Query psy257
Match_columns 157
No_of_seqs 148 out of 1039
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:32:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4drs_A Pyruvate kinase; glycol 100.0 7.1E-54 2.4E-58 385.9 6.4 156 1-156 313-481 (526)
2 3khd_A Pyruvate kinase; malari 100.0 2.6E-53 9E-58 381.5 6.1 156 1-156 307-475 (520)
3 3hqn_D Pyruvate kinase, PK; TI 100.0 1E-52 3.5E-57 376.4 5.6 152 1-152 282-446 (499)
4 3gg8_A Pyruvate kinase; malari 100.0 1.4E-52 4.7E-57 376.3 6.2 156 1-156 298-466 (511)
5 3gr4_A Pyruvate kinase isozyme 100.0 5E-52 1.7E-56 375.1 8.5 152 1-152 332-496 (550)
6 1e0t_A Pyruvate kinase, PK; ph 100.0 8.2E-52 2.8E-56 368.6 2.2 153 1-156 263-427 (470)
7 3t05_A Pyruvate kinase, PK; te 100.0 2.7E-51 9.2E-56 374.0 5.0 154 1-156 283-449 (606)
8 2e28_A Pyruvate kinase, PK; al 100.0 7.4E-51 2.5E-55 370.4 5.5 154 1-155 264-429 (587)
9 3qtg_A Pyruvate kinase, PK; TI 100.0 1.3E-50 4.5E-55 359.7 1.9 144 1-155 273-428 (461)
10 1a3w_A Pyruvate kinase; allost 100.0 1.5E-46 5E-51 336.9 6.7 151 1-151 283-446 (500)
11 1izc_A Macrophomate synthase i 94.2 0.011 3.7E-07 50.4 0.8 62 1-77 239-302 (339)
12 3igs_A N-acetylmannosamine-6-p 63.0 11 0.00036 29.8 5.0 36 33-71 193-228 (232)
13 2o55_A Putative glycerophospho 62.2 11 0.00038 29.5 5.0 54 2-71 205-258 (258)
14 2vws_A YFAU, 2-keto-3-deoxy su 60.3 0.2 7E-06 40.6 -5.7 37 1-51 202-238 (267)
15 1wv2_A Thiazole moeity, thiazo 58.4 17 0.00058 30.0 5.5 54 7-72 185-238 (265)
16 3g8r_A Probable spore coat pol 58.3 11 0.00038 32.1 4.5 46 2-59 128-174 (350)
17 3usb_A Inosine-5'-monophosphat 57.9 5.9 0.0002 34.9 2.9 35 4-50 354-388 (511)
18 4fxs_A Inosine-5'-monophosphat 57.5 6.2 0.00021 34.7 2.9 35 4-50 329-363 (496)
19 1zcc_A Glycerophosphodiester p 52.8 36 0.0012 26.4 6.5 47 2-68 187-234 (248)
20 1yad_A Regulatory protein TENI 52.4 27 0.00091 26.4 5.5 51 8-71 163-213 (221)
21 2wqp_A Polysialic acid capsule 51.4 25 0.00087 29.8 5.7 47 2-60 141-188 (349)
22 1mxs_A KDPG aldolase; 2-keto-3 51.2 24 0.00082 27.7 5.2 34 2-49 112-145 (225)
23 1o66_A 3-methyl-2-oxobutanoate 50.4 44 0.0015 27.5 6.8 68 3-71 31-106 (275)
24 3ks6_A Glycerophosphoryl diest 50.3 48 0.0016 25.8 6.9 48 2-69 197-244 (250)
25 2yw3_A 4-hydroxy-2-oxoglutarat 50.1 16 0.00053 28.2 3.9 34 2-49 97-130 (207)
26 1me8_A Inosine-5'-monophosphat 49.8 8 0.00027 33.8 2.4 30 9-50 352-381 (503)
27 1vhc_A Putative KHG/KDPG aldol 49.4 26 0.0009 27.4 5.2 34 2-49 103-136 (224)
28 2c6q_A GMP reductase 2; TIM ba 48.7 11 0.00037 31.6 2.9 35 5-51 219-253 (351)
29 4avf_A Inosine-5'-monophosphat 47.0 9.9 0.00034 33.2 2.5 32 7-50 330-361 (490)
30 1oy0_A Ketopantoate hydroxymet 46.9 38 0.0013 27.9 5.9 68 3-71 48-123 (281)
31 3l12_A Putative glycerophospho 46.1 26 0.0009 28.2 4.8 46 2-67 261-306 (313)
32 1ypf_A GMP reductase; GUAC, pu 45.8 12 0.0004 31.0 2.6 33 6-50 207-239 (336)
33 3ffs_A Inosine-5-monophosphate 43.4 12 0.00041 32.3 2.4 31 7-49 244-274 (400)
34 4af0_A Inosine-5'-monophosphat 43.3 17 0.0006 32.9 3.5 35 4-50 379-413 (556)
35 1vcf_A Isopentenyl-diphosphate 43.1 59 0.002 26.4 6.6 31 9-51 256-286 (332)
36 2v5j_A 2,4-dihydroxyhept-2-ENE 42.7 0.69 2.3E-05 38.1 -5.3 37 1-51 223-259 (287)
37 4fo4_A Inosine 5'-monophosphat 42.0 16 0.00054 31.0 2.9 33 6-50 208-240 (366)
38 2cu0_A Inosine-5'-monophosphat 41.5 17 0.0006 31.4 3.2 35 5-51 324-358 (486)
39 3q58_A N-acetylmannosamine-6-p 40.2 20 0.00069 28.1 3.1 31 33-66 193-223 (229)
40 1wbh_A KHG/KDPG aldolase; lyas 40.1 27 0.00093 27.0 3.8 34 2-49 102-135 (214)
41 3eeg_A 2-isopropylmalate synth 39.2 71 0.0024 26.3 6.5 64 2-72 128-192 (325)
42 3r2g_A Inosine 5'-monophosphat 39.0 19 0.00064 30.6 2.9 18 33-50 211-228 (361)
43 1vli_A Spore coat polysacchari 38.4 28 0.00095 30.0 3.9 47 2-60 151-199 (385)
44 2nv1_A Pyridoxal biosynthesis 38.4 91 0.0031 24.9 6.9 33 35-68 137-169 (305)
45 3khj_A Inosine-5-monophosphate 36.3 25 0.00085 29.6 3.3 34 5-50 203-236 (361)
46 4e38_A Keto-hydroxyglutarate-a 34.7 27 0.00093 27.8 3.1 34 2-49 120-153 (232)
47 3ble_A Citramalate synthase fr 34.3 52 0.0018 27.1 4.9 67 2-72 143-210 (337)
48 1jcn_A Inosine monophosphate d 34.2 28 0.00097 30.1 3.4 35 5-51 354-388 (514)
49 1vrd_A Inosine-5'-monophosphat 33.5 25 0.00085 30.2 2.9 31 7-49 338-368 (494)
50 1eep_A Inosine 5'-monophosphat 33.4 60 0.0021 27.2 5.2 20 33-52 205-224 (404)
51 1xm3_A Thiazole biosynthesis p 33.2 55 0.0019 25.9 4.7 40 34-73 191-230 (264)
52 2htm_A Thiazole biosynthesis p 33.1 54 0.0019 27.0 4.7 40 33-72 190-229 (268)
53 1p0k_A Isopentenyl-diphosphate 31.9 45 0.0015 27.3 4.1 30 9-50 251-280 (349)
54 2ftp_A Hydroxymethylglutaryl-C 31.0 1.5E+02 0.005 23.8 7.0 75 1-75 35-135 (302)
55 1ydn_A Hydroxymethylglutaryl-C 30.4 1.6E+02 0.0054 23.3 7.1 73 2-74 32-130 (295)
56 1ep3_A Dihydroorotate dehydrog 30.4 49 0.0017 26.1 3.9 31 8-50 240-270 (311)
57 2qjg_A Putative aldolase MJ040 29.5 1.3E+02 0.0044 23.2 6.3 37 36-72 223-259 (273)
58 3tdn_A FLR symmetric alpha-bet 28.5 39 0.0013 26.0 3.0 36 4-51 74-109 (247)
59 1ka9_F Imidazole glycerol phos 27.8 41 0.0014 25.7 3.0 34 5-50 71-104 (252)
60 3nvt_A 3-deoxy-D-arabino-heptu 27.3 53 0.0018 28.0 3.8 41 2-50 242-283 (385)
61 1f76_A Dihydroorotate dehydrog 27.3 46 0.0016 27.0 3.3 30 9-50 289-318 (336)
62 3f4w_A Putative hexulose 6 pho 27.2 54 0.0018 24.3 3.5 37 35-71 172-208 (211)
63 1zfj_A Inosine monophosphate d 27.1 38 0.0013 29.0 2.9 32 6-49 333-364 (491)
64 1m3u_A 3-methyl-2-oxobutanoate 26.8 1.6E+02 0.0056 23.8 6.6 68 3-71 31-105 (264)
65 3sr7_A Isopentenyl-diphosphate 26.2 45 0.0015 28.2 3.1 30 9-50 278-307 (365)
66 1ka9_F Imidazole glycerol phos 25.6 88 0.003 23.7 4.6 32 34-65 209-241 (252)
67 1xi3_A Thiamine phosphate pyro 25.0 67 0.0023 23.6 3.7 37 35-71 175-211 (215)
68 1vhn_A Putative flavin oxidore 24.9 31 0.0011 28.0 1.9 30 9-50 183-213 (318)
69 1kbi_A Cytochrome B2, L-LCR; f 24.6 1.7E+02 0.0058 25.6 6.7 33 7-52 341-373 (511)
70 3bh0_A DNAB-like replicative h 24.5 35 0.0012 27.5 2.1 46 3-49 215-262 (315)
71 1yxy_A Putative N-acetylmannos 24.3 61 0.0021 24.5 3.4 44 9-67 186-229 (234)
72 2oog_A Glycerophosphoryl diest 24.3 77 0.0026 25.0 4.1 45 2-66 234-278 (287)
73 1eep_A Inosine 5'-monophosphat 24.3 38 0.0013 28.4 2.4 30 8-49 255-284 (404)
74 2ysr_A DEP domain-containing p 23.7 41 0.0014 23.4 2.1 34 10-43 38-79 (105)
75 2q6t_A DNAB replication FORK h 23.6 49 0.0017 27.9 2.9 46 3-49 347-394 (444)
76 1o4u_A Type II quinolic acid p 23.2 1.8E+02 0.006 23.7 6.1 26 35-66 205-230 (285)
77 1dxe_A 2-dehydro-3-deoxy-galac 22.5 60 0.002 25.5 3.1 38 1-52 202-239 (256)
78 2b7n_A Probable nicotinate-nuc 22.4 2.1E+02 0.0073 22.7 6.4 16 36-51 195-210 (273)
79 1p4c_A L(+)-mandelate dehydrog 22.2 1.1E+02 0.0038 25.5 4.9 18 33-50 290-307 (380)
80 2cw6_A Hydroxymethylglutaryl-C 22.2 2.5E+02 0.0086 22.3 6.9 70 2-72 127-197 (298)
81 3sgz_A Hydroxyacid oxidase 2; 22.1 89 0.003 26.3 4.2 35 6-53 214-248 (352)
82 1thf_D HISF protein; thermophI 21.7 1.1E+02 0.0038 23.1 4.4 32 34-66 208-241 (253)
83 2qr6_A IMP dehydrogenase/GMP r 21.6 80 0.0027 26.2 3.8 35 3-50 205-239 (393)
84 1jub_A Dihydroorotate dehydrog 21.3 69 0.0024 25.4 3.3 30 9-50 242-271 (311)
85 1mzh_A Deoxyribose-phosphate a 20.5 2.1E+02 0.0073 21.8 5.9 60 3-67 109-169 (225)
86 1w8s_A FBP aldolase, fructose- 20.5 1.8E+02 0.0063 22.9 5.6 38 35-72 216-253 (263)
87 2w6r_A Imidazole glycerol phos 20.4 1E+02 0.0034 23.7 3.9 36 4-51 69-104 (266)
88 1y0e_A Putative N-acetylmannos 20.3 76 0.0026 23.7 3.1 45 7-66 173-217 (223)
89 1uhw_A Pleckstrin; three-helix 20.2 34 0.0012 24.3 1.0 31 12-42 37-68 (109)
No 1
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=100.00 E-value=7.1e-54 Score=385.90 Aligned_cols=156 Identities=43% Similarity=0.523 Sum_probs=143.4
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++||||||||||||||++||+|||||++||||||+||+||||||||||.|+||+|+|++|++||+++|+.++|+
T Consensus 313 II~~c~~~gKPVI~ATQmLeSMi~np~PTRAEvsDVAnAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~ 392 (526)
T 4drs_A 313 MISKCNVAGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVMLSGETANGAFPFDAVNVMSRVCAQAETCIDYP 392 (526)
T ss_dssp HHHHHHHHTCCEEEESCTTGGGGSSSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHcCCeEEEhhhhhHHHhhCCCCCCchHHHHHHHHHhCCceEEEcchhhcccCHHHHHHHHHHHHHHHhhcccch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCC-Cchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQY-ETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~-e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..|+.+....+.+.+. ++|+.+++. +++++|.+|++|+++|||||.+ +|++++++|+|+|+|||+|+
T Consensus 393 ~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~sG~tA~~iSr~RP~~pI~a~T~~~~~~r~l~L~wGV~p~ 472 (526)
T 4drs_A 393 VLYHAIHSSVPKPVAVPEAIACSAVESAHDVNAKLIITITETGNTARLISKYRPSQTIIACTAKPEVARGLKIARGVKTY 472 (526)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHHTCCSSEEEEEESCHHHHHHGGGSTTEEEE
T ss_pred hhhhhhhhccCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHhhhccCCeEEE
Confidence 8898887776655554 666666655 3578999999999999999999 69999999999999999999
Q ss_pred eecCCCCCC
Q psy257 148 QKKSTDPTD 156 (157)
Q Consensus 148 ~~~~sd~~~ 156 (157)
++++.+++|
T Consensus 473 ~~~~~~~~d 481 (526)
T 4drs_A 473 VLNSIHHSE 481 (526)
T ss_dssp ECSCCCCHH
T ss_pred EeCCCCCHH
Confidence 999887764
No 2
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.6e-53 Score=381.47 Aligned_cols=156 Identities=44% Similarity=0.542 Sum_probs=140.2
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++||||||||||||||++||+|||||++||||||+||+||||||||||.|+||+|+|++|++||+++|+.+++.
