Query psy2572
Match_columns 264
No_of_seqs 187 out of 589
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 19:35:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3336|consensus 100.0 4E-55 8.7E-60 370.9 13.6 176 47-222 1-180 (185)
2 PF04707 PRELI: PRELI-like fam 100.0 3.9E-52 8.4E-57 352.9 19.5 153 61-213 1-157 (157)
3 KOG3337|consensus 100.0 4.3E-49 9.4E-54 334.4 11.0 170 1-215 1-171 (201)
4 KOG3336|consensus 99.8 1.7E-19 3.6E-24 153.9 8.1 114 2-130 1-114 (185)
5 PF04707 PRELI: PRELI-like fam 99.6 8.2E-16 1.8E-20 130.6 7.3 109 16-139 1-111 (157)
6 KOG3337|consensus 98.4 6.3E-08 1.4E-12 83.4 -0.1 135 46-214 1-152 (201)
7 PF02121 IP_trans: Phosphatidy 96.6 0.034 7.4E-07 51.1 11.6 123 80-206 38-232 (254)
8 PF10698 DUF2505: Protein of u 95.9 0.91 2E-05 38.3 17.1 112 84-200 38-152 (159)
9 cd07815 SRPBCC_PITP Lipid-bind 95.5 0.43 9.4E-06 43.9 13.5 55 79-133 35-95 (251)
10 cd08889 SRPBCC_PITPNM1-2_like 93.7 1.4 3.1E-05 40.7 12.2 54 80-133 38-97 (260)
11 cd08890 SRPBCC_PITPNC1_like Li 92.9 1.4 3.1E-05 40.5 10.9 53 79-133 35-94 (250)
12 cd08888 SRPBCC_PITPNA-B_like L 90.7 7.6 0.00017 35.9 13.0 54 80-133 36-95 (258)
13 KOG3668|consensus 86.1 2 4.3E-05 39.6 6.0 41 94-134 57-98 (269)
14 PF12210 Hrs_helical: Hepatocy 39.2 9.8 0.00021 30.2 -0.0 71 180-252 7-84 (96)
15 PF08982 DUF1857: Domain of un 34.2 29 0.00063 29.4 2.0 58 58-133 18-77 (149)
16 PLN02806 complex I subunit 23.6 46 0.00099 25.6 1.3 9 11-19 29-37 (81)
17 cd07818 SRPBCC_1 Ligand-bindin 23.3 3.7E+02 0.008 21.1 7.0 57 148-207 92-148 (150)
18 cd08868 START_STARD1_3_like Ch 20.8 5.4E+02 0.012 22.1 10.9 37 3-39 48-86 (208)
19 PF11630 DUF3254: Protein of u 20.3 1.6E+02 0.0034 23.6 3.7 41 155-195 48-88 (100)
No 1
>KOG3336|consensus
Probab=100.00 E-value=4e-55 Score=370.92 Aligned_cols=176 Identities=29% Similarity=0.555 Sum_probs=168.3
Q ss_pred eeEEecCeeeeecceeeeecccccCCCCCCCccceeeEEEeEee-CCeEEEEEeeecccCCChhhHhhhcCcee-EEEEE
Q psy2572 47 VKYFENKTVFRFNWEQVAQGYWRRYPNPESTHVLSEDIVDQRIT-DNKLFTKRILTKTNNAPKWGERFIKTNKI-KIVEE 124 (264)
Q Consensus 47 ~k~~~~~~~~~~~we~V~~a~~~KYPnP~~~hV~s~DVlersV~-dg~L~t~RLi~~~~~lP~w~~kl~g~~~~-~i~E~ 124 (264)
||.|.++|+|+||||+|++|.|+|||||+.+||+.+|||+|.++ .|+|||+|||+..+.+|+|+.+|+|...+ |+.|.
