RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2570
         (440 letters)



>gnl|CDD|220665 pfam10268, Tmemb_161AB, Predicted transmembrane protein 161AB.
           Transmemb_161AB is a family of conserved proteins found
           from worms to humans. Members are putative transmembrane
           proteins but otherwise the function is not known.
          Length = 486

 Score =  333 bits (856), Expect = e-110
 Identities = 158/401 (39%), Positives = 218/401 (54%), Gaps = 111/401 (27%)

Query: 49  ASF--WLL-RAGLIRYLYPTNDELRTLAGVPKERSKSKRNSKEKKYERNGSGDQFSQSKE 105
            SF  WLL    L RYL+PT DELR LAG  +++ K +R+ +      NG  +      +
Sbjct: 24  YSFARWLLCNGSLYRYLHPTEDELRALAG-KQKKPKGRRDRRA-----NGHAEG-----K 72

Query: 106 TFHVPKNINLELQSAKITSLDVVHLRYYSEYQWLLDYALYSLFVYTLTEVYTSFIPLDHE 165
            F +PK+I+L+L++  +T +D + LRY++EYQWL+D+A+YS  VY +TEVY   +P   E
Sbjct: 73  PFTIPKDIDLQLETYPVTEVDALVLRYFTEYQWLVDFAVYSTIVYLVTEVYYYVMPPSKE 132

Query: 166 INLSMLWCLVVQCFTLKILFTLTLEYFKGEESVGERSTVIVTGFAYLVIAMMILIVDEAK 225
           +N+S++WCL+V  F LK+LF+LT  YF  EE                             
Sbjct: 133 VNISVVWCLLVIFFALKVLFSLTSHYFSSEEG---------------------------- 164

Query: 226 LETPLTILFTLTLEYFKGEESVGERSTVIVTGFAYLVIAMMILIVDEAKLETGLHSAYAS 285
                                 GERS  I  GF YL+IAM++LIV E  LE GL   YAS
Sbjct: 165 ----------------------GERSVCITFGFLYLLIAMIVLIVRERYLEFGLEPGYAS 202

Query: 286 FNESAATFLHNQGLNSEGPASKIIINFCIAIWCALIGALFTFPGLRMARMHWDSLK---- 341
           F+ +A  FL  QGL S GPASK+++ F +A++C+L+GAL TFPGLR+A+MH D+LK    
Sbjct: 203 FSTNAEDFLEKQGLESSGPASKLVVKFFLAVFCSLLGALLTFPGLRLAQMHLDALKMCAD 262

Query: 342 -------------------------------------------LTESGFDSLRLVLIVVL 358
                                                      ++ S FD+LRL LIVVL
Sbjct: 263 RPMLQLLLHVSFLLPLFIVVLWIKPIARDYLTNPPFGKMSVPLMSLSAFDTLRLWLIVVL 322

Query: 359 ILQRLALMPIYLQAYLNMAYARVEEQRKEAGRITNVELQKK 399
            + R ALM  +LQAYLN+AY +VE+ +KEAGRI+NVE+Q+K
Sbjct: 323 CVLRFALMRSHLQAYLNLAYDKVEQMKKEAGRISNVEIQRK 363



 Score = 35.1 bits (81), Expect = 0.078
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 6/47 (12%)

Query: 15  LYIIFDMWMRKILFTLTLEYFKGEESVGERSTVI--ASFWLLRAGLI 59
           L I F +   K+LF+LT  YF  EE  GERS  I     +LL A ++
Sbjct: 142 LVIFFAL---KVLFSLTSHYFSSEEG-GERSVCITFGFLYLLIAMIV 184


>gnl|CDD|238138 cd00226, PRCH, Photosynthetic reaction center (RC) complex,
          subunit H;  RC is an integral membrane protein-pigment
          complex which catalyzes light-induced reduction of
          ubiquinone to ubiquinol, generating a transmembrane
          electrochemical gradient of protons used to produce ATP
          by ATP synthase. Subunit H is positioned mainly in the
          cytoplasm with one transmembrane alpha helix. Provides
          proton transfer pathway (water channels) connecting the
          terminal quinone electron acceptor of RC, to the
          aqueous phase. Found in photosynthetic bacteria: alpha,
          beta, and gamma proteobacteria.
          Length = 246

 Score = 30.9 bits (70), Expect = 1.2
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 8/40 (20%)

Query: 45 STVIASFWLLRAGLIRYL--------YPTNDELRTLAGVP 76
            VI +FW+  AGLI YL        YP  D     +   
Sbjct: 14 QLVIYAFWIFFAGLIYYLRRENMREGYPLEDPDGGPSENG 53


>gnl|CDD|193513 cd03893, M20_Dipept_like, M20 Dipeptidases.  Peptidase M20 family,
           dipeptidase-like subfamily. This group contains a large
           variety of enzymes, including cytosolic nonspecific
           dipeptidase (CNDP), Xaa-methyl-His dipeptidase
           (anserinase), canosinase, DUG2 type proteins, as well as
           many proteins inferred by homology to be dipeptidases.
           These enzymes have been shown to act on a wide range of
           dipeptides, but not larger peptides. For example,
           anserinase mainly catalyzes the hydrolysis of
           N-alpha-acetylhistidine while carnosinase degrades
           beta-alanyl-L-histidine. Substrates of CNDP are varied
           and not limited to Xaa-His dipeptides. DUG2 proteins
           contain a metallopeptidase domain and a large N-terminal
           WD40 repeat region, and are involved in the alternative
           pathway of glutathione degradation.
          Length = 428