T Consensus 307 iI~~c~~aGKPVi~ATQMLeSMi~~p~PTRAEvsDVanAVldGaDavMLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~ 386 (520)
T 3khd_A 307 MISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANAVLDGTDCVMLSGETAGGKFPVEAVTIMSKICLEAEACIDYK 386 (520)
T ss_dssp HHHHHHHHTCCEEECCCCCGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHcCCCeEEeehhhHHHhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCcCHHHHHHHHHHHHHHHHhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhhccCCCCC-Cchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQY-ETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~-e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..|..+....+.+.+. ++|+.+++. +++++|.+|++|+++|||||.+ +|++++++|||+|+|||+|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TA~~vSr~RP~~PIia~T~~~~~~r~l~L~~GV~p~ 466 (520)
T 3khd_A 387 LLYQSLVNAIETPISVQEAVARSAVETAESIQASLIIALTETGYTARLIAKYKPSCTILALSASDSTVKCLNVHRGVTCI 466 (520)
T ss_dssp HHHHHHHHHSCSCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHHTCCSSEEEEEESCHHHHHHGGGSTTEEEE
T ss_pred hhHhhhhhccCCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhcCCCCCEEEEcCCHHHHHHHhccCCeEEE
Confidence 8887776555444443 566666554 3678999999999999999999 69999999999999999999
Q ss_pred eecCCCCCC
Q psy257 148 QKKSTDPTD 156 (157)
Q Consensus 148 ~~~~sd~~~ 156 (157)
+++..+++|
T Consensus 467 ~~~~~~~~d 475 (520)
T 3khd_A 467 KVGSFQGTD 475 (520)
T ss_dssp ECCSCCCHH
T ss_pred EeCCCCCHH
Confidence 998776654
No 3
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=100.00 E-value=1e-52 Score=376.40 Aligned_cols=152 Identities=41% Similarity=0.552 Sum_probs=137.6
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++|||||+||||||||++||+|||||++||||||+||+||||||||||.|+||+|+|++|++||+++|+.++|.
T Consensus 282 iI~~c~~agkpVi~ATQmLeSMi~~p~PTRAEvsDVanaV~dG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~ 361 (499)
T 3hqn_D 282 LISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEY 361 (499)
T ss_dssp HHHHHHHHTCCEEEESSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHcCCCeEEeehhHHHhccCCCccHHHHHHHHHHHHcCCcEEEEeccccCCCCHHHHHHHHHHHHHHHHhcchhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhccCCCCC-Cchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQY-ETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~-e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..|..+....+.+.+. ++|+.+++. +++++|.+|++|+++|||||.+ +|++++++|||+|+|||+|+
T Consensus 362 ~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~tA~~isr~RP~~pIia~T~~~~~~r~l~L~~GV~p~ 441 (499)
T 3hqn_D 362 VFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESV 441 (499)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHHHHHHTCCSSCEEEEESCHHHHHHGGGSTTEEEE
T ss_pred HHHhhhhhccCCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHhhccCCeEEE
Confidence 8888776655544443 566666554 3678999999999999999999 59999999999999999999
Q ss_pred eecCC
Q psy257 148 QKKST 152 (157)
Q Consensus 148 ~~~~s 152 (157)
+++..
T Consensus 442 ~~~~~ 446 (499)
T 3hqn_D 442 FFDAD 446 (499)
T ss_dssp ECCHH
T ss_pred Eeccc
Confidence 98753
No 4
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=100.00 E-value=1.4e-52 Score=376.31 Aligned_cols=156 Identities=46% Similarity=0.539 Sum_probs=137.2
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||||||||||.|+||+|+|++|++||+++|+.+++.
T Consensus 298 ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAEvsDVAnAV~dGaDavMLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~ 377 (511)
T 3gg8_A 298 MIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVLDGTDCVMLSGETANGEFPVITVETMARICYEAETCVDYP 377 (511)
T ss_dssp HHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCHHHHHHHHHHHHHHHHhchhHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhhhccCCCCC-Cchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQY-ETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~-e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..|+.+....+.+.+. ++|+.+++. +++++|.+|++|+++|||||.+ +|++++++|||+|+|||+|+
T Consensus 378 ~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~tA~~iSr~RP~~PIia~T~~~~~~r~l~L~~GV~p~ 457 (511)
T 3gg8_A 378 ALYRAMCLAVPPPISTQEAVARAAVETAECVNAAIILALTETGQTARLIAKYRPMQPILALSASESTIKHLQVIRGVTTM 457 (511)
T ss_dssp HHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHHHHHHTCCSSCEEEEESCHHHHHHGGGSTTEEEE
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCCEEEEcCCHHHHHHhhccCCeEEE
Confidence 7787665544333333 556665554 3678999999999999999999 59999999999999999999
Q ss_pred eecCCCCCC
Q psy257 148 QKKSTDPTD 156 (157)
Q Consensus 148 ~~~~sd~~~ 156 (157)
+++..+++|
T Consensus 458 ~~~~~~~~d 466 (511)
T 3gg8_A 458 QVPSFQGTD 466 (511)
T ss_dssp ECCC--CHH
T ss_pred EeCCCCCHH
Confidence 998765543
No 5
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=100.00 E-value=5e-52 Score=375.14 Aligned_cols=152 Identities=51% Similarity=0.687 Sum_probs=137.7
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++||||||||||||||++||+|||||++||||||+||+||||||||||.|+||+|+|++|++||+++|+.++|+
T Consensus 332 iI~~c~~agkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvldG~DavMLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~ 411 (550)
T 3gr4_A 332 MIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHL 411 (550)
T ss_dssp HHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhCCCEEEEehhhHHhhcCCCccHHHHHHHHHHHHcCCcEEEEecCccCCCCHHHHHHHHHHHHHHHhhcchhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhhccCCCCC-Cchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQY-ETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~-e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
.+|..+....+.+.+. ++|+.+++. +++++|.+|++|+++|||||.+ +|++++++|||+|+|||+|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TA~~iSr~RP~~PIia~T~~~~~aR~l~L~~GV~P~ 491 (550)
T 3gr4_A 412 QLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPV 491 (550)
T ss_dssp HHHHHHHHHSCCCCCHHHHHHHHHHHHHHHTTCSCEEEECSSSHHHHHHHTTCCSSCEEEEESCHHHHHHGGGSTTEEEE
T ss_pred HHHHhhhhccCCCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHHhccCCeEEE
Confidence 8888876554444444 556665554 3678999999999999999999 59999999999999999999
Q ss_pred eecCC
Q psy257 148 QKKST 152 (157)
Q Consensus 148 ~~~~s 152 (157)
+++..
T Consensus 492 ~~~~~ 496 (550)
T 3gr4_A 492 LCKDP 496 (550)
T ss_dssp ECCSC
T ss_pred Eeccc
Confidence 98764
No 6
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=100.00 E-value=8.2e-52 Score=368.59 Aligned_cols=153 Identities=35% Similarity=0.415 Sum_probs=114.8
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||||||||||.|+||+|+|++|++||+++|+.+++.
T Consensus 263 ii~~araaGkpvI~ATQMLeSMi~~p~PTRAEvsDVanAV~dG~DavMLSgETA~G~yPveaV~~m~~I~~~~E~~~~~~ 342 (470)
T 1e0t_A 263 MIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSR 342 (470)
T ss_dssp HHHHHHHHTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEECCC------CHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCEEEechhhHhhccCCCccHHHHhhhhHhhhcCccEEEecccccCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999976544
Q ss_pred HHHHHHhhhccCCCCCCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeeee
Q psy257 81 KLLTELKSMVSITKQYETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIMLQ 148 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl~ 148 (157)
..|..... .....++|+.+++. +++++|.+|++|+++|||||.+ +|++++++|||+|+|||+|++
T Consensus 343 ~~~~~~~~---~~~~~~aia~aa~~~a~~l~a~aIv~~T~sG~ta~~isr~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~ 419 (470)
T 1e0t_A 343 LEFNNDNR---KLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQL 419 (470)
T ss_dssp CC------------CHHHHHHHHHHHHHHTTCSBEEEECSSSHHHHHHHTTCCSSBEEEEESCHHHHHHGGGSTTEEEEE
T ss_pred HHHhhhcc---ccchHHHHHHHHHHHHHhcCCCEEEEECCChhHHHHHHhhCCCCCEEEECCCHHHHHHhhhhccceEEE
Confidence 33432211 11123556666544 4678999999999999999999 599999999999999999999
Q ss_pred ecCCCCCC
Q psy257 149 KKSTDPTD 156 (157)
Q Consensus 149 ~~~sd~~~ 156 (157)
++..+++|
T Consensus 420 ~~~~~~~~ 427 (470)
T 1e0t_A 420 VKEITSTD 427 (470)
T ss_dssp CSCCCSHH
T ss_pred ecCCCCHH
Confidence 98766543
No 7
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=100.00 E-value=2.7e-51 Score=374.04 Aligned_cols=154 Identities=44% Similarity=0.512 Sum_probs=135.8
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++||++|||||+||||||||++||+|||||++||||||+||+||||||||||.|+||+|+|++|++||+++|+..++.
