RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2572
         (264 letters)



>gnl|CDD|218219 pfam04707, PRELI, PRELI-like family.  This family includes a
           conserved region found in the PRELI protein and yeast
           YLR168C gene MSF1 product. The function of this protein
           is unknown, though it is thought to be involved in
           intra-mitochondrial protein sorting. This region is also
           found in a number of other eukaryotic proteins.
          Length = 157

 Score =  150 bits (380), Expect = 1e-45
 Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 4/152 (2%)

Query: 61  EQVAQGYWRRYPNPESTHVLSEDIVDQRITD-NKLFTKRILTKTNNAPKWGERFIKTNK- 118
           EQV   +WRRYPNP S HV+S D++++++ D  KL T+R+LTK    P+W ++ I     
Sbjct: 1   EQVTAAFWRRYPNPYSPHVISVDVLERKVDDDGKLHTERLLTKQGRLPRWLKKLIGVADT 60

Query: 119 IKIVEESICDPKEKTLTTYTRNIGYTSVMSVIEKVEYKVSDENENWTLAKRSVWID--SK 176
           + ++E S+ DPK++TLT  TRN+ ++S +SV E+  Y    EN NWT   +   I     
Sbjct: 61  VYVLEVSVVDPKKRTLTLETRNLTFSSRLSVDERCTYTPHPENPNWTCFDQEASISVKGS 120

Query: 177 MYGFSLAIQKFGLERYKKNILKMTNGFNFILN 208
            +GFS  ++K+ L+R+ +N  K   G  ++L 
Sbjct: 121 FFGFSSKVEKWSLKRFSQNAKKGREGMEYVLQ 152


>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in
           Tricalbin-like proteins.  5 to 6 copies of the C2 domain
           are present in Tricalbin, a yeast homolog of
           Synaptotagmin, which is involved in membrane trafficking
           and sorting.  C2 domains fold into an 8-standed
           beta-sandwich that can adopt 2 structural arrangements:
           Type I and Type II, distinguished by a circular
           permutation involving their N- and C-terminal beta
           strands. Many C2 domains are Ca2+-dependent
           membrane-targeting modules that bind a wide variety of
           substances including bind phospholipids, inositol
           polyphosphates, and intracellular proteins.  Most C2
           domain proteins are either signal transduction enzymes
           that contain a single C2 domain, such as protein kinase
           C, or membrane trafficking proteins which contain at
           least two C2 domains, such as synaptotagmin 1.  However,
           there are a few exceptions to this including RIM
           isoforms and some splice variants of piccolo/aczonin and
           intersectin which only have a single C2 domain.  C2
           domains with a calcium binding region have negatively
           charged residues, primarily aspartates, that serve as
           ligands for calcium ions. This cd contains the second C2
           repeat, C2B, and has a type-II topology.
          Length = 111

 Score = 26.0 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 7/38 (18%)

Query: 91  DNKLFTKRILTKTNNAPKWG---ERFI---KTNKIKIV 122
              ++T R+  KTNN P W    E  +   + +++ +V
Sbjct: 23  GKLVYTTRVKKKTNN-PSWNASTEFLVTDRRKSRVTVV 59


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0701    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,002,388
Number of extensions: 1176377
Number of successful extensions: 1079
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1076
Number of HSP's successfully gapped: 16
Length of query: 264
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 169
Effective length of database: 6,723,972
Effective search space: 1136351268
Effective search space used: 1136351268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)