 Score = 29.9 bits (68), Expect = 2.6
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 376 MAYARVEEQRKEAGRITNVELQKKGDVLMHGFLWVY 411
           + Y   EE R EAG +  VEL   G +     LW  
Sbjct: 241 VDYPE-EEFRAEAGVLDGVELAGTGSIADR--LWAK 273


>gnl|CDD|171495 PRK12434, PRK12434, tRNA pseudouridine synthase A; Reviewed.
          Length = 245

 Score = 29.0 bits (65), Expect = 4.5
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 58  LIRYLY---PTNDELRTLAGVPKERSKSKRNSKEKKYE----RNGSGDQFSQSKETFHVP 110
           + +YL    P +  +  +  V  ER  ++ N K K Y          + F + K + HV 
Sbjct: 76  IKKYLNEYLPNDIVVTNVEEVD-ERFHARYNVKSKTYLYKIWNEKFHNVFMR-KYSMHVN 133

Query: 111 KNINLE 116
           + ++++
Sbjct: 134 EKLDVK 139


>gnl|CDD|144538 pfam00981, Rota_NS53, Rotavirus RNA-binding Protein 53 (NS53).
           This protein is also known as NSP1. NS53 is encoded by
           gene 5. It is made in low levels in the infected cells
           and is a component of early replication. The protein is
           known to accumulate on the cytoskeleton of the infected
           cell. NS53 is an RNA binding protein that contains a
           characteristic cysteine rich region.
          Length = 488

 Score = 28.8 bits (65), Expect = 5.9
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 157 TSFIPLDHEINLSMLWCLVVQCFTLKILFTLTLEYFK 193
             ++  +HEIN   L+ ++ Q    ++ F LTL   K
Sbjct: 403 VEYVLFNHEINWE-LYNVIKQILNGEVPFILTLNDVK 438


>gnl|CDD|212581 cd11708, DHR2_DOCK5, Dock Homology Region 2, a GEF domain, of Class
           A Dedicator of Cytokinesis 5.  Dock5 is an atypical
           guanine nucleotide exchange factor (GEF) that lacks the
           conventional Dbl homology (DH) domain. As a GEF, it
           activates small GTPases by exchanging bound GDP for free
           GTP. It functions upstream of Rac1 to regulate
           osteoclast function. DOCK proteins are divided into four
           classes (A-D) based on sequence similarity and domain
           architecture; class A includes Dock1, 2 and 5. All DOCKs
           contain two homology domains: the DHR-1 (Dock homology
           region-1), also called CZH1 (CED-5, Dock180, and
           MBC-zizimin homology 1), and DHR-2 (also called CZH2 or
           Docker). The DHR-1 domain binds
           phosphatidylinositol-3,4,5-triphosphate. This alignment
           model represents the DHR-2 domain of Dock5, which
           contains the catalytic GEF activity for Rac and/or
           Cdc42. Class A DOCKs, like Dock5, are specific GEFs for
           Rac and they contain an SH3 domain at the N-terminal
           region and a PxxP motif at the C-terminus.
          Length = 400

 Score = 28.8 bits (64), Expect = 6.5
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 135 EYQWLLDYALYSLFVYTLTEVYTSFIPLDHEINLSMLWCLVVQCFTLKILFTLTLEY 191
           EY+ L D++L  L  +   E  TS  P   EI  S      VQCFT+K +  L   Y
Sbjct: 150 EYERLEDFSLKLLTQFPNAEKMTSTSPPGDEIKSSTKQ--YVQCFTVKPVMNLPSHY 204


>gnl|CDD|217185 pfam02685, Glucokinase, Glucokinase.  This is a family of
           glucokinases or glucose kinases EC:2.7.1.2. These
           enzymes phosphorylate glucose using ATP as a donor to
           give glucose-6-phosphate and ADP.
          Length = 316

 Score = 28.7 bits (65), Expect = 7.2
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 15/75 (20%)

Query: 283 YASFNESAATFLHNQGLNSEGPASKIIINFCIAIWCALIGALFTFPGLRMARMHW----D 338
           Y S  E+   +L         P        C A+   + G        R+  + W    +
Sbjct: 35  YPSLEEALQDYLAEADAGVARPRHA-----CFAVAGPVDGDEV-----RLTNLPWVISIE 84

Query: 339 SLKLTESGFDSLRLV 353
            L+    G D++ L+
Sbjct: 85  ELR-AALGLDAVHLI 98


>gnl|CDD|236636 PRK09950, PRK09950, putative transporter; Provisional.
          Length = 506

 Score = 28.6 bits (64), Expect = 8.4
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 9/52 (17%)

Query: 167 NLSMLWCLVVQCFTLKILFT-LTLEYFKGEESVGERSTVIVTGFAYLVIAMM 217
            L + WC+V+    L ILFT  +L+  K        +TV++T   +LVI ++
Sbjct: 444 GLRLFWCVVITLIPLSILFTGASLDTMK--------TTVVLTALPFLVILLI 487


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,328,325
Number of extensions: 2204950
Number of successful extensions: 1871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1864
Number of HSP's successfully gapped: 40
Length of query: 440
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 340
Effective length of database: 6,502,202
Effective search space: 2210748680
Effective search space used: 2210748680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.0 bits)