Query psy2575
Match_columns 165
No_of_seqs 111 out of 1091
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 19:41:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08335 translation initiatio 100.0 4.3E-41 9.4E-46 283.2 14.4 129 34-162 92-221 (275)
2 TIGR00511 ribulose_e2b2 ribose 100.0 4.1E-41 8.8E-46 286.5 14.4 129 34-162 98-227 (301)
3 PRK08535 translation initiatio 100.0 5.3E-41 1.2E-45 286.7 14.4 129 34-162 103-232 (310)
4 PF01008 IF-2B: Initiation fac 100.0 8E-41 1.7E-45 279.7 12.2 128 34-161 90-219 (282)
5 COG1184 GCD2 Translation initi 100.0 4.7E-40 1E-44 278.9 14.2 128 34-161 102-230 (301)
6 TIGR00524 eIF-2B_rel eIF-2B al 100.0 2.5E-39 5.3E-44 275.9 13.8 128 35-162 102-241 (303)
7 KOG1465|consensus 100.0 7E-38 1.5E-42 264.2 15.4 151 11-161 98-273 (353)
8 KOG1466|consensus 100.0 4.4E-38 9.5E-43 261.2 12.6 127 35-161 114-241 (313)
9 PRK05720 mtnA methylthioribose 100.0 1.2E-37 2.6E-42 269.4 14.0 129 34-162 129-269 (344)
10 TIGR00512 salvage_mtnA S-methy 100.0 1.2E-37 2.6E-42 268.1 13.6 146 17-162 108-269 (331)
11 PRK06036 translation initiatio 100.0 2.2E-37 4.8E-42 267.2 12.7 145 17-162 113-269 (339)
12 PRK06371 translation initiatio 100.0 1.1E-36 2.5E-41 261.7 15.9 128 35-162 120-259 (329)
13 PRK06372 translation initiatio 100.0 1.4E-36 2.9E-41 253.2 15.2 123 36-161 72-194 (253)
14 PRK05772 translation initiatio 100.0 7.6E-37 1.6E-41 265.6 14.2 129 34-162 149-290 (363)
15 PRK08334 translation initiatio 100.0 3.6E-36 7.7E-41 260.6 13.6 127 35-162 144-282 (356)
16 KOG1467|consensus 100.0 1.6E-34 3.5E-39 255.4 12.2 127 35-161 343-470 (556)
17 COG0182 Predicted translation 100.0 2.2E-31 4.8E-36 226.6 12.5 126 36-162 134-272 (346)
18 KOG1468|consensus 99.9 6.8E-25 1.5E-29 184.1 10.0 124 38-162 135-277 (354)
19 PRK00702 ribose-5-phosphate is 97.9 0.00016 3.4E-09 59.6 11.5 112 35-159 4-119 (220)
20 TIGR00021 rpiA ribose 5-phosph 97.9 0.00031 6.7E-09 57.8 12.3 91 38-140 2-95 (218)
21 cd01398 RPI_A RPI_A: Ribose 5- 97.9 0.00024 5.2E-09 58.0 11.1 94 38-145 2-100 (213)
22 PF00455 DeoRC: DeoR C termina 97.9 0.00032 7E-09 54.7 11.4 118 36-161 4-136 (161)
23 PRK10434 srlR DNA-bindng trans 97.8 0.00045 9.7E-09 57.7 11.3 119 36-162 76-209 (256)
24 PRK09802 DNA-binding transcrip 97.6 0.0012 2.5E-08 55.7 11.3 118 36-161 91-223 (269)
25 PRK10906 DNA-binding transcrip 97.5 0.0015 3.2E-08 54.5 11.5 118 37-162 77-209 (252)
26 PRK10681 DNA-binding transcrip 97.3 0.0031 6.8E-08 52.4 10.9 117 37-161 78-209 (252)
27 PRK13509 transcriptional repre 97.3 0.0037 8E-08 52.0 10.5 116 37-162 79-208 (251)
28 PRK10411 DNA-binding transcrip 97.1 0.0092 2E-07 49.4 10.9 117 36-161 78-209 (240)
29 COG1349 GlpR Transcriptional r 96.8 0.033 7.2E-07 46.4 12.1 115 37-159 77-206 (253)
30 PLN02384 ribose-5-phosphate is 96.5 0.063 1.4E-06 45.6 11.7 96 35-142 33-132 (264)
31 PRK13978 ribose-5-phosphate is 96.4 0.073 1.6E-06 44.3 11.5 95 36-142 6-103 (228)
32 KOG0259|consensus 95.0 0.36 7.8E-06 43.3 10.9 115 35-157 106-237 (447)
33 COG0120 RpiA Ribose 5-phosphat 95.0 0.19 4.1E-06 41.8 8.7 96 36-143 5-102 (227)
34 PF02254 TrkA_N: TrkA-N domain 94.5 0.39 8.5E-06 34.2 8.3 90 55-159 1-96 (116)
35 PF10087 DUF2325: Uncharacteri 91.1 1.8 3.9E-05 30.5 7.6 60 93-159 15-82 (97)
36 PRK01438 murD UDP-N-acetylmura 90.6 2.9 6.3E-05 37.3 10.2 72 51-126 15-86 (480)
37 PRK14106 murD UDP-N-acetylmura 90.2 3.5 7.6E-05 36.4 10.2 93 51-156 4-96 (450)
38 PRK09496 trkA potassium transp 89.1 8.1 0.00017 33.9 11.6 61 46-108 199-261 (453)
39 PRK09136 5'-methylthioadenosin 87.7 4.4 9.5E-05 33.8 8.6 73 56-160 127-204 (245)
40 PRK01710 murD UDP-N-acetylmura 87.6 7.1 0.00015 34.9 10.4 92 52-156 14-105 (458)
41 PF01073 3Beta_HSD: 3-beta hyd 87.2 2.1 4.6E-05 35.9 6.5 100 59-161 4-116 (280)
42 cd00287 ribokinase_pfkB_like r 86.9 3.2 6.9E-05 31.6 6.9 60 81-157 30-89 (196)
43 PRK05839 hypothetical protein; 86.8 13 0.00029 31.9 11.4 118 35-157 63-193 (374)
44 PF05368 NmrA: NmrA-like famil 86.3 6.9 0.00015 31.0 8.8 99 55-161 1-103 (233)
45 COG4635 HemG Flavodoxin [Energ 86.2 1.3 2.8E-05 35.3 4.3 65 92-158 20-85 (175)
46 TIGR03235 DNA_S_dndA cysteine 85.5 21 0.00045 30.1 11.7 115 40-158 46-174 (353)
47 PF00535 Glycos_transf_2: Glyc 85.1 5 0.00011 28.6 6.8 55 54-108 3-59 (169)
48 TIGR01470 cysG_Nterm siroheme 84.9 12 0.00026 30.1 9.6 93 51-159 8-101 (205)
49 TIGR01140 L_thr_O3P_dcar L-thr 84.6 16 0.00034 30.9 10.6 113 35-157 50-163 (330)
50 cd01424 MGS_CPS_II Methylglyox 84.6 12 0.00026 26.6 9.3 90 53-157 2-100 (110)
51 PRK00025 lpxB lipid-A-disaccha 84.3 24 0.00052 29.8 11.7 89 53-158 187-286 (380)
52 cd01494 AAT_I Aspartate aminot 84.3 13 0.00029 26.8 11.1 108 43-158 7-128 (170)
53 PRK07582 cystathionine gamma-l 84.1 17 0.00037 31.5 10.8 109 40-157 55-167 (366)
54 TIGR03539 DapC_actino succinyl 84.0 17 0.00037 30.9 10.6 116 35-157 59-180 (357)
55 PLN02651 cysteine desulfurase 83.5 24 0.00052 30.0 11.3 117 38-159 45-175 (364)
56 CHL00144 odpB pyruvate dehydro 83.3 6.8 0.00015 33.9 7.9 68 89-161 215-294 (327)
57 PTZ00433 tyrosine aminotransfe 82.9 22 0.00048 31.0 11.1 118 34-157 77-215 (412)
58 COG2057 AtoA Acyl CoA:acetate/ 82.6 3.6 7.8E-05 34.3 5.6 103 36-139 6-120 (225)
59 cd06451 AGAT_like Alanine-glyo 82.4 28 0.00061 29.2 12.6 114 38-158 34-160 (356)
60 TIGR01979 sufS cysteine desulf 82.2 30 0.00064 29.7 11.5 114 43-159 69-196 (403)
61 cd06453 SufS_like Cysteine des 82.2 30 0.00064 29.3 11.4 100 53-158 63-175 (373)
62 PRK10874 cysteine sulfinate de 82.1 27 0.00059 30.1 11.2 110 43-157 70-195 (401)
63 PRK13520 L-tyrosine decarboxyl 82.0 30 0.00064 29.1 11.3 112 39-157 62-186 (371)
64 cd01989 STK_N The N-terminal d 81.9 17 0.00037 26.4 10.2 39 118-159 103-144 (146)
65 PRK07810 O-succinylhomoserine 81.9 36 0.00078 30.0 12.4 115 38-157 72-190 (403)
66 cd00613 GDC-P Glycine cleavage 81.8 29 0.00064 29.6 11.3 116 36-158 64-195 (398)
67 PRK08133 O-succinylhomoserine 81.6 36 0.00077 29.8 11.9 113 38-157 63-181 (390)
68 PRK00421 murC UDP-N-acetylmura 81.4 15 0.00031 32.8 9.5 90 50-156 5-94 (461)
69 PLN02206 UDP-glucuronate decar 81.3 11 0.00024 33.8 8.7 108 51-160 118-233 (442)
70 PRK03803 murD UDP-N-acetylmura 81.1 15 0.00032 32.6 9.4 92 49-156 3-96 (448)
71 PRK05764 aspartate aminotransf 81.0 24 0.00052 30.2 10.4 117 35-157 71-202 (393)
72 PRK07765 para-aminobenzoate sy 80.9 13 0.00027 30.2 8.2 76 78-159 2-83 (214)
73 COG0373 HemA Glutamyl-tRNA red 80.7 7.9 0.00017 35.0 7.5 80 43-128 167-248 (414)
74 TIGR02006 IscS cysteine desulf 80.7 37 0.00081 29.4 12.0 110 45-159 56-179 (402)
75 PRK08134 O-acetylhomoserine am 80.6 32 0.0007 30.8 11.5 117 38-158 66-185 (433)
76 PRK07568 aspartate aminotransf 80.5 29 0.00064 29.7 10.9 118 34-157 68-200 (397)
77 TIGR02371 ala_DH_arch alanine 80.3 15 0.00033 31.5 9.0 99 41-142 115-224 (325)
78 PRK05613 O-acetylhomoserine am 80.0 24 0.00051 31.8 10.4 115 39-157 72-190 (437)
79 PLN02683 pyruvate dehydrogenas 80.0 11 0.00024 33.1 8.1 66 91-161 244-321 (356)
80 TIGR01329 cysta_beta_ly_E cyst 80.0 31 0.00067 30.1 10.9 114 37-157 48-166 (378)
81 PRK13527 glutamine amidotransf 79.4 5.5 0.00012 31.6 5.6 78 77-159 3-84 (200)
82 TIGR03127 RuMP_HxlB 6-phospho 79.3 20 0.00043 27.6 8.6 39 89-127 87-125 (179)
83 TIGR03402 FeS_nifS cysteine de 79.1 39 0.00085 28.8 11.4 114 40-158 46-172 (379)
84 cd00609 AAT_like Aspartate ami 79.0 26 0.00057 28.6 9.7 118 35-158 39-171 (350)
85 PRK07324 transaminase; Validat 78.4 34 0.00073 29.5 10.6 116 35-157 65-191 (373)
86 COG1929 Glycerate kinase [Carb 78.2 3.1 6.7E-05 37.0 4.1 45 115-161 281-325 (378)
87 KOG3349|consensus 77.7 3.8 8.2E-05 32.5 4.0 53 47-102 76-128 (170)
88 TIGR03392 FeS_syn_CsdA cystein 77.7 45 0.00097 28.6 11.7 100 52-157 79-192 (398)
89 PLN02656 tyrosine transaminase 77.6 48 0.001 28.9 11.8 119 34-157 75-207 (409)
90 PRK09295 bifunctional cysteine 77.5 43 0.00094 28.9 11.1 111 43-157 74-199 (406)
91 PRK07865 N-succinyldiaminopime 77.4 42 0.00092 28.5 10.8 117 34-157 64-186 (364)
92 PF01488 Shikimate_DH: Shikima 77.3 11 0.00024 28.0 6.4 73 51-126 11-83 (135)
93 PF04016 DUF364: Domain of unk 77.3 10 0.00022 29.0 6.3 92 48-162 7-98 (147)
94 KOG3075|consensus 77.2 14 0.00029 31.5 7.4 96 35-141 25-124 (261)
95 PLN02409 serine--glyoxylate am 77.2 49 0.0011 28.8 12.9 121 36-163 42-180 (401)
