BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2575
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 43 SQACEHIHSNEIILTLGYSKIVELFLKNAAQHRK-FQCIVMENSPENKGHELAVSLAKSK 101
S + I ++I+T +S V ++ A + +K F+ I+ E+SP+ +G LA L S
Sbjct: 101 SIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSG 160
Query: 102 IQTVLIPDSAMFGLISRVNKI-IIGTHTVMANGGLRSVCGTHAVALAAQHYSIPY 155
I+ +I D+ M GL R I I+G + +G + + GT+ +ALA +IP+
Sbjct: 161 IEFEVITDAQM-GLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPF 214
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 49 IHSNEIILTLGYSKIVELFLKNA-AQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLI 107
I ILT YS++V L+ A A ++F V E+ P+ G + A +L + ++
Sbjct: 119 IKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKXAKALCHLNVPVTVV 178
Query: 108 PDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPY 155
D+A+ + + + +I+G V+ NGG+ + GT+ A+ A+ + P+
Sbjct: 179 LDAAVGYIXEKADLVIVGAEGVVENGGIINKIGTNQXAVCAKAQNKPF 226
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 45 ACEHIHSNEIILTLGYSKIVELFLKNAA-QHRKFQCIVMENSPENKGHELAVSLAKSKIQ 103
+ I ++I+T +SK +K A Q + + IV E P+ +G A LA I
Sbjct: 135 GAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIP 194
Query: 104 TVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSI 153
+ + DSA + +K+++G ++ NG + + GT +AL A+ + +
Sbjct: 195 VIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRV 244
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 45 ACEHIHSNEIILTLGYSKIVELFLKNAA-QHRKFQCIVMENSPENKGHELAVSLAKSKIQ 103
+ I ++I+T +SK +K A Q + + IV E P+ +G A LA I
Sbjct: 135 GAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIP 194
Query: 104 TVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSI 153
+ + DSA + +K+++G ++ NG + + GT +AL A+ + +
Sbjct: 195 VIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRV 244
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 45 ACEHIHSNEIILT-LGYSKIVELFLKNAA-QHRKFQCIVMENSPENKGHELAVSLAKSKI 102
+ I ++I+T +SK +K A Q + + IV E P+ +G A LA I
Sbjct: 119 GAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGI 178
Query: 103 QTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSI 153
+ + DSA + +K+++G ++ NG + + GT +AL A+ + +
Sbjct: 179 PVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRV 229
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 45 ACEHIHSNEIILT-LGYSKIVELFLKNAA-QHRKFQCIVMENSPENKGHELAVSLAKSKI 102
+ I ++I+T +SK +K A Q + + IV E P+ +G A LA I
Sbjct: 117 GAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGI 176
Query: 103 QTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSI 153
+ + DSA + +K+++G ++ NG + + GT +AL A+ + +
Sbjct: 177 PVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRV 227
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 45 ACEHIHSNEIILT-LGYSKIVELFLKNAA-QHRKFQCIVMENSPENKGHELAVSLAKSKI 102
+ I ++I+T +SK +K A Q + + IV E P+ +G A LA I
Sbjct: 118 GAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGI 177
Query: 103 QTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSI 153
+ + DSA + +K+++G ++ NG + + GT +AL A+ + +
Sbjct: 178 PVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRV 228
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 45 ACEHIHSNEIILT-LGYSKIVELFLKNAA-QHRKFQCIVMENSPENKGHELAVSLAKSKI 102
+ I ++I+T +SK +K A Q + + IV E P+ +G A LA I
Sbjct: 125 GAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGI 184
Query: 103 QTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSI 153
+ + DSA + +K+++G ++ NG + + GT +AL A+ + +
Sbjct: 185 PVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRV 235
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 73 QHRKFQCIVMENSPENKGHELA-VSLAKSKIQTVLIPDSAMFGLISR---VNKIIIGTHT 128
Q ++ + I E P N+G L L + I LI DS M G++ + V+K+I+G
Sbjct: 177 QGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDS-MVGIVMQKGMVDKVIVGADR 235
Query: 129 VMANGGLRSVCGTHAVALAAQHYSIPY 155
++ + + GT+ V++ A+H++IP+
Sbjct: 236 IVRDAVFNKI-GTYTVSVVAKHHNIPF 261
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 55 ILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHEL-AVSLAKSKIQTVLIPDSAMF 113
