Query psy2574
Match_columns 115
No_of_seqs 107 out of 233
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 19:40:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_b RP61, YS20, 40S ribosom 100.0 1.4E-50 4.7E-55 281.4 6.0 79 1-79 1-79 (82)
2 2xzm_6 RPS27E; ribosome, trans 100.0 4.5E-49 1.5E-53 273.2 7.4 78 3-80 1-78 (81)
3 3iz6_X 40S ribosomal protein S 100.0 8.9E-49 3E-53 274.3 3.5 80 1-80 1-82 (86)
4 3j20_W 30S ribosomal protein S 100.0 4.8E-35 1.7E-39 195.0 6.0 54 21-74 2-55 (63)
5 1qxf_A GR2, 30S ribosomal prot 100.0 6.7E-30 2.3E-34 171.6 5.4 48 28-75 1-48 (66)
6 1dl6_A Transcription factor II 98.2 2.8E-07 9.6E-12 58.8 1.7 38 28-65 4-42 (58)
7 1pft_A TFIIB, PFTFIIBN; N-term 96.8 0.00069 2.4E-08 40.8 2.3 31 35-65 6-36 (50)
8 4bbr_M Transcription initiatio 95.1 0.012 4E-07 47.5 3.0 32 34-65 21-54 (345)
9 3k7a_M Transcription initiatio 93.0 0.018 6.1E-07 46.0 -0.0 31 35-65 22-54 (345)
10 3k1f_M Transcription initiatio 92.7 0.054 1.9E-06 42.5 2.4 33 33-65 20-54 (197)
11 1vq8_Z 50S ribosomal protein L 92.3 0.066 2.3E-06 36.3 2.1 43 17-64 14-56 (83)
12 1qyp_A RNA polymerase II; tran 91.9 0.22 7.4E-06 30.5 3.9 30 33-62 14-52 (57)
13 1gh9_A 8.3 kDa protein (gene M 90.6 0.23 7.8E-06 32.8 3.3 30 32-64 2-31 (71)
14 1tfi_A Transcriptional elongat 89.2 0.17 5.7E-06 31.1 1.7 29 34-62 9-46 (50)
15 1dxg_A Desulforedoxin; non-hem 86.9 0.65 2.2E-05 26.5 3.1 27 35-63 7-33 (36)
16 1k81_A EIF-2-beta, probable tr 84.7 0.8 2.7E-05 26.4 2.8 28 35-62 1-30 (36)
17 1twf_L ABC10-alpha, DNA-direct 84.3 0.28 9.6E-06 32.2 0.8 33 33-67 27-60 (70)
18 2kdx_A HYPA, hydrogenase/ureas 83.0 0.28 9.5E-06 33.8 0.3 36 33-71 72-108 (119)
19 2ct7_A Ring finger protein 31; 80.6 0.98 3.3E-05 29.5 2.3 29 36-65 27-55 (86)
20 1twf_I B12.6, DNA-directed RNA 80.1 0.9 3.1E-05 31.8 2.2 33 33-65 71-112 (122)
21 1pqv_S STP-alpha, transcriptio 80.0 0.91 3.1E-05 36.2 2.4 35 28-62 262-305 (309)
22 1zso_A Hypothetical protein; s 79.2 1.4 4.7E-05 32.9 3.0 35 27-61 30-78 (164)
23 3a43_A HYPD, hydrogenase nicke 77.8 0.86 3E-05 32.5 1.5 35 34-71 70-125 (139)
24 1vzi_A Desulfoferrodoxin; ferr 76.1 2.1 7.2E-05 30.3 3.1 31 35-67 8-38 (126)
25 3po3_S Transcription elongatio 73.7 1.8 6E-05 32.3 2.3 30 33-62 136-174 (178)
26 3j20_Y 30S ribosomal protein S 71.7 4 0.00014 24.9 3.2 30 33-63 18-47 (50)
27 3h0g_I DNA-directed RNA polyme 71.7 2.7 9.3E-05 28.9 2.7 35 28-62 66-109 (113)
28 2lcq_A Putative toxin VAPC6; P 68.9 1.1 3.7E-05 31.8 0.2 28 34-64 132-159 (165)
29 2jne_A Hypothetical protein YF 63.7 3.6 0.00012 29.2 2.0 32 28-62 26-57 (101)
30 1y07_A Desulfoferrodoxin (RBO) 62.5 4 0.00014 28.9 2.1 30 36-67 9-39 (128)
31 2g2k_A EIF-5, eukaryotic trans 57.7 5.1 0.00017 30.3 2.1 29 35-63 97-129 (170)
32 3j21_g 50S ribosomal protein L 56.6 4.1 0.00014 25.4 1.2 30 33-67 13-42 (51)
33 2e9h_A EIF-5, eukaryotic trans 55.5 6.3 0.00021 29.4 2.2 29 35-63 104-136 (157)
34 3qt1_I DNA-directed RNA polyme 55.2 2.5 8.6E-05 30.4 0.0 30 33-62 91-129 (133)
35 1ffk_W Ribosomal protein L37AE 54.7 11 0.00037 25.0 3.0 43 17-64 14-56 (73)
36 2k2d_A Ring finger and CHY zin 52.8 14 0.00047 24.3 3.4 41 29-70 32-72 (79)
37 3pwf_A Rubrerythrin; non heme 52.7 6 0.0002 29.0 1.7 25 34-62 138-162 (170)
38 1wii_A Hypothetical UPF0222 pr 52.3 11 0.00037 25.5 2.8 29 36-64 25-58 (85)
39 3cc2_Z 50S ribosomal protein L 52.2 14 0.00047 26.6 3.5 30 34-64 60-89 (116)
40 3p2a_A Thioredoxin 2, putative 51.9 13 0.00044 24.2 3.1 57 32-91 3-67 (148)
41 2k4x_A 30S ribosomal protein S 51.9 7.8 0.00027 24.0 1.9 30 34-64 18-47 (55)
42 2kwq_A Protein MCM10 homolog; 51.3 5.4 0.00019 27.5 1.2 30 36-67 50-79 (92)
43 3flo_B DNA polymerase alpha ca 51.0 12 0.00043 28.5 3.3 31 32-63 20-59 (206)
44 2apo_B Ribosome biogenesis pro 46.5 7.5 0.00026 24.9 1.2 24 34-64 6-29 (60)
45 3h0g_L DNA-directed RNA polyme 44.5 5 0.00017 26.0 0.2 29 33-63 20-48 (63)
46 3cw2_K Translation initiation 44.4 2.1 7.1E-05 31.2 -1.9 36 27-62 94-133 (139)
47 2fiy_A Protein FDHE homolog; F 42.2 9.9 0.00034 30.6 1.6 33 31-63 219-263 (309)
48 2d74_B Translation initiation 41.6 4.8 0.00016 29.7 -0.3 28 35-62 105-134 (148)
49 1nee_A EIF-2-beta, probable tr 40.4 6.2 0.00021 28.6 0.1 31 32-62 98-132 (138)
50 1vd4_A Transcription initiatio 38.5 14 0.00048 21.1 1.5 33 35-67 15-53 (62)
51 3j21_i 50S ribosomal protein L 36.6 23 0.00079 24.0 2.5 29 35-64 36-64 (83)
52 3ir9_A Peptide chain release f 36.0 33 0.0011 24.9 3.4 31 33-63 77-113 (166)
53 2gmg_A Hypothetical protein PF 35.3 13 0.00043 26.3 1.0 26 35-63 68-94 (105)
54 2l8e_A Polyhomeotic-like prote 34.8 20 0.00067 21.9 1.8 20 53-72 18-37 (49)
55 4a17_Y RPL37A, 60S ribosomal p 34.4 41 0.0014 23.7 3.6 29 35-64 37-65 (103)
56 2x5c_A Hypothetical protein OR 33.1 22 0.00077 25.6 2.1 17 30-46 48-64 (131)
57 3iz5_m 60S ribosomal protein L 31.4 32 0.0011 23.7 2.6 28 36-64 38-65 (92)
58 2gnr_A Conserved hypothetical 31.3 58 0.002 23.1 4.1 40 29-73 42-84 (145)
59 3lqv_P Splicing factor 3B subu 30.8 6.6 0.00023 23.7 -0.9 19 91-110 19-37 (39)
60 1m2k_A Silent information regu 30.2 30 0.001 26.1 2.5 37 27-67 114-155 (249)
61 1ma3_A SIR2-AF2, transcription 28.7 30 0.001 26.2 2.2 37 27-67 116-161 (253)
62 2e2z_A TIM15; protein import, 28.6 25 0.00085 24.7 1.6 14 33-46 37-50 (100)
63 2jrp_A Putative cytoplasmic pr 28.3 32 0.0011 23.1 2.1 9 55-63 33-41 (81)
64 3izc_m 60S ribosomal protein R 28.1 38 0.0013 23.4 2.5 29 35-64 37-65 (92)
65 1yc5_A NAD-dependent deacetyla 28.0 30 0.001 26.0 2.2 37 27-67 114-158 (246)
