RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2570
         (440 letters)



>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 113

 Score = 27.2 bits (60), Expect = 1.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 41 VGERSTVIASFWLLRAGLIRYLYPTNDELRTLAGV 75
          VG R  V A    LR G + Y+  T+ +     GV
Sbjct: 35 VGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGV 69


>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
           {Archaeon Methanobacterium thermoautotrophicum [TaxId:
           145262]}
          Length = 247

 Score = 26.3 bits (58), Expect = 7.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 329 GLRMARMHWDSLKLTESG--FDSLR 351
           G+R   +H  SL+L E G  FD LR
Sbjct: 148 GVRGKSVHGHSLRLDEDGMMFDMLR 172


>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
           {Archaeon Methanosarcina barkeri [TaxId: 2208]}
          Length = 247

 Score = 26.3 bits (58), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 329 GLRMARMHWDSLKLTESG--FDSLR 351
           G+R A +H  S++L E G  FD L 
Sbjct: 149 GVRGATVHGHSVRLQEDGVMFDMLD 173


>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
           {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 248

 Score = 26.3 bits (58), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 329 GLRMARMHWDSLKLTESG--FDSLR 351
           G+R A +H  +L+L E+G    +LR
Sbjct: 147 GVRGATVHGHALRLDENGLMLHALR 171


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,563,842
Number of extensions: 69403
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 8
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)