RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy257
(157 letters)
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain. This domain of the
is actually a small beta-barrel domain nested within a
larger TIM barrel. The active site is found in a cleft
between the two domains.
Length = 348
Score = 170 bits (433), Expect = 6e-53
Identities = 60/83 (72%), Positives = 66/83 (79%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+IAKCN GKPVI ATQMLESMI PR TRAE+SDVANAVLDG DCVMLSGETAKG+YPV
Sbjct: 266 LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGNYPV 325
Query: 61 ECVRAMHNTCKEAEAAIWHTKLL 83
E V+AM C EAE A+ H +
Sbjct: 326 EAVKAMARICLEAEKALPHRNVF 348
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer.
Length = 480
Score = 173 bits (441), Expect = 9e-53
Identities = 62/87 (71%), Positives = 68/87 (78%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+IAKCN GKPVI ATQMLESMI PR TRAE+SDVANAVLDG DCVMLSGETAKG YPV
Sbjct: 264 LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPV 323
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELK 87
E V+AM C EAE A+ H L E++
Sbjct: 324 EAVKAMARICLEAEKALSHRVLFNEMR 350
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a
homotetramer. Some forms are active only in the presence
of fructose-1,6-bisphosphate or similar phosphorylated
sugars [Energy metabolism, Glycolysis/gluconeogenesis].
Length = 473
Score = 162 bits (412), Expect = 1e-48
Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MI KCN+ GKPVI ATQML+SMIK PR TRAE+SDVANA+LDG D VMLSGETAKG YPV
Sbjct: 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPV 321
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLSY 105
E V+ M KEAE A+ + LT + + TI ++
Sbjct: 322 EAVKMMAKIAKEAEKALAY---LTNFNDRKNSDPKPSTITEAIAL 363
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 156 bits (396), Expect = 3e-46
Identities = 52/77 (67%), Positives = 57/77 (74%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+I K + GKPVI ATQMLESMI+ PR TRAE+SDVANAVLDG D VMLSGETA G YPV
Sbjct: 266 IIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPV 325
Query: 61 ECVRAMHNTCKEAEAAI 77
E V M KEAE +
Sbjct: 326 EAVATMARIAKEAEKEL 342
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 152 bits (386), Expect = 8e-45
Identities = 57/99 (57%), Positives = 66/99 (66%), Gaps = 6/99 (6%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+I K + GKPVI ATQMLESMI+ PR TRAE+SDVANAVLDG D VMLSGETA G YPV
Sbjct: 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPV 323
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETI 99
E V AM CK AE K + S + +Q++ I
Sbjct: 324 EAVEAMARICKGAE------KEFSINLSKHRLDRQFDRI 356
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase.
Length = 511
Score = 148 bits (375), Expect = 6e-43
Identities = 56/92 (60%), Positives = 65/92 (70%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MI KCN GKPV+ ATQMLESMIK PR TRAE +DVANAVLDG DCVMLSGETA G YP
Sbjct: 284 MIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPE 343
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSI 92
V+ M C+EAEA++ + L E+ +
Sbjct: 344 LAVKTMARICREAEASLDYGALFKEIMRSAPL 375
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 140 bits (354), Expect = 6e-40
Identities = 58/91 (63%), Positives = 63/91 (69%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MI+KCN GKPVI ATQMLESMIK PR TRAE +DVANAVLDG DCVMLSGETA G +PV
Sbjct: 300 MISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGKFPV 359
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVS 91
E V M C EAE I + L + V
Sbjct: 360 EAVNIMAKICFEAETCIDYRVLYHAIHLAVP 390
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional.
Length = 590
Score = 139 bits (353), Expect = 2e-39
Identities = 51/104 (49%), Positives = 65/104 (62%), Gaps = 6/104 (5%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+I K N++GKPVI ATQML+SM + PR TRAE SDVANA+LDG D VMLS ETA GDYPV
Sbjct: 269 LIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPV 328
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLS 104
E V+ M E + + +L++ + TI +S
Sbjct: 329 EAVQTMATIAVRIEKDLPYRDILSKR------PEFTTTITNAIS 366
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional.
