RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy257
(157 letters)
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 188 bits (480), Expect = 8e-59
Identities = 46/93 (49%), Positives = 55/93 (59%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MI KC + K VI AT ML+SMIK PR T AE DVANA+LDG D VMLSGE+AKG YP+
Sbjct: 263 MIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPL 322
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSIT 93
E V M C+ + + + IT
Sbjct: 323 EAVSIMATICERTDRVMNSRLEFNNDNRKLRIT 355
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 188 bits (479), Expect = 2e-58
Identities = 57/88 (64%), Positives = 63/88 (71%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MIAKCN VGKPVI ATQMLESMIK PR TRAE +DVANAVLDG DCVMLSGETA G++PV
Sbjct: 298 MIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVLDGTDCVMLSGETANGEFPV 357
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKS 88
V M C EAE + + L +
Sbjct: 358 ITVETMARICYEAETCVDYPALYRAMCL 385
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 187 bits (478), Expect = 5e-58
Identities = 57/91 (62%), Positives = 65/91 (71%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MI+KCN GKP+I ATQMLESM K PR TRAE++DVANAVLDG DCVMLSGETA G +PV
Sbjct: 307 MISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANAVLDGTDCVMLSGETAGGKFPV 366
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVS 91
E V M C EAEA I + L L + +
Sbjct: 367 EAVTIMSKICLEAEACIDYKLLYQSLVNAIE 397
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 185 bits (473), Expect = 1e-57
Identities = 55/89 (61%), Positives = 65/89 (73%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+I+KCN GKPVICATQMLESM PR TRAE+SDVANAV +GADCVMLSGETAKG YP
Sbjct: 282 LISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPN 341
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSM 89
E V+ M C EA++A+ +K +
Sbjct: 342 EVVQYMARICLEAQSALNEYVFFNSIKKL 370
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 184 bits (470), Expect = 8e-57
Identities = 53/88 (60%), Positives = 63/88 (71%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MI+KCN GKPV+ ATQMLESMIK R TRAE++DVANAVLDG+DCVMLSGETA G +P
Sbjct: 321 MISKCNVAGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVMLSGETANGAFPF 380
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKS 88
+ V M C +AE I + L + S
Sbjct: 381 DAVNVMSRVCAQAETCIDYPVLYHAIHS 408
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 183 bits (467), Expect = 1e-56
Identities = 54/90 (60%), Positives = 64/90 (71%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+IAK N GKPVICATQMLESM PR TRAE+SDV NA+LDGADCVMLSGETAKG+YP+
Sbjct: 283 LIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPI 342
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMV 90
V M T AE AI + ++++
Sbjct: 343 NAVTTMAETAVIAEQAIAYLPNYDDMRNCT 372
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 184 bits (470), Expect = 3e-56
Identities = 55/93 (59%), Positives = 67/93 (72%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+I +CNK+GKPVI ATQML+SM + PRATRAE SDVANA+ DG D VMLSGETA G YP
Sbjct: 283 LIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPE 342
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSIT 93
E V+ M N AEAA + KLL++ +V +
Sbjct: 343 EAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETS 375
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A
1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A*
1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A*
2vgg_A* ...
Length = 550
Score = 181 bits (460), Expect = 2e-55
Identities = 68/93 (73%), Positives = 77/93 (82%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
MI +CN+ GKPVICATQMLESMIKKPR TRAE SDVANAVLDGADC+MLSGETAKGDYP+
Sbjct: 332 MIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPL 391
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSIT 93
E VR H +EAEAAI+H +L EL+ + IT
Sbjct: 392 EAVRMQHLIAREAEAAIYHLQLFEELRRLAPIT 424
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 178 bits (454), Expect = 4e-54
Identities = 51/93 (54%), Positives = 61/93 (65%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
+I K N +GKPVI ATQML+SM + PR TRAE SDVANA+ DG D VMLSGETA G YPV
Sbjct: 264 LIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVANAIFDGTDAVMLSGETAAGQYPV 323
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSIT 93
E V+ MH E A+ H +L++ T
Sbjct: 324 EAVKTMHQIALRTEQALEHRDILSQRTKESQTT 356
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 161 bits (411), Expect = 9e-49
Identities = 32/91 (35%), Positives = 45/91 (49%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