66 2l6l_A DNAJ homolog subfamily 27.2 37 0.0013 23.6 2.3 30 33-63 111-143 (155)
67 2aus_D NOP10, ribosome biogene 26.1 24 0.00084 22.6 1.1 23 35-64 6-28 (60)
68 2con_A RUH-035 protein, NIN on 25.7 27 0.00092 23.3 1.3 33 24-62 7-39 (79)
69 1yop_A KTI11P; zinc finger, me 24.7 68 0.0023 21.4 3.2 28 34-63 23-55 (83)
70 2jr7_A DPH3 homolog; DESR1, CS 23.9 69 0.0024 21.7 3.2 28 34-63 23-55 (89)
71 2k1p_A Zinc finger RAN-binding 23.6 12 0.00041 20.8 -0.6 24 34-62 6-29 (33)
72 3u50_C Telomerase-associated p 23.5 88 0.003 23.1 3.9 34 31-67 39-72 (172)
73 3na7_A HP0958; flagellar bioge 23.1 34 0.0012 25.8 1.6 32 36-67 200-236 (256)
74 2fho_A Spliceosomal protein SF 22.9 19 0.00066 22.3 0.2 21 89-110 16-36 (47)
75 3v2d_5 50S ribosomal protein L 22.3 45 0.0015 20.9 1.8 22 34-61 30-51 (60)
76 1lko_A Rubrerythrin all-iron(I 22.3 58 0.002 23.7 2.7 26 34-62 155-180 (191)
77 4ayb_N DNA-directed RNA polyme 22.2 16 0.00054 24.0 -0.4 13 52-64 3-15 (66)
78 1q1a_A HST2 protein; ternary c 21.1 49 0.0017 25.5 2.2 35 29-67 131-176 (289)
No 1
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=100.00 E-value=1.4e-50 Score=281.42 Aligned_cols=79 Identities=67% Similarity=1.149 Sum_probs=77.4
Q ss_pred CCcccccCCCCHHHHHHhhcccccccCCCCceeEEeCCCCCceeEEeeecceeEEcCCCCeeeecccCCceeeccCCCC
Q psy2574 1 MPLAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTEDDTG 79 (115)
Q Consensus 1 m~l~~DLl~Ps~e~ek~k~K~krLV~~PnS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PTGGKA~l~egc~f 79 (115)
|+|++|||||++|+|++|||+|||||+|||||||||||||+|||+|||||||+|.|.+||++||+||||||+|+|||+|
T Consensus 1 m~l~~dLl~P~~~~e~~khK~k~Lv~~PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGGKa~l~egc~f 79 (82)
T 3u5c_b 1 MVLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLSEGTSF 79 (82)
T ss_dssp -CCSCCSSSCCHHHHHSSCTTTSSSCCCCCCEEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCSSBCEECSSCEE
T ss_pred CccchhhcCCCHHHHhhhhhheeeccCCCCcEEEEECCCCCCeeEEEecCCeEEEccccCCEEeccCCCCeEecCCcee
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=100.00 E-value=4.5e-49 Score=273.22 Aligned_cols=78 Identities=53% Similarity=0.971 Sum_probs=75.6
Q ss_pred cccccCCCCHHHHHHhhcccccccCCCCceeEEeCCCCCceeEEeeecceeEEcCCCCeeeecccCCceeeccCCCCc
Q psy2574 3 LAKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTEDDTGD 80 (115)
Q Consensus 3 l~~DLl~Ps~e~ek~k~K~krLV~~PnS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PTGGKA~l~egc~f~ 80 (115)
|+.|||||++|+|+||||+|||||+|||+|||||||||+|||||||||||+|.|.+||++||+||||||+|+|||+|-
T Consensus 1 ~~~dll~p~~~~e~~k~K~k~Lv~~PnS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGGKA~l~egc~fr 78 (81)
T 2xzm_6 1 MERDLLNPIYEEEKQKNKFKRLIQAPNSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPTGGKVQIQAGCAFK 78 (81)
T ss_dssp -CCCSSSCCHHHHHHSCTTTSSSCCCSCCEEEEECSSSCCEEEEETTCSSCEECSSSCCEEEEECSSCEEECSSCEEE
T ss_pred CchhhcCCCHHHHhhhhheeeeeeCCCCcEEEeECCCCCCeeEEEecCccEEEccCCCCEEeecCCCCeEecCCccee
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999999983
No 3
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.9e-49 Score=274.28 Aligned_cols=80 Identities=66% Similarity=1.103 Sum_probs=49.2
Q ss_pred CCc--ccccCCCCHHHHHHhhcccccccCCCCceeEEeCCCCCceeEEeeecceeEEcCCCCeeeecccCCceeeccCCC
Q psy2574 1 MPL--AKDLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTEDDT 78 (115)
Q Consensus 1 m~l--~~DLl~Ps~e~ek~k~K~krLV~~PnS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PTGGKA~l~egc~ 78 (115)
|+| +.|||||++|+||+|||+|||||+|||||||||||+|+|+|+|||||||+|.|.+||++||+||||||+|+|||+
T Consensus 1 m~~~~~~DLl~P~~e~e~~khK~k~Lv~~PnS~Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l~egc~ 80 (86)
T 3iz6_X 1 MVLSNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCS 80 (86)
T ss_dssp --------------------------------CEEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCCSCBCC
T ss_pred CccccchhccCCCHHHHhhhhhheeeccCCCCcEeEEECCCCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEecCCce
Confidence 555 458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc
Q psy2574 79 GD 80 (115)
Q Consensus 79 f~ 80 (115)
|.
T Consensus 81 fr 82 (86)
T 3iz6_X 81 FR 82 (86)
T ss_dssp CC
T ss_pred eE
Confidence 84
No 4
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.8e-35 Score=194.96 Aligned_cols=54 Identities=37% Similarity=0.696 Sum_probs=52.5
Q ss_pred ccccccCCCCceeEEeCCCCCceeEEeeecceeEEcCCCCeeeecccCCceeec
Q psy2574 21 LKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLT 74 (115)
Q Consensus 21 ~krLV~~PnS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PTGGKA~l~ 74 (115)
-|||||+|||||||||||+|+|+|+||||||++|.|.+||++||+||||||+|.
T Consensus 2 ~krLv~~PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGGKa~l~ 55 (63)
T 3j20_W 2 AKPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIVK 55 (63)
T ss_dssp CGGGCCCCSCCEEEEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred ccccccCCCCcEEEEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCCcEEEE
Confidence 378999999999999999999999999999999999999999999999999995
No 5
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=99.96 E-value=6.7e-30 Score=171.58 Aligned_cols=48 Identities=33% Similarity=0.797 Sum_probs=46.4
Q ss_pred CCCceeEEeCCCCCceeEEeeecceeEEcCCCCeeeecccCCceeecc
Q psy2574 28 PNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTE 75 (115)
Q Consensus 28 PnS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PTGGKA~l~e 75 (115)
.||||||||||||+|+|+|||||||+|.|.+||++||+||||||+|+.