96 cd01987 USP_OKCHK USP domain i 77.2 23 0.00049 24.9 10.1 99 56-158 4-123 (124)
97 PRK03369 murD UDP-N-acetylmura 76.9 28 0.00061 31.5 10.0 90 49-156 9-98 (488)
98 PF00670 AdoHcyase_NAD: S-aden 76.8 25 0.00054 27.8 8.4 93 38-142 10-112 (162)
99 PRK06836 aspartate aminotransf 76.3 50 0.0011 28.5 11.1 117 35-157 76-212 (394)
100 PLN02778 3,5-epimerase/4-reduc 76.1 17 0.00037 30.4 7.9 83 76-159 9-109 (298)
101 PRK08666 5'-methylthioadenosin 76.1 20 0.00044 29.8 8.3 21 139-159 183-203 (261)
102 PRK09932 glycerate kinase II; 75.4 4.9 0.00011 35.9 4.6 45 115-161 281-325 (381)
103 TIGR03215 ac_ald_DH_ac acetald 75.4 45 0.00097 28.5 10.3 96 54-163 3-99 (285)
104 PRK13143 hisH imidazole glycer 75.0 25 0.00054 27.9 8.3 77 78-160 2-79 (200)
105 TIGR01699 XAPA xanthosine phos 74.7 17 0.00037 30.4 7.5 73 56-160 134-210 (248)
106 PRK06108 aspartate aminotransf 74.6 52 0.0011 27.9 13.4 117 35-157 64-196 (382)
107 PRK05968 hypothetical protein; 74.1 60 0.0013 28.4 12.2 113 38-157 65-182 (389)
108 PRK11892 pyruvate dehydrogenas 74.0 18 0.00038 33.1 7.9 68 89-161 354-433 (464)
109 PLN02187 rooty/superroot1 73.8 63 0.0014 29.0 11.4 117 35-157 111-242 (462)
110 PLN02260 probable rhamnose bio 73.7 22 0.00048 33.2 8.7 84 75-159 379-480 (668)
111 PRK08248 O-acetylhomoserine am 73.6 54 0.0012 29.3 10.8 113 38-157 66-184 (431)
112 TIGR01326 OAH_OAS_sulfhy OAH/O 73.6 64 0.0014 28.5 11.6 112 38-157 59-177 (418)
113 cd05006 SIS_GmhA Phosphoheptos 73.5 9.8 0.00021 29.3 5.4 47 80-126 107-153 (177)
114 TIGR00045 glycerate kinase. Th 73.3 5.8 0.00012 35.4 4.5 44 116-161 281-324 (375)
115 PRK08202 purine nucleoside pho 73.1 27 0.0006 29.3 8.4 20 141-160 213-232 (272)
116 cd00614 CGS_like CGS_like: Cys 73.1 60 0.0013 27.9 11.7 113 38-157 42-160 (369)
117 cd05005 SIS_PHI Hexulose-6-pho 72.9 32 0.0007 26.5 8.3 37 90-126 91-127 (179)
118 PRK07812 O-acetylhomoserine am 72.8 61 0.0013 29.1 11.0 114 38-158 71-191 (436)
119 PRK07550 hypothetical protein; 72.7 60 0.0013 27.8 10.9 117 34-157 69-201 (386)
120 PRK06225 aspartate aminotransf 72.7 60 0.0013 27.7 10.6 117 34-157 68-195 (380)
121 TIGR01325 O_suc_HS_sulf O-succ 72.6 64 0.0014 28.0 11.9 113 38-157 56-174 (380)
122 PRK05443 polyphosphate kinase; 72.5 15 0.00032 35.3 7.3 50 59-108 377-429 (691)
123 PF05159 Capsule_synth: Capsul 72.5 31 0.00068 28.3 8.5 84 62-161 140-227 (269)
124 TIGR01437 selA_rel uncharacter 72.4 47 0.001 28.6 10.0 118 35-157 44-184 (363)
125 PRK11337 DNA-binding transcrip 72.2 24 0.00051 29.4 7.8 63 92-161 157-223 (292)
126 PRK08574 cystathionine gamma-s 71.8 62 0.0013 28.3 10.6 112 39-157 56-172 (385)
127 cd01979 Pchlide_reductase_N Pc 71.8 17 0.00036 32.1 7.1 78 77-164 156-234 (396)
128 PLN02166 dTDP-glucose 4,6-dehy 71.3 39 0.00084 30.2 9.4 23 136-158 210-232 (436)
129 PTZ00182 3-methyl-2-oxobutanat 71.2 35 0.00077 29.9 8.9 66 90-160 248-325 (355)
130 PRK07340 ornithine cyclodeamin 71.0 35 0.00076 29.0 8.7 98 41-142 112-219 (304)
131 PRK02842 light-independent pro 70.8 15 0.00031 32.8 6.6 75 78-165 168-245 (427)
132 COG0771 MurD UDP-N-acetylmuram 70.7 26 0.00056 32.0 8.2 88 52-156 7-97 (448)
133 PLN02214 cinnamoyl-CoA reducta 70.6 65 0.0014 27.3 10.5 109 51-159 9-125 (342)
134 TIGR00441 gmhA phosphoheptose 70.1 17 0.00036 27.7 6.0 32 93-124 98-129 (154)
135 PRK07683 aminotransferase A; V 70.1 71 0.0015 27.5 11.2 119 34-157 67-199 (387)
136 PLN03209 translocon at the inn 69.8 31 0.00067 32.5 8.7 109 49-159 77-206 (576)
137 PRK04690 murD UDP-N-acetylmura 69.7 60 0.0013 29.2 10.3 87 52-156 8-97 (468)
138 PF04198 Sugar-bind: Putative 69.5 14 0.00029 30.8 5.7 96 35-131 32-157 (255)
139 COG1737 RpiR Transcriptional r 69.4 13 0.00027 31.3 5.6 92 37-128 115-231 (281)
140 PRK11557 putative DNA-binding 69.4 62 0.0014 26.6 10.0 63 92-161 145-211 (278)
141 TIGR01279 DPOR_bchN light-inde 69.2 19 0.0004 32.0 6.9 66 90-165 167-233 (407)
142 PF13580 SIS_2: SIS domain; PD 69.1 14 0.0003 27.6 5.2 40 41-81 91-135 (138)
143 cd01748 GATase1_IGP_Synthase T 69.0 22 0.00048 27.9 6.7 67 91-160 12-79 (198)
144 PRK05678 succinyl-CoA syntheta 69.0 60 0.0013 27.8 9.7 103 52-156 66-173 (291)
145 TIGR01737 FGAM_synth_I phospho 68.8 32 0.00069 28.0 7.7 34 91-126 15-48 (227)
146 PLN02828 formyltetrahydrofolat 68.7 39 0.00084 28.7 8.4 73 54-126 74-155 (268)
147 TIGR01019 sucCoAalpha succinyl 68.1 54 0.0012 28.0 9.2 102 53-156 65-171 (286)
148 PRK15482 transcriptional regul 68.0 12 0.00026 31.1 5.2 51 76-126 184-234 (285)
149 PRK02705 murD UDP-N-acetylmura 67.9 76 0.0016 28.0 10.5 72 75-156 22-96 (459)
150 TIGR00853 pts-lac PTS system, 67.9 16 0.00035 25.9 5.1 60 94-162 24-85 (95)
151 COG5016 Pyruvate/oxaloacetate 67.8 24 0.00052 32.2 7.1 149 12-164 49-211 (472)
152 PRK10342 glycerate kinase I; P 67.7 8.9 0.00019 34.3 4.5 45 115-161 281-325 (381)
153 PTZ00187 succinyl-CoA syntheta 67.7 38 0.00082 29.6 8.2 101 52-156 89-197 (317)
154 PLN02855 Bifunctional selenocy 67.6 84 0.0018 27.4 11.1 101 52-158 95-209 (424)
155 PRK14101 bifunctional glucokin 67.4 34 0.00074 32.1 8.5 61 93-160 486-550 (638)
156 COG0424 Maf Nucleotide-binding 67.2 30 0.00066 28.1 7.1 79 57-145 7-90 (193)
157 PRK05957 aspartate aminotransf 67.1 82 0.0018 27.1 11.2 117 35-157 68-198 (389)
158 PRK08249 cystathionine gamma-s 67.1 84 0.0018 27.7 10.5 113 38-157 66-184 (398)
159 PRK09028 cystathionine beta-ly 67.0 79 0.0017 28.0 10.4 94 53-157 78-181 (394)
160 PLN00145 tyrosine/nicotianamin 66.9 63 0.0014 28.6 9.8 118 34-157 96-228 (430)
161 PRK08300 acetaldehyde dehydrog 66.9 64 0.0014 27.9 9.5 97 53-162 5-104 (302)
162 TIGR01694 MTAP 5'-deoxy-5'-met 66.9 57 0.0012 26.7 8.9 21 139-159 181-201 (241)
163 cd05710 SIS_1 A subgroup of th 66.8 12 0.00027 27.1 4.4 16 47-62 43-58 (120)
164 TIGR03609 S_layer_CsaB polysac 66.8 29 0.00062 28.8 7.2 79 75-160 27-107 (298)
165 cd01423 MGS_CPS_I_III Methylgl 66.4 30 0.00065 24.8 6.4 67 74-156 24-105 (116)
166 cd04252 AAK_NAGK-fArgBP AAK_NA 66.3 54 0.0012 27.0 8.7 107 53-159 30-171 (248)
167 TIGR01328 met_gam_lyase methio 66.3 91 0.002 27.3 11.4 114 38-157 61-179 (391)
168 cd06450 DOPA_deC_like DOPA dec 66.2 75 0.0016 26.3 11.1 117 35-158 37-184 (345)
169 PRK06702 O-acetylhomoserine am 66.0 1E+02 0.0022 27.8 11.0 99 53-157 78-182 (432)
170 PRK07523 gluconate 5-dehydroge 65.8 50 0.0011 26.2 8.2 55 51-107 9-64 (255)
171 PRK00451 glycine dehydrogenase 65.7 84 0.0018 27.6 10.3 98 53-157 131-238 (447)
172 COG3844 Kynureninase [Amino ac 65.7 1E+02 0.0022 27.7 10.6 116 38-158 78-200 (407)
173 cd01080 NAD_bind_m-THF_DH_Cycl 65.7 49 0.0011 25.9 7.9 47 39-85 29-77 (168)
174 PF13241 NAD_binding_7: Putati 65.5 45 0.00098 23.5 7.2 86 51-159 6-92 (103)
175 PRK07503 methionine gamma-lyas 65.4 96 0.0021 27.3 11.5 112 40-158 69-186 (403)
176 COG0451 WcaG Nucleoside-diphos 65.4 36 0.00077 27.6 7.4 101 55-162 3-116 (314)
177 COG0075 Serine-pyruvate aminot 65.1 1E+02 0.0023 27.6 12.4 120 38-164 40-173 (383)
178 cd01988 Na_H_Antiporter_C The 65.1 44 0.00096 23.3 11.0 61 95-158 63-131 (132)
179 COG1104 NifS Cysteine sulfinat 65.0 57 0.0012 29.3 9.0 115 35-159 47-178 (386)
180 PRK15418 transcriptional regul 64.9 44 0.00095 28.8 8.1 92 37-131 97-214 (318)
181 CHL00194 ycf39 Ycf39; Provisio 64.8 82 0.0018 26.2 10.1 100 54-158 2-107 (317)
182 cd06454 KBL_like KBL_like; thi 64.6 81 0.0017 26.1 10.6 115 36-158 46-168 (349)
183 cd01743 GATase1_Anthranilate_S 64.4 36 0.00078 26.3 6.9 63 91-159 12-78 (184)
184 PRK05557 fabG 3-ketoacyl-(acyl 64.3 65 0.0014 24.9 8.8 56 51-107 4-60 (248)
185 PF00266 Aminotran_5: Aminotra 64.0 84 0.0018 26.7 9.7 122 38-164 45-181 (371)
186 PRK06084 O-acetylhomoserine am 63.8 85 0.0018 28.0 10.0 112 39-157 61-178 (425)
187 COG0279 GmhA Phosphoheptose is 63.8 40 0.00087 27.1 7.0 50 38-88 95-148 (176)
188 PRK08045 cystathionine gamma-s 63.8 1E+02 0.0022 27.0 10.6 113 38-157 54-172 (386)
189 PRK08063 enoyl-(acyl carrier p 63.7 49 0.0011 26.0 7.7 98 52-150 4-126 (250)
190 cd05212 NAD_bind_m-THF_DH_Cycl 63.6 57 0.0012 24.8 7.7 55 89-143 40-103 (140)
191 PRK15181 Vi polysaccharide bio 63.5 66 0.0014 27.2 9.0 109 49-157 12-137 (348)
192 PRK02472 murD UDP-N-acetylmura 63.4 1E+02 0.0022 27.0 10.4 92 51-156 4-96 (447)
193 COG1658 Small primase-like pro 63.4 21 0.00046 27.1 5.2 54 46-100 24-78 (127)
194 PRK07050 cystathionine beta-ly 63.3 1E+02 0.0023 27.0 12.2 115 37-157 66-185 (394)