T Consensus 1 MKi~~seh~F~hPwE~Vt~A~w~KyPnp~~~hVi~VDvl~R~l~~~GkL~TeRlit~~~~~P~w~~~LiG~a~~~yv~E~ 80 (185)
T KOG3336|consen 1 MKIFQSEHIFDHPWETVTAAAWRKYPNPINTHVIGVDVLDRKLDDSGKLHTERLITIHQGLPSWIHKLIGGANTCYVREV 80 (185)
T ss_pred CccccccccccCcHHHHHHHHHHhCCCCCCCceEEEeeeeeeeccCceEEEeeeeeeccCCcHHHHHHhCcccceEEEEE
Confidence 68899999999999999999999999999999999999999999 69999999999999999999999998765 79999
Q ss_pred eeeeCCCCeEEEEEEeccccceEEEEEEEEEEecCCCCCeeEEEEEEEEEEee--ecHHHHHHHHHHHHHHHHHHHHHHH
Q psy2572 125 SICDPKEKTLTTYTRNIGYTSVMSVIEKVEYKVSDENENWTLAKRSVWIDSKM--YGFSLAIQKFGLERYKKNILKMTNG 202 (264)
Q Consensus 125 S~VDp~~rtm~~~T~Nls~~~~~~V~E~~~Y~~~p~np~~T~~~q~a~I~s~~--~g~~~~iE~~~~~rf~~na~Kgr~g 202 (264)
|+|||+.|+|++.|+||+|+++++|+|+++|.|||+||+||+|+|+|.|++.+ ..|+.++|+|++++|.+||.|||+|
T Consensus 81 SvVD~~~ksm~L~t~Nltf~~~l~vdE~l~Y~PhP~dpskTv~~QEa~it~~~~~~~ls~~~E~~~~s~fs~NA~KGreg 160 (185)
T KOG3336|consen 81 SVVDPKRKSMTLKTCNLTFSDFLSVDERLTYSPHPEDPSKTVLKQEAIITIKGPLVSLSEYVEQWSASRFSQNASKGREG 160 (185)
T ss_pred EEEcCccceEEEEecccccccceEeeeEEEecCCCCCcccceeeeeeEEEEecchhhHHHHHHHHHHHHHhhcccccHHH
Confidence 99999999999999999999999999999999999999999999999999987 5799999999999999999999999
Q ss_pred HHHHHHHhCCCchhhhhhhc
Q psy2572 203 FNFILNAMFPNVLQQNANLA 222 (264)
Q Consensus 203 ~e~vl~~l~~e~~~~~~~~~ 222 (264)
|||||+.+..|.+.++..++
T Consensus 161 ~e~Vl~~~n~e~~~i~~~~s 180 (185)
T KOG3336|consen 161 FEWVLKKINAEVERISTKVS 180 (185)
T ss_pred HHHHHHHHHHHHHHhccchh
Confidence 99999999999887776444
No 2
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=100.00 E-value=3.9e-52 Score=352.91 Aligned_cols=153 Identities=45% Similarity=0.752 Sum_probs=147.5
Q ss_pred eeeeecccccCCCCCCCccceeeEEEeEee-CCeEEEEEeeecccCCChhhHhhhcC-ceeEEEEEeeeeCCCCeEEEEE
Q psy2572 61 EQVAQGYWRRYPNPESTHVLSEDIVDQRIT-DNKLFTKRILTKTNNAPKWGERFIKT-NKIKIVEESICDPKEKTLTTYT 138 (264)
Q Consensus 61 e~V~~a~~~KYPnP~~~hV~s~DVlersV~-dg~L~t~RLi~~~~~lP~w~~kl~g~-~~~~i~E~S~VDp~~rtm~~~T 138 (264)
|+|++|||+|||||+++||+++|||+|+|| ||+|+|+||+++++++|+|++||+|. ..++++|+|+|||++|+|+++|
T Consensus 1 e~V~~a~w~kYPnp~~~hVl~~Dvl~r~vd~~g~l~t~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~t 80 (157)
T PF04707_consen 1 ETVTSAFWRKYPNPYSPHVLSVDVLDREVDPDGKLHTKRLITKKNNLPRWLKKLIGVDSECYIIEESIVDPKNKTLTTKT 80 (157)
T ss_pred CHhHHHHHhhCCCCCCCceeEEEEEEEEEcCCCcEEEeeeeeeecCchHHHHHHhCcCceEEEEEEEEEECCCCEEEEEE
Confidence 579999999999999999999999999999 89999999999999999999999995 4588999999999999999999
Q ss_pred EeccccceEEEEEEEEEEecCCCCCeeEEEEEEEEEEee--ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy2572 139 RNIGYTSVMSVIEKVEYKVSDENENWTLAKRSVWIDSKM--YGFSLAIQKFGLERYKKNILKMTNGFNFILNAMFPN 213 (264)
Q Consensus 139 ~Nls~~~~~~V~E~~~Y~~~p~np~~T~~~q~a~I~s~~--~g~~~~iE~~~~~rf~~na~Kgr~g~e~vl~~l~~e 213 (264)
+|++|++++.|+|+|+|.|||+||+||+|+|+|+|++.+ +||+++||+|+++||++|+.|||+||++||++|.+|
T Consensus 81 ~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~kgr~~~e~vi~~l~~~ 157 (157)
T PF04707_consen 81 RNLSFSSFLSVEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAKKGREGMEWVIKKLEEE 157 (157)
T ss_pred EEcccCceeEEEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999955 899999999999999999999999999999999875
No 3
>KOG3337|consensus
Probab=100.00 E-value=4.3e-49 Score=334.41 Aligned_cols=170 Identities=35% Similarity=0.671 Sum_probs=156.2
Q ss_pred CceEeecceeecCChHHHHHHHHhhCCCCCCCceeeeeecccccceeeEEecCeeeeecceeeeecccccCCCCCCCccc
Q psy2572 1 MVKYFENKTVFRFNWEQVAQGYWRRYPNPESLVKVKYSTCGVCLLMVKYFENKTVFRFNWEQVAQGYWRRYPNPESTHVL 80 (264)
Q Consensus 1 m~~~~~~~~~~~~~w~~v~~a~~~kYpnp~~~hv~~~dv~~~~~~m~k~~~~~~~~~~~we~V~~a~~~KYPnP~~~hV~ 80 (264)
|++|+.++++|+++|++|+.|||+||||||++||||+||
T Consensus 1 Mvl~~~~~t~lp~s~d~VssAfw~RYPNpySkHVlSeDv----------------------------------------- 39 (201)
T KOG3337|consen 1 MVLYDLGQTVLPSSWDQVSSAFWQRYPNPYSKHVLSEDV----------------------------------------- 39 (201)
T ss_pred CeeEecCCCcccCcHHHHHHHHHHhCCCccccccccHHH-----------------------------------------
Confidence 888999999999999999999999999999999888887
Q ss_pred eeeEEEeEee-CCeEEEEEeeecccCCChhhHhhhcCceeEEEEEeeeeCCCCeEEEEEEeccccceEEEEEEEEEEecC
Q psy2572 81 SEDIVDQRIT-DNKLFTKRILTKTNNAPKWGERFIKTNKIKIVEESICDPKEKTLTTYTRNIGYTSVMSVIEKVEYKVSD 159 (264)
Q Consensus 81 s~DVlersV~-dg~L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~VDp~~rtm~~~T~Nls~~~~~~V~E~~~Y~~~p 159 (264)
|||.|+ ||.|+|+||+.+++++|+|+.+|+....++++|+|+|||.+++|.++|+||+|.++|.|+|+|+|..+.