T Consensus 1 mnS~Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~~ 48 (66)
T 1qxf_A 1 MHSRFVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIKA 48 (66)
T ss_dssp CCCCEEEEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEECS
T ss_pred CCceeEEEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeeeh
Confidence 489999999999999999999999999999999999999999999983
No 6
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=98.25 E-value=2.8e-07 Score=58.77 Aligned_cols=38 Identities=16% Similarity=0.283 Sum_probs=35.3
Q ss_pred CCCceeEE-eCCCCCceeEEeeecceeEEcCCCCeeeec
Q psy2574 28 PNSYFMDV-KCPGCYKITTVFSHAQSVVICAGCSTILCQ 65 (115)
Q Consensus 28 PnS~Fm~V-KCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~ 65 (115)
.+|+|+.+ +||+|++.++||.+++..+.|..||.+|.+
T Consensus 4 ~~~~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGD 42 (58)
T ss_dssp CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECC
T ss_pred chhhccccccCcCCCCCceeEeCCCCeEEeCCCCCEEec
Confidence 37889999 999999999999999999999999999965
No 7
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=96.78 E-value=0.00069 Score=40.82 Aligned_cols=31 Identities=19% Similarity=0.689 Sum_probs=28.4
Q ss_pred EeCCCCCceeEEeeecceeEEcCCCCeeeec
Q psy2574 35 VKCPGCYKITTVFSHAQSVVICAGCSTILCQ 65 (115)
Q Consensus 35 VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~ 65 (115)
++||.|+..+++|..++....|..||.++.+
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 4799999999999999999999999999854
No 8
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.11 E-value=0.012 Score=47.53 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=28.8
Q ss_pred EEeCCCCCc--eeEEeeecceeEEcCCCCeeeec
Q psy2574 34 DVKCPGCYK--ITTVFSHAQSVVICAGCSTILCQ 65 (115)
Q Consensus 34 ~VKCp~C~n--~q~VFSHAqt~V~C~~Cg~vL~~ 65 (115)
..+||+|+. ..+|+.+++....|..||.||-+
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e 54 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEES
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccC
Confidence 568999996 78999999999999999999975
No 9
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.018 Score=46.03 Aligned_cols=31 Identities=29% Similarity=0.655 Sum_probs=28.3
Q ss_pred EeCCCCCce--eEEeeecceeEEcCCCCeeeec
Q psy2574 35 VKCPGCYKI--TTVFSHAQSVVICAGCSTILCQ 65 (115)
Q Consensus 35 VKCp~C~n~--q~VFSHAqt~V~C~~Cg~vL~~ 65 (115)
.+||.|+.. .+|+.+++-.+.|..||.||-+
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e 54 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEccc
Confidence 579999997 6999999999999999999954
No 10
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.054 Score=42.45 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=29.1
Q ss_pred eEEeCCCCCc--eeEEeeecceeEEcCCCCeeeec
Q psy2574 33 MDVKCPGCYK--ITTVFSHAQSVVICAGCSTILCQ 65 (115)
Q Consensus 33 m~VKCp~C~n--~q~VFSHAqt~V~C~~Cg~vL~~ 65 (115)
...+||.|+. ..+|++++.-...|..||.||-+
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEE 54 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCC
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCC
Confidence 3458999998 57999999999999999999954
No 11
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=92.31 E-value=0.066 Score=36.26 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=32.2
Q ss_pred HhhcccccccCCCCceeEEeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 17 RKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 17 ~k~K~krLV~~PnS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
||.-+|+.+.... +-+||.|+. ..+|..++-...|..||.+.+
T Consensus 14 Rk~vk~ie~~q~~----~y~Cp~CG~-~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 14 RRRVAEIESEMNE----DHACPNCGE-DRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp HHHHHHHHHHHHS----CEECSSSCC-EEEEEEETTEEEETTTCCEEE
T ss_pred HHHHHHHHHhccc----cCcCCCCCC-cceeccCCCeEECCCCCCEec
Confidence 3333444444443 359999998 689999999999999999873
No 12
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=91.86 E-value=0.22 Score=30.51 Aligned_cols=30 Identities=23% Similarity=0.541 Sum_probs=24.4
Q ss_pred eEEeCCCCCceeEEeeeccee---------EEcCCCCee
Q psy2574 33 MDVKCPGCYKITTVFSHAQSV---------VICAGCSTI 62 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAqt~---------V~C~~Cg~v 62 (115)
..++||.|++...+|...|+. ..|..||..
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 479999999999999988763 577777764
No 13
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=90.60 E-value=0.23 Score=32.85 Aligned_cols=30 Identities=13% Similarity=0.430 Sum_probs=24.3
Q ss_pred eeEEeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 32 FMDVKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 32 Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
|+-|.|| |++..++=. .+-...|. ||++|-
T Consensus 2 Y~vv~C~-C~~~~~~~~-~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSRE-GAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEEEEET-TSCCEEEET-TCSEEEET-TTEEEE
T ss_pred eEEEECC-CCCEEEEcC-CCcEEECC-CCCeee
Confidence 6789999 999976655 56678998 999984
No 14
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=89.20 E-value=0.17 Score=31.14 Aligned_cols=29 Identities=24% Similarity=0.604 Sum_probs=23.7
Q ss_pred EEeCCCCCceeEEeeeccee---------EEcCCCCee
Q psy2574 34 DVKCPGCYKITTVFSHAQSV---------VICAGCSTI 62 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAqt~---------V~C~~Cg~v 62 (115)
+++||.|++...+|-..|+. ..|..||..
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 57999999999999987653 788888753
No 15
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=86.92 E-value=0.65 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.667 Sum_probs=21.2
Q ss_pred EeCCCCCceeEEeeecceeEEcCCCCeee
Q psy2574 35 VKCPGCYKITTVFSHAQSVVICAGCSTIL 63 (115)
Q Consensus 35 VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL 63 (115)
-+|+.|+|+-.+..-....+.| ||..+
T Consensus 7 Y~C~~CGnivev~~~g~~~l~C--CG~~M 33 (36)
T 1dxg_A 7 YKCELCGQVVKVLEEGGGTLVC--CGEDM 33 (36)
T ss_dssp EECTTTCCEEEEEECCSSCEEE--TTEEC
T ss_pred EEcCCCCcEEEEEeCCCcCEEe--CCccc
Confidence 4799999998888777777777 66655
No 16
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=84.72 E-value=0.8 Score=26.39 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=21.8
Q ss_pred EeCCCCCceeEEeee--cceeEEcCCCCee
Q psy2574 35 VKCPGCYKITTVFSH--AQSVVICAGCSTI 62 (115)
Q Consensus 35 VKCp~C~n~q~VFSH--Aqt~V~C~~Cg~v 62 (115)
|.|+.|++..+.+.. -.....|..||..
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 679999998887775 4556779999875
No 17
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=84.30 E-value=0.28 Score=32.23 Aligned_cols=33 Identities=21% Similarity=0.530 Sum_probs=26.7
Q ss_pred eEEeCCCCCceeEEeeecceeEEcCCCCe-eeeccc
Q psy2574 33 MDVKCPGCYKITTVFSHAQSVVICAGCST-ILCQPT 67 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAqt~V~C~~Cg~-vL~~PT 67 (115)
|.-+|++|+.+.-+ |....|.|..||. +|-+..
T Consensus 27 v~Y~C~~CG~~~e~--~~~d~irCp~CG~RILyK~R 60 (70)
T 1twf_L 27 LKYICAECSSKLSL--SRTDAVRCKDCGHRILLKAR 60 (70)
T ss_dssp CCEECSSSCCEECC--CTTSTTCCSSSCCCCCBCCC
T ss_pred EEEECCCCCCccee--CCCCCccCCCCCceEeEecC
Confidence 55689999998655 5778899999999 887664
No 18
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=82.99 E-value=0.28 Score=33.78 Aligned_cols=36 Identities=17% Similarity=0.429 Sum_probs=27.6
Q ss_pred eEEeCCCCCceeEEeeecceeE-EcCCCCeeeecccCCce
Q psy2574 33 MDVKCPGCYKITTVFSHAQSVV-ICAGCSTILCQPTGGRA 71 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAqt~V-~C~~Cg~vL~~PTGGKA 71 (115)
...+|.+|+++-.+ ..... .|+.||....+..+|+-
T Consensus 72 ~~~~C~~CG~~~e~---~~~~~~~CP~Cgs~~~~i~~G~e 108 (119)
T 2kdx_A 72 VELECKDCSHVFKP---NALDYGVCEKCHSKNVIITQGNE 108 (119)
T ss_dssp CEEECSSSSCEECS---CCSTTCCCSSSSSCCCEEEESSC
T ss_pred ceEEcCCCCCEEeC---CCCCCCcCccccCCCcEEecCCe
Confidence 36899999987544 45567 89999999877777763
No 19
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=80.65 E-value=0.98 Score=29.47 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=22.0
Q ss_pred eCCCCCceeEEeeecceeEEcCCCCeeeec
Q psy2574 36 KCPGCYKITTVFSHAQSVVICAGCSTILCQ 65 (115)
Q Consensus 36 KCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~ 65 (115)
-||+|.+..+.- -.+..|.|..|+...|-
T Consensus 27 wCP~C~~~~~~~-~~~~~v~C~~C~~~FC~ 55 (86)
T 2ct7_A 27 WCAQCSFGFIYE-REQLEATCPQCHQTFCV 55 (86)
T ss_dssp CCSSSCCCEECC-CSCSCEECTTTCCEECS
T ss_pred ECcCCCchheec-CCCCceEeCCCCCcccc
Confidence 399999976543 34677999999988763
No 20
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=80.13 E-value=0.9 Score=31.78 Aligned_cols=33 Identities=33% Similarity=0.724 Sum_probs=26.9
Q ss_pred eEEeCCCCCceeEEeeeccee---------EEcCCCCeeeec
Q psy2574 33 MDVKCPGCYKITTVFSHAQSV---------VICAGCSTILCQ 65 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAqt~---------V~C~~Cg~vL~~ 65 (115)
.+++||.|++...+|-..|+. ..|..||..--+
T Consensus 71 t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~ 112 (122)
T 1twf_I 71 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS 112 (122)
T ss_dssp CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred cCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEecc
Confidence 478999999999999987653 689999876544
No 21
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=80.04 E-value=0.91 Score=36.23 Aligned_cols=35 Identities=17% Similarity=0.391 Sum_probs=26.1
Q ss_pred CCCceeEEeCCCCCceeEEeeecce---------eEEcCCCCee
Q psy2574 28 PNSYFMDVKCPGCYKITTVFSHAQS---------VVICAGCSTI 62 (115)
Q Consensus 28 PnS~Fm~VKCp~C~n~q~VFSHAqt---------~V~C~~Cg~v 62 (115)
|+..=-.++||.|++...+|...|+ .+.|..||..
