RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2572
(264 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 2e-08
Identities = 41/267 (15%), Positives = 78/267 (29%), Gaps = 58/267 (21%)
Query: 15 WEQVAQGYWRRYPNPESLVKVKYSTCGVCL---LMVKYFENKTVFRFNW---EQVAQGYW 68
W+ W+ N + L + + L K F+ +VF + + W
Sbjct: 344 WD-----NWKHV-NCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 69 RRYPNPESTHVLSEDIVDQRIT------DNKLFTKRI-------LTKTNNAPKWGERFIK 115
+ +V++ K T I K N +
Sbjct: 397 F-----DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV- 450
Query: 116 TNKIKIVEESICDPKEKTLTTYTRN-----IGYTSVMSVIEKVEYKVSDENENWTLAKRS 170
+ I + + + Y IG+ + IE E L R
Sbjct: 451 -DHYNIPK---TFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPER--MTLFRMVFLDFR- 501
Query: 171 VWIDSKMYGFSLAIQKFG--------LERYKKNILKMTNGFNFILNAMFPNVLQQNANLA 222
+++ K+ S A G L+ YK I + ++NA+ + + NL
Sbjct: 502 -FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 223 STMSSTNQNFAINPDK---LKEKAKKV 246
+ + A+ + +E K+V
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 33.7 bits (76), Expect = 0.061
Identities = 36/253 (14%), Positives = 78/253 (30%), Gaps = 68/253 (26%)
Query: 27 PNPESLVKVKYSTCGVCLL-----MVKYFENKTVFRFNWEQVAQGYWRRYPNPESTHVLS 81
+ S + LL MV+ F V R N++ + P +
Sbjct: 58 KDAVSGTLRLFW----TLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 82 EDIVDQRITDNKLFTKRILTKTNNAPKWGERFIKTNKIKIVEESICDPKEKTLTTYTRNI 141
+ D+ DN++F K ++ R K++ + P K +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQALLEL-RP-AKNVLID---- 156
Query: 142 GYT----SVMSVIEKV-EYKVSDENENWTLAKRSVWIDSKMYGFSLAIQKFGLERYKKNI 196
G + + ++ YKV + + + W+ + +
Sbjct: 157 GVLGSGKTWV-ALDVCLSYKVQCKMDF-----KIFWL------------NLKNCNSPETV 198
Query: 197 LKMTNGFNFILNAMFPNVLQQNANLASTMSSTNQNFAINPDKLKEKAKKVTSDFATKSSK 256
L+M + ++ PN + S + N + ++ + +++ +K +
Sbjct: 199 LEMLQKLLYQID---PNWTSR--------SDHSSNIKLRIHSIQAELRRL---LKSKPYE 244
Query: 257 --LL---NVPNPS 264
LL NV N
Sbjct: 245 NCLLVLLNVQNAK 257
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-05
Identities = 39/252 (15%), Positives = 82/252 (32%), Gaps = 67/252 (26%)
Query: 46 MVK--YFENKTVFRFNWEQVAQGYWR-RY---------PNPESTHVLSEDIVDQRITDNK 93
M Y + + W + A +++ Y NP + + +RI +N
Sbjct: 1631 MGMDLY-KTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN- 1687
Query: 94 LFTKRILTKTNNAPKWGERFIKTNKIKIVEESICDPKEK-TLTTYTRNIGYTSV-MSVIE 151
++ I + E+ K + K + T +T ++++E
Sbjct: 1688 -YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ------FTQPALTLME 1740
Query: 152 KVEYKVSDENENWTLAKRSVWIDSKMY-GFSL----AI----QKFGLERYKKNILKMTN- 201
K ++ L + + + G SL A+ +E +++++
Sbjct: 1741 KAAFED--------LKSKGLIPADATFAGHSLGEYAALASLADVMSIE----SLVEVVFY 1788
Query: 202 -GFNFILNAMFPNVLQQNANLASTMSSTNQNFAINPDKL-----KEKAKKVTSDFATKSS 255
G + A+ P +N M AINP ++ +E + V ++
Sbjct: 1789 RG-MTMQVAV-PRDELGRSNYG--M------IAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 256 KLL-----NVPN 262
L+ NV N
Sbjct: 1839 WLVEIVNYNVEN 1850
Score = 28.5 bits (63), Expect = 3.1
Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 43/110 (39%)
Query: 50 FEN--KTVF---RFNWEQVAQGYWRRYP------NPESTHV-LSEDIVDQRITDNKLFTK 97
E+ + VF V + R NP S++ + +
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-------VVE 1831
Query: 98 RILTKT-------N-NAPKW-----GE-----------RFIKTNKIKIVE 123
R+ +T N N G+ FIK KI I+E
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type
lectin, glycoprotein, cell adhesion, calcium-binding,
heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16
g.75.1.1
Length = 350
Score = 28.8 bits (64), Expect = 2.0
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 12/80 (15%)
Query: 4 YFENKTVFRFNWEQVAQGYWRRYPNPESLVKVKYSTCGVCLLMVKYFENKTVFRFNWEQV 63
Y + + W+QV Q YW P G+ + K ++ T E +
Sbjct: 209 YQSSSRFYVVMWKQVTQSYWDTNPTR------AQGYSGLSV---KVVKSTTG---PGEHL 256
Query: 64 AQGYWRRYPNPESTHVLSED 83
W P L D
Sbjct: 257 RNALWHTGNTPGQVRTLWHD 276
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 26.7 bits (59), Expect = 4.7
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 88 RITDNKLFTKRILTKTNNAPKWGERFI 114
+ D+++ KTN+ P W + F+
Sbjct: 45 NVDDSRIGQTATKQKTNS-PAWHDEFV 70
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 26.1 bits (57), Expect = 8.9
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 88 RITDNKLFTKRILTKTNNAPKWGERFI 114
+ ++ KTN P + E F
Sbjct: 67 SVDQVRVGQTSTKQKTNK-PTYNEEFC 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.392
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,916,100
Number of extensions: 215080
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 10
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)