195 PRK13937 phosphoheptose isomer 63.3 23 0.00051 27.8 5.7 49 77-125 109-157 (188)
196 PRK00207 sulfur transfer compl 63.3 30 0.00064 25.9 6.0 70 80-161 5-81 (128)
197 PRK09212 pyruvate dehydrogenas 63.2 63 0.0014 27.9 8.8 65 91-160 217-293 (327)
198 TIGR01700 PNPH purine nucleosi 63.1 60 0.0013 26.9 8.4 20 141-160 191-210 (249)
199 PRK14573 bifunctional D-alanyl 62.9 54 0.0012 31.6 9.1 85 55-156 7-91 (809)
200 PRK15118 universal stress glob 62.8 56 0.0012 23.6 10.2 36 118-159 103-138 (144)
201 PRK08960 hypothetical protein; 62.6 1E+02 0.0022 26.5 10.3 118 34-157 71-203 (387)
202 PRK13938 phosphoheptose isomer 62.5 29 0.00062 27.9 6.2 38 43-81 105-145 (196)
203 TIGR03458 YgfH_subfam succinat 62.2 1.3E+02 0.0028 27.7 11.2 116 42-158 5-155 (485)
204 PRK13566 anthranilate synthase 62.1 46 0.00099 32.2 8.4 79 75-159 525-605 (720)
205 PRK15029 arginine decarboxylas 62.0 51 0.0011 32.1 8.7 82 78-162 2-95 (755)
206 cd01741 GATase1_1 Subgroup of 61.8 33 0.00071 26.5 6.3 82 79-160 2-89 (188)
207 PRK03659 glutathione-regulated 61.5 47 0.001 31.0 8.2 92 52-159 400-498 (601)
208 PRK00048 dihydrodipicolinate r 61.5 81 0.0018 26.0 8.9 86 54-158 3-90 (257)
209 PF02595 Gly_kinase: Glycerate 61.3 6.4 0.00014 35.1 2.3 45 115-161 281-325 (377)
210 PRK06895 putative anthranilate 61.3 66 0.0014 25.1 8.0 75 77-159 2-79 (190)
211 TIGR03538 DapC_gpp succinyldia 61.3 1.1E+02 0.0023 26.4 11.1 119 34-157 66-203 (393)
212 PRK09135 pteridine reductase; 61.3 27 0.00059 27.2 5.8 100 51-150 5-129 (249)
213 cd00532 MGS-like MGS-like doma 61.1 58 0.0013 23.3 10.4 71 74-157 23-104 (112)
214 TIGR01087 murD UDP-N-acetylmur 61.1 85 0.0018 27.5 9.4 70 74-156 20-90 (433)
215 PRK14175 bifunctional 5,10-met 61.0 30 0.00064 29.7 6.3 36 51-86 157-192 (286)
216 TIGR01963 PHB_DH 3-hydroxybuty 60.9 74 0.0016 24.9 8.3 52 53-105 2-53 (255)
217 PRK13479 2-aminoethylphosphona 60.8 1E+02 0.0022 26.0 12.1 116 38-159 39-168 (368)
218 PRK05967 cystathionine beta-ly 60.8 1.2E+02 0.0027 26.9 10.9 98 53-157 81-184 (395)
219 TIGR01264 tyr_amTase_E tyrosin 60.6 1.1E+02 0.0024 26.3 10.6 117 35-157 76-206 (401)
220 TIGR01214 rmlD dTDP-4-dehydror 60.6 44 0.00096 26.9 7.1 25 136-160 76-100 (287)
221 PRK11337 DNA-binding transcrip 60.6 25 0.00054 29.2 5.7 84 40-126 153-239 (292)
222 cd04251 AAK_NAGK-UC AAK_NAGK-U 60.5 80 0.0017 26.1 8.7 108 51-158 24-184 (257)
223 TIGR03812 tyr_de_CO2_Arch tyro 60.3 1E+02 0.0022 25.9 10.8 112 39-157 62-188 (373)
224 PRK05994 O-acetylhomoserine am 60.2 1.3E+02 0.0027 26.8 11.4 105 46-157 73-183 (427)
225 PF02142 MGS: MGS-like domain 60.0 15 0.00033 25.6 3.7 69 75-156 12-94 (95)
226 PRK12320 hypothetical protein; 59.7 63 0.0014 31.2 8.8 98 54-159 2-101 (699)
227 cd00640 Trp-synth-beta_II Tryp 59.6 90 0.002 25.0 9.2 55 52-110 50-105 (244)
228 PRK02948 cysteine desulfurase; 59.6 1.1E+02 0.0024 26.0 11.0 111 43-158 50-174 (381)
229 PRK08912 hypothetical protein; 59.6 1.1E+02 0.0024 26.1 11.8 117 35-157 66-197 (387)
230 PLN02695 GDP-D-mannose-3',5'-e 59.4 79 0.0017 27.3 8.8 107 47-159 16-135 (370)
231 PF01380 SIS: SIS domain SIS d 59.4 22 0.00047 25.2 4.6 39 89-127 68-106 (131)
232 COG2390 DeoR Transcriptional r 59.2 74 0.0016 27.7 8.5 98 36-134 95-223 (321)
233 cd05565 PTS_IIB_lactose PTS_II 59.2 17 0.00037 26.2 3.9 59 94-161 21-81 (99)
234 COG0855 Ppk Polyphosphate kina 59.2 23 0.0005 34.0 5.6 50 59-108 382-433 (696)
235 PF03709 OKR_DC_1_N: Orn/Lys/A 59.1 21 0.00045 26.0 4.4 66 91-161 7-76 (115)
236 PRK08861 cystathionine gamma-s 59.1 1.3E+02 0.0028 26.6 10.2 113 38-157 55-173 (388)
237 COG0426 FpaA Uncharacterized f 59.0 99 0.0021 27.8 9.4 102 55-159 225-337 (388)
238 PRK08361 aspartate aminotransf 58.9 1.2E+02 0.0025 26.1 12.8 118 34-157 72-204 (391)
239 PRK08056 threonine-phosphate d 58.9 1.1E+02 0.0024 25.9 11.2 114 34-157 57-180 (356)
240 PRK02006 murD UDP-N-acetylmura 58.8 88 0.0019 28.2 9.3 71 52-126 7-77 (498)
241 PF13090 PP_kinase_C: Polyphos 58.5 8.2 0.00018 34.2 2.5 49 59-108 48-99 (352)
242 PRK00942 acetylglutamate kinas 58.4 1.1E+02 0.0023 25.5 11.0 111 48-158 51-201 (283)
243 PF02844 GARS_N: Phosphoribosy 58.3 12 0.00026 27.2 3.0 85 54-156 2-90 (100)
244 PRK11104 hemG protoporphyrinog 58.3 29 0.00064 27.1 5.5 65 92-159 20-85 (177)
245 PRK07681 aspartate aminotransf 58.3 1.2E+02 0.0026 26.1 11.7 118 34-157 71-204 (399)
246 PRK07589 ornithine cyclodeamin 58.2 1E+02 0.0022 27.0 9.3 100 41-143 116-228 (346)
247 COG1648 CysG Siroheme synthase 58.2 63 0.0014 26.3 7.5 92 51-158 11-103 (210)
248 cd04187 DPM1_like_bac Bacteria 58.1 63 0.0014 24.0 7.2 11 52-62 30-40 (181)
249 TIGR01777 yfcH conserved hypot 58.1 51 0.0011 26.4 7.0 47 113-159 52-109 (292)
250 PRK05973 replicative DNA helic 58.0 65 0.0014 26.8 7.7 113 48-164 60-195 (237)
251 PLN02331 phosphoribosylglycina 58.0 1E+02 0.0022 25.0 8.8 70 54-126 3-86 (207)
252 cd06436 GlcNAc-1-P_transferase 58.0 46 0.00099 25.5 6.5 10 52-61 26-35 (191)
253 cd06433 GT_2_WfgS_like WfgS an 57.9 73 0.0016 23.4 8.5 6 77-82 28-33 (202)
254 PRK10892 D-arabinose 5-phospha 57.9 89 0.0019 26.3 8.8 62 93-161 65-130 (326)
255 TIGR00732 dprA DNA protecting 57.6 74 0.0016 26.0 7.9 107 43-158 65-187 (220)
256 TIGR03492 conserved hypothetic 57.3 1.4E+02 0.0029 26.3 11.7 92 52-159 205-322 (396)
257 TIGR01426 MGT glycosyltransfer 57.2 41 0.00089 28.8 6.6 31 125-161 92-122 (392)
258 COG1587 HemD Uroporphyrinogen- 57.2 21 0.00045 29.2 4.6 57 50-113 173-234 (248)
259 TIGR00474 selA seryl-tRNA(sec) 57.2 1.3E+02 0.0029 27.2 10.2 113 43-158 129-251 (454)
260 PF04392 ABC_sub_bind: ABC tra 57.0 15 0.00032 30.7 3.7 92 63-161 116-220 (294)
261 PRK13181 hisH imidazole glycer 56.9 20 0.00044 28.2 4.4 67 91-160 13-80 (199)
262 PRK08618 ornithine cyclodeamin 56.8 1.2E+02 0.0026 25.9 9.4 97 43-142 116-223 (325)
263 TIGR03705 poly_P_kin polyphosp 56.7 38 0.00081 32.6 6.7 48 60-108 370-420 (672)
264 cd01744 GATase1_CPSase Small c 56.6 53 0.0012 25.4 6.7 66 90-159 9-76 (178)
265 PRK06207 aspartate aminotransf 56.6 1.3E+02 0.0029 26.1 12.0 118 34-157 80-216 (405)
266 cd05564 PTS_IIB_chitobiose_lic 56.6 34 0.00074 24.1 5.1 61 93-162 19-81 (96)
267 cd01483 E1_enzyme_family Super 56.5 77 0.0017 23.2 9.4 60 92-160 57-122 (143)
268 PRK14361 Maf-like protein; Pro 56.5 98 0.0021 24.7 8.3 88 59-158 5-99 (187)
269 PRK04663 murD UDP-N-acetylmura 56.5 1.4E+02 0.0031 26.3 10.4 88 53-156 8-96 (438)
270 TIGR01697 PNPH-PUNA-XAPA inosi 56.3 83 0.0018 25.9 8.1 22 138-159 188-209 (248)
271 TIGR01142 purT phosphoribosylg 56.3 46 0.00099 28.5 6.8 71 54-129 1-73 (380)
272 PRK14571 D-alanyl-alanine synt 56.2 37 0.0008 28.3 6.1 62 88-157 19-84 (299)
273 TIGR01082 murC UDP-N-acetylmur 55.9 89 0.0019 27.7 8.7 65 75-156 22-86 (448)
274 PRK08247 cystathionine gamma-s 55.9 1.3E+02 0.0029 25.8 11.8 113 37-157 53-171 (366)
275 TIGR02080 O_succ_thio_ly O-suc 55.9 1.4E+02 0.003 26.1 10.8 113 38-157 53-171 (382)
276 PLN02512 acetylglutamate kinas 55.8 1.3E+02 0.0028 25.7 10.8 106 53-158 81-225 (309)
277 TIGR03590 PseG pseudaminic aci 55.5 1.2E+02 0.0026 25.2 11.1 90 53-160 172-268 (279)
278 COG1154 Dxs Deoxyxylulose-5-ph 55.5 72 0.0016 30.4 8.2 66 89-159 515-589 (627)
279 cd05014 SIS_Kpsf KpsF-like pro 55.5 32 0.0007 24.5 4.9 44 83-126 56-99 (128)
280 COG0074 SucD Succinyl-CoA synt 55.5 1.1E+02 0.0024 26.5 8.8 89 52-143 66-158 (293)
281 TIGR01976 am_tr_V_VC1184 cyste 55.4 1.3E+02 0.0028 25.6 12.5 79 74-157 102-191 (397)
282 PF02780 Transketolase_C: Tran 55.2 17 0.00037 26.3 3.5 24 48-71 5-28 (124)
283 PRK01372 ddl D-alanine--D-alan 55.2 56 0.0012 27.0 7.0 39 89-127 24-65 (304)
284 PRK15005 universal stress prot 55.2 55 0.0012 23.5 6.2 36 118-158 107-143 (144)
285 TIGR01324 cysta_beta_ly_B cyst 55.2 1.4E+02 0.0031 26.0 10.8 107 40-157 54-170 (377)
286 PRK13525 glutamine amidotransf 55.1 33 0.00072 27.0 5.3 70 77-160 4-80 (189)
287 TIGR01081 mpl UDP-N-acetylmura 55.0 46 0.001 29.5 6.8 68 74-156 21-88 (448)
288 PRK04308 murD UDP-N-acetylmura 55.0 1.5E+02 0.0033 26.1 10.0 89 52-156 5-95 (445)
289 TIGR01133 murG undecaprenyldip 54.8 1.2E+02 0.0026 25.0 10.2 90 52-158 179-276 (348)
290 PRK12939 short chain dehydroge 54.8 68 0.0015 25.0 7.1 54 52-106 7-60 (250)
291 PRK09134 short chain dehydroge 54.5 77 0.0017 25.2 7.5 57 51-107 8-64 (258)