T Consensus 262 ~~~~~~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~ 305 (309)
T 1pqv_S 262 ERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNR 305 (309)
T ss_pred cccCcccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCc
Confidence 4443235799999999999987664 4788888863
No 22
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=79.23 E-value=1.4 Score=32.95 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=26.6
Q ss_pred CCCCceeEEeCCCCCcee--EEee------------ecceeEEcCCCCe
Q psy2574 27 HPNSYFMDVKCPGCYKIT--TVFS------------HAQSVVICAGCST 61 (115)
Q Consensus 27 ~PnS~Fm~VKCp~C~n~q--~VFS------------HAqt~V~C~~Cg~ 61 (115)
.|-.||++|||..|+.+. +.++ -|..+.+|..|++
T Consensus 30 ~~~~~~fkvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~r 78 (164)
T 1zso_A 30 DEYLWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPK 78 (164)
T ss_dssp TTCCEEEEEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSC
T ss_pred CCcEEEEEEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCC
Confidence 578899999999998763 2222 4677888888876
No 23
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=77.78 E-value=0.86 Score=32.55 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=26.5
Q ss_pred EEeCCCCCceeEEeeecc-----------e----------eEEcCCCCeeeecccCCce
Q psy2574 34 DVKCPGCYKITTVFSHAQ-----------S----------VVICAGCSTILCQPTGGRA 71 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAq-----------t----------~V~C~~Cg~vL~~PTGGKA 71 (115)
..+|.+|+.+-. -.. . ...|+.||..-.+..+|+-
T Consensus 70 ~~~C~~CG~~~~---~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~e 125 (139)
T 3a43_A 70 VFKCRNCNYEWK---LKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRG 125 (139)
T ss_dssp EEEETTTCCEEE---GGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSC
T ss_pred cEECCCCCCEEe---cccccccccccccccccccccccccCCcCccccCCccEEecCCe
Confidence 589999998744 344 3 6889999998877777764
No 24
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=76.11 E-value=2.1 Score=30.27 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=24.7
Q ss_pred EeCCCCCceeEEeeecceeEEcCCCCeeeeccc
Q psy2574 35 VKCPGCYKITTVFSHAQSVVICAGCSTILCQPT 67 (115)
Q Consensus 35 VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PT 67 (115)
-+|+.|+|+-.+.+-....+.| ||..+-.-+
T Consensus 8 YkC~~CGnivev~~~g~~~l~C--CG~~m~~l~ 38 (126)
T 1vzi_A 8 YKCEVCGNIVEVLNGGIGELVC--CNQDMKLMS 38 (126)
T ss_dssp EECTTTCCEEEEEECCSSCEEE--TTEECEECC
T ss_pred EEcCCCCeEEEEEcCCCcceec--CCccccccc
Confidence 4899999999999888888888 887664433
No 25
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=73.70 E-value=1.8 Score=32.28 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=23.7
Q ss_pred eEEeCCCCCceeEEeeecc---------eeEEcCCCCee
Q psy2574 33 MDVKCPGCYKITTVFSHAQ---------SVVICAGCSTI 62 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAq---------t~V~C~~Cg~v 62 (115)
..++||.|++...+|-..| +-+.|..||..
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~ 174 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNR 174 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCE
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCe
Confidence 4579999999999997654 46778888864
No 26
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.69 E-value=4 Score=24.86 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.1
Q ss_pred eEEeCCCCCceeEEeeecceeEEcCCCCeee
Q psy2574 33 MDVKCPGCYKITTVFSHAQSVVICAGCSTIL 63 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL 63 (115)
+.-.||.|+..-+..+|. ....|..||-+.
T Consensus 18 ~~k~CP~CG~~~fm~~~~-~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHG-DRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECS-SEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCC-CeEECCCCCCEE
Confidence 456799999987788886 567899999765
No 27
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=71.65 E-value=2.7 Score=28.92 Aligned_cols=35 Identities=29% Similarity=0.644 Sum_probs=26.2
Q ss_pred CCCceeEEeCCCCCceeEEeeecce---------eEEcCCCCee
Q psy2574 28 PNSYFMDVKCPGCYKITTVFSHAQS---------VVICAGCSTI 62 (115)
Q Consensus 28 PnS~Fm~VKCp~C~n~q~VFSHAqt---------~V~C~~Cg~v 62 (115)
|+--=.+++||.|++...+|-..|+ ...|..||..
T Consensus 66 ~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 66 PTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp SSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCC
T ss_pred ccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCE
Confidence 3333345899999999999987775 4778888754
No 28
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=68.91 E-value=1.1 Score=31.80 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 34 DVKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
.-+|.+|+++.-.+ .....|+.||..+-
T Consensus 132 ~y~C~~Cg~~~~~~---~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL---PPGGVCPDCGSKVK 159 (165)
T ss_dssp CEEESSSCCEESSC---CGGGBCTTTCCBEE
T ss_pred EEECCCCCCcccCC---CCCCcCCCCCCcce
Confidence 57899999875443 33458999998763
No 29
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=63.69 E-value=3.6 Score=29.25 Aligned_cols=32 Identities=22% Similarity=0.687 Sum_probs=17.0
Q ss_pred CCCceeEEeCCCCCceeEEeeecceeEEcCCCCee
Q psy2574 28 PNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTI 62 (115)
Q Consensus 28 PnS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~v 62 (115)
|+|.-|+..||.|.++-.- . .....|..|...
T Consensus 26 ~~~~~M~~~CP~Cq~eL~~-~--g~~~hC~~C~~~ 57 (101)
T 2jne_A 26 PRGSHMELHCPQCQHVLDQ-D--NGHARCRSCGEF 57 (101)
T ss_dssp -----CCCBCSSSCSBEEE-E--TTEEEETTTCCE
T ss_pred cCcccccccCccCCCccee-c--CCEEECccccch
Confidence 4666699999999987432 1 123346666653
No 30
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=62.50 E-value=4 Score=28.93 Aligned_cols=30 Identities=20% Similarity=0.034 Sum_probs=20.4
Q ss_pred eCCC-CCceeEEeeecceeEEcCCCCeeeeccc
Q psy2574 36 KCPG-CYKITTVFSHAQSVVICAGCSTILCQPT 67 (115)
Q Consensus 36 KCp~-C~n~q~VFSHAqt~V~C~~Cg~vL~~PT 67 (115)
||+. |+|+-.++.-+...+.| ||..+-.-+
T Consensus 9 kC~~~CGnivev~~~g~~~l~C--CG~~m~~l~ 39 (128)
T 1y07_A 9 LQKESAGFFLGMDAPAGSSVAC--GSEVLRAVP 39 (128)
T ss_dssp CC-----CEEEESCCTTCEEEE--TTEEEECCC
T ss_pred ECCCCCCCEEEEEcCCCcceee--cCccccccc
Confidence 6999 99999999888888888 887664433
No 31
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=57.72 E-value=5.1 Score=30.28 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.6
Q ss_pred EeCCCCCceeEEeee----cceeEEcCCCCeee
Q psy2574 35 VKCPGCYKITTVFSH----AQSVVICAGCSTIL 63 (115)
Q Consensus 35 VKCp~C~n~q~VFSH----Aqt~V~C~~Cg~vL 63 (115)
|.|+.|.+..+.... -.....|..||..-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCcc
Confidence 999999999988887 55778999998753
No 32
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.59 E-value=4.1 Score=25.39 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=24.4
Q ss_pred eEEeCCCCCceeEEeeecceeEEcCCCCeeeeccc
Q psy2574 33 MDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPT 67 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PT 67 (115)
.+-.||.|+.. -+.....|..||.+.-+|.
