Query psy2570
Match_columns 440
No_of_seqs 103 out of 131
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 19:34:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2570.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2570hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gg2g_ a.137.3.1 (G:) Transdu 42.8 5.7 0.00041 28.3 2.1 16 413-428 3-18 (54)
2 d1tbge_ a.137.3.1 (E:) Transdu 11.6 44 0.0032 24.6 1.6 14 414-427 14-27 (68)
3 d1w85i_ a.9.1.1 (I:) E3/E1 bin 11.4 40 0.0029 22.5 1.2 16 425-440 27-42 (42)
4 d1etea_ a.26.1.2 (A:) Flt3 lig 8.8 66 0.0048 26.2 1.8 17 412-428 50-66 (134)
5 d1ut7a_ b.143.1.1 (A:) No apic 8.1 61 0.0045 26.5 1.4 10 62-71 23-32 (166)
6 d1irqa_ a.43.1.4 (A:) Omega tr 7.6 68 0.005 21.8 1.1 15 2-16 27-41 (48)
7 d1vp7a_ a.7.13.1 (A:) Exonucle 6.6 2.7E+02 0.02 19.7 4.3 41 386-426 22-64 (68)
8 d1v5ua_ b.55.1.1 (A:) SET bind 6.0 94 0.0069 22.1 1.4 20 49-68 26-48 (117)
9 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 5.2 2.1E+02 0.015 20.3 2.9 30 410-439 9-38 (80)
10 d1ydea1 c.2.1.2 (A:4-253) Reti 4.9 1.6E+02 0.012 24.9 2.3 31 402-432 106-136 (250)
No 1
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=42.83 E-value=5.7 Score=28.30 Aligned_cols=16 Identities=31% Similarity=0.191 Sum_probs=13.6
Q ss_pred hhHHHhHHHHhhhhCc
Q psy2570 413 NMAYARVEEQRKEAGR 428 (440)
Q Consensus 413 nlA~~rve~lkkEAGR 428 (440)
.-|++-|||||+|+++
T Consensus 3 ~q~rk~VeqLr~e~~~ 18 (54)
T d1gg2g_ 3 AQARKLVEQLKMEANI 18 (54)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4477889999999996
No 2
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.58 E-value=44 Score=24.61 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=11.8
Q ss_pred hHHHhHHHHhhhhC
Q psy2570 414 MAYARVEEQRKEAG 427 (440)
Q Consensus 414 lA~~rve~lkkEAG 427 (440)
-++.-|||||+||+
T Consensus 14 ~lk~~VeQLr~Ea~ 27 (68)
T d1tbge_ 14 KLKMEVDQLKKEVT 27 (68)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45778999999997
No 3
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.38 E-value=40 Score=22.52 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=12.6
Q ss_pred hhCccchHHhhhhhcC
Q psy2570 425 EAGRITNVELQKKVNG 440 (440)
Q Consensus 425 EAGRItnvelQrkV~~ 440 (440)
..||||..|+++-++|
T Consensus 27 ~~GRItk~DV~~~i~G 42 (42)
T d1w85i_ 27 KNGRVLKEDIDAFLAG 42 (42)
T ss_dssp GGGCCCHHHHHHHHCC
T ss_pred CCCcEeHHHHHHHhCc
Confidence 4588888888887766
No 4
>d1etea_ a.26.1.2 (A:) Flt3 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.77 E-value=66 Score=26.16 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.2
Q ss_pred hhhHHHhHHHHhhhhCc
Q psy2570 412 LNMAYARVEEQRKEAGR 428 (440)
Q Consensus 412 LnlA~~rve~lkkEAGR 428 (440)
|-+|++|+++|+-=||.
T Consensus 50 L~laqr~~~rl~~VAGs 66 (134)
T d1etea_ 50 LVLAQRWMERLKTVAGS 66 (134)
T ss_dssp HHHHHHHHHHHHTTBCH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 67999999999998884
No 5
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.14 E-value=61 Score=26.52 Aligned_cols=10 Identities=50% Similarity=1.022 Sum_probs=8.9
Q ss_pred eCCCHHHHHh
Q psy2570 62 LYPTNDELRT 71 (440)
Q Consensus 62 ~~Pt~~eLr~ 71 (440)
-||||+||..
