|||++|+
T Consensus 301 g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 301 GSDIVKALALGANAVLL 317 (361)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 45999999999999999
No 152
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=21.63 E-value=3e+02 Score=23.43 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=32.7
Q ss_pred ChhHHHhcCCcEEEee--------------hhhHHhhh-CCCCC------chhhhHHHHHHhhCcceeeecCc
Q psy257 1 MIAKCNKVGKPVICAT--------------QMLESMIK-KPRAT------RAEISDVANAVLDGADCVMLSGE 52 (157)
Q Consensus 1 ii~~c~~~~kPvi~at--------------q~LesM~~-~~~pt------RaEvsDv~nav~dg~d~imLs~E 52 (157)
+|+.|.+.+.|||+.. .++..+.+ ...|= =.....+..|+..|++.||+=+=
T Consensus 34 vi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s 106 (281)
T PRK06806 34 AIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGS 106 (281)
T ss_pred HHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCC
Confidence 4677888888888865 12222222 22331 01356788899999999999543
No 153
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=21.56 E-value=2.7e+02 Score=24.18 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=27.9
Q ss_pred hHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 34 SDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
.|+..+...|+|+|+..+.=-.-..|.+.++.+...+..
T Consensus 209 ena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 209 ADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred HHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 466777778999999965433346788888877766554
No 154
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=21.55 E-value=3.2e+02 Score=19.71 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=29.6
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHH
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 73 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~ 73 (157)
.|-..|+|||+. ........+.+|..|+..... .+-+.++.+.+++..-
T Consensus 111 Ea~~~g~pvI~~----------------~~~~~~e~~~~~~~g~~~~~~-----~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 111 EAMACGCPVIAS----------------DIGGNNEIINDGVNGFLFDPN-----DIEELADAIEKLLNDP 159 (172)
T ss_dssp HHHHTT-EEEEE----------------SSTHHHHHSGTTTSEEEESTT-----SHHHHHHHHHHHHHHH
T ss_pred cccccccceeec----------------cccCCceeeccccceEEeCCC-----CHHHHHHHHHHHHCCH
Confidence 466778888864 234455566778889888543 4555555555555443
No 155
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=21.32 E-value=23 Score=30.06 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=28.6
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAV 40 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav 40 (157)
+++.|++.++|+|.+.-. -...-||+-++.|+....
T Consensus 138 L~~~c~~~~ip~I~~gGa----g~k~dp~~~~~~di~~t~ 173 (268)
T PRK15116 138 LIAYCRRNKIPLVTTGGA----GGQIDPTQIQVVDLAKTI 173 (268)
T ss_pred HHHHHHHcCCCEEEECCc----ccCCCCCeEEEEeeeccc
Confidence 357899999999987433 356689999999998774
No 156
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=21.26 E-value=1.3e+02 Score=25.71 Aligned_cols=56 Identities=30% Similarity=0.394 Sum_probs=38.0
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
..++..||||=.-+ +.| ||.+.|...|+|+|++-.--+.-+.|+.--+-|..-.+.
T Consensus 178 ie~a~VPviVDAGi-------G~p-----SdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~A 233 (262)
T COG2022 178 IEEADVPVIVDAGI-------GTP-----SDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEA 233 (262)
T ss_pred HHhCCCCEEEeCCC-------CCh-----hHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHH
Confidence 34557788774321 233 599999999999999976666677887655555544433
No 157
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.16 E-value=53 Score=30.28 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=13.5
Q ss_pred ChhHHHhcCCcEEEe
Q psy257 1 MIAKCNKVGKPVICA 15 (157)
Q Consensus 1 ii~~c~~~~kPvi~a 15 (157)
||..|+++|+||++=
T Consensus 163 ~I~~ar~~~~pVLvD 177 (467)
T COG2870 163 MIDLAREAGIPVLVD 177 (467)
T ss_pred HHHHHHHcCCcEEEC
Confidence 689999999999983
No 158
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=21.09 E-value=2.4e+02 Score=22.33 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=21.3
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
++||+.+.-+ -| ..|+..+...|+|++++.
T Consensus 173 ~iPvia~GGI---------~t---~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 173 GCPVIAEGRI---------NT---PEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCCEEEECCC---------CC---HHHHHHHHHCCCCEEEEc
Confidence 6788876543 22 246777778899999995
No 159
>PRK15452 putative protease; Provisional
Probab=21.00 E-value=1.9e+02 Score=26.34 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=29.5
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHH----HhhCcceeeecC
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANA----VLDGADCVMLSG 51 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~na----v~dg~d~imLs~ 51 (157)
++.|++.|+.|++++..+ |...|+.++..- ..-|+|+|+.+.