T Consensus 13 ~k~iCpkC~a~-----~~~gaw~CrKCG~~~lr~k 42 (51)
T 3j21_g 13 KKYVCLRCGAT-----NPWGAKKCRKCGYKRLRPK 42 (51)
T ss_dssp SEEECTTTCCE-----ECTTCSSCSSSSSCCCEEE
T ss_pred CCccCCCCCCc-----CCCCceecCCCCCcccccc
Confidence 34579999997 6778889999999977764
No 33
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.51 E-value=6.3 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.5
Q ss_pred EeCCCCCceeEEeee----cceeEEcCCCCeee
Q psy2574 35 VKCPGCYKITTVFSH----AQSVVICAGCSTIL 63 (115)
Q Consensus 35 VKCp~C~n~q~VFSH----Aqt~V~C~~Cg~vL 63 (115)
|.|+.|++..+.... -.....|..||..=
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 999999999988885 44788999999753
No 34
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=55.19 E-value=2.5 Score=30.37 Aligned_cols=30 Identities=30% Similarity=0.606 Sum_probs=0.0
Q ss_pred eEEeCCCCCceeEEeeecce---------eEEcCCCCee
Q psy2574 33 MDVKCPGCYKITTVFSHAQS---------VVICAGCSTI 62 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAqt---------~V~C~~Cg~v 62 (115)
.+++||.|++...+|--.|+ ...|..||..
T Consensus 91 t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~ 129 (133)
T 3qt1_I 91 SDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHR 129 (133)
T ss_dssp ---------------------------------------
T ss_pred ccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCE
Confidence 46899999999999987665 4568777754
No 35
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=54.71 E-value=11 Score=24.98 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=30.5
Q ss_pred HhhcccccccCCCCceeEEeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 17 RKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 17 ~k~K~krLV~~PnS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
||.=+|+.+..+.-| .||-|++. -+--.+.-...|..|+.+.+
T Consensus 14 RK~vkkie~~q~~ky----~C~fCgk~-~vkR~a~GIW~C~~C~~~~A 56 (73)
T 1ffk_W 14 RVRVRDVEIKHKKKY----KCPVCGFP-KLKRASTSIWVCGHCGYKIA 56 (73)
T ss_pred HHHHHHHHHhcccCc----cCCCCCCc-eeEEEEeEEEECCCCCcEEE
Confidence 444455555555444 79999976 45556778899999999974
No 36
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=52.77 E-value=14 Score=24.31 Aligned_cols=41 Identities=27% Similarity=0.513 Sum_probs=28.4
Q ss_pred CCceeEEeCCCCCceeEEeeecceeEEcCCCCeeeecccCCc
Q psy2574 29 NSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGR 70 (115)
Q Consensus 29 nS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PTGGK 70 (115)
+.....+.|.+|++...+--|--. .+|..|+.-=.+-++|+
T Consensus 32 ~~~~v~I~CnDC~~~s~v~~h~lg-~kC~~C~SyNTr~~~G~ 72 (79)
T 2k2d_A 32 QNMTVDILCNDCNGRSTVQFHILG-MKCKICESYNTAQAGGR 72 (79)
T ss_dssp -CCEEEEEESSSCCEEEEECCTTC-CCCTTTSCCCEEESCCC
T ss_pred hCCEeEEECCCCCCCccCCceeec-ccCcCCCCcCeEecCCC
Confidence 455678999999999888665432 26999997655544444
No 37
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=52.68 E-value=6 Score=28.99 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEeCCCCCceeEEeeecceeEEcCCCCee
Q psy2574 34 DVKCPGCYKITTVFSHAQSVVICAGCSTI 62 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAqt~V~C~~Cg~v 62 (115)
.-+|+.|+.+-. ...+..|++||..
T Consensus 138 ~~~C~~CG~i~~----~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAV----DEAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEE----SCCCSBCTTTCCB
T ss_pred eeEeCCCCCeeC----CCCCCCCCCCCCC
Confidence 345999999876 4566699999963
No 38
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=52.29 E-value=11 Score=25.47 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=21.7
Q ss_pred eCCCCCce---eEEeee--cceeEEcCCCCeeee
Q psy2574 36 KCPGCYKI---TTVFSH--AQSVVICAGCSTILC 64 (115)
Q Consensus 36 KCp~C~n~---q~VFSH--Aqt~V~C~~Cg~vL~ 64 (115)
.||-|+++ .+..++ -...+.|.+||...-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEE
Confidence 79999998 445544 367899999997543
No 39
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=52.24 E-value=14 Score=26.60 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=25.0
Q ss_pred EEeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 34 DVKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
+..||-|++. -+--.|.-.-.|..|+.+++
T Consensus 60 kytCPfCGk~-~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 60 DHACPNCGED-RVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp CEECSSSCCE-EEEEEETTEEEETTTCCEEE
T ss_pred CCcCCCCCCc-eeEecCceeEECCCCCCEEE
Confidence 3589999985 56777888899999999984
No 40
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=51.93 E-value=13 Score=24.20 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=36.1
Q ss_pred eeEEeCCCCCceeEEeee-cceeEEcCCCCeeeecccCCceeeccCCCCc-------cEEEEEeecCC
Q psy2574 32 FMDVKCPGCYKITTVFSH-AQSVVICAGCSTILCQPTGGRARLTEDDTGD-------SMTVRGCALDS 91 (115)
Q Consensus 32 Fm~VKCp~C~n~q~VFSH-Aqt~V~C~~Cg~vL~~PTGGKA~l~egc~f~-------s~~~~~ca~ds 91 (115)
=|.+.|++|+..+-+-.- ......|..|+..+ |.|.-..+.+ =.|+ -+.|-+-|..|
T Consensus 3 ~~~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~--~~~~v~~l~~-~~~~~~~~~~k~vlv~F~a~wC 67 (148)
T 3p2a_A 3 AMNTVCTACMATNRLPEERIDDGAKCGRCGHSL--FDGEVINATA-ETLDKLLQDDLPMVIDFWAPWC 67 (148)
T ss_dssp EEEEECTTTCCEEEEESSCSCSCCBCTTTCCBT--TCCCCEECCT-TTHHHHTTCSSCEEEEEECSSC
T ss_pred ccEEECcccccccCCCCcccccCCcchhcCCcc--ccCCceecCH-HHHHHHHhcCCcEEEEEECCCC
Confidence 367889999998866553 45567799999987 5554444433 3332 25555555444
No 41
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=51.87 E-value=7.8 Score=23.96 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=22.0
Q ss_pred EEeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 34 DVKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
.-.||.|++.-+.=+|. ....|..||-+.-
T Consensus 18 ~~fCPkCG~~~~ma~~~-dr~~C~kCgyt~~ 47 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHA-DRYSCGRCGYTEF 47 (55)
T ss_dssp SCCCTTTTTTCCCEECS-SEEECTTTCCCEE
T ss_pred cccCcCCCCceeEeccC-CEEECCCCCCEEE
Confidence 46799999955333554 5889999998753
No 42
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=51.31 E-value=5.4 Score=27.48 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=23.9
Q ss_pred eCCCCCceeEEeeecceeEEcCCCCeeeeccc
Q psy2574 36 KCPGCYKITTVFSHAQSVVICAGCSTILCQPT 67 (115)
Q Consensus 36 KCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PT 67 (115)
+|+ |++-+|.+ +.--...|..||..--+.+
T Consensus 50 kC~-C~~Rt~sl-~r~P~~~C~~Cg~~~wer~ 79 (92)
T 2kwq_A 50 KCP-CGNRTISL-DRLPKKHCSTCGLFKWERV 79 (92)
T ss_dssp ECT-TSCEEEES-SSSCCSCCTTTCSCCCEEE
T ss_pred ECC-CCCceeEe-eeCCCCCCCCCCCCceEEe
Confidence 796 99999999 5666669999998755544
No 43
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=50.96 E-value=12 Score=28.51 Aligned_cols=31 Identities=23% Similarity=0.631 Sum_probs=22.2
Q ss_pred eeEEeCCCCCceeEEee---------ecceeEEcCCCCeee
Q psy2574 32 FMDVKCPGCYKITTVFS---------HAQSVVICAGCSTIL 63 (115)
Q Consensus 32 Fm~VKCp~C~n~q~VFS---------HAqt~V~C~~Cg~vL 63 (115)
-+.++||+|+.+. +|. +...-+.|..|+..+
T Consensus 20 ~l~l~Cp~C~~~~-~F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 20 TLELSCPSCDKRF-PFGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp CEEEECTTTCCEE-EECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred eeEEECCCCCCcc-CCCCcccCCCcccccccccCCCCCCcC
Confidence 4789999999865 465 233456788888865
No 44
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=46.53 E-value=7.5 Score=24.94 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=17.3
Q ss_pred EEeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 34 DVKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
-.+|+.|+.-++ .-.|..||..+-
T Consensus 6 mr~C~~CgvYTL-------k~~CP~CG~~T~ 29 (60)
T 2apo_B 6 MKKCPKCGLYTL-------KEICPKCGEKTV 29 (60)
T ss_dssp CEECTTTCCEES-------SSBCSSSCSBCB
T ss_pred ceeCCCCCCEec-------cccCcCCCCcCC
Confidence 468999977766 334888887653
No 45
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=44.51 E-value=5 Score=25.95 Aligned_cols=29 Identities=28% Similarity=0.537 Sum_probs=22.9
Q ss_pred eEEeCCCCCceeEEeeecceeEEcCCCCeee
Q psy2574 33 MDVKCPGCYKITTVFSHAQSVVICAGCSTIL 63 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL 63 (115)
|.-+|.+|+.+.-+= +...|.|..||.-+
T Consensus 20 v~Y~C~~Cg~~~~l~--~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ--AKEVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCC--SSSCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecC--CCCceECCCCCcEE
Confidence 667899999887643 56889999998644
No 46
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=44.43 E-value=2.1 Score=31.23 Aligned_cols=36 Identities=19% Similarity=0.587 Sum_probs=23.1
Q ss_pred CCCCceeE--EeCCCCCceeEEeeec--ceeEEcCCCCee
Q psy2574 27 HPNSYFMD--VKCPGCYKITTVFSHA--QSVVICAGCSTI 62 (115)
Q Consensus 27 ~PnS~Fm~--VKCp~C~n~q~VFSHA--qt~V~C~~Cg~v 62 (115)
.-=-.|++ |.|+.|++..+....- .....|..||..