+ T+ Y + + ++ + E P +G L A L K I+ +I D+
Sbjct: 161 LATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELXKDGIEVYVITDNXAG 220
Query: 114 GLISR--VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPY 155
L R ++ +++G + NG + GT+++A+ A+ +IP+
Sbjct: 221 WLXKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPF 264
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 63 IVELFLKNAAQHRKFQCIVMENSPENKGHELAV-SLAKSKIQTVLIPDSAMFGLI--SRV 119
+V + R + C E P N+G L V + I LI D A L ++
Sbjct: 201 VVRQLFYDGKLERVYAC---ETRPWNQGARLTVYECVQEDIPCTLICDGAASSLXLNRKI 257
Query: 120 NKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSI 153
+ +++G + NG + GT+ +A++A+ + +
Sbjct: 258 DAVVVGADRICQNGDTANKIGTYNLAVSAKFHGV 291
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 83 ENSPENKGHEL-AVSLAKSKIQTVLIPDSAMFGLIS--RVNKIIIGTHTVMANGGLRSVC 139
E P +G L A L + I LI DS + +++ +I+G + NG +
Sbjct: 214 ETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKI 273
Query: 140 GTHAVALAAQHYSIPY 155
GT+ +A+ A + IP+
Sbjct: 274 GTYGLAILANAFDIPF 289
>pdb|1S7F|A Chain A, Riml- Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase
Crystal Form I (Apo)
Length = 199
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 12 DDNYQESLHKLVVSSD---DEATDFANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFL 68
D+++ +LH+LV+ + ++ D+ P T+ + +H+ N ++ GY+K+ +F
Sbjct: 37 DESHVPALHQLVLKNKAWLQQSLDW--PQYVTSQEETRKHVQGNILLHQRGYAKMYLIFC 94
Query: 69 KN 70
+N
Sbjct: 95 QN 96
>pdb|1S7K|A Chain A, Riml- Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase
Crystal Form 2 (Apo)
pdb|1S7L|A Chain A, Riml- Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase
In Complex With Coenzyme A (Coa-Cys134 Disulfide)
pdb|1S7N|A Chain A, Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase In
Complex With Coenzyme A (Coa Free Sulfhydryl)
pdb|1S7N|B Chain B, Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase In
Complex With Coenzyme A (Coa Free Sulfhydryl)
pdb|1S7N|C Chain C, Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase In
Complex With Coenzyme A (Coa Free Sulfhydryl)
pdb|1S7N|D Chain D, Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase In
Complex With Coenzyme A (Coa Free Sulfhydryl)
Length = 182
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 12 DDNYQESLHKLVVSSD---DEATDFANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFL 68
D+++ +LH+LV+ + ++ D+ P T+ + +H+ N ++ GY+K+ +F
Sbjct: 20 DESHVPALHQLVLKNKAWLQQSLDW--PQYVTSQEETRKHVQGNILLHQRGYAKMYLIFC 77
Query: 69 KN 70
+N
Sbjct: 78 QN 79
>pdb|1Z9U|A Chain A, Structural Genomics, The Crystal Structure Of The Acetyl
Transferase, Modifies N-Terminal Serine Of 50s
Ribosomal Subunit Protein L7L12 From Salmonella
Typhimurium
pdb|1Z9U|B Chain B, Structural Genomics, The Crystal Structure Of The Acetyl
Transferase, Modifies N-Terminal Serine Of 50s
Ribosomal Subunit Protein L7L12 From Salmonella
Typhimurium
Length = 179
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 12 DDNYQESLHKLVVSSD---DEATDFANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFL 68
D+++ +LH+LV+ + ++ D+ P T+ + +H+ N ++ GY+K+ +F
Sbjct: 17 DESHVPALHQLVLKNKAWLQQSLDW--PQYVTSQEETRKHVQGNILLHQRGYAKMYLIFC 74
Query: 69 KN 70
+N
Sbjct: 75 QN 76
>pdb|2AVT|A Chain A, Crystal Structure Of The Beta Subunit From Dna Polymerase
Of Streptococcus Pyogenes
pdb|2AVT|B Chain B, Crystal Structure Of The Beta Subunit From Dna Polymerase
Of Streptococcus Pyogenes
Length = 378
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 46 CEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTV 105
+ I ++++LT G S+I L K+ Q+ + Q + EN + K+K+
Sbjct: 96 VKEIEQHQVVLTSGKSEIT-LKGKDVDQYPRLQEVSTENP----------LILKTKLLKS 144
Query: 106 LIPDSAMFGLISRVNKIIIGTHTVMAN 132
+I ++A + I+ G H V++N
Sbjct: 145 IIAETAFAASLQESRPILTGVHIVLSN 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,527,757
Number of Sequences: 62578
Number of extensions: 151086
Number of successful extensions: 339
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 20
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)