RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2572
         (264 letters)



>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 45

 Score = 25.4 bits (56), Expect = 1.4
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 70 RYPNPESTHVLSEDIVDQRITD 91
          + P  ES  +L ED+V + IT+
Sbjct: 17 QNPYTESVDIL-EDLVIEFITE 37


>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor,
           FtsY {Thermotoga maritima [TaxId: 2336]}
          Length = 81

 Score = 25.9 bits (57), Expect = 1.8
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 97  KRILTKTNNAPKWGERFIKTNKIKIVEESICDPKEKTLTTYTRNIGYTSVMSVIEKVEYK 156
           K+ L KT     +  R +K  K K +++   +  E+ L     ++G  +   ++E++E K
Sbjct: 8   KKGLQKTKE--TFFGRVVKLLKGKKLDDETREELEELL--IQADVGVETTEYILERLEEK 63

Query: 157 VSDENEN 163
             D  E+
Sbjct: 64  DGDALES 70


>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
           {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
          Length = 690

 Score = 26.8 bits (59), Expect = 2.9
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 19/120 (15%)

Query: 105 NAPKWGERFIKTNKIKIVEESICDPKEKTLTTYTRNIGYTSVMSVIEKVEYKVSDE---- 160
           N P    R +        EE I + ++  L T T  +     +SVIE +    SDE    
Sbjct: 557 NRPTASRRLLPEKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLG 616

Query: 161 ---NENWTLAKRSVWIDSKMYGFSLAIQKFG--LERYKKNILKMTNGFNFILNAMFPNVL 215
              N +WT   +++           A QKFG  L+  ++ +++  N  +   N + P  L
Sbjct: 617 QRDNPHWTSDSKAL----------QAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQL 666


>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 99

 Score = 24.7 bits (54), Expect = 5.4
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 2/55 (3%)

Query: 80  LSEDIVDQRITDNKLFTKRILTKTNNAPKWGE--RFIKTNKIKIVEESICDPKEK 132
             +D+         +    +L     +P   +    I+   I +  E + D    
Sbjct: 18  GFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAI 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 996,911
Number of extensions: 44979
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 9
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)