T Consensus 94 ~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 94 TLMERFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp STTTTTSSCCSSCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred HHHHHHHHHeeECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 33344566 9999999988877653 356789999864
No 47
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.21 E-value=9.9 Score=30.55 Aligned_cols=33 Identities=18% Similarity=0.539 Sum_probs=19.8
Q ss_pred ceeEEeCCCCCceeE-Eee-----------ecceeEEcCCCCeee
Q psy2574 31 YFMDVKCPGCYKITT-VFS-----------HAQSVVICAGCSTIL 63 (115)
Q Consensus 31 ~Fm~VKCp~C~n~q~-VFS-----------HAqt~V~C~~Cg~vL 63 (115)
+|.+++||.|+|..- -|- -+--+-.|..|++-|
T Consensus 219 ~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 219 HYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp ECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred eecCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 567788888888432 221 112355677777655
No 48
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=41.57 E-value=4.8 Score=29.67 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=22.3
Q ss_pred EeCCCCCceeEEeee--cceeEEcCCCCee
Q psy2574 35 VKCPGCYKITTVFSH--AQSVVICAGCSTI 62 (115)
Q Consensus 35 VKCp~C~n~q~VFSH--Aqt~V~C~~Cg~v 62 (115)
|.|+.|++..+.... -.....|..||..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCC
Confidence 999999998877765 3367789999864
No 49
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=40.35 E-value=6.2 Score=28.64 Aligned_cols=31 Identities=23% Similarity=0.580 Sum_probs=24.0
Q ss_pred eeE--EeCCCCCceeEEeee--cceeEEcCCCCee
Q psy2574 32 FMD--VKCPGCYKITTVFSH--AQSVVICAGCSTI 62 (115)
Q Consensus 32 Fm~--VKCp~C~n~q~VFSH--Aqt~V~C~~Cg~v 62 (115)
|++ |.|+.|++..+.... -.....|..||..
T Consensus 98 yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 98 YVNKFVICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp HHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred HHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 444 999999998777664 4477899999864
No 50
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.48 E-value=14 Score=21.13 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=21.7
Q ss_pred EeCCCCCceeEE-----eeec-ceeEEcCCCCeeeeccc
Q psy2574 35 VKCPGCYKITTV-----FSHA-QSVVICAGCSTILCQPT 67 (115)
Q Consensus 35 VKCp~C~n~q~V-----FSHA-qt~V~C~~Cg~vL~~PT 67 (115)
-+|+.|++.-.- -.|+ .-.-.|..||..+.+..
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECT
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCc
Confidence 579999872110 1233 35678999999887665
No 51
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.57 E-value=23 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=23.8
Q ss_pred EeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 35 VKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 35 VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
-.||-|++.. |--.|.-.-.|..|+.++|
T Consensus 36 y~CpfCGk~~-vkR~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 36 HTCPVCGRKA-VKRISTGIWQCQKCGATFA 64 (83)
T ss_dssp BCCSSSCSSC-EEEEETTEEEETTTCCEEE
T ss_pred cCCCCCCCce-eEecCcCeEEcCCCCCEEe
Confidence 4699999985 5556777779999999985
No 52
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=36.02 E-value=33 Score=24.91 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=20.6
Q ss_pred eEEeCCCCCceeEEeeecc------eeEEcCCCCeee
Q psy2574 33 MDVKCPGCYKITTVFSHAQ------SVVICAGCSTIL 63 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAq------t~V~C~~Cg~vL 63 (115)
+.++|+.|+.+++..-|.. ..-.|..||..|
T Consensus 77 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 113 (166)
T 3ir9_A 77 VTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSL 113 (166)
T ss_dssp EEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBE
T ss_pred EEEECCCCCceeEEEeecChhhcccccccccccCccc
Confidence 4589999998776654332 223699998753
No 53
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.27 E-value=13 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.516 Sum_probs=20.6
Q ss_pred EeCCCCCceeEEe-eecceeEEcCCCCeee
Q psy2574 35 VKCPGCYKITTVF-SHAQSVVICAGCSTIL 63 (115)
Q Consensus 35 VKCp~C~n~q~VF-SHAqt~V~C~~Cg~vL 63 (115)
.+|.+|++. | +.-..++.|..|+..=
T Consensus 68 ~~C~~CG~~---F~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFV---FKAEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCB---CCCCSSCCSSCSSSCCCC
T ss_pred cChhhCcCe---ecccCCCCCCCcCCCCCc
Confidence 689999998 5 5556779999998643
No 54
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=34.78 E-value=20 Score=21.93 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=15.4
Q ss_pred eEEcCCCCeeeecccCCcee
Q psy2574 53 VVICAGCSTILCQPTGGRAR 72 (115)
Q Consensus 53 ~V~C~~Cg~vL~~PTGGKA~ 72 (115)
...|..||+.|.+..+|+.+
T Consensus 18 ~~~C~~CG~~i~~~~~~r~k 37 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSK 37 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTS
T ss_pred CCcChhccCccccccCCCCC
Confidence 45699999999887777654
No 55
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=34.41 E-value=41 Score=23.70 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=23.6
Q ss_pred EeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 35 VKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 35 VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
-.||-|++.. |--.+.-.-.|..|+.+++
T Consensus 37 y~CpfCgk~~-vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 37 YGCPFCGKVA-VKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp EECTTTCCEE-EEEEETTEEEETTTTEEEE
T ss_pred CCCCCCCCce-eeecCcceEEcCCCCCEEe
Confidence 4799999885 5556777779999999985
No 56
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=33.06 E-value=22 Score=25.64 Aligned_cols=17 Identities=41% Similarity=0.796 Sum_probs=14.2
Q ss_pred CceeEEeCCCCCceeEE
Q psy2574 30 SYFMDVKCPGCYKITTV 46 (115)
Q Consensus 30 S~Fm~VKCp~C~n~q~V 46 (115)
.-||..|||.|+.+--|
T Consensus 48 gvfmhakcprcgaegsv 64 (131)
T 2x5c_A 48 GVFMHAKCPRCGAEGSV 64 (131)
T ss_dssp TCCCEEECTTTSCEEEE
T ss_pred hheeeccCCCCCCccce
Confidence 56999999999987643
No 57
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=31.44 E-value=32 Score=23.70 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=23.0
Q ss_pred eCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 36 KCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 36 KCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
.||-|++.. |--.|.-.-.|..|+.+++
T Consensus 38 ~CpfCgk~~-vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 38 FCEFCGKFA-VKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp CCTTTCSSC-BEEEETTEEECSSSCCEEE
T ss_pred cCcccCCCe-eEecCcceEEcCCCCCEEe
Confidence 799999985 4556677779999999985
No 58
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=31.29 E-value=58 Score=23.13 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCceeEEeCCCCCceeEEeeecceeEEcCCCCeee--ecccC-Cceee
Q psy2574 29 NSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTIL--CQPTG-GRARL 73 (115)
Q Consensus 29 nS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL--~~PTG-GKA~l 73 (115)
+.+++--+|.+|+..+ +.-.. .|..|+..- -.+-. |++.|
T Consensus 42 ~g~L~~~rC~~CG~~~----fPPr~-~Cp~C~s~~~e~v~ls~g~GtV 84 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIF----VPARS-YCEHCFVKIENYVEINKDEAYV 84 (145)
T ss_dssp TTCCEEEECTTTCCEE----ESCCS-EETTTTEECCEEEECCGGGCEE
T ss_pred CCEEEEEEECCCCcEE----eCCCC-CCCCCCCCccEEEEccCCcEEE
Confidence 4578889999999874 23222 599998762 22344 66655
No 59
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=30.82 E-value=6.6 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=14.6
Q ss_pred CCCCCccceeEEeeccccee
Q psy2574 91 SGTPTTDTELIRMSHCGGFY 110 (115)
Q Consensus 91 s~~~~~d~~~~~~~~~~~~~ 110 (115)
-|.||+|+||=.|-- .||+
T Consensus 19 RNrpltDEeLD~mLP-~GYk 37 (39)
T 3lqv_P 19 RNRPLSDEELDAMFP-EGYK 37 (39)
T ss_dssp TTCCCCHHHHHHTCC-SSEE
T ss_pred hcCCCCHHHHHHhCC-CCcc
Confidence 589999999877655 5655
No 60
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=30.15 E-value=30 Score=26.14 Aligned_cols=37 Identities=24% Similarity=0.627 Sum_probs=25.3
Q ss_pred CCCCceeEEeCCCCCceeEEeeec-----ceeEEcCCCCeeeeccc
Q psy2574 27 HPNSYFMDVKCPGCYKITTVFSHA-----QSVVICAGCSTILCQPT 67 (115)
Q Consensus 27 ~PnS~Fm~VKCp~C~n~q~VFSHA-----qt~V~C~~Cg~vL~~PT 67 (115)
+.-..+..++|..|+++ |+.. ..+-.|..||..| +|.
