RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2570
(440 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 4e-04
Identities = 82/467 (17%), Positives = 124/467 (26%), Gaps = 200/467 (42%)
Query: 12 RAKLYIIFDMWMRKILFTLTLEYFKGEESVGERSTVIASFWLLRAGLI-RYLYPTNDELR 70
A+L IF G G+ G Y +ELR
Sbjct: 153 NAQLVAIF-----------------G----GQ-------------GNTDDYF----EELR 174
Query: 71 TLAGVPKERSKSKRNSKEKKYERNGS--GDQFSQSKETFHVPKNINLELQSAKITSLDVV 128
L Y+ GD S ET L + V
Sbjct: 175 DL------------------YQTYHVLVGDLIKFSAET--------LSELIRTTLDAEKV 208
Query: 129 HLRYYSEYQWL--------LDYALYSLFVYTLTEVYTSFIPLDHEINLSMLWCLVVQCFT 180
+ + +WL DY L + S PL I + L VV
Sbjct: 209 FTQGLNILEWLENPSNTPDKDY---------LLSIPISC-PL---IGVIQLAHYVVTAKL 255
Query: 181 LKILFTLTLEYFKGEESVGERSTVIVTGFAYLVIAMMILIVDEAK-----LETPLTILFT 235
L Y KG +T G LV A+ I D + + +T+LF
Sbjct: 256 LGFTPGELRSYLKG-------ATGHSQG---LVTAVAIAETDSWESFFVSVRKAITVLF- 304
Query: 236 LTLEYFKGEESVGERSTVIVTGFAYLVIAMMILIVDEAKLETGLHSAYASFNESAATF-L 294
+G R AY ++ I++++ LE E + L
Sbjct: 305 ----------FIGVRCYE-----AYPNTSLPPSILEDS-LENN---------EGVPSPML 339
Query: 295 HNQGL------------NSEGPASKIIINFCIAIWCALI-GALFTFPGLRMARMHWDSLK 341
L NS PA K + I +L+ GA +L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQ-----VEI--SLVNGA--------------KNLV 378
Query: 342 LTESGF-DSLRLVLIVVLILQRLALMPIYLQAYLNMAYARVE-EQRKEAGRITNVELQKK 399
++ G SL + L L++ Q +R+ +RK
Sbjct: 379 VS--GPPQSLYG---LNLTLRKAKAPSGLDQ-------SRIPFSERKL------------ 414
Query: 400 GDVLMHGFLWV-------YLNMAYARVEEQRKEAG-RITNVELQKKV 438
+ FL V L A + + + ++Q V
Sbjct: 415 --KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 30.0 bits (67), Expect = 1.8
Identities = 40/204 (19%), Positives = 59/204 (28%), Gaps = 82/204 (40%)
Query: 42 GERSTVIASFWLLRAGLIRYLYPTNDELRTLAGVPKERSKSKRNSKEKKYERNGSGDQ-- 99
G ++ V++ G + LY N LR K+K S DQ
Sbjct: 373 GAKNLVVS-------GPPQSLYGLNLTLR----------KAKAPSGL---------DQSR 406
Query: 100 --FSQSKET-----------FHVP------KNINLELQSAKITSLDVVHLRY--YSEYQW 138
FS+ K FH IN +L + S + ++ Y +
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV-SFNAKDIQIPVYDTFDG 465
Query: 139 ----LLDYALYSLFVYTLTEVYTSFIPLDHEINLSMLWCLVVQCFTLKIL-F-------- 185
+L ++ V + + P+ W Q IL F
Sbjct: 466 SDLRVLSGSISERIVDCIIRL-----PVK--------WETTTQFKATHILDFGPGGASGL 512
Query: 186 -TLTLEYFKGEESVGERSTVIVTG 208
LT G G R VIV G
Sbjct: 513 GVLTHRNKDGT---GVR--VIVAG 531
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 129
Score = 31.9 bits (72), Expect = 0.16
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 18/92 (19%)
Query: 123 TSLDVVHLRYYSEYQWLLDYALYSLFVYTLTEVYTSFIPLDHEINLSMLWCLVV------ 176
TS D + R+Y W LD +LF Y IPL EI L +
Sbjct: 18 TSRDNLRKRHY----WRLDSKCLTLFQNESGSKYYKEIPL-SEI-LRISSPRDFTNISQG 71
Query: 177 ---QCFTLKILFTLTLEYFKGEESVGERSTVI 205
CF + T T+ YF GE + +
Sbjct: 72 SNPHCFEII---TDTMVYFVGENNGDSSHNPV 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 1.8
Identities = 52/419 (12%), Positives = 129/419 (30%), Gaps = 110/419 (26%)
Query: 2 NIKQVMDNQIRAKLY-----IIFDMWMRKIL--FTL---TLEYFKGEESVGERSTVIASF 51
+I+ + +++K Y ++ ++ K F L L + R + F
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--------LTTRFKQVTDF 280
Query: 52 WLLRAGLIRYLYPTNDELRTLAGVPKERSKSKRNSKE--KKYERNGSGDQFSQSKETFHV 109