292 PRK03562 glutathione-regulated 54.4 72 0.0016 30.0 8.2 92 52-159 400-498 (621)
293 cd04185 GT_2_like_b Subfamily 54.4 39 0.00085 25.6 5.5 32 55-86 3-36 (202)
294 PRK05562 precorrin-2 dehydroge 54.4 1.2E+02 0.0027 25.0 9.7 93 51-159 24-117 (223)
295 PF08032 SpoU_sub_bind: RNA 2' 54.4 44 0.00096 21.7 5.1 41 76-116 18-58 (76)
296 PRK06767 methionine gamma-lyas 54.2 1.5E+02 0.0032 25.8 10.3 113 38-157 63-181 (386)
297 PRK12656 fructose-6-phosphate 54.0 1.2E+02 0.0027 24.9 8.8 65 61-131 63-132 (222)
298 PRK14364 Maf-like protein; Pro 53.7 1.1E+02 0.0024 24.3 8.4 87 60-158 4-98 (181)
299 cd04192 GT_2_like_e Subfamily 53.7 76 0.0017 24.1 7.1 13 97-109 78-90 (229)
300 PRK12388 fructose-1,6-bisphosp 53.5 50 0.0011 29.0 6.4 38 76-116 155-192 (321)
301 PRK05234 mgsA methylglyoxal sy 53.5 99 0.0021 23.6 9.3 71 76-157 32-111 (142)
302 TIGR01265 tyr_nico_aTase tyros 53.4 1.5E+02 0.0032 25.6 10.7 118 34-157 75-207 (403)
303 cd06369 PBP1_GC_C_enterotoxin_ 53.3 94 0.002 27.9 8.3 52 88-164 66-117 (380)
304 PRK09479 glpX fructose 1,6-bis 53.3 37 0.00081 29.7 5.6 55 76-134 158-212 (319)
305 PRK09288 purT phosphoribosylgl 53.1 48 0.001 28.5 6.4 73 52-129 12-86 (395)
306 cd01516 FBPase_glpX Bacterial 52.9 52 0.0011 28.7 6.4 56 75-134 154-209 (309)
307 PRK13141 hisH imidazole glycer 52.9 94 0.002 24.5 7.7 66 90-159 12-79 (205)
308 PRK11302 DNA-binding transcrip 52.5 88 0.0019 25.6 7.7 42 83-125 184-225 (284)
309 cd00615 Orn_deC_like Ornithine 52.5 1.3E+02 0.0029 24.8 11.7 110 38-157 61-188 (294)
310 TIGR01977 am_tr_V_EF2568 cyste 52.5 1.4E+02 0.0031 25.1 11.7 99 53-157 64-172 (376)
311 PRK06756 flavodoxin; Provision 52.3 52 0.0011 24.4 5.8 66 93-160 22-91 (148)
312 PF01135 PCMT: Protein-L-isoas 52.1 57 0.0012 26.4 6.3 79 49-128 70-151 (209)
313 PRK00726 murG undecaprenyldiph 52.1 1.4E+02 0.003 24.9 11.0 91 52-159 183-279 (357)
314 PRK06234 methionine gamma-lyas 52.0 1.7E+02 0.0036 25.7 11.2 111 36-157 68-186 (400)
315 PRK08064 cystathionine beta-ly 51.8 1.6E+02 0.0036 25.6 11.6 112 38-157 56-173 (390)
316 PRK05749 3-deoxy-D-manno-octul 51.8 1.6E+02 0.0034 25.5 10.4 96 51-159 49-154 (425)
317 PRK00414 gmhA phosphoheptose i 51.8 1.2E+02 0.0026 24.0 9.3 98 39-162 31-148 (192)
318 PF09314 DUF1972: Domain of un 51.7 43 0.00093 26.9 5.5 18 92-109 25-42 (185)
319 TIGR02463 MPGP_rel mannosyl-3- 51.7 17 0.00036 28.6 3.1 32 64-96 21-52 (221)
320 PLN00203 glutamyl-tRNA reducta 51.6 93 0.002 28.9 8.3 83 40-126 250-337 (519)
321 PF01113 DapB_N: Dihydrodipico 51.6 92 0.002 22.7 7.6 92 54-159 2-98 (124)
322 TIGR00875 fsa_talC_mipB fructo 51.3 92 0.002 25.4 7.4 66 60-131 59-128 (213)
323 PF04413 Glycos_transf_N: 3-De 51.3 1.2E+02 0.0026 23.9 8.3 94 53-159 22-125 (186)
324 CHL00188 hisH imidazole glycer 51.3 1.3E+02 0.0028 24.3 8.4 60 91-159 15-81 (210)
325 cd05017 SIS_PGI_PMI_1 The memb 51.3 82 0.0018 22.5 6.5 19 141-159 59-77 (119)
326 PRK08706 lipid A biosynthesis 51.1 87 0.0019 26.1 7.5 15 144-158 209-223 (289)
327 PRK06939 2-amino-3-ketobutyrat 50.7 1.4E+02 0.003 25.2 8.8 113 36-157 87-209 (397)
328 PF00117 GATase: Glutamine ami 50.7 71 0.0015 24.5 6.5 65 91-159 11-79 (192)
329 PRK07806 short chain dehydroge 50.6 72 0.0016 25.0 6.6 101 51-151 5-123 (248)
330 cd00293 USP_Like Usp: Universa 50.6 76 0.0016 21.4 11.2 57 99-158 67-130 (130)
331 cd06578 HemD Uroporphyrinogen- 50.5 54 0.0012 25.5 5.8 50 55-111 176-230 (239)
332 PF02423 OCD_Mu_crystall: Orni 50.4 1E+02 0.0022 26.3 8.0 99 41-142 115-226 (313)
333 PF02882 THF_DHG_CYH_C: Tetrah 50.4 53 0.0012 25.7 5.7 49 50-102 34-82 (160)
334 PRK07309 aromatic amino acid a 50.4 1.7E+02 0.0036 25.2 12.1 117 35-157 70-204 (391)
335 PF10137 TIR-like: Predicted n 50.4 56 0.0012 24.5 5.6 45 54-99 2-46 (125)
336 PRK04311 selenocysteine syntha 50.3 1.7E+02 0.0037 26.6 9.7 114 43-159 134-257 (464)
337 cd06442 DPM1_like DPM1_like re 50.3 76 0.0016 24.2 6.6 59 51-110 27-87 (224)
338 PRK06114 short chain dehydroge 50.3 1.3E+02 0.0027 23.9 8.2 56 51-106 7-62 (254)
339 PRK10537 voltage-gated potassi 50.3 1.9E+02 0.004 25.8 11.8 89 52-158 240-333 (393)
340 KOG4180|consensus 50.3 15 0.00033 32.6 2.8 56 92-158 79-135 (395)
341 PF00590 TP_methylase: Tetrapy 50.3 95 0.0021 24.0 7.2 60 58-118 58-124 (210)
342 PRK12655 fructose-6-phosphate 50.2 1E+02 0.0022 25.4 7.6 67 46-115 47-117 (220)
343 cd04250 AAK_NAGK-C AAK_NAGK-C: 50.2 1.5E+02 0.0032 24.7 10.4 106 53-158 48-197 (279)
344 PRK09261 phospho-2-dehydro-3-d 50.2 1.8E+02 0.004 25.8 9.8 43 88-130 120-168 (349)
345 PRK07792 fabG 3-ketoacyl-(acyl 50.2 1.1E+02 0.0023 25.5 7.9 57 51-107 11-67 (306)
346 PRK10530 pyridoxal phosphate ( 50.2 18 0.00039 29.2 3.1 28 61-89 22-49 (272)
347 PRK12743 oxidoreductase; Provi 50.1 75 0.0016 25.3 6.8 25 77-101 27-51 (256)
348 PRK06015 keto-hydroxyglutarate 50.1 69 0.0015 26.0 6.5 76 81-156 9-101 (201)
349 PRK09590 celB cellobiose phosp 50.1 44 0.00095 24.2 4.9 57 95-160 23-83 (104)
350 PRK09331 Sep-tRNA:Cys-tRNA syn 50.1 1.7E+02 0.0036 25.2 12.8 112 38-158 65-194 (387)
351 TIGR01465 cobM_cbiF precorrin- 50.1 74 0.0016 25.3 6.7 41 78-118 74-117 (229)
352 PRK08213 gluconate 5-dehydroge 50.0 1.3E+02 0.0027 23.9 8.0 54 51-105 11-64 (259)
353 PRK03244 argD acetylornithine 49.8 1.7E+02 0.0036 25.1 11.9 115 38-157 87-222 (398)
354 TIGR00762 DegV EDD domain prot 49.8 68 0.0015 26.7 6.6 89 14-103 41-137 (275)
355 PRK09496 trkA potassium transp 49.8 1.8E+02 0.0038 25.4 9.9 89 54-157 2-96 (453)
356 PF08659 KR: KR domain; Inter 49.7 1.2E+02 0.0025 23.3 10.3 107 55-162 4-137 (181)
357 PRK07179 hypothetical protein; 49.6 1.7E+02 0.0037 25.2 11.9 113 37-157 100-216 (407)
358 TIGR01469 cobA_cysG_Cterm urop 49.6 1.3E+02 0.0029 23.9 9.1 41 78-118 80-123 (236)
359 PRK09191 two-component respons 49.6 1.3E+02 0.0028 23.7 9.7 92 63-161 120-219 (261)
360 PRK09440 avtA valine--pyruvate 49.6 1.7E+02 0.0037 25.3 9.3 121 35-157 77-217 (416)
361 PF00072 Response_reg: Respons 49.5 49 0.0011 22.2 4.9 61 93-160 14-79 (112)
362 TIGR00639 PurN phosphoribosylg 49.4 1.3E+02 0.0029 23.9 8.8 70 54-126 4-87 (190)
363 cd01749 GATase1_PB Glutamine A 49.2 38 0.00082 26.4 4.8 74 79-159 3-76 (183)
364 COG0794 GutQ Predicted sugar p 49.2 50 0.0011 27.0 5.5 39 48-87 83-124 (202)
365 PF00258 Flavodoxin_1: Flavodo 49.1 1E+02 0.0022 22.4 7.0 44 92-136 16-62 (143)
366 TIGR02764 spore_ybaN_pdaB poly 49.1 49 0.0011 25.6 5.4 30 36-65 136-168 (191)
367 PF00582 Usp: Universal stress 49.0 26 0.00055 24.0 3.4 38 118-158 102-139 (140)
368 PRK06719 precorrin-2 dehydroge 49.0 1.2E+02 0.0026 23.2 8.2 88 51-158 12-100 (157)
369 PF04321 RmlD_sub_bind: RmlD s 48.7 62 0.0013 26.9 6.2 89 54-160 2-101 (286)
370 PRK12415 fructose 1,6-bisphosp 48.7 64 0.0014 28.3 6.4 38 76-116 156-193 (322)
371 smart00594 UAS UAS domain. 48.7 1E+02 0.0022 22.3 7.2 79 64-160 16-94 (122)
372 cd06420 GT2_Chondriotin_Pol_N 48.5 63 0.0014 23.7 5.7 12 51-62 26-37 (182)
373 PF00185 OTCace: Aspartate/orn 48.4 1.2E+02 0.0025 23.3 7.3 72 51-124 1-79 (158)
374 PLN02516 methylenetetrahydrofo 48.4 55 0.0012 28.3 5.9 36 51-86 166-201 (299)
375 TIGR02356 adenyl_thiF thiazole 48.3 1.4E+02 0.003 23.7 10.1 105 44-159 14-143 (202)
376 PLN02368 alanine transaminase 48.3 1.9E+02 0.0042 25.5 10.6 116 35-156 110-247 (407)
377 PF00391 PEP-utilizers: PEP-ut 48.3 11 0.00025 25.6 1.4 27 129-160 35-61 (80)
378 PRK14012 cysteine desulfurase; 48.2 1.8E+02 0.0039 25.1 11.8 110 45-159 58-181 (404)
379 PRK15482 transcriptional regul 48.1 1.6E+02 0.0034 24.4 9.5 64 91-161 151-218 (285)
380 TIGR03537 DapC succinyldiamino 48.0 1.7E+02 0.0036 24.7 13.1 119 35-157 39-174 (350)
381 PRK12745 3-ketoacyl-(acyl-carr 48.0 1.3E+02 0.0029 23.5 8.9 54 53-106 3-56 (256)
382 cd01742 GATase1_GMP_Synthase T 48.0 66 0.0014 24.5 5.9 64 91-159 12-77 (181)
383 PRK12564 carbamoyl phosphate s 48.0 1.2E+02 0.0026 26.8 8.1 74 77-159 178-255 (360)
384 PRK13111 trpA tryptophan synth 47.8 1.7E+02 0.0036 24.6 11.0 103 54-158 93-206 (258)
385 PRK02186 argininosuccinate lya 47.8 91 0.002 30.6 8.0 31 78-108 4-34 (887)
386 PF14359 DUF4406: Domain of un 47.5 24 0.00052 25.0 3.1 64 93-156 21-90 (92)
387 PRK11557 putative DNA-binding 47.4 1E+02 0.0022 25.3 7.3 86 41-126 117-227 (278)
388 PF03358 FMN_red: NADPH-depend 47.3 46 0.001 24.5 4.8 16 113-128 65-80 (152)
389 PRK10717 cysteine synthase A; 47.3 1.3E+02 0.0028 25.6 8.1 57 49-109 61-118 (330)
