BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2574
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55833|RS27_HOMAM 40S ribosomal protein S27 OS=Homarus americanus GN=RPS27 PE=3
SV=2
Length = 84
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/75 (82%), Positives = 71/75 (94%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLAKDLLHPS +EEKRK KLKRLVQHPNSYFMDVKCPGC+KI+TVFSHAQ+VV C GC+
Sbjct: 1 MPLAKDLLHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCA 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+A+LT+
Sbjct: 61 TVLCQPTGGKAKLTD 75
>sp|Q3T0B7|RS27L_BOVIN 40S ribosomal protein S27-like OS=Bos taurus GN=RPS27L PE=3 SV=3
Length = 84
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 70/75 (93%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLA+DLLHPS EEK+KHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLARDLLHPSLDEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|Q9TXP0|RS27_CAEEL 40S ribosomal protein S27 OS=Caenorhabditis elegans GN=rps-27
PE=1 SV=3
Length = 83
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 64/75 (85%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLA DLLHP E R HKLKRLVQHPNSYFMDVKC GC+KI+TVFSHA +VV+C GC+
Sbjct: 1 MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCN 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPT G+A+LTE
Sbjct: 61 TVLCQPTRGKAKLTE 75
>sp|P24051|RS27L_RAT 40S ribosomal protein S27-like OS=Rattus norvegicus GN=Rps27l
PE=1 SV=3
Length = 84
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 70/75 (93%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLA+DLLHPS EEK+KHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|Q6ZWY3|RS27L_MOUSE 40S ribosomal protein S27-like OS=Mus musculus GN=Rps27l PE=2
SV=3
Length = 84
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 70/75 (93%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLA+DLLHPS EEK+KHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|Q71UM5|RS27L_HUMAN 40S ribosomal protein S27-like OS=Homo sapiens GN=RPS27L PE=1
SV=3
Length = 84
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 70/75 (93%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLA+DLLHPS EEK+KHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|Q7RVN2|RS27_NEUCR 40S ribosomal protein S27 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rps-27 PE=3 SV=1
Length = 82
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 64/75 (85%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
M LA DLL+PS A E RKHKLK LV P S+FMDVKCPGC+ ITTVFSHAQ+VVIC GC+
Sbjct: 1 MVLAVDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCT 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|Q71TY3|RS27_RAT 40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3
Length = 84
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/75 (88%), Positives = 70/75 (93%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLAKDLLHPS EEKRKHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|Q6ZWU9|RS27_MOUSE 40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3
Length = 84
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/75 (88%), Positives = 70/75 (93%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLAKDLLHPS EEKRKHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|P42677|RS27_HUMAN 40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3
Length = 84
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/75 (88%), Positives = 70/75 (93%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLAKDLLHPS EEKRKHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|Q2KHT7|RS27_BOVIN 40S ribosomal protein S27 OS=Bos taurus GN=RPS27 PE=3 SV=3
Length = 84
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/75 (88%), Positives = 70/75 (93%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLAKDLLHPS EEKRKHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|P47904|RS27_XENLA 40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2