T Consensus 114 elHG~~~~~~C~~C~~~---~~~~~~~~~~~~p~C~~Cgg~l-rP~ 155 (249)
T 1m2k_A 114 HLHGSLRVVRCTSCNNS---FEVESAPKIPPLPKCDKCGSLL-RPG 155 (249)
T ss_dssp ETTEEEEEEEESSSSCE---EECSSCCCSSSCCBCSSSSSBE-EEE
T ss_pred EecCCcceeEeCCCCCc---ccchhhccCCCCCCCCCCCCCc-CCe
Confidence 44566788999999983 4432 2356899998765 453
No 61
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=28.75 E-value=30 Score=26.24 Aligned_cols=37 Identities=14% Similarity=0.488 Sum_probs=25.5
Q ss_pred CCCCceeEEeCCCCCceeEEeee--------cceeEEcCCCCe-eeeccc
Q psy2574 27 HPNSYFMDVKCPGCYKITTVFSH--------AQSVVICAGCST-ILCQPT 67 (115)
Q Consensus 27 ~PnS~Fm~VKCp~C~n~q~VFSH--------Aqt~V~C~~Cg~-vL~~PT 67 (115)
+--..+..++|..|++. |+. ...+-.|..||. +| +|.
T Consensus 116 elHG~~~~~~C~~C~~~---~~~~~~~~~~~~~~~p~C~~Cgg~~l-rP~ 161 (253)
T 1ma3_A 116 ELHGSMDKLDCLDCHET---YDWSEFVEDFNKGEIPRCRKCGSYYV-KPR 161 (253)
T ss_dssp ETTEEEEEEEETTTCCE---EEGGGTHHHHHTTCCCCCTTTCCSCE-EEE
T ss_pred EeCCCcCeeeeCCCCCc---CcHHHHHHHhccCCCCCCCCCCCccc-cce
Confidence 34567788999999984 553 224568999997 43 553
No 62
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=28.58 E-value=25 Score=24.67 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=7.9
Q ss_pred eEEeCCCCCceeEE
Q psy2574 33 MDVKCPGCYKITTV 46 (115)
Q Consensus 33 m~VKCp~C~n~q~V 46 (115)
+-|+||+|.|.-+|
T Consensus 37 Viv~C~gC~n~HlI 50 (100)
T 2e2z_A 37 VLISCPHCKVRHLI 50 (100)
T ss_dssp EEEECTTTCCEEES
T ss_pred EEEEcCCCccceEe
Confidence 34566666665554
No 63
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.28 E-value=32 Score=23.10 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=4.5
Q ss_pred EcCCCCeee
Q psy2574 55 ICAGCSTIL 63 (115)
Q Consensus 55 ~C~~Cg~vL 63 (115)
.|..||..|
T Consensus 33 fCPeCgq~L 41 (81)
T 2jrp_A 33 LCPDCRQPL 41 (81)
T ss_dssp ECSSSCSCC
T ss_pred cCcchhhHH
Confidence 455555444
No 64
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=28.12 E-value=38 Score=23.37 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=23.1
Q ss_pred EeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 35 VKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 35 VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
-.||-|++.. |--.|.-.-.|..|+.++|
T Consensus 37 y~CpfCgk~~-vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 37 YDCSFCGKKT-VKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCCSSSCSSC-CEEEETTEEECTTTCCEEE
T ss_pred CcCCCCCCce-eeecccceEEcCCCCCEEe
Confidence 4699999885 4556667779999999885
No 65
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=28.04 E-value=30 Score=26.01 Aligned_cols=37 Identities=19% Similarity=0.582 Sum_probs=25.5
Q ss_pred CCCCceeEEeCCCCCceeEEeeec--------ceeEEcCCCCeeeeccc
Q psy2574 27 HPNSYFMDVKCPGCYKITTVFSHA--------QSVVICAGCSTILCQPT 67 (115)
Q Consensus 27 ~PnS~Fm~VKCp~C~n~q~VFSHA--------qt~V~C~~Cg~vL~~PT 67 (115)
+.-..+..++|..|++. |+.. ..+-.|..||.+| +|.
T Consensus 114 elHG~~~~~~C~~C~~~---~~~~~~~~~~~~~~~p~C~~Cgg~l-rP~ 158 (246)
T 1yc5_A 114 ELHGNVEEYYCVRCEKK---YTVEDVIKKLESSDVPLCDDCNSLI-RPN 158 (246)
T ss_dssp ETTEEEEEEEETTTCCE---EEHHHHHHHTTTCSSCBCTTTCCBE-EEE
T ss_pred EecCccceeEcCCCCCC---CcHHHHHHHhccCCCCCCCCCCCcc-Ccc
Confidence 44566788999999984 4421 1456899998765 553
No 66
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=27.17 E-value=37 Score=23.56 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=20.7
Q ss_pred eEEeCCCCCceeEEeeecc---eeEEcCCCCeee
Q psy2574 33 MDVKCPGCYKITTVFSHAQ---SVVICAGCSTIL 63 (115)
Q Consensus 33 m~VKCp~C~n~q~VFSHAq---t~V~C~~Cg~vL 63 (115)
.-.-|+ |+..=.|+.--- .+|.|.+|+..+
T Consensus 111 f~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCSl~~ 143 (155)
T 2l6l_A 111 FYLSCR-CGGKYSVSKDEAEEVSLISCDTCSLII 143 (155)
T ss_dssp EEEECS-SSCEEEEETTHHHHCCEEECSSSSCEE
T ss_pred EEEcCC-CCCeEEecHHHhCCCCEEECCCCceEE
Confidence 346798 997755443222 589999999876
No 67
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=26.15 E-value=24 Score=22.56 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=14.9
Q ss_pred EeCCCCCceeEEeeecceeEEcCCCCeeee
Q psy2574 35 VKCPGCYKITTVFSHAQSVVICAGCSTILC 64 (115)
Q Consensus 35 VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~ 64 (115)
.+|+.|+.-+. .-.|..||....
T Consensus 6 r~C~~Cg~YTL-------k~~CP~CG~~t~ 28 (60)
T 2aus_D 6 RKCPKCGRYTL-------KETCPVCGEKTK 28 (60)
T ss_dssp EECTTTCCEES-------SSBCTTTCSBCE
T ss_pred eECCCCCCEEc-------cccCcCCCCccC
Confidence 57888866554 234778876653
No 68
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=25.71 E-value=27 Score=23.28 Aligned_cols=33 Identities=33% Similarity=0.792 Sum_probs=23.8
Q ss_pred cccCCCCceeEEeCCCCCceeEEeeecceeEEcCCCCee
Q psy2574 24 LVQHPNSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTI 62 (115)
Q Consensus 24 LV~~PnS~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~v 62 (115)
.|.+.+++- .+|-.|++++ .-.+.+.|..||..