++ K GKP+ ATQ+L+SM P TRAEI+DV G D + L+ ETA G YP+
Sbjct: 273 IVHTSLKYGKPIAVATQLLDSMQSSPIPTRAEINDVFTTASMGVDSLWLTNETASGKYPL 332
Query: 61 ECVRAMHNTCKEAEAAIWHTKLLTELKSMVS 91
V + E I + LL + +
Sbjct: 333 AAVSWLSRILMNVEYQIPQSPLLQNSRDRFA 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 7e-04
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 23/132 (17%)
Query: 34 SDVANAVLDGADCVMLSGETAKGDYPVECVR------AMHNTCKEAEAAIWHTKLLTELK 87
S A V + AD G ++ V +H ++ + ++
Sbjct: 1639 SKAAQDVWNRADNHFKD---TYGFSILDIVINNPVNLTIHFGGEKGK------RIRENYS 1689
Query: 88 SMVSITKQYETIPT-CLSYMSGWRTLNRETSVLLWHYRIGI--RTAKTSPAWLGGGYKGF 144
+M+ +ETI L ++ +N ++ + G+ T T PA F
Sbjct: 1690 AMI-----FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 145 IMLQKKSTDPTD 156
L+ K P D
Sbjct: 1745 EDLKSKGLIPAD 1756
Score = 34.3 bits (78), Expect = 0.013
Identities = 37/214 (17%), Positives = 63/214 (29%), Gaps = 94/214 (43%)
Query: 9 GKPVICATQML----------ESMIKK-----PRATRAEISDVANAVLDGADCVMLSGET 53
G P + ML + + K P + EIS + N GA +++SG
Sbjct: 333 GVP----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVN----GAKNLVVSG-- 381
Query: 54 AKGDYPVECVRAMHNTCKEAEAAI--------------------------WHTKLLTELK 87
P + + ++ T ++A+A +H+ LL
Sbjct: 382 -----PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 88 SM---------VSITKQYETIP---TCLSYMSG--WRTLNRE----------TSVLLWHY 123
+ VS + IP T G R L+ + W
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTF----DGSDLRVLSGSISERIVDCIIRLPVKWE- 491
Query: 124 RIGIRTAKTSPAWL---G-GGYKGFIMLQKKSTD 153
T + + G GG G +L ++ D
Sbjct: 492 ----TTTQFKATHILDFGPGGASGLGVLTHRNKD 521
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase;
HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6
c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A*
1n1g_A*
Length = 366
Score = 27.5 bits (62), Expect = 1.8
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG-----ETAK 55
+IA + PV+ T+ +E R+T +++ L +L+G E A
Sbjct: 109 LIAYAKEKQVPVLVCTKGIE------RSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVAT 162
Query: 56 GDYPVECVRAMHNTCKEAEAA 76
G A + A
Sbjct: 163 GV-FTCVSIA----SADINVA 178
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 27.3 bits (60), Expect = 2.1
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 12/51 (23%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51
M+ + + G VI E P ANA+ GA V +
Sbjct: 173 MVTQLSHAGCRVIA-----EGRYNTPA-------LAANAIEHGAWAVTVGS 211
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 26.1 bits (58), Expect = 5.1
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51
I C++ + ++ + IK D+ A+ GAD VM+ G
Sbjct: 192 IQDCSRADRSIVA-----DGGIKTS-------GDIVKALAFGADFVMIGG 229
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 26.1 bits (57), Expect = 5.8
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 12/50 (24%)
Query: 2 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 51
I K G VI E I P + G +++ G
Sbjct: 179 IEALCKAGIAVIA-----EGKIHSP-------EEAKKINDLGVAGIVVGG 216
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 25.6 bits (56), Expect = 7.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 35 DVANAVLDGADCVML 49
DV A+ GAD V+L
Sbjct: 291 DVVKAIACGADAVVL 305
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase,
potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB:
2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Length = 351
Score = 25.7 bits (57), Expect = 8.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 35 DVANAVLDGADCVMLSG 51
DVA A GAD VML G
Sbjct: 237 DVAKAFGAGADFVMLGG 253
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural
genomics, protein structure initiative; 2.49A
{Chromobacterium violaceum atcc 12472}
Length = 350
Score = 25.7 bits (57), Expect = 8.9
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVML 49
++ + + KPV+ +T A R +I V + +L G D ++
Sbjct: 127 LLERIARSDKPVVASTAG---------ARREDIDKVVSFMLHRGKDLTIM 167
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 25.5 bits (57), Expect = 9.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 35 DVANAVLDGADCVML 49
D+ A+ GAD VML
Sbjct: 342 DIVKAIAAGADAVML 356
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 25.6 bits (57), Expect = 9.9
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 103 LSYMSGWRTLNRET------SVLLWHYRIGIRTAKTSPAWLGGGYK 142
+Y + ++ E S +L H R K + +
Sbjct: 351 PAYNGPFSGISVEYQKRDPDS-ILSHTLGWTRFRKENQWIDRAKLE 395
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.403
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,291,212
Number of extensions: 116791
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 39
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)