Length = 470
Score = 127 bits (321), Expect = 2e-35
Identities = 47/77 (61%), Positives = 55/77 (71%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MI KCN+ K VI ATQML+SMIK PR TRAE DVANA+LDG D VMLSGE+AKG YP+
Sbjct: 263 MIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPL 322
Query: 61 ECVRAMHNTCKEAEAAI 77
E V M C+ + +
Sbjct: 323 EAVSIMATICERTDRVM 339
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional.
Length = 476
Score = 125 bits (317), Expect = 7e-35
Identities = 46/75 (61%), Positives = 53/75 (70%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+I + GKPV+ ATQMLESMI+ P TRAE+SDVA AVLDGAD VMLS ETA G YPV
Sbjct: 260 IIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPV 319
Query: 61 ECVRAMHNTCKEAEA 75
E VR M ++ E
Sbjct: 320 EAVRTMARIIRQVER 334
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional.
Length = 454
Score = 125 bits (314), Expect = 1e-34
Identities = 57/97 (58%), Positives = 67/97 (69%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+I+KCN GKPVICATQMLESM PR TRAE+SDVANAV +GADCVMLSGETAKG YP
Sbjct: 237 LISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPN 296
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYE 97
E V+ M C EA++A+ +K + I E
Sbjct: 297 EVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAE 333
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase.
Length = 581
Score = 102 bits (255), Expect = 5e-26
Identities = 43/77 (55%), Positives = 54/77 (70%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+I +C +GKPVI AT MLESMI P TRAE+SD+A AV +GAD VMLSGETA G +P+
Sbjct: 368 IIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL 427
Query: 61 ECVRAMHNTCKEAEAAI 77
+ V+ MH EA +
Sbjct: 428 KAVKVMHTVALRTEATL 444
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase.
Length = 526
Score = 98.6 bits (246), Expect = 8e-25
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVE 61
+ KCN GKP + T++++SM R TRAE +DVANAVLDGAD ++L ET +G YPVE
Sbjct: 299 LYKCNMAGKPAV-VTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVE 357
Query: 62 CVRAMHNTCKEAE 74
+ + C EAE
Sbjct: 358 TISTVGRICAEAE 370
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated.
Length = 352
Score = 85.4 bits (211), Expect = 2e-20
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MI +CN+ VI ATQML+SM+ TRAE++DV AVLDG + VMLS E+A G++P+
Sbjct: 256 MIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPI 315
Query: 61 ECVRAMHNTCKEAE 74
E V + + AE
Sbjct: 316 ESVSTLRLVSEFAE 329
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit.
Length = 509
Score = 79.8 bits (197), Expect = 4e-18
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 5 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYP 59
C ++ KPVI A+Q+LESMI+ P TRAE++DV+ AV AD +MLSGE+A G YP
Sbjct: 299 CRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLYP 353
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 58.8 bits (143), Expect = 7e-11
Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
Query: 11 PVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVR 64
PVI ATQ+LES+ KK +RAEI+D A A+ A+CVML+ KG + VE VR
Sbjct: 537 PVIWATQVLESLAKKGLPSRAEITDAAMALR--AECVMLN----KGPHIVEAVR 584
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated.
Length = 493
Score = 56.2 bits (136), Expect = 5e-10
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 6/53 (11%)
Query: 11 PVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECV 63
PVI ATQ+LE ++KK +RAE++D A A A+CVML+ KG Y VE V
Sbjct: 420 PVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAV 466
>gnl|CDD|224074 COG1152, CdhA, CO dehydrogenase/acetyl-CoA synthase alpha subunit
[Energy production and conversion].
Length = 772
Score = 30.6 bits (69), Expect = 0.32
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGAD-CVMLSGETAKGDYPV 60
+ + +K+G PVI + M+ P T ++ ++ +++ G V+L A G+ V
Sbjct: 317 LEEASKLGIPVIATNEKG--MLGLPDVTDEDVDEIVESLVSGEPGVVLLDPLKA-GEVAV 373
Query: 61 ECVRAMH 67
E A+
Sbjct: 374 EVAEAVE 380
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 28.4 bits (64), Expect = 1.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 34 SDVANAVLDGADCVMLSGETAKG 56
S+V A++D AD VM +G TA G
Sbjct: 186 SEVGGAIVDNADYVMFTGSTATG 208
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 28.2 bits (64), Expect = 1.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 33 ISDVANAVLDGADCVMLSGETA-KGDYP---VE--CVRAMHNTCKEAEAAIWHTKLLTEL 86
I+D A A+LDG ++LS E A +G YP + R M + H +
Sbjct: 301 IADAARAILDGH--IVLSRELAEQGHYPAIDILASISRVMPDVVSP-----EHRQAARRF 353
Query: 87 KSMVS 91
K ++S
Sbjct: 354 KQLLS 358
>gnl|CDD|165270 PHA02965, PHA02965, hypothetical protein; Provisional.