T Consensus 40 ----leR~Vt~dg~L~T~RLLvKqgRlPrWasrll~i~~v~viE~SVvdp~nqtmkTyTrNldH~~lm~v~Erc~y~~ss 115 (201)
T KOG3337|consen 40 ----LEREVTDDGTLVTKRLLVKQGRLPRWASRLLDIQVVYVIEESVVDPVNQTMKTYTRNLDHARLMVVEERCVYCVSS 115 (201)
T ss_pred ----HhhhcCcccceehhhhHHhcCCCchhhhhhcccceeEEeeeeecCccccceeeeeeccccceeeEEEEEEEEEecC
Confidence 355666 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEEEEEeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Q psy2572 160 ENENWTLAKRSVWIDSKMYGFSLAIQKFGLERYKKNILKMTNGFNFILNAMFPNVL 215 (264)
Q Consensus 160 ~np~~T~~~q~a~I~s~~~g~~~~iE~~~~~rf~~na~Kgr~g~e~vl~~l~~e~~ 215 (264)
+||+++.-.++.++++..+|+++++++|++.||++|..|+|.||++||++++++..
T Consensus 116 dns~ti~d~~~kfvss~~~G~~r~Vqe~sl~rFkenv~ktrkGl~yvlqk~fg~a~ 171 (201)
T KOG3337|consen 116 DNSGTIEDRREKFVSSSLFGVSRAVQEFSLARFKENVTKTRKGLEYVLQKLFGEAN 171 (201)
T ss_pred CCCcchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccc
Confidence 99876666666666666799999999999999999999999999999999998864
No 4
>KOG3336|consensus
Probab=99.79 E-value=1.7e-19 Score=153.85 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=96.1
Q ss_pred ceEeecceeecCChHHHHHHHHhhCCCCCCCceeeeeecccccceeeEEecCeeeeecceeeeecccccCCCCCCCccce
Q psy2572 2 VKYFENKTVFRFNWEQVAQGYWRRYPNPESLVKVKYSTCGVCLLMVKYFENKTVFRFNWEQVAQGYWRRYPNPESTHVLS 81 (264)
Q Consensus 2 ~~~~~~~~~~~~~w~~v~~a~~~kYpnp~~~hv~~~dv~~~~~~m~k~~~~~~~~~~~we~V~~a~~~KYPnP~~~hV~s 81 (264)
||+|+++|+|+|||++|++|.|+|||||+++||+++|| +.|..+.++++.+.+++-.....|+|-..+...-..
T Consensus 1 MKi~~seh~F~hPwE~Vt~A~w~KyPnp~~~hVi~VDv------l~R~l~~~GkL~TeRlit~~~~~P~w~~~LiG~a~~ 74 (185)
T KOG3336|consen 1 MKIFQSEHIFDHPWETVTAAAWRKYPNPINTHVIGVDV------LDRKLDDSGKLHTERLITIHQGLPSWIHKLIGGANT 74 (185)
T ss_pred CccccccccccCcHHHHHHHHHHhCCCCCCCceEEEee------eeeeeccCceEEEeeeeeeccCCcHHHHHHhCcccc
Confidence 89999999999999999999999999999999999999 555556678999999999999999998877777777
Q ss_pred eeEEEeEeeCCeEEEEEeeecccCCChhhHhhhcCceeEEEEEeeeeCC
Q psy2572 82 EDIVDQRITDNKLFTKRILTKTNNAPKWGERFIKTNKIKIVEESICDPK 130 (264)
Q Consensus 82 ~DVlersV~dg~L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~VDp~ 130 (264)
+.+-|.+++|++-++-.|.++.-.++. ...+-|.-.++|.
