Query psy2570
Match_columns 440
No_of_seqs 103 out of 131
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 19:33:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 29.3 22 0.00075 32.3 1.9 12 59-71 21-32 (171)
2 2xf7_A GP23.1; viral protein; 26.9 30 0.001 25.8 1.8 33 402-435 5-39 (51)
3 3v5w_G G gamma-I, guanine nucl 21.9 41 0.0014 27.3 1.9 16 412-427 15-30 (77)
4 2a3d_A Protein (de novo three- 19.0 19 0.00066 28.1 -0.5 33 403-436 37-69 (73)
5 3pk1_B Apoptosis regulator BAX 17.9 32 0.0011 24.0 0.4 10 430-439 25-34 (34)
6 1d7q_A Translation initiation 17.8 56 0.0019 29.2 2.1 15 76-90 1-15 (143)
7 1ete_A FLT3 ligand; four-helix 12.6 83 0.0028 27.7 1.7 17 412-428 50-66 (134)
8 3kgk_A Arsenical resistance op 11.8 1.1E+02 0.0038 26.2 2.2 17 62-78 87-103 (110)
9 1got_G GT-gamma; complex (GTP- 11.6 1.1E+02 0.0038 24.3 2.1 16 413-428 20-35 (73)
10 3ktb_A Arsenical resistance op 9.9 1.2E+02 0.0042 25.6 1.9 15 62-76 90-104 (106)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=29.33 E-value=22 Score=32.25 Aligned_cols=12 Identities=50% Similarity=1.096 Sum_probs=10.3
Q ss_pred eeeeCCCHHHHHh
Q psy2570 59 IRYLYPTNDELRT 71 (440)
Q Consensus 59 ~ry~~Pt~~eLr~ 71 (440)
+|| |||||||..
T Consensus 21 fRF-~PTDeELv~ 32 (171)
T 1ut7_A 21 FRF-YPTDEELMV 32 (171)
T ss_dssp EEE-CCCHHHHHH
T ss_pred cee-CCChHHHHH
Confidence 555 999999997
No 2
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=26.89 E-value=30 Score=25.80 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=24.2
Q ss_pred hhhhhhHHHHhhhHHHhHHHHhh--hhCccchHHhh
Q psy2570 402 VLMHGFLWVYLNMAYARVEEQRK--EAGRITNVELQ 435 (440)
Q Consensus 402 ~v~~yhLQaYLnlA~~rve~lkk--EAGRItnvelQ 435 (440)
.+|-||+-+++|=.-- -+.||| ||||||..|--
T Consensus 5 ~L~G~F~D~W~~GT~~-~~~mR~AV~~G~iTQ~E~D 39 (51)
T 2xf7_A 5 LLYGYFLDSWLDGTAS-EELLRVAVNAGDLTQEEAD 39 (51)
T ss_dssp TTHHHHHHHHHHTCCC-HHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHhcchhh-HHHHHHHHhcCcccHHHHH
Confidence 4677888888885433 366776 89999988754
No 3
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=21.87 E-value=41 Score=27.30 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=12.9
Q ss_pred hhhHHHhHHHHhhhhC
Q psy2570 412 LNMAYARVEEQRKEAG 427 (440)
Q Consensus 412 LnlA~~rve~lkkEAG 427 (440)
+--|++-|||||+||+
T Consensus 15 i~q~rk~VeQLr~Ea~ 30 (77)
T 3v5w_G 15 IAQARKLVEQLKMEAN 30 (77)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456778999999997
No 4
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=18.97 E-value=19 Score=28.11 Aligned_cols=33 Identities=36% Similarity=0.388 Sum_probs=26.7
Q ss_pred hhhhhHHHHhhhHHHhHHHHhhhhCccchHHhhh
Q psy2570 403 LMHGFLWVYLNMAYARVEEQRKEAGRITNVELQK 436 (440)
Q Consensus 403 v~~yhLQaYLnlA~~rve~lkkEAGRItnvelQr 436 (440)
-|-.-||+|-.-..-.+|.+||||.-|.. |+|.
