RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy257
         (157 letters)



>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
           domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 282

 Score =  135 bits (340), Expect = 2e-40
 Identities = 63/83 (75%), Positives = 71/83 (85%)

Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           +I +CN+ GKPVICATQMLESMIKKPR TRAE SDVANAVLDGADC+MLSGETAKGDYP+
Sbjct: 199 IIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPL 258

Query: 61  ECVRAMHNTCKEAEAAIWHTKLL 83
           E VR  H   +EAEAA++H KL 
Sbjct: 259 EAVRMQHLIAREAEAAMFHRKLF 281


>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
           domain {Leishmania mexicana [TaxId: 5665]}
          Length = 258

 Score =  132 bits (334), Expect = 9e-40
 Identities = 54/77 (70%), Positives = 62/77 (80%)

Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           +I+KCN  GKPVICATQMLESM   PR TRAE+SDVANAV +GADCVMLSGETAKG YP 
Sbjct: 182 LISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPN 241

Query: 61  ECVRAMHNTCKEAEAAI 77
           E V+ M   C EA++A+
Sbjct: 242 EVVQYMARICLEAQSAL 258


>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 265

 Score =  132 bits (334), Expect = 1e-39
 Identities = 54/82 (65%), Positives = 60/82 (73%)

Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           +IAK N  GKPVICATQMLESM   PR TRAE+SDV NA+LDGADCVMLSGETAKG+YP+
Sbjct: 182 LIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPI 241

Query: 61  ECVRAMHNTCKEAEAAIWHTKL 82
             V  M  T   AE AI +   
Sbjct: 242 NAVTTMAETAVIAEQAIAYLPN 263


>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 246

 Score =  111 bits (279), Expect = 1e-31
 Identities = 44/79 (55%), Positives = 52/79 (65%)

Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           MI KC +  K VI AT ML+SMIK PR T AE  DVANA+LDG D VMLSGE+AKG YP+
Sbjct: 165 MIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPL 224

Query: 61  ECVRAMHNTCKEAEAAIWH 79
           E V  M   C+  +  +  
Sbjct: 225 EAVSIMATICERTDRVMNS 243


>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella
           oneidensis [TaxId: 70863]}
          Length = 387

 Score = 25.6 bits (56), Expect = 3.5
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 16  TQMLESMIK-KPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA- 73
           +QML           +  + +      +  D  + +      D+  E ++     C+   
Sbjct: 255 SQMLVDKFLYMMPEDQQILRECMRRP-NLMDDFLQAKGCIHQDWYQENLKLFIEVCELHG 313

Query: 74  EAAIWH 79
           + AI H
Sbjct: 314 QTAIQH 319


>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase
           {Chlorobium tepidum [TaxId: 1097]}
          Length = 240

 Score = 24.7 bits (53), Expect = 4.9
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 11  PVICATQMLESMIKKPRATRAEISDVANAVLDGA 44
           P    T M   +  + +A      D+A  V+   
Sbjct: 187 PGAVYTPMWGKVDDEMQALMMMPEDIAAPVVQAY 220


>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
           subtilis [TaxId: 1423]}
          Length = 251

 Score = 24.8 bits (54), Expect = 5.2
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 15  ATQMLESMIKKPRATRAEI---SDVANAVLDGADCVMLSGETAKGDYPVECVRAM 66
               +    K P    A I    D A A+  GAD V+L+   +  D PV+  RAM
Sbjct: 168 NLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAM 222


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 560,231
Number of extensions: 21710
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 12
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.6 bits)