Length = 466
Score = 27.7 bits (61), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 68 NTCKEAEAAIWHTKLLTELKSMVSITKQ 95
+ K EA I ++ LL +LKS + ITK+
Sbjct: 254 DIYKNIEAFIINSILLEDLKSRLDITKE 281
>gnl|CDD|114995 pfam06306, CgtA, Beta-1,4-N-acetylgalactosaminyltransferase (CgtA).
This family consists of several
beta-1,4-N-acetylgalactosaminyltransferase proteins from
Campylobacter jejuni.
Length = 347
Score = 27.7 bits (61), Expect = 3.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 131 KTSPAWLGGGYKGFIMLQKKSTDP 154
K + A +G G+KG+ +KS DP
Sbjct: 60 KLNKAIIGEGHKGYFNYDEKSKDP 83
>gnl|CDD|178057 PLN02438, PLN02438, inositol-3-phosphate synthase.
Length = 510
Score = 27.0 bits (60), Expect = 4.3
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 66 MHNTCKE---AEAAIWHTKLLTELKSMVSITKQYET-------IPTCLSYMS 107
MHNTC++ A I LL EL + + + + E + T LSY++
Sbjct: 416 MHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEEKFHSFHPVATLLSYLT 467
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.
Length = 956
Score = 27.1 bits (60), Expect = 4.6
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 93 TKQYETIPT----CLSYMSGWRTLNRETSVLLWHYR------IGIRTAKTS--PAWLGGG 140
+ Q + PT C + M G R + ++ + WH R +G++ K +GGG
Sbjct: 385 STQAQQCPTETHICFTRMDGDRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGG 444
Query: 141 Y--KGFIMLQ 148
+ K I+L+
Sbjct: 445 FGSKQDILLE 454
>gnl|CDD|184411 PRK13946, PRK13946, shikimate kinase; Provisional.
Length = 184
Score = 26.8 bits (60), Expect = 4.8
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 26 PRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 76
P+ T A + + V AD + S + K E + A+ ++ EAA
Sbjct: 134 PKETLARLMEERYPVYAEADLTVASRDVPKEVMADEVIEALAAYLEKEEAA 184
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 27.2 bits (61), Expect = 4.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 34 SDVANAVLDGADCVMLSGETAKG 56
V A++D AD +M +G TA G
Sbjct: 222 PVVGTALVDNADYLMFTGSTATG 244
>gnl|CDD|132356 TIGR03313, Se_sel_red_Mo, probable selenate reductase,
molybdenum-binding subunit. Our comparative genomics
suggests this protein family to be a subunit of a
selenium-dependent molybdenum hydroxylase, although the
substrate is not specified. This protein is suggested by
Bebien, et al., to be the molybdenum-binding subunit of
a molydbopterin-containing selenate reductase. Xi, et
al, however, show that mutation of this gene in E. coli
conferred sensitivity to adenine, suggesting a defect in
purine interconversion. This finding, plus homology of
nearby genes in a 23-gene purine catabolism region in E.
coli to xanthine dehydrogase subunits suggests xanthine
dehydrogenase activity.
Length = 951
Score = 27.3 bits (60), Expect = 4.8
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 93 TKQYETIPT----CLSYMSGWRTLNRETSVLLWHYR------IGIRTAKTS--PAWLGGG 140
+ Q + PT C +YM G R + ++ + WH R +G++ K +GGG
Sbjct: 381 STQAQQCPTETHICFTYMDGERLVIHASTQVPWHVRRQVARIVGMKQHKVHVIKERVGGG 440
Query: 141 Y 141
+
Sbjct: 441 F 441
>gnl|CDD|216874 pfam02099, Josephin, Josephin.