T Consensus 75 ~yv~E~SvVD~~~ksm~L~t~Nltf~~---------~l~vdE~l~Y~Ph 114 (185)
T KOG3336|consen 75 CYVREVSVVDPKRKSMTLKTCNLTFSD---------FLSVDERLTYSPH 114 (185)
T ss_pred eEEEEEEEEcCccceEEEEeccccccc---------ceEeeeEEEecCC
Confidence 899999999999667677776544443 3357788887764
No 5
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=99.62 E-value=8.2e-16 Score=130.55 Aligned_cols=109 Identities=21% Similarity=0.342 Sum_probs=85.4
Q ss_pred HHHHHHHHhhCCCCCCCceeeeeecccccceeeEEecCeeeeecceeeeecccccCCCCCCCccceeeEEEeEeeCCeEE
Q psy2572 16 EQVAQGYWRRYPNPESLVKVKYSTCGVCLLMVKYFENKTVFRFNWEQVAQGYWRRYPNPESTHVLSEDIVDQRITDNKLF 95 (264)
Q Consensus 16 ~~v~~a~~~kYpnp~~~hv~~~dv~~~~~~m~k~~~~~~~~~~~we~V~~a~~~KYPnP~~~hV~s~DVlersV~dg~L~ 95 (264)
|+|++|||+|||||+++||+++|| +.+.+++.+.+...+...+....|+|-..+.+....+.++|+++.|.+
T Consensus 1 e~V~~a~w~kYPnp~~~hVl~~Dv------l~r~vd~~g~l~t~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~-- 72 (157)
T PF04707_consen 1 ETVTSAFWRKYPNPYSPHVLSVDV------LDREVDPDGKLHTKRLITKKNNLPRWLKKLIGVDSECYIIEESIVDPK-- 72 (157)
T ss_pred CHhHHHHHhhCCCCCCCceeEEEE------EEEEEcCCCcEEEeeeeeeecCchHHHHHHhCcCceEEEEEEEEEECC--
Confidence 589999999999999999999999 888888889999999999999999988777765666899999999887
Q ss_pred EEEeeecccCCChhhHhhhcCceeEEEEEee--eeCCCCeEEEEEE
Q psy2572 96 TKRILTKTNNAPKWGERFIKTNKIKIVEESI--CDPKEKTLTTYTR 139 (264)
Q Consensus 96 t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~--VDp~~rtm~~~T~ 139 (264)
.++|..++.|+- + .++ ..+.|.++ .||.+...|+.+.
T Consensus 73 ~k~l~~~t~Nls-~-~~~-----~~v~E~~~Y~~~p~np~~T~~~q 111 (157)
T PF04707_consen 73 NKTLTTKTRNLS-F-SSF-----LSVEETCVYKPHPDNPNWTLFKQ 111 (157)
T ss_pred CCEEEEEEEEcc-c-Cce-----eEEEEEEEEEECCCCCCcceEEE
Confidence 667777776652 1 122 34777776 4555555555444
No 6
>KOG3337|consensus
Probab=98.38 E-value=6.3e-08 Score=83.40 Aligned_cols=135 Identities=28% Similarity=0.394 Sum_probs=81.2
Q ss_pred eeeEEecCeeeeecceeeeecccccCCCCCCCccceeeEEEeEeeCCeEEEE-EeeecccCCChhhHhhhcCceeEEEEE
Q psy2572 46 MVKYFENKTVFRFNWEQVAQGYWRRYPNPESTHVLSEDIVDQRITDNKLFTK-RILTKTNNAPKWGERFIKTNKIKIVEE 124 (264)
Q Consensus 46 m~k~~~~~~~~~~~we~V~~a~~~KYPnP~~~hV~s~DVlersV~dg~L~t~-RLi~~~~~lP~w~~kl~g~~~~~i~E~ 124 (264)
|+.+..+++.|+++|++|..|||.|||||+++||++ ..|....+.-. +|.++ ||+-..
T Consensus 1 Mvl~~~~~t~lp~s~d~VssAfw~RYPNpySkHVlS-----eDvleR~Vt~dg~L~T~---------RLLvKq------- 59 (201)
T KOG3337|consen 1 MVLYDLGQTVLPSSWDQVSSAFWQRYPNPYSKHVLS-----EDVLEREVTDDGTLVTK---------RLLVKQ------- 59 (201)
T ss_pred CeeEecCCCcccCcHHHHHHHHHHhCCCcccccccc-----HHHHhhhcCcccceehh---------hhHHhc-------
Confidence 677888999999999999999999999999999863 32223332212 55554 444211
Q ss_pred eeeeCCCCeEEEE-EEeccccceEEEEEEEEEEecCCCCCeeEEEEE-------------EEEEEe--eecHHHHHHHHH
Q psy2572 125 SICDPKEKTLTTY-TRNIGYTSVMSVIEKVEYKVSDENENWTLAKRS-------------VWIDSK--MYGFSLAIQKFG 188 (264)
Q Consensus 125 S~VDp~~rtm~~~-T~Nls~~~~~~V~E~~~Y~~~p~np~~T~~~q~-------------a~I~s~--~~g~~~~iE~~~ 188 (264)
.+|-.- ++-+. -+..-|.|..+|.|. |...+-+++. ..+.++ ..-+...+|+|.