T Consensus 52 v~~ah~~g~kvyvt~n~i--------~~e~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 52 INEAHALGKKFYVVVNIA--------PHNAKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred HHHHHHcCCEEEEEecCc--------CCHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 578999999999998743 444555444433 345899999963
No 160
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=21.00 E-value=2.3e+02 Score=24.77 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=0.0
Q ss_pred hHHHhcCCcEE--EeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHH
Q psy257 3 AKCNKVGKPVI--CATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEA 75 (157)
Q Consensus 3 ~~c~~~~kPvi--~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~ 75 (157)
..++....||| ....+-. -.|+..+...|+|+|+..+.=-....|.+.++.+.........
T Consensus 197 ei~~~~~iPVV~~AeGGI~T------------Pedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~~ 259 (293)
T PRK04180 197 EVAELGRLPVVNFAAGGIAT------------PADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYDD 259 (293)
T ss_pred HHHHhCCCCEEEEEeCCCCC------------HHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcCC
No 161
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=20.96 E-value=90 Score=27.45 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=31.5
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHH--HHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVA--NAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~--nav~dg~d~imL 49 (157)
..|++.+.|||+..|+=..-.+ ..+|. .+|+- .++...||.||+
T Consensus 338 ~lAke~~i~Vi~lsQlnr~~~~r~~krp~---lsdlr~Sg~Ieq~AD~v~~ 385 (421)
T TIGR03600 338 ALAKELDVPVVLLAQLNRGSEKRTDKRPI---MSDLRDSGAIEQDADVIGL 385 (421)
T ss_pred HHHHHhCCcEEEecccCcchhhcCCCCCC---hHHHhhcCCccccCcEEEE
Confidence 4678899999999998443322 34566 45554 467889999988
No 162
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=20.89 E-value=1e+02 Score=27.21 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=29.4
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeec
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLS 50 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs 50 (157)
+..+-+.|||||+.|-|. +|-.|+-.+++.+. .|-+-|+|.
T Consensus 218 L~~~a~~gkPVilk~G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 218 LKAAGRVNKPVLLKRGLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred HHHHHccCCcEEEeCCCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 556677899999998763 34457777777776 466667774
No 163
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=20.85 E-value=1.8e+02 Score=24.97 Aligned_cols=40 Identities=33% Similarity=0.385 Sum_probs=28.1
Q ss_pred hHHHHHHhhCcceeeecCcccCCCCh------HHHHHHHHHHHHHHHHh
Q psy257 34 SDVANAVLDGADCVMLSGETAKGDYP------VECVRAMHNTCKEAEAA 76 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~G~~p------~~~v~~~~~i~~~~e~~ 76 (157)
.|..--...|+|+||+. +.|..| -+.+..|..|..+.-..
T Consensus 38 ~dA~~leegG~DavivE---N~gD~Pf~k~v~~~tvaaMa~iv~~v~r~ 83 (263)
T COG0434 38 RDAAALEEGGVDAVIVE---NYGDAPFLKDVGPETVAAMAVIVREVVRE 83 (263)
T ss_pred HHHHHHHhCCCcEEEEe---ccCCCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 34444556799999996 567666 47888888887775443
No 164
>PRK05849 hypothetical protein; Provisional
Probab=20.80 E-value=48 Score=32.50 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=33.0
Q ss_pred ChhHHHhcCCc--------EEEeehhhHHhhhCCCCCchhhhHHHHHH
Q psy257 1 MIAKCNKVGKP--------VICATQMLESMIKKPRATRAEISDVANAV 40 (157)
Q Consensus 1 ii~~c~~~~kP--------vi~atq~LesM~~~~~ptRaEvsDv~nav 40 (157)
+|..|+.+|.+ -++|++||.|.+..+.-|..|..+.-|.+
T Consensus 440 lle~~~~~Gtl~Fa~~AR~~Fva~~~l~sl~~~g~~s~~~~~~f~~s~ 487 (783)
T PRK05849 440 LLEDCKRYGTLPFAGIARAAFVATQLLKSLVEIGALSQEELDAFLNSL 487 (783)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 36789999988 47899999999999999998887665543
No 165
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.69 E-value=62 Score=29.89 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=16.0
Q ss_pred hhHHHHHHhhCcceeee
Q psy257 33 ISDVANAVLDGADCVML 49 (157)
Q Consensus 33 vsDv~nav~dg~d~imL 49 (157)
-.||+.|+..|||++|+
T Consensus 364 ~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 364 DYHMTLALAMGADFIML 380 (502)
T ss_pred hhHHHHHHHcCCCeeee
Confidence 47999999999999999
No 166
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.67 E-value=2.5e+02 Score=23.60 Aligned_cols=46 Identities=9% Similarity=0.191 Sum_probs=36.0
Q ss_pred CCCchhhhH-HHHHHhhCcc-eeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 27 RATRAEISD-VANAVLDGAD-CVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 27 ~ptRaEvsD-v~nav~dg~d-~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
-|.++|-.+ +-.|+..|+| ++.++..--.|..|..+-+.+...++.