T Consensus 23 F~PTDeELv~ 32 (166)
T d1ut7a_ 23 FYPTDEELMV 32 (166)
T ss_dssp ECCCHHHHHH
T ss_pred cCCCcHHHHH
Confidence 4899999986
No 6
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=7.59 E-value=68 Score=21.76 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=12.3
Q ss_pred chhhhhhhhhhhhhh
Q psy2570 2 NIKQVMDNQIRAKLY 16 (440)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (440)
|.|+|||...|.++-
T Consensus 27 nvkevm~~~l~~~~~ 41 (48)
T d1irqa_ 27 NVKEVMDQALEEYIR 41 (48)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 789999998887753
No 7
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=6.63 E-value=2.7e+02 Score=19.71 Aligned_cols=41 Identities=15% Similarity=-0.013 Sum_probs=29.6
Q ss_pred hhhcchhHHHHHHHhH--hhhhhhHHHHhhhHHHhHHHHhhhh
Q psy2570 386 KEAGRITNVELQKKGD--VLMHGFLWVYLNMAYARVEEQRKEA 426 (440)
Q Consensus 386 fEagRI~~V~lq~~lr--~v~~yhLQaYLnlA~~rve~lkkEA 426 (440)
=|+|-+..=+....-. .-.-.+||.-|+-|..||+.+..+.
T Consensus 22 LE~g~l~Leesl~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~~ 64 (68)
T d1vp7a_ 22 MENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDL 64 (68)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4677777766666654 2223459999999999999998763
No 8
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.02 E-value=94 Score=22.08 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=12.8
Q ss_pred eeeE-Eeccc--eeeeeCCCHHH
Q psy2570 49 ASFW-LLRAG--LIRYLYPTNDE 68 (440)
Q Consensus 49 ~r~l-Lc~~g--L~ry~~Pt~~e 68 (440)
-||+ |++++ |++|.+|.+.+
T Consensus 26 kR~fvL~~~~~~L~~~~~~~~~~ 48 (117)
T d1v5ua_ 26 ARWFVLDKTKHQLRYYDHRMDTE 48 (117)
T ss_dssp EEEEEEETTTTEEEEESSSSCSS
T ss_pred EEEEEEeCCCCEEEecccccccC
Confidence 3665 44333 88998887654
No 9
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.23 E-value=2.1e+02 Score=20.34 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=25.0
Q ss_pred HHhhhHHHhHHHHhhhhCccchHHhhhhhc
Q psy2570 410 VYLNMAYARVEEQRKEAGRITNVELQKKVN 439 (440)
Q Consensus 410 aYLnlA~~rve~lkkEAGRItnvelQrkV~ 439 (440)
||+--.++.-++++.|.+.+.+.||.+.|.
T Consensus 9 Ay~lF~~~~r~~~~~~~p~~~~~eisk~~g 38 (80)
T d1gt0d_ 9 AFMVWSRGQRRKMAQENPKMHNSEISKRLG 38 (80)
T ss_dssp HHHHHHHHHHHHHHTTSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566667777799999999999999988764
No 10
>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.88 E-value=1.6e+02 Score=24.92 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=22.3
Q ss_pred hhhhhhHHHHhhhHHHhHHHHhhhhCccchH
Q psy2570 402 VLMHGFLWVYLNMAYARVEEQRKEAGRITNV 432 (440)
Q Consensus 402 ~v~~yhLQaYLnlA~~rve~lkkEAGRItnv 432 (440)
.++...+.+..++++.-++.|||..|+|-|+
T Consensus 106 ~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~i 136 (250)
T d1ydea1 106 QLLELNLLGTYTLTKLALPYLRKSQGNVINI 136 (250)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHhhhhHHHHHHHhhHHHHhCCCCCccc
Confidence 3444556666778888888888878998764
Done!