T Consensus 60 -------gRlPrWasrll~-i~~v~viE~SVvdp~--nqtmkTyTrNldH~~lm~v~Erc~y~~ssdns~ti~d~~~kfv 129 (201)
T KOG3337|consen 60 -------GRLPRWASRLLD-IQVVYVIEESVVDPV--NQTMKTYTRNLDHARLMVVEERCVYCVSSDNSGTIEDRREKFV 129 (201)
T ss_pred -------CCCchhhhhhcc-cceeEEeeeeecCcc--ccceeeeeeccccceeeEEEEEEEEEecCCCCcchhHHHHHHh
Confidence 111100 11111 233457788888765 3333333321 111111 122677788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy2572 189 LERYKKNILKMTNGFNFILNAMFPNV 214 (264)
Q Consensus 189 ~~rf~~na~Kgr~g~e~vl~~l~~e~ 214 (264)
.. .+.+.+|..-+|.|.+.....
T Consensus 130 ss---~~~G~~r~Vqe~sl~rFkenv 152 (201)
T KOG3337|consen 130 SS---SLFGVSRAVQEFSLARFKENV 152 (201)
T ss_pred hh---hhhhhHHHHHHHHHHHHHHHH
Confidence 66 688888888899988775443
No 7
>PF02121 IP_trans: Phosphatidylinositol transfer protein; InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes []. More recently, PITP has been shown to be an essential component of the polyphosphoinositide synthesis machinery and is hence required for proper signalling by epidermal growth factor and f-Met-Leu-Phe, as well as for exocytosis. The role of PITP in polyphosphoinositide synthesis may also explain its involvement in intracellular vesicular traffic [].; GO: 0006810 transport, 0005622 intracellular; PDB: 1T27_A 1KCM_A 2A1L_A 1UW5_C.
Probab=96.56 E-value=0.034 Score=51.15 Aligned_cols=123 Identities=19% Similarity=0.344 Sum_probs=80.9
Q ss_pred ceeeEEEeEe-eC----CeEEEEEeeecccCCChhhHhhhcCceeEEEEEee-eeCCCCeEEEEEEeccccceEEEEEEE
Q psy2572 80 LSEDIVDQRI-TD----NKLFTKRILTKTNNAPKWGERFIKTNKIKIVEESI-CDPKEKTLTTYTRNIGYTSVMSVIEKV 153 (264)
Q Consensus 80 ~s~DVlersV-~d----g~L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~-VDp~~rtm~~~T~Nls~~~~~~V~E~~ 153 (264)
..+.||..+- ++ .-.+|++++.....+|+|++.|++.....+.|+|+ ..|-.+|.- |.. -+.+|.-..|+
T Consensus 38 eGVEvl~Nep~~~~~g~~GqYT~K~y~l~sklP~~ir~l~P~~~l~v~E~aWNaYPy~~T~~--t~~-~~~kF~i~IET- 113 (254)
T PF02121_consen 38 EGVEVLKNEPYEDEPGGKGQYTHKIYHLASKLPSWIRALLPKGALYVHEKAWNAYPYCKTVY--TNP-YMDKFSIKIET- 113 (254)
T ss_dssp BEEEEEEEEEEE-TTS-EEEEEEEEEEETTTS-HHHHTTSTTTTTEEEEEEEEETTEEEEEE--EET-TTGGEEEEEEE-
T ss_pred cceEEEEecccccCCCCceeeEEEEEEecccChHHHHHhCCCceEEEEEEEecccceEEEEE--ecC-CCCceEEEEEE-
Confidence 4456665433 22 22689999999999999999999988888999998 467776544 322 44677666676
Q ss_pred EEEecC---C----------------------------------C---------------CCe--e--------EEE--E
Q psy2572 154 EYKVSD---E----------------------------------N---------------ENW--T--------LAK--R 169 (264)
Q Consensus 154 ~Y~~~p---~----------------------------------n---------------p~~--T--------~~~--q 169 (264)
.|.++- + | ++| + ++. .