T Consensus 283 ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAv~dGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~ 362 (606)
T 3t05_A 283 LIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYK 362 (606)
T ss_dssp HHHHHHHHTCCEEEESSSSGGGTTCSSCCHHHHHHHHHHHHHTCSEEEECHHHHSCSCSHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHcCCCEEEecccccCCCCHHHHHHHHHHHHHHHHhhhhhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHhhhccCCCC-CCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQ-YETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~-~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..|....... +.+ .++|+.+++. +++++|.+|++|+++|||||.+ +|++++++|||+|+|||+|+
T Consensus 363 ~~~~~~~~~~--~~~~~~aia~aa~~~a~~l~a~aIv~~T~sG~ta~~isr~RP~~pIia~t~~~~~~r~l~L~~GV~p~ 440 (606)
T 3t05_A 363 KLLSDRTKLV--ETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPV 440 (606)
T ss_dssp HHHHHHHHHS--CCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHHHHHHTCCSSEEEEEESCHHHHHHHHTSSSEEEE
T ss_pred hhhhhhcccc--CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHhhCCCCCEEEEcCCHHHHHhhhccCCeEEE
Confidence 7776654321 222 2456555544 3678999999999999999999 69999999999999999999
Q ss_pred eecCCCCCC
Q psy257 148 QKKSTDPTD 156 (157)
Q Consensus 148 ~~~~sd~~~ 156 (157)
+++..+++|
T Consensus 441 ~~~~~~~~~ 449 (606)
T 3t05_A 441 VKKGRKSTD 449 (606)
T ss_dssp ECCCCSSHH
T ss_pred EeCCCCCHH
Confidence 998766543
No 8
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=100.00 E-value=7.4e-51 Score=370.35 Aligned_cols=154 Identities=38% Similarity=0.491 Sum_probs=133.1
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++||+++|+.+++.
T Consensus 264 ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAE~sDvanav~dG~DavMLSgETA~G~yPveaV~~m~~I~~~~E~~~~~~ 343 (587)
T 2e28_A 264 LIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVANAIFDGTDAVMLSGETAAGQYPVEAVKTMHQIALRTEQALEHR 343 (587)
T ss_dssp HHHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHcCCCeEEechhhHhhccCCCccHHHHhccchhhhhCcceeeecccccCCCCHHHHHHHHHHHHHHHhhhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred HHHHHHhhhccCCCCCCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeeee
Q psy257 81 KLLTELKSMVSITKQYETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIMLQ 148 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl~ 148 (157)
..|....... +....++|+.+++. +++++|.+|++|+++|||||.+ +|++++++|||+|+|||+|++
T Consensus 344 ~~~~~~~~~~-~~~~~~aia~aa~~~a~~~~a~aIv~~T~sG~ta~~isr~Rp~~pI~a~t~~~~~~r~l~l~~GV~p~~ 422 (587)
T 2e28_A 344 DILSQRTKES-QTTITDAIGQSVAHTALNLDVAAIVTPTVSGKTPQMVAKYRPKAPIIAVTSNEAVSRRLALVWGVYTKE 422 (587)
T ss_dssp HHHHHHHTTC-CCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHHTCCSSCEEEEESSHHHHHHGGGSTTEEEEE
T ss_pred hHhhhhhccc-ccchHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhcCceEEe
Confidence 5565433211 11112556555544 4678999999999999999999 599999999999999999999
Q ss_pred ecCCCCC
Q psy257 149 KKSTDPT 155 (157)
Q Consensus 149 ~~~sd~~ 155 (157)
++..+++
T Consensus 423 ~~~~~~~ 429 (587)
T 2e28_A 423 APHVNTT 429 (587)
T ss_dssp CCCCCSH
T ss_pred ccccCCH
Confidence 9876554
No 9
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=100.00 E-value=1.3e-50 Score=359.75 Aligned_cols=144 Identities=24% Similarity=0.238 Sum_probs=127.0
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||++|+++|||||+||||||||++||+|||||++||||||+||+||||||||||.|+||+|+|++|++||+++|+...+
T Consensus 273 ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAV~dGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~- 351 (461)
T 3qtg_A 273 IVHTSLKYGKPIAVATQLLDSMQSSPIPTRAEINDVFTTASMGVDSLWLTNETASGKYPLAAVSWLSRILMNVEYQIPQ- 351 (461)
T ss_dssp HHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHHTCCCCCCC-
T ss_pred HHHHHHHhCCCEEEeccchHhhccCCCccHHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHHHHHHHhhhhh-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred HHHHHHhhhccCCCCC-Cchhhhhhhh-------hhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeeee
Q psy257 81 KLLTELKSMVSITKQY-ETIPTCLSYM-------SGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIMLQ 148 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~~-e~i~~~~a~a-------~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl~ 148 (157)
| +.+.+. ++++.+++.+ ++++|.+|++|+++|||||.+ +|++++++|||+|+|||+|++
T Consensus 352 --~-------~~~~~~~~aia~aa~~~a~~~~a~Iv~~T~SG~tA~~vsr~RP~~pIia~T~~~~~~r~l~l~~GV~p~~ 422 (461)
T 3qtg_A 352 --S-------PLLQNSRDRFAKGLVELAQDLGANILVFSMSGTLARRIAKFRPRGVVYVGTPNVRVARSLSIVWALEPLY 422 (461)
T ss_dssp --C-------CCCCSHHHHHHHHHHHHHHHHTCEEEEECSSSHHHHHHHTTCCSSCEEEEESCHHHHHHHTTSTTEEEEE
T ss_pred --c-------cCCCCHHHHHHHHHHHHHHhcCCCEEEECCCcHHHHHHHhhCCCCCEEEeCCCHHHHhhceeccceEEEE
Confidence 1 222232 4565555443 578999999999999999999 599999999999999999999
Q ss_pred ecCCCCC
Q psy257 149 KKSTDPT 155 (157)
Q Consensus 149 ~~~sd~~ 155 (157)
++ .+++
T Consensus 423 ~~-~~~~ 428 (461)
T 3qtg_A 423 IP-AENY 428 (461)
T ss_dssp CC-CSSH
T ss_pred eC-CCCH
Confidence 98 4443
No 10
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=100.00 E-value=1.5e-46 Score=336.87 Aligned_cols=151 Identities=42% Similarity=0.548 Sum_probs=133.2
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 80 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~ 80 (157)
||.+|+++|||||+||||||||+.+|.|||||++|++|+++||+|++|||+||+.|+||+|+|++|++||+++|+.+++.
T Consensus 283 ii~aaraaGkpvi~ATQMLeSMi~~~~ptraEvsdva~av~~G~d~vmLs~eta~G~yPveaV~~m~~I~~~aE~~~~~~ 362 (500)
T 1a3w_A 283 LIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAYL 362 (500)
T ss_dssp HHHHHHHHTCCEEECSSTTGGGGSCSSCCHHHHHHHHHHHHHTCSEECBSTTTTTCSCHHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHhcCCCEEEEeehhhhhccCCCchHHHHHHHHHHHHhCCCEEEecchhhcchhHHHHHHHHHHHHHHhhhhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHhhhccCCCC-CCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257 81 KLLTELKSMVSITKQ-YETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML 147 (157)
Q Consensus 81 ~~~~~l~~~~~~~~~-~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl 147 (157)
..|..+....+.+.+ .++|+.+++. +++++|.+|++|+++|||||.+ +|++++++|||+|+|||+|+
T Consensus 363 ~~~~~~~~~~~~~~~~~~aia~aa~~~a~~~~a~aIv~~T~sG~ta~~isr~RP~~pI~a~t~~~~~~r~l~l~~GV~p~ 442 (500)
T 1a3w_A 363 PNYDDMRNCTPKPTSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSHLYRGVFPF 442 (500)
T ss_dssp HHHHHHTTSCCSSCCHHHHHHHHHHHHHHHHTCSCEEEECSSSHHHHHHHHTCCSSCEEEEESCTTHHHHGGGSTTEEEE
T ss_pred hHHHhhhhccccccchHHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCCEEEEcCCHHHHHhhhhhCCeEEE
Confidence 777665431222222 2556666554 4678999999999999999999 59999999999999999999
Q ss_pred eecC
Q psy257 148 QKKS 151 (157)
Q Consensus 148 ~~~~ 151 (157)
+++.
T Consensus 443 ~~~~ 446 (500)
T 1a3w_A 443 VFEK 446 (500)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9876
No 11
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=94.23 E-value=0.011 Score=50.37 Aligned_cols=62 Identities=8% Similarity=0.084 Sum_probs=47.7
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccC--CCChHHHHHHHHHHHHHHHHhh
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAK--GDYPVECVRAMHNTCKEAEAAI 77 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~--G~~p~~~v~~~~~i~~~~e~~~ 77 (157)
++..|+++|||+...+. ...|+.+++.+|.|+++++.++.. +.| .+.|+++++|+.++|...
T Consensus 239 iv~aaraaGk~~g~~~~--------------d~~~a~~~~~~Gf~~l~~~~di~~l~~~~-~~~v~~a~~iv~a~e~~~ 302 (339)
T 1izc_A 239 FSTAAQRNGVPIFGGAL--------------SVDMVPSLIEQGYRAIAVQFDVWGLSRLV-HGSLAQARASAKQFAGQG 302 (339)
T ss_dssp HHHHHHHTTCCEEEECS--------------SGGGHHHHHHTTEEEEEEEEHHHHHHHHH-HHHHHHHHHHHGGGCC--
T ss_pred HHHHHHHhCCceeEecC--------------CHHHHHHHHHhCCCEEEecHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 46789999999965441 226899999999999999987766 555 678888888888777653
No 12
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=62.99 E-value=11 Score=29.75 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=25.1
Q ss_pred hhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 33 ISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
..|+..+...|+|+++. | ++..+ |.+..+.+.+.++
T Consensus 193 ~~d~~~~~~~GadgV~V-G-sal~~-p~~~~~~~~~~i~ 228 (232)
T 3igs_A 193 PALAAEAIRYGAWAVTV-G-SAITR-LEHICGWYNDALK 228 (232)
T ss_dssp HHHHHHHHHTTCSEEEE-C-HHHHC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEE-e-hHhcC-HHHHHHHHHHHHH
Confidence 34777788889999999 5 46554 7666666655543
No 13
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=62.18 E-value=11 Score=29.45 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=37.0
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
++.++++|++|++-|- .+ .+ -+-.+....+..|+|+|+- +||..+.+++.++|+
T Consensus 205 v~~~~~~G~~v~~wTv------~~-~~--n~~~~~~~l~~~GvdgI~T-------D~p~~~~~~l~~~~~ 258 (258)
T 2o55_A 205 VCTAHEKGLSVTVWMP------WI-FD--DSEEDWKKCLELQVDLICS-------NYPFGLMNFLSNISE 258 (258)
T ss_dssp HHHHHHTTCEEEEECC------TT-CC--CCHHHHHHHHHHTCSEEEE-------SCHHHHHHHHTC---
T ss_pred HHHHHHCCCEEEEeeC------CC-CC--CCHHHHHHHHHcCCCEEEe-------CCHHHHHHHHHHhcC
Confidence 6789999999998883 00 11 1234556667779999886 689998888887764
No 14
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=60.26 E-value=0.2 Score=40.63 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=25.5
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
++..|+++|||+.+.+ .++ .+....+.+|.+.+..+.