Length = 84
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/75 (86%), Positives = 70/75 (93%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLAKDLLHP+ EEKRKHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLAKDLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|O74330|RS27_SCHPO 40S ribosomal protein S27 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps27 PE=3 SV=1
Length = 83
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 63/75 (84%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
M LA DLL+PS E RKHKLK+LVQ P S+FMDVKCPGC+ ITTVFSHAQ+VVIC C+
Sbjct: 1 MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60
Query: 61 TILCQPTGGRARLTE 75
++LCQPTGG+ARL E
Sbjct: 61 SVLCQPTGGKARLME 75
>sp|Q5RBK1|RS27_PONAB 40S ribosomal protein S27 OS=Pongo abelii GN=RPS27 PE=3 SV=3
Length = 84
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/75 (86%), Positives = 69/75 (92%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
MPLAKD LHPS EEKRKHK KRLVQ PNSYFMDVKCPGCYKITTVFSHAQ+VV+C GCS
Sbjct: 1 MPLAKDPLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LCQPTGG+ARLTE
Sbjct: 61 TVLCQPTGGKARLTE 75
>sp|Q8L953|RS273_ARATH 40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D
PE=1 SV=2
Length = 84
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 59/70 (84%)
Query: 6 DLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQ 65
DLLHP EKRKHKLKRLVQ PNS+FMDVKC GC+ ITTVFSH+Q+VV+C C T+LCQ
Sbjct: 8 DLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQ 67
Query: 66 PTGGRARLTE 75
PTGG+ARL E
Sbjct: 68 PTGGKARLQE 77
>sp|Q9M2F1|RS272_ARATH 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B
PE=2 SV=2
Length = 86
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 60/70 (85%)
Query: 6 DLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQ 65
DLL+P EKRKHKLKRLVQ PNS+FMDVKC GC+ ITTVFSH+Q+VV+C C TILCQ
Sbjct: 8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQ 67
Query: 66 PTGGRARLTE 75
PTGG+A+LTE
Sbjct: 68 PTGGKAKLTE 77
>sp|P35997|RS27_YEAST 40S ribosomal protein S27-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS27A PE=1 SV=1
Length = 82
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 60/75 (80%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
M L +DLLHP+ A E RKHKLK LVQ P SYF+DVKCPGC ITTVFSHAQ+ V C CS
Sbjct: 1 MVLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCS 60
Query: 61 TILCQPTGGRARLTE 75
TILC PTGG+A+L+E
Sbjct: 61 TILCTPTGGKAKLSE 75
>sp|P38711|RS27B_YEAST 40S ribosomal protein S27-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS27B PE=1 SV=1
Length = 82
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 60/75 (80%)
Query: 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCS 60
M L +DLLHP+ A E RKHKLK LVQ P SYF+DVKCPGC ITTVFSHAQ+ V C CS
Sbjct: 1 MVLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCS 60
Query: 61 TILCQPTGGRARLTE 75
T+LC PTGG+A+L+E
Sbjct: 61 TVLCTPTGGKAKLSE 75
>sp|O64650|RS271_ARATH 40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A
PE=3 SV=1
Length = 84
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 59/70 (84%)
Query: 6 DLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQ 65
DLL+P EKRKHKLKRLVQ PNS+FMDVKC GC+ ITTVFSH+Q+VV+C C T+LC
Sbjct: 8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCT 67
Query: 66 PTGGRARLTE 75
PTGG+A+LTE
Sbjct: 68 PTGGKAKLTE 77
>sp|Q8T1V4|RS27_DICDI 40S ribosomal protein S27 OS=Dictyostelium discoideum GN=rps27
PE=3 SV=2
Length = 85
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 58/69 (84%)
Query: 6 DLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQ 65
DLL PS EKRKHKLKRLVQ PNS+FMD+ C GC ITTVFSHAQ+VVIC+ CST++ Q
Sbjct: 7 DLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCSTVIAQ 66
Query: 66 PTGGRARLT 74
PTGGRAR+T
Sbjct: 67 PTGGRARIT 75