T Consensus 114 ~~~~d~G~~eNv~~L~~~~lk~reV~~IDI~~d~i~~~dyk~~eDp~~f~S~ktgRGPL~~~W~~~~~~~~~~PiMc~YK 193 (254)
T PF02121_consen 114 MHKPDNGTSENVFNLSPEELKKREVVFIDIANDPISPKDYKEEEDPTKFKSKKTGRGPLKEDWRKEWKKNGKKPIMCCYK 193 (254)
T ss_dssp EEESSSS--TTTT---HHHHTTSEEEEE-TTGGGS-CCC--GGG-CCC---TTT------TTHHHHHCTSSSS--EEEEE
T ss_pred EEcCCCCCcCcccCCCHHHhcCceEEEEEecCCcccccccCcccCchheEecCCCCCCCCcchhhhhhhcCCCCEEEEEE
Confidence 444431 0 1 121 1 111 2
Q ss_pred EEEEEEeeecHHHHHHHHHHHHH-HHHHHHH-HHHHHHH
Q psy2572 170 SVWIDSKMYGFSLAIQKFGLERY-KKNILKM-TNGFNFI 206 (264)
Q Consensus 170 ~a~I~s~~~g~~~~iE~~~~~rf-~~na~Kg-r~g~e~v 206 (264)
-.+|....|||+.++|+|..+.+ +.-..++ |++|-|+
T Consensus 194 lv~v~f~~~GlQ~~vE~~I~~~~~r~i~~~~HRq~fcw~ 232 (254)
T PF02121_consen 194 LVTVEFKWWGLQTKVENFIHKQILRRIFLNFHRQAFCWI 232 (254)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHH-HHHHHHHHHHHHHTH
T ss_pred EEEEEeeeechHHHHHHHHHHhhhhHHHHHHHHHHheeh
Confidence 34455567999999999999988 8887777 7887765
No 8
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.88 E-value=0.91 Score=38.26 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=75.2
Q ss_pred EEEeEee-CCeEEEEEeeecccCCChhhHhhhcCceeEEEEEeeeeC-CCCeEEEEEEeccc-cceEEEEEEEEEEecCC
Q psy2572 84 IVDQRIT-DNKLFTKRILTKTNNAPKWGERFIKTNKIKIVEESICDP-KEKTLTTYTRNIGY-TSVMSVIEKVEYKVSDE 160 (264)
Q Consensus 84 VlersV~-dg~L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~VDp-~~rtm~~~T~Nls~-~~~~~V~E~~~Y~~~p~ 160 (264)
+.+-.++ ||...+.+...-.-.+|..++||+|.+.....++.+ .| .....+.. ..++. ..-+++.=.+++.|.
T Consensus 38 ~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w-~~~~~g~~~g~-~~~~~~G~P~~~~G~~~L~~~-- 113 (159)
T PF10698_consen 38 VESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW-TPLDDGRRTGT-FTVSIPGAPVSISGTMRLRPD-- 113 (159)
T ss_pred EEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE-ecCCCCeEEEE-EEEEecCceEEEEEEEEEecC--
Confidence 3444445 664444444334448999999999977555555666 55 33333322 23333 455777777888884
Q ss_pred CCCeeEEEEEEEEEEeeecHHHHHHHHHHHHHHHHHHHHH
Q psy2572 161 NENWTLAKRSVWIDSKMYGFSLAIQKFGLERYKKNILKMT 200 (264)
Q Consensus 161 np~~T~~~q~a~I~s~~~g~~~~iE~~~~~rf~~na~Kgr 200 (264)
++.|.+.-++.|+++...++.+||++......+...+-.
T Consensus 114 -~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~ 152 (159)
T PF10698_consen 114 -GGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQ 152 (159)
T ss_pred -CCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHH
Confidence 456999999999998888889999999887777665543
No 9
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=95.52 E-value=0.43 Score=43.87 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=41.0
Q ss_pred cceeeEEEeEee-CC----eEEEEEeeecccCCChhhHhhhcCceeEEEEEee-eeCCCCe
Q psy2572 79 VLSEDIVDQRIT-DN----KLFTKRILTKTNNAPKWGERFIKTNKIKIVEESI-CDPKEKT 133 (264)
Q Consensus 79 V~s~DVlersV~-dg----~L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~-VDp~~rt 133 (264)
-..+.||.-+-- |+ --+|++++.....+|+|++.+++.....+.|++. ..|-.+|
T Consensus 35 GeGVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~w~~~~~P~~al~v~EkaWNaYPy~~T 95 (251)
T cd07815 35 GEGVEVLKNEPYEDENGGKGQYTHKIYHLGSKLPSWLRALAPKSALTIEEKSWNAYPYCKT 95 (251)
T ss_pred CccEEEEeccCcccCCCCcceeEEEEEEccccchhHHHHhCCccceEEEhhhhCCCCceeE
Confidence 344566654332 22 3589999999999999999999988888889887 5666665
No 10
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=93.70 E-value=1.4 Score=40.71 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=40.2
Q ss_pred ceeeEEEeEee-CC----eEEEEEeeecccCCChhhHhhhcCceeEEEEEee-eeCCCCe
Q psy2572 80 LSEDIVDQRIT-DN----KLFTKRILTKTNNAPKWGERFIKTNKIKIVEESI-CDPKEKT 133 (264)
Q Consensus 80 ~s~DVlersV~-dg----~L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~-VDp~~rt 133 (264)
-.+.||+-+-- |+ --+|++++.....+|+|++.+++.....+.|+++ .-|-.+|
T Consensus 38 eGVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wl~~~~P~~al~v~EkaWNaYPy~~T 97 (260)