+ + TL + K KY D + T
Sbjct: 281 ---LSAATTTHISLDHHSMTL---------TPDEVKSLLLKYLDCRPQDLPREVLTTN-- 326
Query: 110 PKNINLELQSAKITSLDVVHLRYYSEYQW-----LLDYALYSLFVYTLTEVYTSF----- 159
P+ +++ A+ + + +++ +L L +++
Sbjct: 327 PRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 160 ---IPLDHEINLSMLWCLVVQCFTLKILFTLTLEYFKGEESVGERSTVIVTGFAYLVIAM 216
IP I LS++W V++ + ++ L + +++ I++
Sbjct: 384 SAHIP---TILLSLIWFDVIKSDVMVVVNKL------------HKYSLVEKQPKESTISI 428
Query: 217 MILIVDEAKLETPLTILFTLTLEYFKGEESV--GERSTVIVTGFAYLVIAMMILIVDEAK 274
+ ++ L ++++ ++ + + + Y I + ++ +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 275 LETGLHSAYASFNESAATFLHNQGLNSEGPASKIIINFCIAIWCALIGALFTFPGLRMAR 334
T + F FL + + + A W A L T L+ +
Sbjct: 489 RMTLFRMVFLDFR-----FLEQK-IRHDSTA-----------WNASGSILNTLQQLKFYK 531
Query: 335 MHWDSLKLTESGFDSLRLV--LIVVL--------------ILQRLALMP----IYLQAY 373
+ + ++ RLV ++ L +L+ +ALM I+ +A+
Sbjct: 532 PY-----ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIFEEAH 584
>3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase,
magnesium binding, enzyme function initiative, enolase,
isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A
4dhg_A
Length = 441
Score = 29.7 bits (67), Expect = 2.0
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 114 NLELQSAKITSLDVVHLRYYSEYQWLLDYALYSLFVYTLTEVYTS 158
NL QS I + V + + + T+ EV T
Sbjct: 17 NLYFQSMLIREVRVTPVAFRDPPLLNAAGVHQPWALRTIVEVVTD 61
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus
thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Length = 135
Score = 28.2 bits (63), Expect = 2.7
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 74 GVPKERSKSKRNSKEKKYERNGSGDQFSQSKETFHVPKNINLELQSAKITSLDVVH 129
G + +++ + +Y F VP+ + + ITS DV+H
Sbjct: 29 GPWADPAQAVVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFK---ITSPDVIH 81
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 3.3
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 15/62 (24%)
Query: 382 EEQRK------EAGRITNVELQKKGDVLMHGFLWVYLNMAYARVEEQRKEAGRITNVELQ 435
EEQRK A ++ E ++K + + R EQ E +I N
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEW--------NQRQSEQ-VEKNKINNRIAD 142
Query: 436 KK 437
K
Sbjct: 143 KA 144
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain,
lipid cubic phase, monoolein, peroxide, electron
transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus
thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B*
3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 3qjs_B* 3bvd_B*
2qpe_B* 3qjt_B* 3eh5_B* 3eh3_B* 3eh4_B*
Length = 168
Score = 27.5 bits (61), Expect = 6.7
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 88 EKKYERNGSGDQFSQSKETFHVPKNINLELQSAKITSLDVVH 129
+Y F VP+ + + ITS DV+H
Sbjct: 76 PNQYTVYVLAFAFGYQPNPIEVPQGAEIVFK---ITSPDVIH 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.398
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,543,060
Number of extensions: 384776
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 11
Length of query: 440
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 344
Effective length of database: 4,021,377
Effective search space: 1383353688
Effective search space used: 1383353688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)