>sp|P47903|RS27_CHLRE 40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27
PE=3 SV=1
Length = 86
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 55/70 (78%)
Query: 6 DLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQ 65
DLL+P EK KHK KRLVQ PNS+FMDVKC GC+ ITTVFSH+Q+VV+C CS++LC
Sbjct: 8 DLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCT 67
Query: 66 PTGGRARLTE 75
PTG RLTE
Sbjct: 68 PTGWPRRLTE 77
>sp|Q96564|RS27_HORVU 40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2
Length = 86
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 59/70 (84%)
Query: 6 DLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQ 65
DLL+P EK KHK KRLVQ PNS+FMDVKC GC+ ITTVFSH+Q+VV+C GC T+LCQ
Sbjct: 8 DLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67
Query: 66 PTGGRARLTE 75
PTGG+ARLTE
Sbjct: 68 PTGGKARLTE 77
>sp|P38654|RS27_ENTHI 40S ribosomal protein S27 OS=Entamoeba histolytica GN=RPS27 PE=3
SV=1
Length = 84
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 1 MPLAK-DLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGC 59
MPL + DLL+P+ A E + HK+KRLV PNSYF+++KCP C TT FSHA ++C C
Sbjct: 1 MPLIEVDLLNPTAASEAKAHKMKRLVPTPNSYFLEIKCPKCGATTTTFSHAHRQILCQKC 60
Query: 60 STILCQPTGGRARLTED 76
L QPTGG+ +LT+
Sbjct: 61 GQPLGQPTGGKLKLTQQ 77
>sp|A1RRN0|RS27_PYRIL 30S ribosomal protein S27e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rps27e PE=3 SV=1
Length = 67
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%)
Query: 22 KRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLT 74
K L+ P S F+ V+CP C VFSHA VV C C +L +PTGG+ARL
Sbjct: 7 KVLIPQPRSKFIKVRCPDCGNEQVVFSHAAMVVRCLVCGRVLAEPTGGKARLA 59
>sp|B1YAF9|RS27_PYRNV 30S ribosomal protein S27e OS=Pyrobaculum neutrophilum (strain
DSM 2338 / JCM 9278 / V24Sta) GN=rps27e PE=3 SV=1
Length = 67
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 22 KRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLT 74
K L+ P S F+ V+CP C FSHA VV C C +L QPTGG+ARL
Sbjct: 7 KTLIPQPRSRFIKVRCPDCGNEQVTFSHAAMVVRCLVCGRVLAQPTGGKARLA 59
>sp|Q973F9|RS27_SULTO 30S ribosomal protein S27e OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=rps27e PE=3
SV=1
Length = 66
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 18 KHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTEDD 77
K K K L+ P S F+ +KCP C TVFSHA V C C T L P GG+A++
Sbjct: 2 KAKFKVLIPEPKSKFIRIKCPNCGNEQTVFSHATFPVRCLSCGTQLVYPRGGKAKI---- 57
Query: 78 TGDSMTVRG 86
G+++ + G
Sbjct: 58 VGETVRILG 66
>sp|A4WLR8|RS27_PYRAR 30S ribosomal protein S27e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rps27e PE=3 SV=1
Length = 67
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 22 KRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLT 74
K L+ P S F+ ++CP C FSHA VV C C +L QPTGG+A+
Sbjct: 7 KVLIPQPRSKFVKIRCPDCGNEQVTFSHAAMVVRCLVCGRVLAQPTGGKAKFA 59
>sp|Q97Z80|RS27_SULSO 30S ribosomal protein S27e OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rps27e PE=3
SV=1
Length = 66
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%)
Query: 19 HKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTED 76
KL+ L+ P S F+ VKCP C T+FSHA V C C T L GG+A++ +
Sbjct: 3 RKLRVLIPEPKSRFLRVKCPNCGNEQTIFSHATFPVRCLSCGTELVYSMGGKAKIVGE 60
>sp|A2ST12|RS27_METLZ 30S ribosomal protein S27e OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rps27e PE=3 SV=1
Length = 62
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 28/51 (54%)
Query: 26 QHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTED 76
+ S F+ VKCP C VF A SVV C C IL +PTGG+A L D
Sbjct: 6 RETRSKFLKVKCPDCENEQLVFEKATSVVECTVCGRILAEPTGGKAALKAD 56
>sp|A3MUV2|RS27_PYRCJ 30S ribosomal protein S27e OS=Pyrobaculum calidifontis (strain
JCM 11548 / VA1) GN=rps27e PE=3 SV=1
Length = 67
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 24 LVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRA 71
L+ P S F+ ++CP C FSHA VV C C +L QPTGG+A