T cd08889 38 SGVEILENRPYTDGPGGSGQYTHKIYHIGSHIPGWFRAILPKSALRVEEEAWNAYPYTRT 97 (260)
T ss_pred ceEEEEeccccccCCCCcceeEEEEEEccccChHHHHHhCCCcceEEehhHhCCCCceEE
Confidence 35667664332 32 3489999999999999999999887777888886 5566555
No 11
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously
Probab=92.90 E-value=1.4 Score=40.48 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=38.0
Q ss_pred cceeeEEEeEee-C-----CeEEEEEeeecccCCChhhHhhhcCceeEEEEEee-eeCCCCe
Q psy2572 79 VLSEDIVDQRIT-D-----NKLFTKRILTKTNNAPKWGERFIKTNKIKIVEESI-CDPKEKT 133 (264)
Q Consensus 79 V~s~DVlersV~-d-----g~L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~-VDp~~rt 133 (264)
-.++.||.-+-- | |+ +|+.++.....+|+|++.+++.. ..+.|++. ..|-.+|
T Consensus 35 geGVEvl~Nep~~~~~~~~Gq-YT~K~~hl~sklP~w~r~~~P~~-l~v~EkaWNaYPy~~T 94 (250)
T cd08890 35 GEGVEVVQNEPCEDPEHGNGQ-FTEKRVYLNSRLPSWARAVVPKI-FYVTEKAWNYYPYTIT 94 (250)
T ss_pred CccEEEEeccccccCCCCccc-eeEEEEEccccChhHHHHhCCcc-eEEehhhhccCCceee
Confidence 345667664432 2 55 78888889999999999999876 56778876 4555554
No 12
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=90.67 E-value=7.6 Score=35.95 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=39.1
Q ss_pred ceeeEEEeEee-CC----eEEEEEeeecccCCChhhHhhhcCceeEEEEEee-eeCCCCe
Q psy2572 80 LSEDIVDQRIT-DN----KLFTKRILTKTNNAPKWGERFIKTNKIKIVEESI-CDPKEKT 133 (264)
Q Consensus 80 ~s~DVlersV~-dg----~L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~-VDp~~rt 133 (264)
..+.||.-+-- ++ --+|++++.....+|+|++.+++.....+.|+++ -.|-.+|
T Consensus 36 eGVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wir~~~P~~al~v~EkaWNaYPy~~T 95 (258)
T cd08888 36 EGIEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPGFVRMLAPEGSLEIHEKAWNAYPYCRT 95 (258)
T ss_pred ccEEEEeccccccCCCCcceeEEEEEEccccchhHHHHhCCCcceEEehhhhcCCCceEE
Confidence 34666664332 22 3489999999999999999999887777888886 4455444
No 13
>KOG3668|consensus
Probab=86.08 E-value=2 Score=39.55 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=33.9
Q ss_pred EEEEEeeecccCCChhhHhhhcCceeEEEEEee-eeCCCCeE
Q psy2572 94 LFTKRILTKTNNAPKWGERFIKTNKIKIVEESI-CDPKEKTL 134 (264)
Q Consensus 94 L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~-VDp~~rtm 134 (264)
=+|+++......+|+|++.|++.....+.|+|+ --|-.+|.
T Consensus 57 qyThKIyhl~sk~P~~~r~l~Pk~al~v~EesWNAYPy~rT~ 98 (269)
T KOG3668|consen 57 QYTHKIYHLGSKVPAWLRSLLPKGALIVHEESWNAYPYTRTR 98 (269)
T ss_pred ceEEEEEEecccchHHHHHhCCccceEEeeecccccceEEEE
Confidence 379999999999999999999988888999996 44554443
No 14
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=39.19 E-value=9.8 Score=30.16 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCC----Cchhhhhhhccc--cccccccccCCchHHHHHHHhhhhhhhh
Q psy2572 180 FSLAIQKFGLERYKKNILKMTNGFN-FILNAMFP----NVLQQNANLAST--MSSTNQNFAINPDKLKEKAKKVTSDFAT 252 (264)
Q Consensus 180 ~~~~iE~~~~~rf~~na~Kgr~g~e-~vl~~l~~----e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 252 (264)
+.+.||- ..+|.++|+.|||.+.+ --+.-|+. -.+.+...+... -...=+..|.|+..|++ ||.|.|.+..
T Consensus 7 l~~~v~i-f~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~e-AR~AlDalR~ 84 (96)
T PF12210_consen 7 LRSSVEI-FVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKE-ARAALDALRE 84 (96)
T ss_dssp HHHHHHH-HHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4455554 47899999999995432 11222221 111111111100 01111116677777776 6888888753
No 15
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=34.16 E-value=29 Score=29.36 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=36.3
Q ss_pred ecceeeeecccccC--CCCCCCccceeeEEEeEeeCCeEEEEEeeecccCCChhhHhhhcCceeEEEEEeeeeCCCCe
Q psy2572 58 FNWEQVAQGYWRRY--PNPESTHVLSEDIVDQRITDNKLFTKRILTKTNNAPKWGERFIKTNKIKIVEESICDPKEKT 133 (264)
Q Consensus 58 ~~we~V~~a~~~KY--PnP~~~hV~s~DVlersV~dg~L~t~RLi~~~~~lP~w~~kl~g~~~~~i~E~S~VDp~~rt 133 (264)
-++++|..|...|. |.++.+++.+++|++++ ++. ..|-+.. | ...+.|.....|..+.