T Consensus 202 iv~aa~aaG~~~~v~~-------~d~-------~~a~~~~~~G~~~~s~~~ 238 (267)
T 2vws_A 202 SIRRIRAAGKAAGFLA-------VAP-------DMAQQCLAWGANFVAVGV 238 (267)
T ss_dssp HHHHHHHTTCEEEEEC-------SSH-------HHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhCCeEEEec-------CCH-------HHHHHHHHCCCCEEEEch
Confidence 4678999999997732 121 255566778888887754
No 15
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=58.44 E-value=17 Score=29.99 Aligned_cols=54 Identities=26% Similarity=0.334 Sum_probs=37.2
Q ss_pred hcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 7 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 7 ~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
..+.|||++..+ =| -+|++.+...|+|||++.+==..++.|.+-.+.+..-++.
T Consensus 185 ~~~vPVI~eGGI---------~T---PsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~a 238 (265)
T 1wv2_A 185 EAKVPVLVDAGV---------GT---ASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVA 238 (265)
T ss_dssp HCSSCBEEESCC---------CS---HHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeCCC---------CC---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 357787776442 22 4599999999999999964334588897766666555433
No 16
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=58.27 E-value=11 Score=32.11 Aligned_cols=46 Identities=28% Similarity=0.529 Sum_probs=34.4
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-CcceeeecCcccCCCCh
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLSGETAKGDYP 59 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~d~imLs~ETa~G~~p 59 (157)
++++-+.|||||+.|-| -|-.|+-..++.++. |-+-++|=.++. ||
T Consensus 128 L~~va~~gKPviLstGm---------stl~Ei~~Ave~i~~~g~~viLlhC~s~---YP 174 (350)
T 3g8r_A 128 LERIARSDKPVVASTAG---------ARREDIDKVVSFMLHRGKDLTIMHCVAE---YP 174 (350)
T ss_dssp HHHHHTSCSCEEEECTT---------CCHHHHHHHHHHHHTTTCCEEEEECCCC---SS
T ss_pred HHHHHhhCCcEEEECCC---------CCHHHHHHHHHHHHHcCCCEEEEecCCC---CC
Confidence 56777889999999985 267799999988875 567666655543 66
No 17
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=57.89 E-value=5.9 Score=34.92 Aligned_cols=35 Identities=34% Similarity=0.463 Sum_probs=28.0
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
.|++.+.|||.+.-+-. ..|++.|+..|||++|+-
T Consensus 354 ~~~~~~iPVIa~GGI~~------------~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 354 EARKHGIPVIADGGIKY------------SGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHTTTCCEEEESCCCS------------HHHHHHHHHTTCSEEEES
T ss_pred HHHhCCCcEEEeCCCCC------------HHHHHHHHHhCchhheec
Confidence 45667899998766543 469999999999999984
No 18
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=57.47 E-value=6.2 Score=34.67 Aligned_cols=35 Identities=34% Similarity=0.571 Sum_probs=27.1
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
.|++.++|||.+.-+-. ..|++.|+..|||++|+-
T Consensus 329 ~~~~~~iPVIa~GGI~~------------~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 329 VANEYGIPVIADGGIRF------------SGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHGGGTCCEEEESCCCS------------HHHHHHHHHTTCSEEEES
T ss_pred HhccCCCeEEEeCCCCC------------HHHHHHHHHcCCCeEEec
Confidence 34456899998766433 459999999999999994
No 19
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=52.81 E-value=36 Score=26.41 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=34.3
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHH-HHhhCcceeeecCcccCCCChHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVAN-AVLDGADCVMLSGETAKGDYPVECVRAMHN 68 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~n-av~dg~d~imLs~ETa~G~~p~~~v~~~~~ 68 (157)
++.++++|++|++=|- ++ -.++.. .+..|+|+|+- +||..+.+.+.+
T Consensus 187 v~~~~~~G~~v~~wTv------n~-------~~~~~~~l~~~GvdgIiT-------D~p~~~~~~~~~ 234 (248)
T 1zcc_A 187 IEASRKAGLEIMVYYG------GD-------DMAVHREIATSDVDYINL-------DRPDLFAAVRSG 234 (248)
T ss_dssp HHHHHHHTCEEEEECC------CC-------CHHHHHHHHHSSCSEEEE-------SCHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEECC------CC-------HHHHHHHHHHcCCCEEEE-------CCHHHHHHHHHH
Confidence 6788999999999872 11 235666 67779999886 579877766654
No 20
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=52.37 E-value=27 Score=26.42 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=32.7
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
.+.||+.+.-+ + ..++..++..|+|+|.+.+---..+.|.+.++.+.+.++
T Consensus 163 ~~~pvia~GGI----------~---~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~ 213 (221)
T 1yad_A 163 ISIPVIAIGGM----------T---PDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLK 213 (221)
T ss_dssp CCSCEEEESSC----------C---GGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEECCC----------C---HHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHHHHHHHH
Confidence 46777776553 2 236777777899999986543333457777776655443
No 21
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=51.39 E-value=25 Score=29.79 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=34.4
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-CcceeeecCcccCCCChH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLSGETAKGDYPV 60 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~d~imLs~ETa~G~~p~ 60 (157)
++++-+.|||||+.|-| -|-.|+-..++.+.. |.+-++|= -.-.||.
T Consensus 141 L~~va~~gkPviLstGm---------at~~Ei~~Ave~i~~~G~~iiLlh---c~s~Yp~ 188 (349)
T 2wqp_A 141 IKLVASFGKPIILSTGM---------NSIESIKKSVEIIREAGVPYALLH---CTNIYPT 188 (349)
T ss_dssp HHHHHTTCSCEEEECTT---------CCHHHHHHHHHHHHHHTCCEEEEE---CCCCSSC
T ss_pred HHHHHhcCCeEEEECCC---------CCHHHHHHHHHHHHHcCCCEEEEe---ccCCCCC
Confidence 56677789999999985 266799988888874 56766663 3455764
No 22
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=51.22 E-value=24 Score=27.68 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=25.5
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
+..|+..|.|.|..+. | .+++..|...|+|.|.+
T Consensus 112 ~~~~~~~g~~~i~G~~-----------t---~~e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 112 LEAGVDSEIPLLPGIS-----------T---PSEIMMGYALGYRRFKL 145 (225)
T ss_dssp HHHHHHCSSCEECEEC-----------S---HHHHHHHHTTTCCEEEE
T ss_pred HHHHHHhCCCEEEeeC-----------C---HHHHHHHHHCCCCEEEE
Confidence 4678888888886421 2 34678888999999999
No 23
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=50.42 E-value=44 Score=27.50 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=51.4
Q ss_pred hHHHhcCCcEEEeehhhHHhhhCCCC-----CchhhhHHHHHHhhCcceeeecCcccCCCC---hHHHHHHHHHHHH
Q psy257 3 AKCNKVGKPVICATQMLESMIKKPRA-----TRAEISDVANAVLDGADCVMLSGETAKGDY---PVECVRAMHNTCK 71 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~~~p-----tRaEvsDv~nav~dg~d~imLs~ETa~G~~---p~~~v~~~~~i~~ 71 (157)
+.+.++|.++|+.+--|- |...+.| |..|+-+-+.+|..|++-.++...+..|.| |.++++...++.+
T Consensus 31 ~l~e~aG~d~ilvGdSl~-~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~rl~k 106 (275)
T 1o66_A 31 ALMDDAGVEMLLVGDSLG-MAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMA 106 (275)
T ss_dssp HHHHHTTCCEEEECTTHH-HHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECHHHH-HHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHHHHHHHH
Confidence 356778899887553332 4444444 588999999999999996566689999998 8889887777766
No 24
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=50.33 E-value=48 Score=25.77 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=35.3
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNT 69 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i 69 (157)
++.|+++|++|++=|- - +-.+....+..|+|+|+- +||-.+.+.+.++
T Consensus 197 v~~~~~~G~~V~~WTv----------n---~~~~~~~l~~~GVDgIiT-------D~P~~~~~~~~~~ 244 (250)
T 3ks6_A 197 MAQVQAAGLDFGCWAA----------H---TPSQITKALDLGVKVFTT-------DRPTLAIALRTEH 244 (250)
T ss_dssp HHHHHHTTCEEEEECC----------C---SHHHHHHHHHHTCSEEEE-------SCHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEeC----------C---CHHHHHHHHHcCCCEEEc-------CCHHHHHHHHHHh
Confidence 6778889999987761 1 234566677789999986 6898887777654
No 25
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=50.09 E-value=16 Score=28.17 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=24.6
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++.|++.|.|+|..+. | .+++..|...|+|.+.+
T Consensus 97 ~~~~~~~g~~~i~G~~-----------t---~~e~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 97 AALAQARGVPYLPGVL-----------T---PTEVERALALGLSALKF 130 (207)
T ss_dssp HHHHHHHTCCEEEEEC-----------S---HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhCCCEEecCC-----------C---HHHHHHHHHCCCCEEEE
Confidence 4567778888776421 2 44677888899999988
No 26
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=49.83 E-value=8 Score=33.82 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+.|||.+.-+.. -.||+.|+..|||++|+-
T Consensus 352 ~ipvia~GGi~~------------~~di~kAlalGA~~V~iG 381 (503)
T 1me8_A 352 YIPVCSDGGIVY------------DYHMTLALAMGADFIMLG 381 (503)
T ss_dssp ECCEEEESCCCS------------HHHHHHHHHTTCSEEEES
T ss_pred CceEEEeCCCCC------------HHHHHHHHHcCCCEEEEC
Confidence 799998876554 459999999999999984
No 27
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=49.45 E-value=26 Score=27.42 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=26.0
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++.|++.|+|+|..+ -| .+++..|...|+|.|.+
T Consensus 103 ~~~ar~~g~~~i~Gv-----------~t---~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 103 VKLCQDLNFPITPGV-----------NN---PMAIEIALEMGISAVKF 136 (224)
T ss_dssp HHHHHHTTCCEECEE-----------CS---HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhCCCEEecc-----------CC---HHHHHHHHHCCCCEEEE
Confidence 567888999988742 22 34577788899999999
No 28
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=48.70 E-value=11 Score=31.64 Aligned_cols=35 Identities=34% Similarity=0.348 Sum_probs=27.4
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
+...+.|||.+.-+-. -.||+.|+..|||++++-.