390 PRK10669 putative cation:proto 47.1 1.6E+02 0.0036 26.9 9.2 67 52-125 417-488 (558)
391 cd05013 SIS_RpiR RpiR-like pro 47.0 98 0.0021 21.7 9.2 88 43-160 4-95 (139)
392 PRK07178 pyruvate carboxylase 47.0 50 0.0011 29.8 5.8 35 53-88 3-37 (472)
393 PRK05928 hemD uroporphyrinogen 46.9 50 0.0011 26.0 5.2 50 54-110 179-234 (249)
394 PRK09257 aromatic amino acid a 46.9 1.9E+02 0.0041 24.9 12.2 119 35-157 72-210 (396)
395 TIGR03542 DAPAT_plant LL-diami 46.8 1.9E+02 0.0041 24.9 9.9 117 34-157 77-211 (402)
396 TIGR01822 2am3keto_CoA 2-amino 46.7 1.8E+02 0.0039 24.7 9.2 109 43-157 90-205 (393)
397 PRK05634 nucleosidase; Provisi 46.7 19 0.00041 28.6 2.7 26 133-158 126-151 (185)
398 TIGR01182 eda Entner-Doudoroff 46.6 81 0.0017 25.7 6.4 75 82-156 14-105 (204)
399 TIGR00888 guaA_Nterm GMP synth 46.5 89 0.0019 24.2 6.5 63 92-159 13-77 (188)
400 PRK05939 hypothetical protein; 46.4 2.1E+02 0.0045 25.2 11.5 111 40-157 51-166 (397)
401 cd05005 SIS_PHI Hexulose-6-pho 46.2 1.3E+02 0.0029 23.0 7.8 88 43-161 24-111 (179)
402 PRK14058 acetylglutamate/acety 46.1 1.4E+02 0.0031 24.7 8.0 110 48-157 24-187 (268)
403 PRK05568 flavodoxin; Provision 46.0 82 0.0018 22.9 5.9 65 94-160 23-90 (142)
404 PRK00758 GMP synthase subunit 45.7 1.1E+02 0.0024 23.6 6.9 61 91-159 13-74 (184)
405 PRK12475 thiamine/molybdopteri 45.6 2E+02 0.0044 24.9 10.7 109 40-159 13-148 (338)
406 PRK08363 alanine aminotransfer 45.6 2E+02 0.0043 24.7 10.8 118 34-157 72-204 (398)
407 TIGR00330 glpX fructose-1,6-bi 45.5 87 0.0019 27.5 6.6 39 75-116 154-192 (321)
408 cd06502 TA_like Low-specificit 45.4 1.7E+02 0.0037 24.0 10.3 117 36-157 32-164 (338)
409 PF05185 PRMT5: PRMT5 arginine 45.1 58 0.0013 29.6 5.8 82 40-123 169-263 (448)
410 KOG0029|consensus 45.0 34 0.00073 31.6 4.4 75 75-158 14-94 (501)
411 PRK09148 aminotransferase; Val 45.0 2.1E+02 0.0045 24.8 10.7 117 35-157 71-203 (405)
412 TIGR00393 kpsF KpsF/GutQ famil 45.0 1E+02 0.0023 24.9 6.9 64 91-161 16-83 (268)
413 cd06439 CESA_like_1 CESA_like_ 44.9 1E+02 0.0023 24.0 6.8 7 103-109 111-117 (251)
414 PRK09987 dTDP-4-dehydrorhamnos 44.8 72 0.0016 26.4 6.0 23 136-158 80-102 (299)
415 TIGR02144 LysX_arch Lysine bio 44.8 52 0.0011 26.7 5.1 25 87-111 9-33 (280)
416 PRK05637 anthranilate synthase 44.7 98 0.0021 24.9 6.6 73 78-159 3-80 (208)
417 PRK13010 purU formyltetrahydro 44.7 1.4E+02 0.0029 25.6 7.8 68 54-126 97-177 (289)
418 PRK08636 aspartate aminotransf 44.6 2.1E+02 0.0045 24.7 11.1 117 35-157 74-213 (403)
419 PRK14172 bifunctional 5,10-met 44.6 77 0.0017 27.1 6.2 57 87-143 168-233 (278)
420 TIGR01815 TrpE-clade3 anthrani 44.5 2E+02 0.0043 27.9 9.6 77 75-159 515-595 (717)
421 PRK08462 biotin carboxylase; V 44.5 65 0.0014 28.5 6.0 36 52-88 4-39 (445)
422 PRK05647 purN phosphoribosylgl 44.4 1.6E+02 0.0034 23.6 7.8 69 54-125 5-87 (200)
423 cd04196 GT_2_like_d Subfamily 44.4 1.3E+02 0.0028 22.5 7.0 9 53-61 29-37 (214)
424 PTZ00377 alanine aminotransfer 44.4 2.3E+02 0.0051 25.3 10.9 117 35-156 118-255 (481)
425 PRK11761 cysM cysteine synthas 44.4 1.6E+02 0.0034 24.8 8.1 56 49-108 60-116 (296)
426 COG4874 Uncharacterized protei 44.3 68 0.0015 27.5 5.7 79 74-157 209-295 (318)
427 PRK07504 O-succinylhomoserine 44.3 2.2E+02 0.0048 24.9 11.1 114 38-157 67-185 (398)
428 PRK00141 murD UDP-N-acetylmura 44.3 2.2E+02 0.0048 25.5 9.5 89 51-156 14-102 (473)
429 PRK13355 bifunctional HTH-doma 44.2 2.5E+02 0.0053 25.5 10.7 117 35-157 188-319 (517)
430 PRK06444 prephenate dehydrogen 44.2 28 0.00062 28.0 3.4 29 87-125 10-38 (197)
431 cd05017 SIS_PGI_PMI_1 The memb 44.2 90 0.002 22.3 5.8 58 48-111 40-100 (119)
432 PRK08591 acetyl-CoA carboxylas 44.0 95 0.0021 27.4 7.0 34 53-87 3-36 (451)
433 PRK13936 phosphoheptose isomer 43.9 1.6E+02 0.0035 23.3 9.5 36 91-126 128-166 (197)
434 PRK06348 aspartate aminotransf 43.9 2.1E+02 0.0045 24.5 10.9 117 35-157 69-200 (384)
435 PLN02483 serine palmitoyltrans 43.8 2.1E+02 0.0045 26.0 9.3 130 16-157 125-275 (489)
436 PRK10792 bifunctional 5,10-met 43.7 2.1E+02 0.0046 24.6 9.3 47 51-101 158-204 (285)
437 TIGR01139 cysK cysteine syntha 43.6 1.6E+02 0.0035 24.6 8.0 58 49-110 54-112 (298)
438 PRK08811 uroporphyrinogen-III 43.6 48 0.001 27.7 4.8 52 52-110 190-246 (266)
439 PRK08931 5'-methylthioadenosin 43.5 1.4E+02 0.0031 25.6 7.7 50 54-103 127-181 (289)
440 TIGR02134 transald_staph trans 43.3 1.4E+02 0.003 24.9 7.4 57 60-116 66-127 (236)
441 PRK10637 cysG siroheme synthas 43.1 1.8E+02 0.0039 26.2 8.7 92 51-158 11-103 (457)
442 PF00070 Pyr_redox: Pyridine n 43.1 95 0.0021 20.4 7.1 51 55-105 2-58 (80)
443 PLN02686 cinnamoyl-CoA reducta 43.1 2.2E+02 0.0047 24.5 9.0 109 48-159 49-178 (367)
444 PRK05784 phosphoribosylamine-- 43.0 46 0.00099 30.5 4.9 75 54-129 2-80 (486)
445 TIGR00393 kpsF KpsF/GutQ famil 42.8 46 0.001 27.0 4.5 33 93-125 66-98 (268)
446 KOG0387|consensus 42.8 1.4E+02 0.003 29.7 8.1 87 38-124 532-623 (923)
447 PRK14177 bifunctional 5,10-met 42.7 79 0.0017 27.2 6.0 54 88-141 170-232 (284)
448 PRK06718 precorrin-2 dehydroge 42.7 1.7E+02 0.0038 23.3 8.8 93 51-159 9-101 (202)
449 COG2984 ABC-type uncharacteriz 42.6 2.4E+02 0.0051 24.8 9.7 77 75-158 160-245 (322)
450 PRK15116 sulfur acceptor prote 42.6 2.1E+02 0.0045 24.2 9.3 108 41-158 20-152 (268)
451 cd05213 NAD_bind_Glutamyl_tRNA 42.5 1.2E+02 0.0026 25.7 7.2 70 51-126 177-246 (311)
452 TIGR01825 gly_Cac_T_rel pyrido 42.5 2E+02 0.0044 24.2 8.6 115 35-157 77-198 (385)
453 PRK08945 putative oxoacyl-(acy 42.5 1.4E+02 0.0029 23.5 7.1 50 50-101 10-60 (247)
454 PRK05937 8-amino-7-oxononanoat 42.4 2E+02 0.0044 24.5 8.6 35 121-157 144-178 (370)
455 cd05008 SIS_GlmS_GlmD_1 SIS (S 42.4 78 0.0017 22.4 5.2 33 92-124 64-96 (126)
456 PRK05718 keto-hydroxyglutarate 42.4 1.1E+02 0.0025 24.8 6.7 76 81-156 20-112 (212)
457 TIGR03127 RuMP_HxlB 6-phospho 42.3 75 0.0016 24.3 5.4 89 42-161 20-108 (179)
458 PRK05664 threonine-phosphate d 42.3 2.1E+02 0.0045 24.0 10.5 109 35-156 52-161 (330)
459 PRK06823 ornithine cyclodeamin 42.3 2.2E+02 0.0048 24.4 10.2 99 41-143 115-225 (315)
460 TIGR00204 dxs 1-deoxy-D-xylulo 42.2 1.9E+02 0.0041 27.3 8.9 65 91-160 511-584 (617)
461 PRK06703 flavodoxin; Provision 42.2 66 0.0014 23.9 5.0 66 93-159 22-89 (151)
462 cd00610 OAT_like Acetyl ornith 42.2 2.2E+02 0.0047 24.3 11.4 120 36-157 79-230 (413)
463 PF02602 HEM4: Uroporphyrinoge 42.1 30 0.00066 27.2 3.2 51 53-110 169-223 (231)
464 PRK13152 hisH imidazole glycer 41.9 46 0.001 26.3 4.3 65 91-159 13-80 (201)
465 cd06259 YdcF-like YdcF-like. Y 41.8 1.2E+02 0.0027 22.2 6.4 32 78-109 68-103 (150)
466 PF02441 Flavoprotein: Flavopr 41.8 56 0.0012 23.9 4.4 40 117-158 72-116 (129)
467 cd00401 AdoHcyase S-adenosyl-L 41.8 1.6E+02 0.0034 26.6 8.0 67 47-124 197-263 (413)
468 PLN02509 cystathionine beta-ly 41.6 2.7E+02 0.006 25.3 10.8 114 37-157 134-252 (464)
469 PLN02225 1-deoxy-D-xylulose-5- 41.6 1.5E+02 0.0032 28.8 8.2 64 89-158 581-656 (701)
470 PRK07671 cystathionine beta-ly 41.5 2.4E+02 0.0052 24.5 11.6 114 36-157 50-169 (377)
471 PRK15473 cbiF cobalt-precorrin 41.5 96 0.0021 25.6 6.2 44 74-118 80-126 (257)
472 CHL00197 carA carbamoyl-phosph 41.4 1.7E+02 0.0037 26.1 8.1 46 77-125 193-240 (382)
473 PRK06460 hypothetical protein; 41.3 2.4E+02 0.0052 24.5 11.4 60 94-157 102-165 (376)
474 PRK07505 hypothetical protein; 41.3 2.3E+02 0.0051 24.4 10.5 115 37-157 92-214 (402)
475 PTZ00075 Adenosylhomocysteinas 41.3 2E+02 0.0044 26.5 8.7 84 49-143 251-344 (476)
476 COG4822 CbiK Cobalamin biosynt 41.2 1.7E+02 0.0037 24.7 7.5 32 76-109 169-201 (265)
477 cd01491 Ube1_repeat1 Ubiquitin 41.2 2.3E+02 0.0049 24.2 10.0 98 52-159 19-137 (286)
478 PF08484 Methyltransf_14: C-me 41.2 30 0.00064 27.0 3.0 78 16-93 22-109 (160)
479 KOG0822|consensus 41.2 1E+02 0.0022 29.3 6.8 85 39-123 350-444 (649)
480 COG0521 MoaB Molybdopterin bio 41.2 46 0.00099 26.5 4.0 58 76-134 9-76 (169)
481 cd00956 Transaldolase_FSA Tran 41.1 1.9E+02 0.0041 23.3 10.8 95 60-160 59-163 (211)
482 PF03435 Saccharop_dh: Sacchar 41.1 2.1E+02 0.0045 24.7 8.5 91 55-156 1-95 (386)
483 cd06452 SepCysS Sep-tRNA:Cys-t 41.1 2.2E+02 0.0048 24.0 13.1 145 5-158 7-175 (361)
484 TIGR00099 Cof-subfamily Cof su 41.1 34 0.00075 27.5 3.5 27 61-88 18-44 (256)
485 PRK08354 putative aminotransfe 41.0 2.1E+02 0.0045 23.7 9.4 111 35-157 43-155 (311)