T Consensus 18 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~--~~~--~~R~v~f------------g--~~~v~E~v~~~~~~~V 77 (149)
T PF08982_consen 18 LTREQLWRGLVLKARNPQLFVPGIDSCEVLSES--DTV--LTREVTF------------G--GATVRERVTLYPPERV 77 (149)
T ss_dssp --HHHHHHHHHHHHH-GGGT-TT--EEEEEEE---SSE--EEEEEEE------------T--TEEEEEEEEEETTTEE
T ss_pred cCHHHHHHHHHHHHhChhhCccccCeEEEEecC--CCe--EEEEEEE------------C--CcEEEEEEEEeCCcEE
Confidence 34667777877777 66789999999999998 444 4455543 2 1247788888877753
No 16
>PLN02806 complex I subunit
Probab=23.60 E-value=46 Score=25.56 Aligned_cols=9 Identities=44% Similarity=0.981 Sum_probs=6.0
Q ss_pred ecCChHHHH
Q psy2572 11 FRFNWEQVA 19 (264)
Q Consensus 11 ~~~~w~~v~ 19 (264)
++|||+||.
T Consensus 29 mrhPWeHV~ 37 (81)
T PLN02806 29 MRHPWEHVL 37 (81)
T ss_pred ccCcHHHHH
Confidence 457777765
No 17
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=23.27 E-value=3.7e+02 Score=21.07 Aligned_cols=57 Identities=7% Similarity=-0.197 Sum_probs=35.9
Q ss_pred EEEEEEEEEecCCCCCeeEEEEEEEEEEeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2572 148 SVIEKVEYKVSDENENWTLAKRSVWIDSKMYGFSLAIQKFGLERYKKNILKMTNGFNFIL 207 (264)
Q Consensus 148 ~V~E~~~Y~~~p~np~~T~~~q~a~I~s~~~g~~~~iE~~~~~rf~~na~Kgr~g~e~vl 207 (264)
...-...+.|.+ +.|.++....++..+..+...+..+....+++...++-+++...+
T Consensus 92 ~~~~~~~~~~~~---~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 148 (150)
T cd07818 92 TNDVEFTLEPVG---GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVL 148 (150)
T ss_pred cceEEEEEEEcC---CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 445555566652 359999888777654334455666666777777777666665544
No 18
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=20.85 E-value=5.4e+02 Score=22.06 Aligned_cols=37 Identities=11% Similarity=-0.053 Sum_probs=27.4
Q ss_pred eEeecceeecCChHHHHHHHHhhCC--CCCCCceeeeee
Q psy2572 3 KYFENKTVFRFNWEQVAQGYWRRYP--NPESLVKVKYST 39 (264)
Q Consensus 3 ~~~~~~~~~~~~w~~v~~a~~~kYp--np~~~hv~~~dv 39 (264)
+.|..+.+.+.|-++|..+++.... .-...++....+
T Consensus 48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~ 86 (208)
T cd08868 48 KVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKI 86 (208)
T ss_pred eEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEE
Confidence 5677788999999999988886533 334566777776
No 19
>PF11630 DUF3254: Protein of unknown function (DUF3254); InterPro: IPR024509 Anti-lipopolysaccharide factor binds to bacterial LPS and may specifically inhibit the LPS-mediated activation of the hemolymph coagulation. It has a strong antibacterial effect, especially on the growth of Gram-negative bacteria [,]. This entry also includes the antibacterial protein Scygonadin, which has antibacterial activity against the Gram-positive bacterium Micrococcus luteus [].; PDB: 2JOB_A.
Probab=20.29 E-value=1.6e+02 Score=23.63 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=25.2
Q ss_pred EEecCCCCCeeEEEEEEEEEEeeecHHHHHHHHHHHHHHHH
Q psy2572 155 YKVSDENENWTLAKRSVWIDSKMYGFSLAIQKFGLERYKKN 195 (264)
Q Consensus 155 Y~~~p~np~~T~~~q~a~I~s~~~g~~~~iE~~~~~rf~~n 195 (264)
|+..--.|+||.+.=++.=.|..-..+.++.+|..+-+.+.
T Consensus 48 ~~g~~wCPGWT~i~Ges~trs~sg~~~~a~rDFv~kA~~~g 88 (100)
T PF11630_consen 48 YKGKMWCPGWTPIRGESRTRSRSGVVRKATRDFVRKAFQAG 88 (100)
T ss_dssp EEEEEE-BTTBS-EEEEEES-HHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCccceeccccccCCcchhhHHHHHHHHHHHHcC
Confidence 44444468999888887766654335677888877666553
Done!