T Consensus 219 ~~~~~ipvIa~GGI~~------------g~di~kAlalGA~~V~vG~ 253 (351)
T 2c6q_A 219 AHGLKGHIISDGGCSC------------PGDVAKAFGAGADFVMLGG 253 (351)
T ss_dssp HHHTTCEEEEESCCCS------------HHHHHHHHHTTCSEEEEST
T ss_pred HhhcCCcEEEeCCCCC------------HHHHHHHHHcCCCceeccH
Confidence 4455889998776554 5699999999999998743
No 29
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=47.01 E-value=9.9 Score=33.24 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=25.4
Q ss_pred hcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 7 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 7 ~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+.+.|||.+.-+-. ..|++.++..|||++|+-
T Consensus 330 ~~~iPVIa~GGI~~------------~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 330 GTGVPLIADGGIRF------------SGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp TTTCCEEEESCCCS------------HHHHHHHHHHTCSEEEEC
T ss_pred cCCCcEEEeCCCCC------------HHHHHHHHHcCCCeeeec
Confidence 45889998766533 459999999999999994
No 30
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=46.93 E-value=38 Score=27.91 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=50.5
Q ss_pred hHHHhcCCcEEEeehhhHHhhhCCCC-----CchhhhHHHHHHhhCcceeeecCcccCCCC---hHHHHHHHHHHHH
Q psy257 3 AKCNKVGKPVICATQMLESMIKKPRA-----TRAEISDVANAVLDGADCVMLSGETAKGDY---PVECVRAMHNTCK 71 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~~~p-----tRaEvsDv~nav~dg~d~imLs~ETa~G~~---p~~~v~~~~~i~~ 71 (157)
+.+.++|.++|+.+--|- |...+.| |..|+-+-+.+|..|++-.++...+..|.| |.++++...++.+
T Consensus 48 ~l~e~aG~d~ilvGdSl~-~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~rl~~ 123 (281)
T 1oy0_A 48 RIFDEAGIPVLLVGDSAA-NVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFLK 123 (281)
T ss_dssp HHHHTTTCCEEEECTTHH-HHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECHHHH-HHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHHHHHHHHHH
Confidence 346778888887553332 4444444 588999999999999996666699999998 7787776666666
No 31
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=46.08 E-value=26 Score=28.21 Aligned_cols=46 Identities=26% Similarity=0.430 Sum_probs=34.6
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMH 67 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~ 67 (157)
++.|+++|++|++=| .+ +-.++...+..|+|+|+- +||-.+.+.+.
T Consensus 261 v~~~~~~Gl~V~~WT--Vn-----------~~~~~~~l~~~GVDgIiT-------D~P~~~~~~l~ 306 (313)
T 3l12_A 261 VAEAHDLGLIVLTWT--VN-----------EPEDIRRMATTGVDGIVT-------DYPGRTQRILI 306 (313)
T ss_dssp HHHHHHTTCEEEEBC--CC-----------SHHHHHHHHHHTCSEEEE-------SCHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEc--CC-----------CHHHHHHHHHcCCCEEEe-------CCHHHHHHHHH
Confidence 678999999999887 22 234667777789999986 68977766654
No 32
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=45.77 E-value=12 Score=30.96 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=24.4
Q ss_pred HhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 6 NKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 6 ~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
...+.|||.+.-+-. -.|+..|+..|||++|+-
T Consensus 207 ~~~~ipVIa~GGI~~------------g~Dv~kalalGAdaV~iG 239 (336)
T 1ypf_A 207 KAASKPIIADGGIRT------------NGDVAKSIRFGATMVMIG 239 (336)
T ss_dssp HTCSSCEEEESCCCS------------THHHHHHHHTTCSEEEES
T ss_pred HHcCCcEEEeCCCCC------------HHHHHHHHHcCCCEEEeC
Confidence 344677777655432 569999999999999983
No 33
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=43.36 E-value=12 Score=32.27 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=24.4
Q ss_pred hcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 7 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 7 ~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
+.+.|||-+.-+-. ..|++.++..|||+||+
T Consensus 244 ~~~IPVIA~GGI~~------------~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 244 KFGIPIIADGGIRY------------SGDIGKALAVGASSVMI 274 (400)
T ss_dssp TTTCCEEEESCCCS------------HHHHHHHHTTTCSEEEE
T ss_pred hcCCCEEecCCCCC------------HHHHHHHHHcCCCEEEE
Confidence 35788887766543 45999999999999996
No 34
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=43.27 E-value=17 Score=32.90 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=26.2
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
.+++.|+|||-=.- +-+ .-||+.|+..|||+|||-
T Consensus 379 ~a~~~~vpvIADGG---------I~~---sGDi~KAlaaGAd~VMlG 413 (556)
T 4af0_A 379 FASRFGIPCIADGG---------IGN---IGHIAKALALGASAVMMG 413 (556)
T ss_dssp HHGGGTCCEEEESC---------CCS---HHHHHHHHHTTCSEEEES
T ss_pred HHHHcCCCEEecCC---------cCc---chHHHHHhhcCCCEEEEc
Confidence 45677888875333 222 569999999999999994
No 35
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=43.14 E-value=59 Score=26.43 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
+.|||...-+-. -.|+..++..|||+|++..
T Consensus 256 ~ipvia~GGI~~------------~~d~~kal~~GAd~V~igr 286 (332)
T 1vcf_A 256 HLPLVASGGVYT------------GTDGAKALALGADLLAVAR 286 (332)
T ss_dssp SSCEEEESSCCS------------HHHHHHHHHHTCSEEEECG
T ss_pred CCeEEEECCCCC------------HHHHHHHHHhCCChHhhhH
Confidence 578887766543 4599999999999999954
No 36
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=42.73 E-value=0.69 Score=38.10 Aligned_cols=37 Identities=16% Similarity=0.002 Sum_probs=25.7
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
++..|+++|||+.+.+ . -| .++...+.+|++.+..+.
T Consensus 223 iv~aaraaG~~~gv~~-------~--d~-----~~a~~~~~~G~~~~s~~~ 259 (287)
T 2v5j_A 223 AIVQIRESGKAPGILI-------A--NE-----QLAKRYLELGALFVAVGV 259 (287)
T ss_dssp HHHHHHHTTSEEEEEC-------C--CH-----HHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHcCCeeEEec-------C--CH-----HHHHHHHHhCCCEEEECc
Confidence 4678999999997622 1 12 245566778998888754
No 37
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=42.02 E-value=16 Score=31.04 Aligned_cols=33 Identities=36% Similarity=0.618 Sum_probs=25.3
Q ss_pred HhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 6 NKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 6 ~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+..+.|||.+.-+-. -.|++.++..|||+||+.
T Consensus 208 ~~~~iPVIA~GGI~~------------~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 208 NEYGIPVIADGGIRF------------SGDISKAIAAGASCVMVG 240 (366)
T ss_dssp GGGTCCEEEESCCCS------------HHHHHHHHHTTCSEEEES
T ss_pred hhcCCeEEEeCCCCC------------HHHHHHHHHcCCCEEEEC
Confidence 356788887765433 458999999999999984
No 38
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=41.45 E-value=17 Score=31.37 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=26.9
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
+.+.+.|||.+.-+-. -.|++.|+..|||++|+.+
T Consensus 324 ~~~~~vpVia~GGi~~------------~~di~kalalGA~~v~~g~ 358 (486)
T 2cu0_A 324 AQEYGLYVIADGGIRY------------SGDIVKAIAAGADAVMLGN 358 (486)
T ss_dssp HHHHTCEEEEESCCCS------------HHHHHHHHHTTCSEEEEST
T ss_pred HHHcCCcEEecCCCCC------------HHHHHHHHHcCCCceeeCh
Confidence 3445789988775544 4599999999999999844
No 39
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=40.24 E-value=20 Score=28.09 Aligned_cols=31 Identities=26% Similarity=0.154 Sum_probs=20.4
Q ss_pred hhHHHHHHhhCcceeeecCcccCCCChHHHHHHH
Q psy257 33 ISDVANAVLDGADCVMLSGETAKGDYPVECVRAM 66 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~ 66 (157)
..|+..+...|+|+++. | ++..+ |.+..+.+
T Consensus 193 ~~d~~~~~~~GadgV~V-G-sai~~-p~~~~~~f 223 (229)
T 3q58_A 193 PALAANAIEHGAWAVTV-G-SAITR-IEHICQWF 223 (229)
T ss_dssp HHHHHHHHHTTCSEEEE-C-HHHHC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEE-c-hHhcC-hHHHHHHH
Confidence 34777777889999999 4 45554 54444433
No 40
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=40.06 E-value=27 Score=27.05 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=25.8
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++.|++.|.|+|..+. | .+++..|...|+|.+.+
T Consensus 102 ~~~~~~~g~~~i~G~~-----------t---~~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 102 LKAATEGTIPLIPGIS-----------T---VSELMLGMDYGLKEFKF 135 (214)
T ss_dssp HHHHHHSSSCEEEEES-----------S---HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhCCCEEEecC-----------C---HHHHHHHHHCCCCEEEE
Confidence 4678888988887421 2 44677888899999999
No 41
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=39.25 E-value=71 Score=26.28 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=44.0
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-CcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
++.+++.|+.|.+..+. ..+-+...+-+++.++.+ |+|.|-| ..|.=.-.|.+.-+.+..+.++
T Consensus 128 v~~a~~~g~~v~f~~~d------~~~~~~~~~~~~~~~~~~~G~~~i~l-~DT~G~~~P~~v~~lv~~l~~~ 192 (325)
T 3eeg_A 128 VKQAKKVVHEVEFFCED------AGRADQAFLARMVEAVIEAGADVVNI-PDTTGYMLPWQYGERIKYLMDN 192 (325)
T ss_dssp HHHHHTTSSEEEEEEET------GGGSCHHHHHHHHHHHHHHTCSEEEC-CBSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEccc------cccchHHHHHHHHHHHHhcCCCEEEe-cCccCCcCHHHHHHHHHHHHHh
Confidence 56788889988775441 123344556677776655 9999999 6788888898777666555443
No 42
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=38.99 E-value=19 Score=30.62 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.9
Q ss_pred hhHHHHHHhhCcceeeec
Q psy257 33 ISDVANAVLDGADCVMLS 50 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs 50 (157)
-.|+..|+..|||+||+-
T Consensus 211 ~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 211 SGDIVKALAFGADFVMIG 228 (361)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 459999999999999983
No 43
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=38.42 E-value=28 Score=30.01 Aligned_cols=47 Identities=15% Similarity=0.387 Sum_probs=33.5
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-Cc-ceeeecCcccCCCChH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GA-DCVMLSGETAKGDYPV 60 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~-d~imLs~ETa~G~~p~ 60 (157)
++++-+.|||||+.|-| -|-.|+-..++.++. |. +-++| | -.-.||.
T Consensus 151 L~~va~~gKPViLStGm---------aTl~Ei~~Ave~i~~~Gn~~iiLl--h-c~s~YPt 199 (385)
T 1vli_A 151 LKYVARLNRPMIFSTAG---------AEISDVHEAWRTIRAEGNNQIAIM--H-CVAKYPA 199 (385)
T ss_dssp HHHHHTTCSCEEEECTT---------CCHHHHHHHHHHHHTTTCCCEEEE--E-ECSSSSC
T ss_pred HHHHHhcCCeEEEECCC---------CCHHHHHHHHHHHHHCCCCcEEEE--e-ccCCCCC
Confidence 56677789999999985 266799999988875 55 45555 2 2445763
No 44
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=38.40 E-value=91 Score=24.94 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=23.8
Q ss_pred HHHHHHhhCcceeeecCcccCCCChHHHHHHHHH
Q psy257 35 DVANAVLDGADCVMLSGETAKGDYPVECVRAMHN 68 (157)
Q Consensus 35 Dv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~ 68 (157)
++..++..|+|.|.++||...| -..+++.....