T Consensus 37 afeselqaykgkgnpevealrkeaaaird-elqa 69 (73)
T 2a3d_A 37 AFESELQAYKGKGNPEVEALRKEAAAIRD-ELQA 69 (73)
T ss_dssp HHHHHHHHSSSCCSSTTTHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHH-HHHH
Confidence 35566899999999999999999998864 6663
No 5
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=17.92 E-value=32 Score=24.01 Aligned_cols=10 Identities=40% Similarity=0.710 Sum_probs=7.3
Q ss_pred chHHhhhhhc
Q psy2570 430 TNVELQKKVN 439 (440)
Q Consensus 430 tnvelQrkV~ 439 (440)
.|.|+|++|+
T Consensus 25 ~N~ELQrmi~ 34 (34)
T 3pk1_B 25 SNMELQRMIA 34 (34)
T ss_dssp HHHHHHHCC-
T ss_pred ccHHHHHhhC
Confidence 4888998874
No 6
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=17.76 E-value=56 Score=29.17 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=9.2
Q ss_pred CCcccccccCccccc
Q psy2570 76 PKERSKSKRNSKEKK 90 (440)
Q Consensus 76 ~k~k~k~K~~~k~r~ 90 (440)
||.|+||.|+++++|
T Consensus 1 p~~~gkggk~~~r~K 15 (143)
T 1d7q_A 1 PKNKGKGGKNRRRGK 15 (143)
T ss_dssp CCCCCSSSSSSCCCC
T ss_pred CCCCCCCCccccccc
Confidence 456677776655444
No 7
>1ete_A FLT3 ligand; four-helix bundle, cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qs7_A* 3qs9_A
Probab=12.57 E-value=83 Score=27.66 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.1
Q ss_pred hhhHHHhHHHHhhhhCc
Q psy2570 412 LNMAYARVEEQRKEAGR 428 (440)
Q Consensus 412 LnlA~~rve~lkkEAGR 428 (440)
|-+||+|++++|.=||.
T Consensus 50 L~lAqrwm~rLk~vaGs 66 (134)
T 1ete_A 50 LVLAQRWMERLKTVAGS 66 (134)
T ss_dssp HHHHHHHHHHHHTTBCH
T ss_pred HHHHHHHHHHHHHhhhH
Confidence 67899999999998884
No 8
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=11.83 E-value=1.1e+02 Score=26.15 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=14.9
Q ss_pred eCCCHHHHHhhhCCCCc
Q psy2570 62 LYPTNDELRTLAGVPKE 78 (440)
Q Consensus 62 ~~Pt~~eLr~lag~~k~ 78 (440)
.|||.+||.+++|.+.+
T Consensus 87 ~yPt~eEl~~~lgi~~~ 103 (110)
T 3kgk_A 87 RYPKRAELARWFGIPLD 103 (110)
T ss_dssp SCCCHHHHHHHHTCCCC
T ss_pred cCCCHHHHHHHhCCCcc
Confidence 47999999999999764
No 9
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=11.61 E-value=1.1e+02 Score=24.26 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=12.5
Q ss_pred hhHHHhHHHHhhhhCc
Q psy2570 413 NMAYARVEEQRKEAGR 428 (440)
Q Consensus 413 nlA~~rve~lkkEAGR 428 (440)
.-+++-+||||+|++|
T Consensus 20 ~~lr~~veqLr~el~~ 35 (73)
T 1got_G 20 DKLKMEVDQLKKEVTL 35 (73)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3456678999999986
No 10
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=9.86 E-value=1.2e+02 Score=25.65 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=13.2
Q ss_pred eCCCHHHHHhhhCCC
Q psy2570 62 LYPTNDELRTLAGVP 76 (440)
Q Consensus 62 ~~Pt~~eLr~lag~~ 76 (440)
.|||.+||.+++|..
T Consensus 90 ~yPt~eEl~~~lgi~ 104 (106)
T 3ktb_A 90 TYPTTKQMSEWTGVN 104 (106)
T ss_dssp SCCCHHHHHHHHCCC
T ss_pred cCCCHHHHHHHhCCC
Confidence 479999999999974
Done!