486 PRK05749 3-deoxy-D-manno-octul 40.9 2.4E+02 0.0052 24.4 9.9 73 75-157 261-349 (425)
487 PRK06358 threonine-phosphate d 40.9 2.2E+02 0.0049 24.1 10.1 113 35-157 57-179 (354)
488 COG1587 HemD Uroporphyrinogen- 40.7 72 0.0016 26.0 5.3 59 43-109 42-105 (248)
489 PRK07239 bifunctional uroporph 40.7 62 0.0013 28.1 5.2 57 46-110 194-262 (381)
490 PTZ00175 diphthine synthase; P 40.7 1E+02 0.0022 26.1 6.3 49 66-116 69-119 (270)
491 TIGR01136 cysKM cysteine synth 40.5 2E+02 0.0043 24.0 8.1 58 49-110 55-113 (299)
492 PRK04296 thymidine kinase; Pro 40.5 1.2E+02 0.0025 23.7 6.4 50 74-123 76-137 (190)
493 PF03320 FBPase_glpX: Bacteria 40.5 42 0.0009 29.3 4.0 39 76-117 155-193 (309)
494 PRK10976 putative hydrolase; P 40.5 31 0.00067 27.9 3.1 28 61-89 21-48 (266)
495 TIGR02992 ectoine_eutC ectoine 40.5 2.2E+02 0.0048 24.3 8.5 97 42-141 117-225 (326)
496 TIGR01918 various_sel_PB selen 40.4 69 0.0015 29.3 5.5 49 89-160 324-372 (431)
497 COG1737 RpiR Transcriptional r 40.3 1.5E+02 0.0032 24.8 7.3 66 89-161 144-213 (281)
498 PRK14368 Maf-like protein; Pro 40.3 1.9E+02 0.0042 23.2 9.3 93 54-158 6-106 (193)
499 PRK12828 short chain dehydroge 40.2 1.7E+02 0.0036 22.4 7.9 52 51-104 6-58 (239)
500 PRK05576 cobalt-precorrin-2 C( 40.2 1.4E+02 0.003 24.1 6.9 56 62-118 78-136 (229)
No 1
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=4.3e-41 Score=283.21 Aligned_cols=129 Identities=22% Similarity=0.316 Sum_probs=125.2
Q ss_pred ChHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH
Q psy2575 34 ANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM 112 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav 112 (165)
..+++++|++++.++|++|++|||||+|+||+++|..|++ +++|+|||+||||.+||.+||++|.+.||||++|+|+++
T Consensus 92 ~~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~ 171 (275)
T PRK08335 92 MEEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQL 171 (275)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHH
Confidence 4677999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
+++|+++|+|++|||+|++||+++||+|||++|++||+|+|||||+||+.
T Consensus 172 ~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~ 221 (275)
T PRK08335 172 GLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETF 221 (275)
T ss_pred HHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECccc
Confidence 99999999999999999999999999999999999999999999999863
No 2
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=4.1e-41 Score=286.49 Aligned_cols=129 Identities=24% Similarity=0.371 Sum_probs=125.1
Q ss_pred ChHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH
Q psy2575 34 ANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM 112 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav 112 (165)
...++++|++++.++|++|++|||||+|+||+++|+.|++ +++|+|||+||||.+||+.+|++|.+.||||++|+|+++
T Consensus 98 ~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~ 177 (301)
T TIGR00511 98 SDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAV 177 (301)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHH
Confidence 4677999999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
+++|+++|+|++|||+|++||+++||+||+++|++||+|+|||||+||+.
T Consensus 178 ~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~ 227 (301)
T TIGR00511 178 RYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETY 227 (301)
T ss_pred HHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccc
Confidence 99999999999999999999999999999999999999999999999963
No 3
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=5.3e-41 Score=286.72 Aligned_cols=129 Identities=26% Similarity=0.387 Sum_probs=124.9
Q ss_pred ChHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH
Q psy2575 34 ANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM 112 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav 112 (165)
...++++|++++.++|++|++|||||+|+||+++|+.|++ +++|+|||+||||.+||+.+|++|.+.||||++|+|+++
T Consensus 103 ~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav 182 (310)
T PRK08535 103 SENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAV 182 (310)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHH
Confidence 4667999999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
+++|++||+|++|||+|++||+++||+||+++|++||+|+|||||+||+.
T Consensus 183 ~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 183 RYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred HHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 99999999999999999999999999999999999999999999999863
No 4
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=8e-41 Score=279.67 Aligned_cols=128 Identities=38% Similarity=0.575 Sum_probs=113.3
Q ss_pred ChHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH
Q psy2575 34 ANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM 112 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav 112 (165)
..+++++|++++.++|++|++|||||||++|+++|.+|++ +++|+|||+||||.+||+.+|++|++.||+|++|+|+++
T Consensus 90 ~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~ 169 (282)
T PF01008_consen 90 IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAV 169 (282)
T ss_dssp HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGH
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHH
Confidence 5778999999999999999999999999999999999988 799999999999999999999999999999999999999
Q ss_pred HHhchh-CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 113 FGLISR-VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 113 ~~~m~~-v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
+++|++ ||+|++|||+|++||+++|++||+++|++||+|+|||||+||+
T Consensus 170 ~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 170 GYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAES 219 (282)
T ss_dssp HHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--G
T ss_pred HHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEccc
Confidence 999999 9999999999999999999999999999999999999999986
No 5
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-40 Score=278.85 Aligned_cols=128 Identities=34% Similarity=0.524 Sum_probs=124.6
Q ss_pred ChHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH
Q psy2575 34 ANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM 112 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav 112 (165)
.+.+.+.|++.++++|+||++|||||+|++|+.+|..|++ +++|+|||+||||.+||+.||+.|++.||++++|+||++
T Consensus 102 ~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~ 181 (301)
T COG1184 102 VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAV 181 (301)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHH
Confidence 4677999999999999999999999999999999999998 788999999999999999999999999999999999999
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
+++|++||+|++|||+|+.||+++||+||+++|++||++++||||+|++
T Consensus 182 ~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aes 230 (301)
T COG1184 182 GAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAES 230 (301)
T ss_pred HHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeee
Confidence 9999999999999999999999999999999999999999999999985
No 6
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=2.5e-39 Score=275.90 Aligned_cols=128 Identities=22% Similarity=0.339 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCC--------HHHHHHHHHHHh-CCceEEEEecCCCCChH-HHHHHHHhhcCCce
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYS--------KIVELFLKNAAQ-HRKFQCIVMENSPENKG-HELAVSLAKSKIQT 104 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S--------~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG-~~la~~L~~~GI~v 104 (165)
.+++++|++++.++|++|++|||||+| +||+.+|+.|++ +++|+|||+||||.+|| +.++++|.+.||||
T Consensus 102 ~~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~v 181 (303)
T TIGR00524 102 LETNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDV 181 (303)
T ss_pred HHHHHHHHHHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCE
Confidence 567899999999999999999999999 999999999987 79999999999999999 88899999999999
Q ss_pred EEEccchHHHhch--hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 105 VLIPDSAMFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 105 ~~I~dsav~~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
++|+|++++++|+ ++|+|++|||+|++||+++||+||+++|++||+|+|||||+||+.