T Consensus 137 e~~~a~~~Gad~V~~~G~~g~g-~~~~~~~h~rt 169 (305)
T 2nv1_A 137 EATRRIAEGASMLRTKGEPGTG-NIVEAVRHMRK 169 (305)
T ss_dssp HHHHHHHTTCSEEEECCCTTSC-CTHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEeccccCcc-chHHHHhhhhh
Confidence 5666778899999999998667 45555555433
No 45
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=36.33 E-value=25 Score=29.58 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=25.2
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+...+.|||.+.-+-. ..|++.++..|||+||+.
T Consensus 203 ~~~~~iPVIA~GGI~~------------~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 203 ASKFGIPIIADGGIRY------------SGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHTCCEEEESCCCS------------HHHHHHHHHHTCSEEEES
T ss_pred HhhcCCeEEEECCCCC------------HHHHHHHHHcCCCEEEEC
Confidence 3445788887765432 358999999999999974
No 46
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=34.71 E-value=27 Score=27.82 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=25.2
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
++.|+++|.|++--.. | .+++..|...|+|.|-+
T Consensus 120 i~~~~~~gi~~ipGv~-----------T---ptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 120 VRACQEIGIDIVPGVN-----------N---PSTVEAALEMGLTTLKF 153 (232)
T ss_dssp HHHHHHHTCEEECEEC-----------S---HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHcCCCEEcCCC-----------C---HHHHHHHHHcCCCEEEE
Confidence 5667777887765321 2 56788899999999988
No 47
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=34.35 E-value=52 Score=27.13 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=44.2
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
++.+++.|+.|.+.... .-..++-+...+-+++..+. .|+|.|.| ..|.=.-.|.++-+.+..+.++
T Consensus 143 v~~ak~~G~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l-~DT~G~~~P~~v~~lv~~l~~~ 210 (337)
T 3ble_A 143 IEYAIKSGLKINVYLED---WSNGFRNSPDYVKSLVEHLSKEHIERIFL-PDTLGVLSPEETFQGVDSLIQK 210 (337)
T ss_dssp HHHHHHTTCEEEEEEET---HHHHHHHCHHHHHHHHHHHHTSCCSEEEE-ECTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEEEE---CCCCCcCCHHHHHHHHHHHHHcCCCEEEE-ecCCCCcCHHHHHHHHHHHHHh
Confidence 56788999998876443 11112233455566666544 49999999 5677777898887777666544
No 48
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=34.16 E-value=28 Score=30.14 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=26.6
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
+...+.|||.+.-+-. ..|+..++..|||++|+..
T Consensus 354 ~~~~~ipVia~GGI~~------------~~di~kala~GAd~V~iG~ 388 (514)
T 1jcn_A 354 ARRFGVPIIADGGIQT------------VGHVVKALALGASTVMMGS 388 (514)
T ss_dssp HGGGTCCEEEESCCCS------------HHHHHHHHHTTCSEEEEST
T ss_pred HhhCCCCEEEECCCCC------------HHHHHHHHHcCCCeeeECH
Confidence 4455788887765432 4599999999999999954
No 49
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=33.51 E-value=25 Score=30.24 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=24.7
Q ss_pred hcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 7 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 7 ~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..+.|||.+.-+-. -.|+..++..|||++++
T Consensus 338 ~~~ipvia~GGI~~------------~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 338 KYDVPIIADGGIRY------------SGDIVKALAAGAESVMV 368 (494)
T ss_dssp TTTCCEEEESCCCS------------HHHHHHHHHTTCSEEEE
T ss_pred hcCCCEEEECCcCC------------HHHHHHHHHcCCCEEEE
Confidence 35788888766543 45999999999999996
No 50
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=33.41 E-value=60 Score=27.16 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=15.5
Q ss_pred hhHHHHHHhhCcceeeecCc
Q psy257 33 ISDVANAVLDGADCVMLSGE 52 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs~E 52 (157)
..++-.+...|+|+|.++++
T Consensus 205 ~~~a~~a~~~Gad~I~vg~~ 224 (404)
T 1eep_A 205 KEAALDLISVGADCLKVGIG 224 (404)
T ss_dssp HHHHHHHHTTTCSEEEECSS
T ss_pred HHHHHHHHhcCCCEEEECCC
Confidence 34677778889999999654
No 51
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=33.21 E-value=55 Score=25.94 Aligned_cols=40 Identities=35% Similarity=0.417 Sum_probs=27.8
Q ss_pred hHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHH
Q psy257 34 SDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 73 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~ 73 (157)
.|+..++..|+|+|....-=.....|.++++.+.+.+++.
T Consensus 191 eda~~~~~~GAdgViVGSAi~~a~dp~~~~~~l~~~v~~~ 230 (264)
T 1xm3_A 191 KDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEAG 230 (264)
T ss_dssp HHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4788888899999998542223356888777777666543
No 52
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=33.14 E-value=54 Score=26.95 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=29.4
Q ss_pred hhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 33 ISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
-+|++.+...|+|||++-.==..++.|.+-.+.+..-++.
T Consensus 190 psDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~a 229 (268)
T 2htm_A 190 PSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEA 229 (268)
T ss_dssp HHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 4699999999999999865446777887666655554433
No 53
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=31.88 E-value=45 Score=27.27 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=22.5
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+.|||...-+-. -.|+..++..|||+|++.
T Consensus 251 ~ipvia~GGI~~------------~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 251 ASTMIASGGLQD------------ALDVAKAIALGASCTGMA 280 (349)
T ss_dssp TSEEEEESSCCS------------HHHHHHHHHTTCSEEEEC
T ss_pred CCeEEEECCCCC------------HHHHHHHHHcCCCEEEEc
Confidence 577776654332 459999999999999994
No 54
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=30.96 E-value=1.5e+02 Score=23.79 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=46.5
Q ss_pred ChhHHHhcCCcEEEee---------------hhhHHhhhCCCCCc----hhhhHHHHHHhhCcceeeecCcc-------c
Q psy257 1 MIAKCNKVGKPVICAT---------------QMLESMIKKPRATR----AEISDVANAVLDGADCVMLSGET-------A 54 (157)
Q Consensus 1 ii~~c~~~~kPvi~at---------------q~LesM~~~~~ptR----aEvsDv~nav~dg~d~imLs~ET-------a 54 (157)
|++...++|.|+|-++ +++..+.+.+...- ....|+-.|+..|+|.|++..-+ .
T Consensus 35 i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~ 114 (302)
T 2ftp_A 35 LVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEVAVFAAASEAFSQRN 114 (302)
T ss_dssp HHHHHHHTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEECCSHHHHHHHHHTTCCEEEEEEESCHHHHHHH
T ss_pred HHHHHHHcCcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEeCCHHHHHHHHhCCcCEEEEEEecCHHHHHHH
Confidence 3567788899999887 23333332221110 24678999999999999984322 2
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q psy257 55 KGDYPVECVRAMHNTCKEAEA 75 (157)
Q Consensus 55 ~G~~p~~~v~~~~~i~~~~e~ 75 (157)
.+.-+-|.++.+.++++.+-.
T Consensus 115 ~~~s~ee~l~~~~~~v~~a~~ 135 (302)
T 2ftp_A 115 INCSIKDSLERFVPVLEAARQ 135 (302)
T ss_dssp HSSCHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHH
Confidence 344556666666666665543
No 55
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=30.42 E-value=1.6e+02 Score=23.31 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=44.4
Q ss_pred hhHHHhcCCcEEEee---------------hhhHHhhhCC-CCCc---hhhhHHHHHHhhCcceeeecCccc-------C
Q psy257 2 IAKCNKVGKPVICAT---------------QMLESMIKKP-RATR---AEISDVANAVLDGADCVMLSGETA-------K 55 (157)
Q Consensus 2 i~~c~~~~kPvi~at---------------q~LesM~~~~-~ptR---aEvsDv~nav~dg~d~imLs~ETa-------~ 55 (157)
++...++|.|+|-++ +++..+.+.+ .|-- .-..|+-.|+..|+|.|++..-++ .
T Consensus 32 ~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~ 111 (295)
T 1ydn_A 32 INRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVPNMKGYEAAAAAHADEIAVFISASEGFSKANI 111 (295)
T ss_dssp HHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECSSHHHHHHHHHTTCSEEEEEEESCHHHHHHHT
T ss_pred HHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHCCCCEEEEEEecCHHHHHHHc
Confidence 556677788888775 2233332221 1110 124678888999999999975333 3
Q ss_pred CCChHHHHHHHHHHHHHHH
Q psy257 56 GDYPVECVRAMHNTCKEAE 74 (157)
Q Consensus 56 G~~p~~~v~~~~~i~~~~e 74 (157)
+.-.-|.++.+.++++.+-
T Consensus 112 ~~~~~e~~~~~~~~v~~a~ 130 (295)
T 1ydn_A 112 NCTIAESIERLSPVIGAAI 130 (295)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4556667777776666554
No 56
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=30.42 E-value=49 Score=26.09 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=22.8
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
.+.|||.+.-+-+ ..|+..++..|||+|++.
T Consensus 240 ~~ipvia~GGI~~------------~~d~~~~l~~GAd~V~vg 270 (311)
T 1ep3_A 240 VDIPIIGMGGVAN------------AQDVLEMYMAGASAVAVG 270 (311)
T ss_dssp CSSCEEECSSCCS------------HHHHHHHHHHTCSEEEEC
T ss_pred cCCCEEEECCcCC------------HHHHHHHHHcCCCEEEEC
Confidence 3678887655421 348888888999999994
No 57
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=29.46 E-value=1.3e+02 Score=23.19 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=26.7
Q ss_pred HHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 36 VANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 36 v~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
+..++..|+|+++....=-....|.++++.+.+++++
T Consensus 223 ~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~~~~~~ 259 (273)
T 2qjg_A 223 IKDAMEAGAAGVAVGRNIFQHDDVVGITRAVCKIVHE 259 (273)
T ss_dssp HHHHHHHTCSEEECCHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHHHHHhc
Confidence 6666678999999855544556788888777766653
No 58
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=28.52 E-value=39 Score=26.02 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
.|+..+.|||+..-+- + ..|+..+...|+|+|++..
T Consensus 74 i~~~~~ipvi~~Ggi~---------~---~~~~~~~l~~Gad~V~ig~ 109 (247)
T 3tdn_A 74 VRPLTTLPIIASGGAG---------K---MEHFLEAFLRGADKVSINT 109 (247)
T ss_dssp HGGGCCSCEEEESCCC---------S---HHHHHHHHHTTCSEECCSH
T ss_pred HHHhCCCCEEEeCCCC---------C---HHHHHHHHHcCCCeeehhh
Confidence 3555678888764432 2 3577777888999999943
No 59
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=27.82 E-value=41 Score=25.67 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=24.7
Q ss_pred HHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 5 c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
|+..+.|+|+..-+- + ..|+..+...|+|+|++.