T Consensus 7 ~Ir~~k~~i--LrC~aCf~~t----~~~~k~FCp~CGn~ 39 (79)
T 2con_A 7 GVREARSYI--LRCHGCFKTT----SDMNRVFCGHCGNK 39 (79)
T ss_dssp CCCCCCCEE--EECSSSCCEE----SCSSCCSCSSSCCS
T ss_pred Eeeeeeeee--eEecccceEC----CCcccccccccCcc
Confidence 344555543 5799999986 55678899999963
No 69
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=24.70 E-value=68 Score=21.39 Aligned_cols=28 Identities=25% Similarity=0.661 Sum_probs=19.0
Q ss_pred EEeCCCCCceeEEee-----ecceeEEcCCCCeee
Q psy2574 34 DVKCPGCYKITTVFS-----HAQSVVICAGCSTIL 63 (115)
Q Consensus 34 ~VKCp~C~n~q~VFS-----HAqt~V~C~~Cg~vL 63 (115)
.--|| |+ -...++ ....+|.|.+|+-.|
T Consensus 23 ~ypCr-CG-d~F~it~edL~~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 23 TYPCP-CG-DRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83)
T ss_dssp EEEET-TT-EEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred EEeCC-CC-CeEEECHHHHhCCCEEEECCCCccEE
Confidence 34577 88 444555 335789999999765
No 70
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=23.93 E-value=69 Score=21.74 Aligned_cols=28 Identities=29% Similarity=0.662 Sum_probs=19.2
Q ss_pred EEeCCCCCceeEEee-----ecceeEEcCCCCeee
Q psy2574 34 DVKCPGCYKITTVFS-----HAQSVVICAGCSTIL 63 (115)
Q Consensus 34 ~VKCp~C~n~q~VFS-----HAqt~V~C~~Cg~vL 63 (115)
.--|| |+.. ..++ ....+|.|.+|+-.|
T Consensus 23 ~ypCr-CGd~-F~IteedLe~ge~iv~C~sCSL~I 55 (89)
T 2jr7_A 23 FYPCP-CGDN-FSITKEDLENGEDVATCPSCSLII 55 (89)
T ss_dssp EEECT-TSSE-EEEEHHHHHHTCCEEECTTTCCEE
T ss_pred EEcCC-CCCE-EEECHHHHhCCCEEEECCCCccEE
Confidence 34687 8886 4444 224689999999776
No 71
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=23.58 E-value=12 Score=20.82 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=16.5
Q ss_pred EEeCCCCCceeEEeeecceeEEcCCCCee
Q psy2574 34 DVKCPGCYKITTVFSHAQSVVICAGCSTI 62 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAqt~V~C~~Cg~v 62 (115)
|-.|+.|++.+.-. ...|..|++.
T Consensus 6 DW~C~~C~~~Nfa~-----R~~C~~C~~p 29 (33)
T 2k1p_A 6 DWQCKTCSNVNWAR-----RSECNMCNTP 29 (33)
T ss_dssp SCBCSSSCCBCCTT-----CSBCSSSCCB
T ss_pred CcccCCCCCccccc-----cccccccCCc
Confidence 45799998876432 3567888764
No 72
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=23.46 E-value=88 Score=23.10 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=26.1
Q ss_pred ceeEEeCCCCCceeEEeeecceeEEcCCCCeeeeccc
Q psy2574 31 YFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPT 67 (115)
Q Consensus 31 ~Fm~VKCp~C~n~q~VFSHAqt~V~C~~Cg~vL~~PT 67 (115)
.|+---||.|.+--+ .-....-.|..|+.. .+|.
T Consensus 39 ~~~Y~ACp~CnKKV~--~~~~g~~~CekC~~~-~~~~ 72 (172)
T 3u50_C 39 KLYYYRCTCQGKSVL--KYHGDSFFCESCQQF-INPQ 72 (172)
T ss_dssp CCEEEECTTSCCCEE--EETTTEEEETTTTEE-CCCE
T ss_pred cEEehhchhhCCEee--eCCCCeEECCCCCCC-CCce
Confidence 688889999977543 455667789999998 6665
No 73
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.06 E-value=34 Score=25.85 Aligned_cols=32 Identities=22% Similarity=0.657 Sum_probs=23.4
Q ss_pred eCCCCCceeE--Ee---eecceeEEcCCCCeeeeccc
Q psy2574 36 KCPGCYKITT--VF---SHAQSVVICAGCSTILCQPT 67 (115)
Q Consensus 36 KCp~C~n~q~--VF---SHAqt~V~C~~Cg~vL~~PT 67 (115)
.|.||+..=- .| -....+|.|..||.+|..+.
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~~ 236 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAEG 236 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECSC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeCc
Confidence 6999986421 11 13668899999999998764
No 74
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.93 E-value=19 Score=22.25 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=15.3
Q ss_pred cCCCCCCccceeEEeeccccee
Q psy2574 89 LDSGTPTTDTELIRMSHCGGFY 110 (115)
Q Consensus 89 ~ds~~~~~d~~~~~~~~~~~~~ 110 (115)
..-|.||||+||=-|-= .||+
T Consensus 16 ~~rnrpltDEeLD~~LP-~GY~ 36 (47)
T 2fho_A 16 DERNRPLSDEELDAMFP-EGYK 36 (47)
T ss_dssp CCCCCCSCTTHHHHHSC-TTEE
T ss_pred ccccCCCCHHHHHHhCC-CCCe
Confidence 45789999999866654 4554
No 75
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.30 E-value=45 Score=20.95 Aligned_cols=22 Identities=32% Similarity=0.821 Sum_probs=15.6
Q ss_pred EEeCCCCCceeEEeeecceeEEcCCCCe
Q psy2574 34 DVKCPGCYKITTVFSHAQSVVICAGCST 61 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAqt~V~C~~Cg~ 61 (115)
-|+||.|++. .-.|- .|..||.
T Consensus 30 l~~c~~cGe~--~~~H~----vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAM--KPPHT----VCPECGY 51 (60)
T ss_dssp CEECTTTCCE--ECTTS----CCTTTCE
T ss_pred eeECCCCCCe--ecceE----EcCCCCc
Confidence 4999999984 33442 3888884
No 76
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.27 E-value=58 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.538 Sum_probs=17.6
Q ss_pred EEeCCCCCceeEEeeecceeEEcCCCCee
Q psy2574 34 DVKCPGCYKITTVFSHAQSVVICAGCSTI 62 (115)
Q Consensus 34 ~VKCp~C~n~q~VFSHAqt~V~C~~Cg~v 62 (115)
.-+|+.|+.+-. + ..-+-.|++||..
T Consensus 155 ~~~C~~CG~~~~--g-~~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHE--G-TGAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEE--E-EECCSBCTTTCCB
T ss_pred eEEECCCCCEee--C-CCCCCCCCCCcCC
Confidence 578999998844 2 1222389999874
No 77
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=22.22 E-value=16 Score=24.00 Aligned_cols=13 Identities=15% Similarity=0.634 Sum_probs=10.6
Q ss_pred eeEEcCCCCeeee
Q psy2574 52 SVVICAGCSTILC 64 (115)
Q Consensus 52 t~V~C~~Cg~vL~ 64 (115)
.+|+|-.||++|+
T Consensus 3 IPVRCFTCGkvi~ 15 (66)
T 4ayb_N 3 IPIRCFTCGSLIA 15 (66)
T ss_dssp CCSBCTTTCCBCH
T ss_pred CCcccCCCcHhHH
Confidence 3688999999885
No 78
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=21.13 E-value=49 Score=25.54 Aligned_cols=35 Identities=26% Similarity=0.736 Sum_probs=23.6
Q ss_pred CCceeEEeCCCCCceeEEeee-----------cceeEEcCCCCeeeeccc
Q psy2574 29 NSYFMDVKCPGCYKITTVFSH-----------AQSVVICAGCSTILCQPT 67 (115)
Q Consensus 29 nS~Fm~VKCp~C~n~q~VFSH-----------Aqt~V~C~~Cg~vL~~PT 67 (115)
-..+..++|..|+++ |+. ...+-.|..||..| +|.
T Consensus 131 HG~~~~~~C~~C~~~---~~~~~~~~~~~~~~~~~~P~C~~Cgg~l-rP~ 176 (289)
T 1q1a_A 131 HGSFAHCHCIGCGKV---YPPQVFKSKLAEHPIKDFVKCDVCGELV-KPA 176 (289)
T ss_dssp TEEEEEEEETTTCCE---ECHHHHHHHHTCSSCCSCCBCTTTCCBE-EEE
T ss_pred cCCcCceEECCCCCC---CcHHHHHHHHhhccCCCCccCCCCCCEE-CCC
Confidence 456788999999763 332 12356899999755 554
Done!