Length = 158
Score = 26.2 bits (58), Expect = 5.9
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 14 CATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 54
CA L ++++ P + +++ +A LD + LS E
Sbjct: 7 CAQHCLNNLLQGPYFSEFDLASIAKE-LDQKERNKLSVEHW 46
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 26.5 bits (59), Expect = 6.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Query: 32 EISDVANAVLDGADCVMLSGETAKGDYPVECVRA 65
E+ DVA AV+ G TA GD+ + CVR
Sbjct: 284 ELPDVAGAVVSG---------TASGDWTLSCVRG 308
>gnl|CDD|215345 PLN02641, PLN02641, anthranilate phosphoribosyltransferase.
Length = 343
Score = 26.6 bits (59), Expect = 6.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 17 QMLESMIKKPRATRAEISDVANAVLDGADCVMLSG----ETAKGDYPVECV---RAMHNT 69
Q++ES+I+ T E + +LD AD +S AKG+ E RAM
Sbjct: 6 QLIESLIQGTDLTEEEAEAALDFLLDDADEAQISAFLVLLRAKGETFEEIAGLARAMIKR 65
Query: 70 CKEAEA 75
++ +
Sbjct: 66 ARKVDG 71
>gnl|CDD|217370 pfam03102, NeuB, NeuB family. NeuB is the prokaryotic
N-acetylneuraminic acid (Neu5Ac) synthase. It catalyzes
the direct formation of Neu5Ac (the most common sialic
acid) by condensation of phosphoenolpyruvate (PEP) and
N-acetylmannosamine (ManNAc). This reaction has only
been observed in prokaryotes; eukaryotes synthesise the
9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P
instead of ManNAc. Such eukaryotic enzymes are not
present in this family. This family also contains SpsE
spore coat polysaccharide biosynthesis proteins.
Length = 240
Score = 26.3 bits (59), Expect = 8.1
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAV 40
++ K GKPVI +T M AT EI + +
Sbjct: 104 LLRYIAKTGKPVILSTGM---------ATLEEIEEAVETL 134
>gnl|CDD|163337 TIGR03586, PseI, pseudaminic acid synthase. Members of this family
are included within the larger pfam03102 (NeuB) family.
NeuB itself (TIGR03569) is involved in the biosynthesis
of neuraminic acid by the condensation of
phosphoenolpyruvate (PEP) with N-Acetyl-D-Mannosamine.
In an analagous reaction, this enzyme, PseI , condenses
PEP with 6-deoxy-beta-L-AltNAc4NAc to generate
pseudaminic acid.
Length = 327
Score = 26.1 bits (58), Expect = 8.6
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAV 40
+I K GKP+I +T + AT EI + A
Sbjct: 126 LIRYVAKTGKPIIMSTGI---------ATLEEIQEAVEAC 156
>gnl|CDD|235815 PRK06489, PRK06489, hypothetical protein; Provisional.
Length = 360
Score = 26.1 bits (58), Expect = 8.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 124 RIGIRTAKTSPAWLGGGYK 142
R+ I + + PAW G Y
Sbjct: 201 RMLIESIRNDPAWNNGNYT 219
>gnl|CDD|223228 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase
[Nucleotide transport and metabolism].
Length = 345
Score = 26.0 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 28 ATRAEISDVANAVLDG-------ADCVMLSGETA 54
AT +VA ++ G A C ++ GETA
Sbjct: 107 ATGKLDPEVAAQIVKGIAEGCKQAGCALVGGETA 140
>gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex
component B and related proteins. BamB (YflG) is a
non-essential component of the beta-barrel assembly
machinery (Bam), a multi-subunit complex that inserts
proteins with beta-barrel topology into the outer
membrane. BamB has been found to interact with BamA,
which in turn binds and stabilizes pre-folded
beta-barrel proteins; it has been suggested that BamB
participates in the stabilization.
Length = 358
Score = 26.1 bits (58), Expect = 9.8
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 112 LNRETSVLLWHYRIGIRTAKTSPAWLGGGYKGF 144
L+ T LW + + +SPA G Y
Sbjct: 271 LDASTGDELWSQTVLLGRVLSSPAIYVGVYIYV 303
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.130 0.403
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,423,461
Number of extensions: 607750
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 46
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)