T Consensus 182 tlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~s~ 241 (303)
T TIGR00524 182 TLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAPLS 241 (303)
T ss_pred EEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecccc
Confidence 9999999999999 999999999999999999999999999999999999999999863
No 7
>KOG1465|consensus
Probab=100.00 E-value=7e-38 Score=264.15 Aligned_cols=151 Identities=52% Similarity=0.792 Sum_probs=137.8
Q ss_pred cccchhhHHHhhhhccCCc--cccCC----------------------hHHHHHHHHHHhcccCCCCEEEEecCCHHHHH
Q psy2575 11 EDDNYQESLHKLVVSSDDE--ATDFA----------------------NPTSDTAPSQACEHIHSNEIILTLGYSKIVEL 66 (165)
Q Consensus 11 ~~~~~~~sL~~~~~~~~~~--~~d~~----------------------~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~ 66 (165)
.|+...+||++||...+.. -.+++ +..+|+|+.+|.++|+++++|||+|.|+||++
T Consensus 98 ~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~Eie~~~E~Ia~Qa~ehihsnEviLT~g~SrTV~~ 177 (353)
T KOG1465|consen 98 DESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITEIEGSRENIAVQAIEHIHSNEVILTLGSSRTVEN 177 (353)
T ss_pred CCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhccCceEEecCccHHHHH
Confidence 3445678999999955531 13332 34489999999999999999999999999999
Q ss_pred HHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHH
Q psy2575 67 FLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVA 145 (165)
Q Consensus 67 ~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lA 145 (165)
||+.|.+ +|+|+|+|.|..|.++|+.||+.|.++||++++|+|+++++.|++|+||++|+++|++|||+...+|.+++|
T Consensus 178 FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~avl~NGgl~~~~G~~~vA 257 (353)
T KOG1465|consen 178 FLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLANGGLRAPSGVHTVA 257 (353)
T ss_pred HHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecCCCeeccchHHHHH
Confidence 9999999 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcEEEEeec
Q psy2575 146 LAAQHYSIPYPCTFLL 161 (165)
Q Consensus 146 l~Ak~~~vPv~V~~~~ 161 (165)
++||+|.+|||||+|+
T Consensus 258 laAk~h~vPv~VlAp~ 273 (353)
T KOG1465|consen 258 LAAKHHSVPVIVLAPM 273 (353)
T ss_pred HHHHhcCCcEEEecch
Confidence 9999999999999985
No 8
>KOG1466|consensus
Probab=100.00 E-value=4.4e-38 Score=261.17 Aligned_cols=127 Identities=30% Similarity=0.421 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHH
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMF 113 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~ 113 (165)
..+|..|+..+.++|.||++|||||||+.|.+.|..|++ +++|+|+|+||+|...|..|++.|.+.||||+++.||+++
T Consensus 114 ~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlDSaVg 193 (313)
T KOG1466|consen 114 RKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLDSAVG 193 (313)
T ss_pred HHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEecCCCCCchhHHHHHHHhcCCCeEEEehhhHH
Confidence 556889999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred HhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 114 GLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 114 ~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
|.|.++|+|++|||.|.++||++|++||+++|++||+.++||||++|+
T Consensus 194 yvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES 241 (313)
T KOG1466|consen 194 YVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAES 241 (313)
T ss_pred HHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeec
Confidence 999999999999999999999999999999999999999999999986
No 9
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=269.42 Aligned_cols=129 Identities=20% Similarity=0.246 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHHhcccCCCCEEEEecCCH--------HHHHHHHHHHh-CCceEEEEecCCCCChHHHH-HHHHhhcCCc
Q psy2575 34 ANPTSDTAPSQACEHIHSNEIILTLGYSK--------IVELFLKNAAQ-HRKFQCIVMENSPENKGHEL-AVSLAKSKIQ 103 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~--------tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~l-a~~L~~~GI~ 103 (165)
..+++++|++++.++|++|++|||||+|. |++.+|..|++ +++|+|||+||||.+||.++ |++|.+.|||
T Consensus 129 ~~~~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~ 208 (344)
T PRK05720 129 DVEINRAIGEHGLTLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGID 208 (344)
T ss_pred HHHHHHHHHHHHHHHccCCCEEEEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCC
Confidence 45678999999999999999999999986 56789999987 89999999999999999855 9999999999
Q ss_pred eEEEccchHHHhchh--CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 104 TVLIPDSAMFGLISR--VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 104 v~~I~dsav~~~m~~--v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
|++|+|++++++|++ +|+|++|||+|++||+++||+||+++|++||+|+|||||+||++
T Consensus 209 vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~ 269 (344)
T PRK05720 209 VTVITDNMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSS 269 (344)
T ss_pred EEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecccc
Confidence 999999999999984 99999999999999999999999999999999999999999973
No 10
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=1.2e-37 Score=268.13 Aligned_cols=146 Identities=20% Similarity=0.263 Sum_probs=128.3
Q ss_pred hHHHhhhhccCCccccCChHHHHHHHHHHhcccCCCC----EEEEecCC--------HHHHHHHHHHHh-CCceEEEEec
Q psy2575 17 ESLHKLVVSSDDEATDFANPTSDTAPSQACEHIHSNE----IILTLGYS--------KIVELFLKNAAQ-HRKFQCIVME 83 (165)
Q Consensus 17 ~sL~~~~~~~~~~~~d~~~~~~~~Ia~~a~~~I~~~~----~ILT~g~S--------~tV~~~L~~A~~-~~~f~ViV~E 83 (165)
+.+++.+.+....-.+....++++|++++.++|++|+ +||||++| +|++.+|+.|++ +++|+|||+|
T Consensus 108 ~~~k~~l~e~a~~~~~e~~~~~~~I~~~g~~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~E 187 (331)
T TIGR00512 108 ADIKEALLAEAERILEEDLEDNRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADE 187 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECC
Confidence 4455545523322223345679999999999999999 99999765 489999999997 8999999999
Q ss_pred CCCCChHHHH-HHHHhhcCCceEEEccchHHHhch--hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 84 NSPENKGHEL-AVSLAKSKIQTVLIPDSAMFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 84 s~P~~eG~~l-a~~L~~~GI~v~~I~dsav~~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
|||..||.++ +++|.+.||||++|+|++++++|+ ++|+|++|||+|++||+++||+||+++|++||+|+|||||+||
T Consensus 188 srP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 188 TRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred CCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 9999999855 999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred cc
Q psy2575 161 LN 162 (165)
Q Consensus 161 ~~ 162 (165)
+.
T Consensus 268 ~~ 269 (331)
T TIGR00512 268 TS 269 (331)
T ss_pred cc
Confidence 53
No 11
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2.2e-37 Score=267.19 Aligned_cols=145 Identities=18% Similarity=0.292 Sum_probs=127.3
Q ss_pred hHHHhhhhccCCccccCChHHHHHHHHHHhcccCCCCEEEEecCCH--------HHHHHHHHHHh-CCceEEEEecCCCC
Q psy2575 17 ESLHKLVVSSDDEATDFANPTSDTAPSQACEHIHSNEIILTLGYSK--------IVELFLKNAAQ-HRKFQCIVMENSPE 87 (165)
Q Consensus 17 ~sL~~~~~~~~~~~~d~~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~--------tV~~~L~~A~~-~~~f~ViV~Es~P~ 87 (165)
+.++..+.++...-.+...+++++|++++.++|++|++||||++|. |++.+|+.|++ +|+|+|||+||||.
T Consensus 113 ~~~~~~~~e~a~~~~~e~~~~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~ 192 (339)
T PRK06036 113 EEIRDIALREAERIAEEDVARNKLIGKHGAKLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPL 192 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCch
Confidence 4444444423322233346779999999999999999999999885 77899999987 79999999999999
Q ss_pred ChHHHH-HHHHhhcCCceEEEccchHHHhchh--CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 88 NKGHEL-AVSLAKSKIQTVLIPDSAMFGLISR--VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 88 ~eG~~l-a~~L~~~GI~v~~I~dsav~~~m~~--v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
+||.+| +++|.+.||||++|+|++++++|++ +|+|++|||+|++|| ++||+|||++|++||+|+|||||+||++
T Consensus 193 ~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s 269 (339)
T PRK06036 193 NQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLS 269 (339)
T ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHhccCCCCEEEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecC
Confidence 999886 8999999999999999999999987 999999999999996 9999999999999999999999999864
No 12
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.1e-36 Score=261.65 Aligned_cols=128 Identities=23% Similarity=0.254 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCH--------HHHHHHHHHHh-CCceEEEEecCCCCChHHHH-HHHHhhcCCce
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSK--------IVELFLKNAAQ-HRKFQCIVMENSPENKGHEL-AVSLAKSKIQT 104 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~--------tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~l-a~~L~~~GI~v 104 (165)
...+++|++++.++|++|++||||++|. |++.+|+.|++ +++|+|||.||||..||.+| +++|.+.||||
T Consensus 120 ~~~~~~I~~~g~~~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~v 199 (329)
T PRK06371 120 IGRSKKIGEYGNELIKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDH 199 (329)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCE
Confidence 3457899999999999999999999773 56899999997 89999999999999999886 99999999999
Q ss_pred EEEccchHHHhchh--CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 105 VLIPDSAMFGLISR--VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 105 ~~I~dsav~~~m~~--v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
++|+|++++++|++ +|+|++|||+|++||+++||+||+++|++||+|+|||||+||++
T Consensus 200 tlI~Dsa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~ 259 (329)
T PRK06371 200 AIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGS 259 (329)
T ss_pred EEEcccHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecccc
Confidence 99999999999975 99999999999999999999999999999999999999999953
No 13
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.4e-36 Score=253.23 Aligned_cols=123 Identities=25% Similarity=0.404 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHh
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGL 115 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~ 115 (165)
.+.+.|+++|.++| +|++|||||+|++|++||..++ +.|+|||+||||.+||+.+|++|.+.||+|++|+|++++++
T Consensus 72 ~~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~~--~~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~~ 148 (253)
T PRK06372 72 KHEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSSE--KIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCEA 148 (253)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhcC--CCCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHHH
Confidence 55778999999999 6789999999999999997653 45899999999999999999999999999999999999999
Q ss_pred chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 116 ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 116 m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
|++||+|++|||+|++||+++||+||+++|++||+|+|||||+|+.
T Consensus 149 m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s 194 (253)
T PRK06372 149 VLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTIS 194 (253)
T ss_pred HHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeec
Confidence 9999999999999999999999999999999999999999999985
No 14
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=7.6e-37 Score=265.62 Aligned_cols=129 Identities=20% Similarity=0.241 Sum_probs=120.8
Q ss_pred ChHHHHHHHHHHhcccCCCCEEEEecCCH---------HHHHHHHHHHh-CCceEEEEecCCCCChHHHH-HHHHhhcCC
Q psy2575 34 ANPTSDTAPSQACEHIHSNEIILTLGYSK---------IVELFLKNAAQ-HRKFQCIVMENSPENKGHEL-AVSLAKSKI 102 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~---------tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~l-a~~L~~~GI 102 (165)
...++++|++++.++|++|++|||||+|. |+...|..|++ +++|+|||+||||..||.++ +++|.+.||
T Consensus 149 d~~~~~~I~~~g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI 228 (363)
T PRK05772 149 EYDAEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGI 228 (363)
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCC
Confidence 35679999999999999999999999874 67888888887 89999999999999999866 899999999
Q ss_pred ceEEEccchHHHhchh--CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 103 QTVLIPDSAMFGLISR--VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 103 ~v~~I~dsav~~~m~~--v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
||++|+|++++++|++ +|+|++|||+|++||+++||+|||++|++||+|+|||||+||++
T Consensus 229 pvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~ 290 (363)
T PRK05772 229 KVTLITDTAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTS 290 (363)
T ss_pred CEEEEehhHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEcccc
Confidence 9999999999999965 99999999999999999999999999999999999999999974
No 15
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=3.6e-36 Score=260.65 Aligned_cols=127 Identities=23% Similarity=0.221 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEec--------CCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHH-HHHHhhcCCce
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLG--------YSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHEL-AVSLAKSKIQT 104 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g--------~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~l-a~~L~~~GI~v 104 (165)
..++++|++++.++|.||+ ||||+ +|.|++.+|..|++ ++.|+|||+||||.+||.+| +++|.+.||||
T Consensus 144 ~~~~~~Ig~~g~~li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~v 222 (356)
T PRK08334 144 VEANLRMGHYGAEVLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPL 222 (356)
T ss_pred HHHHHHHHHHHHhhcCCCC-EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCE
Confidence 5669999999999999999 99999 46899999999998 89999999999999999999 78999999999
Q ss_pred EEEccchHHHhch--hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 105 VLIPDSAMFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 105 ~~I~dsav~~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
++|+|++++++|+ ++|+|++|||+|++||+++||+|||++|++||+|+|||||+||++
T Consensus 223 tlI~Dsav~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~ 282 (356)
T PRK08334 223 KLISDNMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLS 282 (356)
T ss_pred EEEehhHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccC
Confidence 9999999999997 699999999999999999999999999999999999999999854
No 16
>KOG1467|consensus
Probab=100.00 E-value=1.6e-34 Score=255.39 Aligned_cols=127 Identities=25% Similarity=0.438 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHH
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMF 113 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~ 113 (165)
-.+...|.+++.+.|+|||+|||||+|++|..+|.+|++ +++|+|+|+||||.+||+.+++.|.++||+|+|...++++
T Consensus 343 ~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~s 422 (556)
T KOG1467|consen 343 ILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAAS 422 (556)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHH
Confidence 456888999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 114 GLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 114 ~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
|+|.++++||+||+++++||.+++++||.++||+|++|||||+||||.
T Consensus 423 yim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~ 470 (556)
T KOG1467|consen 423 YIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEA 470 (556)
T ss_pred HHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEech
Confidence 999999999999999999999999999999999999999999999985
No 17
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.2e-31 Score=226.59 Aligned_cols=126 Identities=24% Similarity=0.372 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhcccCCCCEEEEec---------CCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHH-HHHHhhcCCce
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLG---------YSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHEL-AVSLAKSKIQT 104 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g---------~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~l-a~~L~~~GI~v 104 (165)
..+..|+++++++|.++++||||+ |+ |.+..++.|++ |+..+||+.|+||..||.+| |++|.+.|||+
T Consensus 134 e~n~~iG~~G~~ll~~~~~VLThCNaGaLAt~~~G-TAlgviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpv 212 (346)
T COG0182 134 EANRAIGENGAELLPDGDTVLTHCNAGALATVGYG-TALGVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPV 212 (346)
T ss_pred HHHHHHHHHHHHhhccCCeEEeeecCCceeecCcc-chHHHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCce
Confidence 447889999999999999999994 44 78899999998 89999999999999999988 99999999999
Q ss_pred EEEccchHHHhchh--CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 105 VLIPDSAMFGLISR--VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 105 ~~I~dsav~~~m~~--v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
++|+|++++++|++ +|.|++|||.|..||.+.||+|||++|++||+|+|||||++|.+
T Consensus 213 tLItD~aag~~M~~g~Id~viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~s 272 (346)
T COG0182 213 TLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLS 272 (346)
T ss_pred EEEeccHHHHHHHhCCCcEEEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccC
Confidence 99999999999976 99999999999999999999999999999999999999999875
No 18
>KOG1468|consensus
Probab=99.92 E-value=6.8e-25 Score=184.06 Aligned_cols=124 Identities=24% Similarity=0.371 Sum_probs=112.2
Q ss_pred HHHHHHHHhcccC----C--CCEEEEe---------cCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHH-HHHHhhc
Q psy2575 38 SDTAPSQACEHIH----S--NEIILTL---------GYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHEL-AVSLAKS 100 (165)
Q Consensus 38 ~~~Ia~~a~~~I~----~--~~~ILT~---------g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~l-a~~L~~~ 100 (165)
+..|++++.+++. + --+|||| ||+ |.+.+++..++ ++--+||++|+||++||.++ |-+|--.