T Consensus 71 ~~~~~iPvi~~Ggi~---------~---~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 71 AERVFIPLTVGGGVR---------S---LEDARKLLLSGADKVSVN 104 (252)
T ss_dssp HTTCCSCEEEESSCC---------S---HHHHHHHHHHTCSEEEEC
T ss_pred HHhCCCCEEEECCcC---------C---HHHHHHHHHcCCCEEEEC
Confidence 455688999876642 1 347777788899999993
No 60
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=27.30 E-value=53 Score=28.02 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=30.2
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhh-Ccceeeec
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLS 50 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~d-g~d~imLs 50 (157)
+..+-..||||++.|-| ..|-.|+-.++..+.. |.+-|+|.
T Consensus 242 L~~~a~~gkPVilk~G~--------~~t~~e~~~Ave~i~~~Gn~~i~L~ 283 (385)
T 3nvt_A 242 LKAAGRVDKPILLKRGL--------SATIEEFIGAAEYIMSQGNGKIILC 283 (385)
T ss_dssp HHHHHTSSSCEEEECCT--------TCCHHHHHHHHHHHHTTTCCCEEEE
T ss_pred HHHHHccCCcEEEecCC--------CCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 55677889999998875 2566788888888765 66556664
No 61
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=27.30 E-value=46 Score=26.95 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=23.6
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+.|||...-+-+ ..|+..++..|||+||+.
T Consensus 289 ~ipVi~~GGI~~------------~~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 289 RLPIIGVGGIDS------------VIAAREKIAAGASLVQIY 318 (336)
T ss_dssp SSCEEEESSCCS------------HHHHHHHHHHTCSEEEES
T ss_pred CCCEEEECCCCC------------HHHHHHHHHCCCCEEEee
Confidence 678887765433 458999999999999994
No 62
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=27.17 E-value=54 Score=24.29 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=25.4
Q ss_pred HHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 35 DVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 35 Dv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
|+..+...|+|++....-=-.+..|.++++.+.+.++
T Consensus 172 ~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~ 208 (211)
T 3f4w_A 172 TVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLL 208 (211)
T ss_dssp THHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHh
Confidence 6777777799999884332345678888777765543
No 63
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=27.14 E-value=38 Score=28.97 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=24.9
Q ss_pred HhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 6 NKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 6 ~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
...+.|||...-+-. ..|+..|+..|||++++
T Consensus 333 ~~~~ipvia~GGi~~------------~~di~kal~~GA~~v~v 364 (491)
T 1zfj_A 333 REYGKTIIADGGIKY------------SGDIVKALAAGGNAVML 364 (491)
T ss_dssp HHTTCEEEEESCCCS------------HHHHHHHHHTTCSEEEE
T ss_pred hhcCCCEEeeCCCCC------------HHHHHHHHHcCCcceee
Confidence 346788887655433 56999999999999998
No 64
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=26.83 E-value=1.6e+02 Score=23.82 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=49.8
Q ss_pred hHHHhcCCcEEEeehhhHHhhhCCCC-----CchhhhHHHHHHhhCcceeeecCcccCCCC--hHHHHHHHHHHHH
Q psy257 3 AKCNKVGKPVICATQMLESMIKKPRA-----TRAEISDVANAVLDGADCVMLSGETAKGDY--PVECVRAMHNTCK 71 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~~~p-----tRaEvsDv~nav~dg~d~imLs~ETa~G~~--p~~~v~~~~~i~~ 71 (157)
+.+.++|.++|..+--|- |...+.| |..|+-+-+.+|..|++--++...+..|.| |.++++...++.+
T Consensus 31 ~l~e~aG~d~ilvGdsl~-~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~rl~k 105 (264)
T 1m3u_A 31 KLFADEGLNVMLVGDSLG-MTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMR 105 (264)
T ss_dssp HHHHHHTCCEEEECTTHH-HHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECHHHH-HHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHHHHHH
Confidence 346678888887754332 4444444 568999999999999996555688999988 7788877777765
No 65
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=26.20 E-value=45 Score=28.21 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
..|||...-+-. -.|++.|+..|||+|++.
T Consensus 278 ~ipvia~GGI~~------------g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 278 KVEILASGGIRH------------PLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp TSEEEECSSCCS------------HHHHHHHHHHTCSEEEES
T ss_pred CCeEEEeCCCCC------------HHHHHHHHHcCCCEEEEC
Confidence 456666655433 459999999999999994
No 66
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=25.59 E-value=88 Score=23.72 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=18.0
Q ss_pred hHHHHHHhhCcceeeecCcccCCC-ChHHHHHH
Q psy257 34 SDVANAVLDGADCVMLSGETAKGD-YPVECVRA 65 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~G~-~p~~~v~~ 65 (157)
.|+......|+|++|...-=-.++ .|.++.+.
T Consensus 209 ~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 241 (252)
T 1ka9_F 209 EHFLEAFQAGAEAALAASVFHFGEIPIPKLKRY 241 (252)
T ss_dssp HHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 466666666999999843222233 34444444
No 67
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=24.99 E-value=67 Score=23.59 Aligned_cols=37 Identities=5% Similarity=0.149 Sum_probs=24.4
Q ss_pred HHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHH
Q psy257 35 DVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 71 (157)
Q Consensus 35 Dv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~ 71 (157)
|+..+...|+|++.+++---..+.|.+.++.+.+.++
T Consensus 175 nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~ 211 (215)
T 1xi3_A 175 NAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVE 211 (215)
T ss_dssp THHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEhHHHhCCCCHHHHHHHHHHHHh
Confidence 6666667799999986533334567667666655544
No 68
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=24.91 E-value=31 Score=27.96 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=21.8
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHh-hCcceeeec
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLS 50 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~-dg~d~imLs 50 (157)
+.|||...-+- | ..|+..++. .|+|+||+.
T Consensus 183 ~ipVi~~GgI~---------s---~~da~~~l~~~gad~V~iG 213 (318)
T 1vhn_A 183 RIPTFVSGDIF---------T---PEDAKRALEESGCDGLLVA 213 (318)
T ss_dssp SSCEEEESSCC---------S---HHHHHHHHHHHCCSEEEES
T ss_pred CCeEEEECCcC---------C---HHHHHHHHHcCCCCEEEEC
Confidence 67888766532 2 457888887 599999993
No 69
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=24.61 E-value=1.7e+02 Score=25.62 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=24.4
Q ss_pred hcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCc
Q psy257 7 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGE 52 (157)
Q Consensus 7 ~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~E 52 (157)
..++||++-. ..+ ..|+-.++..|+|+|.+|+-
T Consensus 341 ~~~~PvivKg----------v~~---~e~A~~a~~aGad~I~vs~h 373 (511)
T 1kbi_A 341 KTKLPIVIKG----------VQR---TEDVIKAAEIGVSGVVLSNH 373 (511)
T ss_dssp HCSSCEEEEE----------ECS---HHHHHHHHHTTCSEEEECCT
T ss_pred HhCCcEEEEe----------CCC---HHHHHHHHHcCCCEEEEcCC
Confidence 4589999862 223 45777888899999999874
No 70
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=24.55 E-value=35 Score=27.47 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=31.2
Q ss_pred hHHHhcCCcEEEeehhhHHhh--hCCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMI--KKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~--~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..|++.|.|||+..|+=.... ...+|..+++.+- .++.+.||.|++
T Consensus 215 ~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~s-g~ie~~aD~vi~ 262 (315)
T 3bh0_A 215 KMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRES-GQLEQDADIIEF 262 (315)
T ss_dssp HHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTT-SHHHHHCSEEEE
T ss_pred HHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhh-hhhHhhCCEEEE
Confidence 457899999999999754332 2345665544432 457778999887
No 71
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=24.34 E-value=61 Score=24.51 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHH
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMH 67 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~ 67 (157)
+.||+...-+ -| ..|+......|+|++++. . +.=+ |.++++.+.
T Consensus 186 ~ipvia~GGI---------~s---~~~~~~~~~~Gad~v~vG-s-al~~-p~~~~~~l~ 229 (234)
T 1yxy_A 186 GIAVIAEGKI---------HS---PEEAKKINDLGVAGIVVG-G-AITR-PKEIAERFI 229 (234)
T ss_dssp TCCEEEESCC---------CS---HHHHHHHHTTCCSEEEEC-H-HHHC-HHHHHHHHH
T ss_pred CCCEEEECCC---------CC---HHHHHHHHHCCCCEEEEc-h-HHhC-hHHHHHHHH
Confidence 6677765442 22 235666666799999983 2 2222 555555443
No 72
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=24.33 E-value=77 Score=24.98 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=32.3
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAM 66 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~ 66 (157)
++.++++|++|.+=|- + +-.++...+..|+|||+- +||-.+.+++
T Consensus 234 v~~~~~~G~~v~~wTv--n-----------~~~~~~~l~~~GVdgIiT-------D~P~~~~~~~ 278 (287)
T 2oog_A 234 THHLKDLGFIVHPYTV--N-----------EKADMLRLNKYGVDGVFT-------NFADKYKEVI 278 (287)
T ss_dssp HHHHHHTTCEECCBCC--C-----------SHHHHHHHHHHTCSEEEE-------SCHHHHHHHH
T ss_pred HHHHHHCCCeEEEEeC--C-----------CHHHHHHHHHcCCCEEEe-------CCHHHHHHHH
Confidence 5788999999998772 1 234566777789999975 5786665544
No 73
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=24.30 E-value=38 Score=28.40 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=23.4
Q ss_pred cCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeee
Q psy257 8 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 8 ~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
.+.|||.+.-+-. -.|+..++..|||+|++
T Consensus 255 ~~ipVia~GGI~~------------~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 255 TNICIIADGGIRF------------SGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SSCEEEEESCCCS------------HHHHHHHHHHTCSEEEE
T ss_pred cCceEEEECCCCC------------HHHHHHHHHcCCCHHhh
Confidence 4778887655432 45999999999999998
No 74
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.75 E-value=41 Score=23.40 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=29.2
Q ss_pred CcEEEeehhhHHhhhC--------CCCCchhhhHHHHHHhhC
Q psy257 10 KPVICATQMLESMIKK--------PRATRAEISDVANAVLDG 43 (157)
Q Consensus 10 kPvi~atq~LesM~~~--------~~ptRaEvsDv~nav~dg 43 (157)
+-++++.++.+.|..+ +..||.|...+.++.+|.
T Consensus 38 ~~CF~GsE~VdWL~~~l~~~~~fg~~~sR~eAv~lgq~Ll~~ 79 (105)
T 2ysr_A 38 GNCFTAGEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKFLKN 79 (105)
T ss_dssp SSCEEHHHHHHHHHHHHHHSSSSTTTCCHHHHHHHHHHHHHT
T ss_pred CccccchHHHHHHHHhcccccccCccCCHHHHHHHHHHHHHC
Confidence 4578899999999985 688999999999998874
No 75
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=23.60 E-value=49 Score=27.91 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=30.9
Q ss_pred hHHHhcCCcEEEeehhhHHhhh--CCCCCchhhhHHHHHHhhCcceeee
Q psy257 3 AKCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCVML 49 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~--~~~ptRaEvsDv~nav~dg~d~imL 49 (157)
..+++.+.|||+..|+=..-.. ..+|..+++.+- .++...||.|++
T Consensus 347 ~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~S-g~ie~~aD~vi~ 394 (444)
T 2q6t_A 347 ALARELGIPIIALSQLSRAVEARPNKRPMLSDLRES-GSIEQDADLVMF 394 (444)
T ss_dssp HHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGG-CTTGGGCSEEEE
T ss_pred HHHHHhCCeEEEEecCCcccccCCCCCCChHHhcch-hHHHHhCCEEEE
Confidence 4578899999999997543332 345654444332 357788999987
No 76
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=23.15 E-value=1.8e+02 Score=23.72 Aligned_cols=26 Identities=42% Similarity=0.505 Sum_probs=16.9
Q ss_pred HHHHHHhhCcceeeecCcccCCCChHHHHHHH
Q psy257 35 DVANAVLDGADCVMLSGETAKGDYPVECVRAM 66 (157)
Q Consensus 35 Dv~nav~dg~d~imLs~ETa~G~~p~~~v~~~ 66 (157)
++-.|+..|+|.|||-. ++.+.++..