Sbjct: 9 LIPQPRSRFVRLRCPDCGNEQVTFSHAAMVVRCLVCGRVLAQPTGGKA 56
>sp|Q8ZTY4|RS27_PYRAE 30S ribosomal protein S27e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rps27e PE=3 SV=1
Length = 67
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 22 KRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLT 74
K L+ P S F+ +CP C FSHA VV C C +L PTGG+A+L
Sbjct: 7 KVLIPQPKSKFIKTRCPDCGNEQITFSHAAMVVRCLVCGRVLAIPTGGKAKLA 59
>sp|Q9YF01|RS27_AERPE 30S ribosomal protein S27e OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rps27e PE=3 SV=1
Length = 73
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 19 HKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARL 73
+ K L+ P S F+ V CP C VFSH+ C C +L +PTGG+AR+
Sbjct: 10 RRRKVLIPRPRSRFLLVTCPKCGNRQVVFSHSTFRARCLNCGEVLVEPTGGKARI 64
>sp|A2BN94|RS27_HYPBU 30S ribosomal protein S27e OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rps27e PE=3 SV=1
Length = 66
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 20 KLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARL 73
K K LV P S F+ V+CP C +FSHA C C L +PTGG+A++
Sbjct: 4 KFKILVPQPRSRFLLVRCPVCGNEQVIFSHATFPARCLVCGAQLVEPTGGKAKI 57
>sp|B8GGQ3|RS27_METPE 30S ribosomal protein S27e OS=Methanosphaerula palustris (strain
ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps27e PE=3 SV=1
Length = 62
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 23 RLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTED 76
RL + S F VKCP C +F A +VV C C +L +P GGRA L +
Sbjct: 3 RLYRENRSKFYRVKCPDCENEQIIFEKASTVVDCVVCGHVLAEPRGGRAALKAE 56
>sp|A7I9Q6|RS27_METB6 30S ribosomal protein S27e OS=Methanoregula boonei (strain 6A8)
GN=rps27e PE=3 SV=1
Length = 62
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%)
Query: 23 RLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARL 73
R + S F+ VKCP C TVFS A + V C C L PTGG+A L
Sbjct: 3 REARANRSSFLKVKCPDCDNEQTVFSKASTTVKCVVCGRDLATPTGGKANL 53
>sp|A3CX76|RS27_METMJ 30S ribosomal protein S27e OS=Methanoculleus marisnigri (strain
ATCC 35101 / DSM 1498 / JR1) GN=rps27e PE=3 SV=1
Length = 62
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 21 LKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRA 71
+ R+ + S F+ VKCP C VF A +VV C C IL +P GG+A
Sbjct: 1 MVRVNRENRSTFLRVKCPDCENEQVVFERASTVVECTVCGRILAEPHGGKA 51
>sp|Q4J9B1|RS27_SULAC 30S ribosomal protein S27e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rps27e PE=3 SV=1
Length = 66
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 18 KHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTEDD 77
K K K L+ P S F+ VKC C +FS+A V C C + P GG+A++
Sbjct: 2 KAKFKILIPEPKSKFIRVKCRQCNNEQVIFSNATFPVRCLSCGAQIVIPKGGKAKI---- 57
Query: 78 TGDSMTVRG 86
GD++ + G
Sbjct: 58 EGDTVRILG 66
>sp|Q9HRT7|RS27_HALSA 30S ribosomal protein S27e OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=rps27e PE=3 SV=1
Length = 57
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 32 FMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARL 73
F +V+CP C TVF A + V CA C T L +PTGG A L
Sbjct: 5 FYNVECPDCENEQTVFGKASTEVACAVCGTTLARPTGGEADL 46
>sp|B0R3M1|RS27_HALS3 30S ribosomal protein S27e OS=Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1) GN=rps27e PE=3 SV=1
Length = 57
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 32 FMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARL 73
F +V+CP C TVF A + V CA C T L +PTGG A L
Sbjct: 5 FYNVECPDCENEQTVFGKASTEVACAVCGTTLARPTGGEADL 46
>sp|C5A6X9|RS27_THEGJ 30S ribosomal protein S27e OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rps27e PE=3 SV=1
Length = 65
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 22 KRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRA 71
K L+ P S F+ VKC C VFSH + V C C L +PTGG+
Sbjct: 5 KNLIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLVCGATLVEPTGGKG 54
>sp|Q5JE50|RS27_PYRKO 30S ribosomal protein S27e OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rps27e PE=3 SV=1
Length = 65
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 22 KRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRA 71
K L+ P S F+ VKC C VFSH + V C C L +PTGG+
Sbjct: 5 KNLIPMPRSRFLRVKCIDCGNEQIVFSHPATPVRCLVCGATLVEPTGGKG 54
>sp|P54028|RS27_METJA 30S ribosomal protein S27e OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rps27e PE=3 SV=1
Length = 62
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 21 LKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARL 73
+ L+ P + F+ V+CP C VF +VV C C +L +P GG+ ++
Sbjct: 1 MMELIPQPRTKFLRVQCPECNNEQIVFGSPATVVKCLTCGKVLVEPRGGKGKV 53
>sp|Q46C77|RS27_METBF 30S ribosomal protein S27e OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=rps27e PE=3 SV=1
Length = 62
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 25 VQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLT 74
+Q P S F+ VKC C +F A + C C L +PTGG++ +T
Sbjct: 5 IQRPKSRFLRVKCNDCENEQIIFGSASRKITCVVCGRTLAEPTGGKSTIT 54
>sp|Q8TY87|RS27_METKA 30S ribosomal protein S27e OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rps27e PE=3
SV=1
Length = 73
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 24 LVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARL 73
LV P S F+ V+C C +F +A + V C C L +PTGG+A++
Sbjct: 15 LVPQPRSRFLRVECVDCGNEQIIFGNASTEVKCHICGRTLAKPTGGKAKI 64
>sp|P61932|RS27_METMA 30S ribosomal protein S27e OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps27e PE=3 SV=1
Length = 62
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 26 QHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLT 74
Q P S F+ VKC C +F A + C C L +PTGG++ +T
Sbjct: 6 QRPKSRFLRVKCNDCENEQIIFGSASRKITCVVCGRTLAEPTGGKSTIT 54
>sp|P61931|RS27_METAC 30S ribosomal protein S27e OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps27e PE=3
SV=1
Length = 62
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 26 QHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLT 74
Q P S F+ VKC C +F A + C C L +PTGG++ +T
Sbjct: 6 QRPKSRFLRVKCNDCENEQIIFGSASRKITCVVCGRTLAEPTGGKSTIT 54
>sp|Q2FPD4|RS27_METHJ 30S ribosomal protein S27e OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=rps27e PE=3 SV=1
Length = 62
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 21 LKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARL 73
+ +L + S F+ VKCP C T+F A + V C C + L PTGG+A++
Sbjct: 1 MVQLTRENRSKFVKVKCPDCENEQTIFDRACTPVDCIVCGSNLATPTGGKAQI 53
>sp|B6YT34|RS27_THEON 30S ribosomal protein S27e OS=Thermococcus onnurineus (strain
NA1) GN=rps27e PE=3 SV=1
Length = 65
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 22 KRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGR 70
K L+ P S F+ VKC C VFS+ + V C C L +PTGG+
Sbjct: 5 KNLIPMPRSRFLRVKCIDCGNEQIVFSNPATTVRCLVCGATLVEPTGGK 53
>sp|Q9UXZ3|RS27_PYRAB 30S ribosomal protein S27e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps27e PE=3 SV=1
Length = 65
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 22 KRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGG----RARLTE 75
+ ++ P S F+ VKC C VFSH + V C C L +PTGG RA++ E
Sbjct: 5 RNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILE 62
>sp|Q8U474|RS27_PYRFU 30S ribosomal protein S27e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps27e PE=1 SV=1
Length = 63
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 22 KRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRA 71
K ++ P S F+ VKC C VFSH + V C C L +PTGG+
Sbjct: 3 KPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKG 52
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,729,557
Number of Sequences: 539616
Number of extensions: 1758155
Number of successful extensions: 3317
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3256
Number of HSP's gapped (non-prelim): 67
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)