RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2574
         (115 letters)



>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon
          Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 58

 Score = 88.3 bits (219), Expect = 2e-25
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 29 NSYFMDVKCPGCYKITTVFSHAQSVVICAGCSTILCQPTGGRARLTED 76
          +S F+ VKCP C     +F H  ++V C  C   + +PTGG+  +  +
Sbjct: 2  HSRFVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIKAE 49


>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
          N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 25.9 bits (57), Expect = 0.35
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 35 VKCPGCYKITTVFSHAQSVVICAGCSTIL 63
          V CP       V  +    +IC  C  ++
Sbjct: 12 VTCPNHPDAILVEDYRAGDMICPECGLVV 40


>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 273

 Score = 26.5 bits (57), Expect = 0.69
 Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 36  KCPGCYKITT-VFSHAQSVVICAGCSTIL 63
           KC  C+  +  + +  +   +C  C  ++
Sbjct: 241 KCERCWNYSEDLGAVDELTHLCPRCQQVV 269


>d1zsoa1 b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.257
           {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
          Length = 156

 Score = 26.2 bits (58), Expect = 0.79
 Identities = 13/104 (12%), Positives = 22/104 (21%), Gaps = 33/104 (31%)

Query: 28  PNSYFMDVKCPGCY----KITTVFSH----------AQSVVICAGC---STILCQPTGGR 70
              +  +++          I    +           A  ++        STI    T   
Sbjct: 23  EYLWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTINFVNTKNS 82

Query: 71  ARLTEDDTGDSMTV-----RGCALDSGTPTTDTELIRMSHCGGF 109
               E +  +         RG            ELI       F
Sbjct: 83  CSYEEVNNNEWRDFASFECRGI-----------ELIDFFPSNNF 115


>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
          N-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
          2261]}
          Length = 50

 Score = 24.0 bits (52), Expect = 1.6
 Identities = 6/28 (21%), Positives = 13/28 (46%)

Query: 36 KCPGCYKITTVFSHAQSVVICAGCSTIL 63
           CP C     ++   +  ++CA C  ++
Sbjct: 7  VCPACESAELIYDPERGEIVCAKCGYVI 34


>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas
           palustris [TaxId: 1076]}
          Length = 114

 Score = 24.4 bits (53), Expect = 2.8
 Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 1/52 (1%)

Query: 6   DLLHPSQAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHA-QSVVIC 56
             L  + A               N   +DV  P   +      H   S+VI 
Sbjct: 55  HYLTAASAARLTHALHGGDPAAINPIRLDVVTPDGERAFNGILHRHDSIVIL 106


>d1s12a_ d.64.2.1 (A:) Hypothetical protein TM1457 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 94

 Score = 22.8 bits (49), Expect = 9.3
 Identities = 6/33 (18%), Positives = 9/33 (27%)

Query: 45 TVFSHAQSVVICAGCSTILCQPTGGRARLTEDD 77
           V  HA    +CA  S +            +  
Sbjct: 12 EVTGHAPDKTLCASVSLLTQHVANFLKAEKKAK 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,686
Number of extensions: 17644
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 18
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)