T Consensus 205 ea~eA~~aGaD~I~LDn------~~~e~l~~a 230 (285)
T 1o4u_A 205 DALRAVEAGADIVMLDN------LSPEEVKDI 230 (285)
T ss_dssp HHHHHHHTTCSEEEEES------CCHHHHHHH
T ss_pred HHHHHHHcCCCEEEECC------CCHHHHHHH
Confidence 44556667999999943 555544443
No 77
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=22.50 E-value=60 Score=25.54 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=27.0
Q ss_pred ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCc
Q psy257 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGE 52 (157)
Q Consensus 1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~E 52 (157)
++..|+++|||+.+... .-.++...+..|.+.+..+..
T Consensus 202 iv~aa~a~G~~~~v~~~--------------d~~~~~~~~~~G~~~~s~~~d 239 (256)
T 1dxe_A 202 IFNRASAHGKPSGILAP--------------VEADARRYLEWGATFVAVGSD 239 (256)
T ss_dssp HHHHHHHTTCCEEEECC--------------SHHHHHHHHHTTCCEEEEEEH
T ss_pred HHHHHHHhCCceEEecC--------------CHHHHHHHHHcCCCEEEechH
Confidence 46789999999976221 123566678889999888653
No 78
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=22.36 E-value=2.1e+02 Score=22.75 Aligned_cols=16 Identities=44% Similarity=0.499 Sum_probs=12.1
Q ss_pred HHHHHhhCcceeeecC
Q psy257 36 VANAVLDGADCVMLSG 51 (157)
Q Consensus 36 v~nav~dg~d~imLs~ 51 (157)
+-.|+..|+|.|||..
T Consensus 195 ~~~A~~aGaD~I~ld~ 210 (273)
T 2b7n_A 195 AKNAMNAGADIVMCDN 210 (273)
T ss_dssp HHHHHHHTCSEEEEET
T ss_pred HHHHHHcCCCEEEECC
Confidence 4456667999999963
No 79
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=22.20 E-value=1.1e+02 Score=25.53 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=15.9
Q ss_pred hhHHHHHHhhCcceeeec
Q psy257 33 ISDVANAVLDGADCVMLS 50 (157)
Q Consensus 33 vsDv~nav~dg~d~imLs 50 (157)
..|+..++..|||++|+.
T Consensus 290 ~~dv~kal~~GAdaV~iG 307 (380)
T 1p4c_A 290 GSDIVKALALGAEAVLLG 307 (380)
T ss_dssp HHHHHHHHHTTCSCEEES
T ss_pred HHHHHHHHHhCCcHhheh
Confidence 459999999999999994
No 80
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=22.18 E-value=2.5e+02 Score=22.25 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=43.1
Q ss_pred hhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHH-HhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANA-VLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 2 i~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~na-v~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
++.+++.|++|-+..-+-=+-....+-+..++-+++.. ...|+|.|.|. .|.=.-.|.+.-+.+..+.+.
T Consensus 127 i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~-DT~G~~~P~~~~~lv~~l~~~ 197 (298)
T 2cw6_A 127 LKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLG-DTIGVGTPGIMKDMLSAVMQE 197 (298)
T ss_dssp HHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEE-ETTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEec-CCCCCcCHHHHHHHHHHHHHh
Confidence 57788999998643221100001112344556666554 44699999995 566667898888777766554
No 81
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=22.13 E-value=89 Score=26.32 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=26.0
Q ss_pred HhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcc
Q psy257 6 NKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 53 (157)
Q Consensus 6 ~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ET 53 (157)
+..++||++..- .+ ..|.-.++..|+|+|.+||-.
T Consensus 214 ~~~~~PvivK~v----------~~---~e~A~~a~~~GaD~I~vsn~G 248 (352)
T 3sgz_A 214 SITRLPIILKGI----------LT---KEDAELAMKHNVQGIVVSNHG 248 (352)
T ss_dssp HHCCSCEEEEEE----------CS---HHHHHHHHHTTCSEEEECCGG
T ss_pred HhcCCCEEEEec----------Cc---HHHHHHHHHcCCCEEEEeCCC
Confidence 345899998742 22 357888888999999998753
No 82
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=21.67 E-value=1.1e+02 Score=23.14 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=18.6
Q ss_pred hHHHHHHhhCcceeeecCcccC-CC-ChHHHHHHH
Q psy257 34 SDVANAVLDGADCVMLSGETAK-GD-YPVECVRAM 66 (157)
Q Consensus 34 sDv~nav~dg~d~imLs~ETa~-G~-~p~~~v~~~ 66 (157)
.|+..+...|+|++|. |.-.. +. .|.++++.+
T Consensus 208 ~d~~~~~~~Gadgv~v-Gsal~~~~~~~~~~~~~l 241 (253)
T 1thf_D 208 EHFLEAFLAGADAALA-ASVFHFREIDVRELKEYL 241 (253)
T ss_dssp HHHHHHHHTTCSEEEE-SHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHcCChHHHH-HHHHHcCCCCHHHHHHHH
Confidence 4666666679999998 33222 22 344444443
No 83
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.60 E-value=80 Score=26.23 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=24.4
Q ss_pred hHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 3 AKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+.++..++|||+- ...|. .|+..++..|+|+|+++
T Consensus 205 ~l~~~~~~pvi~g----------gi~t~---e~a~~~~~~Gad~i~vg 239 (393)
T 2qr6_A 205 EFIGSLDVPVIAG----------GVNDY---TTALHMMRTGAVGIIVG 239 (393)
T ss_dssp HHHHHCSSCEEEE----------CCCSH---HHHHHHHTTTCSEEEES
T ss_pred HHHHhcCCCEEEC----------CcCCH---HHHHHHHHcCCCEEEEC
Confidence 4455668888872 34443 36777778899999994
No 84
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=21.26 E-value=69 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=21.7
Q ss_pred CCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeec
Q psy257 9 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 50 (157)
Q Consensus 9 ~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs 50 (157)
+.|||...-+-. -.|+..++..|||+||+.
T Consensus 242 ~ipvi~~GGI~~------------~~da~~~l~~GAd~V~vg 271 (311)
T 1jub_A 242 EIQIIGTGGIET------------GQDAFEHLLCGATMLQIG 271 (311)
T ss_dssp TSEEEEESSCCS------------HHHHHHHHHHTCSEEEEC
T ss_pred CCCEEEECCCCC------------HHHHHHHHHcCCCEEEEc
Confidence 567766654322 458888888999999993
No 85
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=20.48 E-value=2.1e+02 Score=21.81 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=29.4
Q ss_pred hHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHH-hhCcceeeecCcccCCCChHHHHHHHH
Q psy257 3 AKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAV-LDGADCVMLSGETAKGDYPVECVRAMH 67 (157)
Q Consensus 3 ~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav-~dg~d~imLs~ETa~G~~p~~~v~~~~ 67 (157)
+..+++..|+++-- ++|+ +.-+..|+.+++... ..|+|+|..|.--..|.+-.+.++.+.
T Consensus 109 ~~v~~a~~pv~vKv-i~e~----~~l~~~~~~~~a~~a~eaGad~I~tstg~~~gga~~~~i~~v~ 169 (225)
T 1mzh_A 109 KEIFRETPSAVHKV-IVET----PYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIK 169 (225)
T ss_dssp HHHHHTCTTSEEEE-ECCG----GGCCHHHHHHHHHHHHHHTCSEEECCCSCSSSCCCHHHHHHHH
T ss_pred HHHHHHhcCceEEE-EEeC----CCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHH
Confidence 34444444776533 2222 223455666666554 459999944321112333445555443
No 86
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=20.46 E-value=1.8e+02 Score=22.86 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=28.9
Q ss_pred HHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHH
Q psy257 35 DVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 72 (157)
Q Consensus 35 Dv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~ 72 (157)
.+..++..|+||+-..-.--..+.|.++++.+..+.++
T Consensus 216 ~i~~~~~aGA~GvsvgraI~~~~dp~~~~~~l~~~v~~ 253 (263)
T 1w8s_A 216 QVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYG 253 (263)
T ss_dssp HHHHHHHTTCCEEEESHHHHTSTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCeEEEEehhhcCCcCHHHHHHHHHHHHhc
Confidence 45566678999988776666778899998888877654
No 87
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=20.36 E-value=1e+02 Score=23.65 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=24.0
Q ss_pred HHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecC
Q psy257 4 KCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51 (157)
Q Consensus 4 ~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ 51 (157)
.++..+.|+|+..-+ .+ ..|+..+...|+|+++|..
T Consensus 69 i~~~~~iPvi~~ggi---------~~---~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 69 VRPLTTLPIIASGGA---------GK---MEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp HGGGCCSCEEEESCC---------CS---THHHHHHHHHTCSEEECCC
T ss_pred HHHhcCCCEEEECCC---------CC---HHHHHHHHHcCCcHhhhhH
Confidence 345567888886442 12 3456677778999999944
No 88
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=20.26 E-value=76 Score=23.67 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=26.9
Q ss_pred hcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHH
Q psy257 7 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAM 66 (157)
Q Consensus 7 ~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~ 66 (157)
..+.|||...-+ -+ ..|+..+...|+|++++- ++.-+ |.+..+.+
T Consensus 173 ~~~ipvia~GGI---------~~---~~~~~~~~~~Gad~v~vG--~al~~-p~~~~~~~ 217 (223)
T 1y0e_A 173 SVDAKVIAEGNV---------IT---PDMYKRVMDLGVHCSVVG--GAITR-PKEITKRF 217 (223)
T ss_dssp HCCSEEEEESSC---------CS---HHHHHHHHHTTCSEEEEC--HHHHC-HHHHHHHH
T ss_pred hCCCCEEEecCC---------CC---HHHHHHHHHcCCCEEEEC--hHHcC-cHHHHHHH
Confidence 346777766543 22 346777777799999993 33333 54444443
No 89
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=20.21 E-value=34 Score=24.34 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=25.3
Q ss_pred EEEeehhhHHhhhCC-CCCchhhhHHHHHHhh
Q psy257 12 VICATQMLESMIKKP-RATRAEISDVANAVLD 42 (157)
Q Consensus 12 vi~atq~LesM~~~~-~ptRaEvsDv~nav~d 42 (157)
+++.+++.+.|+++. ..+|.|..-+++.+++
T Consensus 37 cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~ 68 (109)
T 1uhw_A 37 CLTGSGVIDWLVSNKLVRNRQEGLMISASLLS 68 (109)
T ss_dssp ECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 567788999999877 7789998888888764
Done!