T Consensus 63 Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~ 110 (256)
T PRK03359 63 GGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQK 110 (256)
T ss_pred CCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHH
Confidence 577766544 6678889999 888887755678888888888888776
No 167
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=20.64 E-value=1.1e+02 Score=25.97 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcc
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 53 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ET 53 (157)
+++.|+++|||+.+-.. .-.++...+..|++-+.++.++
T Consensus 202 v~~a~~~~Gk~~G~~~~--------------~~~~a~~~~~~G~~~v~~g~D~ 240 (267)
T PRK10128 202 SIRRIRAAGKAAGFLAV--------------DPDMAQKCLAWGANFVAVGVDT 240 (267)
T ss_pred HHHHHHHcCCeEEEcCC--------------CHHHHHHHHHcCCcEEEEChHH
No 168
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=20.63 E-value=3e+02 Score=23.19 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=19.0
Q ss_pred hHHHHHHhhCcceeeecCcccCCCChHHHHHHHH
Q psy257 34 SDVANAVLDGADCVMLSGETAKGDYPVECVRAMH 67 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~ 67 (157)
.++..|+..|+|.||| |++..+.++...
T Consensus 193 eea~~A~~~gaDyI~l------d~~~~e~l~~~~ 220 (268)
T cd01572 193 EQLKEALEAGADIIML------DNMSPEELREAV 220 (268)
T ss_pred HHHHHHHHcCCCEEEE------CCcCHHHHHHHH
Confidence 3566777889999999 455555444443
No 169
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=20.49 E-value=1.9e+02 Score=23.58 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=30.6
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHH---hhCcceeeecCcccCCCChHHH
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAV---LDGADCVMLSGETAKGDYPVEC 62 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav---~dg~d~imLs~ETa~G~~p~~~ 62 (157)
.++..+.|||.+.-+- + ..|+..+. ..|+|++|+..---.|+++++-
T Consensus 185 i~~~~~ipviasGGi~---------s---~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~ 234 (241)
T PRK14024 185 VCARTDAPVVASGGVS---------S---LDDLRALAELVPLGVEGAIVGKALYAGAFTLPE 234 (241)
T ss_pred HHhhCCCCEEEeCCCC---------C---HHHHHHHhhhccCCccEEEEeHHHHcCCCCHHH
Confidence 3455688999887643 3 34555443 3599999996555566776554
No 170
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.17 E-value=2e+02 Score=24.26 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=33.8
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeee--cCcccCCCChHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVML--SGETAKGDYPVECVRA 65 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imL--s~ETa~G~~p~~~v~~ 65 (157)
++.+-..||||++.|-|.-+ -.|+-+++..+. .|-+-++| .|=....+||.+.+..
T Consensus 127 L~~~a~~gkPV~lk~G~~~s--------~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 127 LKEVGKTKKPILLKRGMSAT--------LEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDL 185 (266)
T ss_pred HHHHhcCCCcEEEeCCCCCC--------HHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHH
Confidence 45566789999998775433 346767666665 35544444 3321345888665443
No 171
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=20.16 E-value=2.7e+02 Score=23.20 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=31.1
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHh
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 76 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~ 76 (157)
.+.|||...-+.. ..|+...+..|||+||+.-- ..- -| .+..++.++.+..
T Consensus 233 ~~ipvi~~GGI~~------------~~da~~~l~aGAd~V~igr~-ll~-~P----~~~~~i~~~l~~~ 283 (301)
T PRK07259 233 VDIPIIGMGGISS------------AEDAIEFIMAGASAVQVGTA-NFY-DP----YAFPKIIEGLEAY 283 (301)
T ss_pred CCCCEEEECCCCC------------HHHHHHHHHcCCCceeEcHH-Hhc-Cc----HHHHHHHHHHHHH
Confidence 3678777655432 45888888999999999432 121 34 4455555555443
No 172
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=20.10 E-value=1.3e+02 Score=26.35 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
.+...++|||+-+= + + ..|+..+...|+|+|.+|+
T Consensus 208 l~~~~~~PvivKgv-~---------~---~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 208 LRKHTKLPIVLKGV-Q---------T---VEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred HHHhcCCcEEEEcC-C---------C---HHHHHHHHHcCCCEEEEEC
Confidence 34456789888622 1 1 5688888999999999997
No 173
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=20.07 E-value=3e+02 Score=24.47 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=35.4
Q ss_pred ChhHHHhcCCcEEEee----------h----hhHHhhhCC--CCC------chhhhHHHHHHhhCcceeeecC
Q psy257 1 MIAKCNKVGKPVICAT----------Q----MLESMIKKP--RAT------RAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 1 ii~~c~~~~kPvi~at----------q----~LesM~~~~--~pt------RaEvsDv~nav~dg~d~imLs~ 51 (157)
+|+.|.+.+-|||+.+ . |+..|.++. .|- =....++-.|+..|.+.||.-|
T Consensus 34 vi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDg 106 (347)
T PRK13399 34 IMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMMDG 106 (347)
T ss_pred HHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEEeC
Confidence 4678899999999876 3 334444332 341 1145678999999999999965
Done!