T Consensus 135 N~~ig~~g~~~Llq~~~~~~kltVlThCNTGSLATagyG-TALGVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhe 213 (354)
T KOG1468|consen 135 NRAIGDNGAKELLQAVKDKGKLTVLTHCNTGSLATAGYG-TALGVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHE 213 (354)
T ss_pred hhhhhHHHHHHHHHhcCCCCceEEEEeecCCchhhcccc-hHHHHHHHHHhcCCcceEEecccccCCcccchhhHHHHhc
Confidence 5668888877662 2 2488998 566 88999999998 88889999999999999888 9999999
Q ss_pred CCceEEEccchHHHhch--hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 101 KIQTVLIPDSAMFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 101 GI~v~~I~dsav~~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
.||.++|+||++.+.|+ ++|.|++|||.|..||.-.||+|||++|.+||+|++||||++|++
T Consensus 214 kiPatLItDS~vA~~m~~~~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~t 277 (354)
T KOG1468|consen 214 KIPATLITDSMVAAAMKNHQVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFT 277 (354)
T ss_pred cCcchhhhhHHHHHHHhcCCCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEecccc
Confidence 99999999999999998 799999999999999999999999999999999999999999986
No 19
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.95 E-value=0.00016 Score=59.62 Aligned_cols=112 Identities=12% Similarity=0.124 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhC-C-ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQH-R-KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM 112 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~-~-~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav 112 (165)
+..+++|++.|+++|++|++|. ++.++|+..++....+. + .+++.++- .+...+..|.+.|+++..+.
T Consensus 4 ~~~K~~IA~~Aa~lI~dg~~Ig-LgsGST~~~l~~~L~~~~~~~~~itvVt-----~S~~~a~~l~~~gi~v~~l~---- 73 (220)
T PRK00702 4 DELKKAAAEAAAEYVEDGMIVG-LGTGSTAAYFIDALGERVKEGLIIGGVP-----TSEASTELAKELGIPLFDLN---- 73 (220)
T ss_pred HHHHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHhhhccCCCEEEEC-----CcHHHHHHHHhCCCeEEcHH----
Confidence 3568899999999999999975 56666888777766542 1 12233331 23456777777898876222
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHHHH--HHHHhhCCCcEEEEe
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTHAV--ALAAQHYSIPYPCTF 159 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~l--Al~Ak~~~vPv~V~~ 159 (165)
-++++|..|.|||.|-++++++-.-|-..+ -++|+..+. +++++
T Consensus 74 --~~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~~-~vil~ 119 (220)
T PRK00702 74 --EVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKR-FICIV 119 (220)
T ss_pred --HCCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcCc-EEEEE
Confidence 245799999999999999888877554433 344444433 34443
No 20
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.89 E-value=0.00031 Score=57.83 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=63.0
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhC-C--ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQH-R--KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFG 114 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~-~--~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~ 114 (165)
++.|++.|+++|++|++|. ++.|+|+..+.....+. + .+.+.++- .+...+..|++.|+++..+ .
T Consensus 2 K~~IA~~A~~~I~~g~~I~-ldsGST~~~~~~~L~~~~~~~~l~itvVt-----~S~~~a~~l~~~gi~v~~l------~ 69 (218)
T TIGR00021 2 KRAAAEAAAEYVEDGMVVG-LGTGSTVAYFIEALGERVKQEGLDIVGVP-----TSKQTAELARELGIPLSSL------D 69 (218)
T ss_pred HHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhhccCCCEEEEe-----CCHHHHHHHHHCCCCEEcH------h
Confidence 5789999999999999976 45566777766655431 1 12333321 2445678888889988522 2
Q ss_pred hchhCCEEEEccceeecCCCeeehhc
Q psy2575 115 LISRVNKIIIGTHTVMANGGLRSVCG 140 (165)
Q Consensus 115 ~m~~v~~VllGAd~V~~nG~vvnk~G 140 (165)
-+.++|..|.|||.|-++++++---|
T Consensus 70 ~~~~iDiafdGaD~id~~~~~ikg~g 95 (218)
T TIGR00021 70 EVPELDLAIDGADEVDPNLQLIKGGG 95 (218)
T ss_pred HCCccCEEEECCCeECCCCCEecccH
Confidence 24579999999999999998853333
No 21
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.86 E-value=0.00024 Score=58.00 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=64.8
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhC-----CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQH-----RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~-----~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav 112 (165)
++.|++.|+++|.+|++|.. +.|+|+..+.....+. ++++|+-. +...+..|.+.|+++..+.
T Consensus 2 K~~IA~~A~~~I~~g~~I~l-dsGST~~~l~~~L~~~~~~~~~~itvVTn-------S~~~a~~l~~~~i~vi~lg---- 69 (213)
T cd01398 2 KRAAARAAVDYVEDGMVIGL-GTGSTVAYFIEALGERVREEGLNIVGVPT-------SFQTEELARELGIPLTDLD---- 69 (213)
T ss_pred HHHHHHHHHHhCCCCCEEEE-CchHHHHHHHHHHHHhhhccCCCEEEEeC-------cHHHHHHHHhCCCeEEeCC----
Confidence 57899999999999998775 5556777776655442 24555421 3345667777788876655
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHHHHH
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVA 145 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lA 145 (165)
--.++|+.|+|||.|-+++.....-|-..+-
T Consensus 70 --~~~~~D~af~Gad~id~~~~~~~~~~~a~~k 100 (213)
T cd01398 70 --EVPRLDLAIDGADEVDPDLNLIKGGGGALLR 100 (213)
T ss_pred --CccccCEEEECCCcCCCCcCcccChHHHHHH
Confidence 2236999999999999887665444544433
No 22
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=97.86 E-value=0.00032 Score=54.68 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhc-CCceEEEccc----
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKS-KIQTVLIPDS---- 110 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~-GI~v~~I~ds---- 110 (165)
..+++|++.|+++|++|++|+.-+.| |+..+.....+.++++|+-- +...+..|.+. ++++.++.-.
T Consensus 4 ~~K~~IA~~A~~~I~~~~~Ifld~Gt-T~~~la~~L~~~~~ltVvTn-------sl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 4 EEKRAIARKAASLIEDGDTIFLDSGT-TTLELAKYLPDKKNLTVVTN-------SLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECch-HHHHHHHHhhcCCceEEEEC-------CHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 45889999999999999998876665 77777776655457776643 45678888886 5555544321
Q ss_pred -------hHHHhch--hCCEEEEccceeecCCCee-ehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 111 -------AMFGLIS--RVNKIIIGTHTVMANGGLR-SVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 111 -------av~~~m~--~v~~VllGAd~V~~nG~vv-nk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
..-..++ ++|+.|+|+++|..++|+. ....-..+-.+.-+....+|+++..
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~ 136 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADS 136 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeCh
Confidence 1112233 4899999999999965555 5555666666666666677777654
No 23
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=97.75 E-value=0.00045 Score=57.68 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh-cC-CceEEEcc----
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK-SK-IQTVLIPD---- 109 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~-~G-I~v~~I~d---- 109 (165)
..++.|+..|+++|.+|++|+.-+.| |+..+.......++++|+.. +...+..|.+ .+ +++.++.-
T Consensus 76 ~~K~~IA~~Aa~~I~~g~tIfld~Gt-T~~~la~~L~~~~~ltVvTn-------sl~ia~~l~~~~~~~~v~l~GG~~~~ 147 (256)
T PRK10434 76 HKKELIAEAAVSLIHDGDSIILDAGS-TVLQMVPLLSRFNNITVMTN-------SLHIVNALSELDNEQTILMPGGTFRK 147 (256)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCcH-HHHHHHHHhccCCCeEEEEC-------CHHHHHHHhhCCCCCEEEEECCEEeC
Confidence 34888999999999999999965555 66666665544345776643 4557888876 33 56654431
Q ss_pred ---chHH----Hhch--hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 110 ---SAMF----GLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 110 ---sav~----~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
+.++ ..++ ++|++|+|++++..++|+....-...+-.++-.....+|+++..+
T Consensus 148 ~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~s 209 (256)
T PRK10434 148 KSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSS 209 (256)
T ss_pred CCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCc
Confidence 1111 1233 489999999999988877653333445555555566677776543
No 24
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=97.57 E-value=0.0012 Score=55.66 Aligned_cols=118 Identities=8% Similarity=0.051 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh-cCCceEEEccc----
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK-SKIQTVLIPDS---- 110 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~-~GI~v~~I~ds---- 110 (165)
..++.|+..|+++|++|++|+.-+.| |+..+.......++++|+.. +...+..|.+ .++++.++.-.
T Consensus 91 ~~K~~IA~~Aa~~I~dgd~Ifld~Gt-T~~~la~~L~~~~~ltVvTn-------sl~ia~~l~~~~~~~v~llGG~~~~~ 162 (269)
T PRK09802 91 AMKRSVAKAAVELIQPGHRVILDSGT-TTFEIARLMRKHTDVIAMTN-------GMNVANALLEAEGVELLMTGGHLRRQ 162 (269)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCch-HHHHHHHhcCcCCCeEEEeC-------CHHHHHHHHhCCCCEEEEECCEEecC
Confidence 44889999999999999999976655 66665555533456777743 4557888875 46776644311
Q ss_pred -------hHHHhch--hCCEEEEccceeecCCCeee-hhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 111 -------AMFGLIS--RVNKIIIGTHTVMANGGLRS-VCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 111 -------av~~~m~--~v~~VllGAd~V~~nG~vvn-k~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
.....+. ++|+.|+|+++|-.++|+.. ..--..+-.++-....-+|+++..
T Consensus 163 ~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~ 223 (269)
T PRK09802 163 SQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDS 223 (269)
T ss_pred CCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEec
Confidence 1112333 49999999999998877654 434455554444444555666554
No 25
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=97.54 E-value=0.0015 Score=54.52 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh-cCCceEEEcc------
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK-SKIQTVLIPD------ 109 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~-~GI~v~~I~d------ 109 (165)
.++.|+..|+++|++|++|+.-+.| |+..+.......++++|+-. +...+..|.+ .++++.++-.
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIflD~Gt-T~~~la~~L~~~~~ltVvTN-------sl~ia~~l~~~~~~~villGG~~~~~~ 148 (252)
T PRK10906 77 EKERIARKVASQIPNGATLFIDIGT-TPEAVAHALLNHSNLRIVTN-------NLNVANTLMAKEDFRIILAGGELRSRD 148 (252)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCcH-HHHHHHHHhcCCCCcEEEEC-------cHHHHHHHhhCCCCEEEEECCEEecCC
Confidence 4788999999999999999976665 66666655544456666632 4556777774 4566654431
Q ss_pred -chHHH----hch--hCCEEEEccceeecCCCee-ehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 110 -SAMFG----LIS--RVNKIIIGTHTVMANGGLR-SVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 110 -sav~~----~m~--~v~~VllGAd~V~~nG~vv-nk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
+.++. .++ ++|+.|+|+++|-.++|+. +...-..+-.++-....-++++|..+
T Consensus 149 ~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~s 209 (252)
T PRK10906 149 GGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHS 209 (252)
T ss_pred CccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccc
Confidence 11111 222 3899999999999876653 44454555555555555667766543
No 26
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=97.33 E-value=0.0031 Score=52.42 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh-cCCceEEEccc-----
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK-SKIQTVLIPDS----- 110 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~-~GI~v~~I~ds----- 110 (165)
.++.|++.|+++|++|++|+.-+.| |+..+.....+.++++|+-. +...+..|.+ .++++.++.-.
T Consensus 78 ~K~~IA~~Aa~lI~~g~tIflD~Gt-T~~~la~~L~~~~~ltvvTn-------sl~i~~~l~~~~~~~villGG~~~~~~ 149 (252)
T PRK10681 78 EKRRAAQLAATLVEPNQTLFFDCGT-TTPWIIEAIDNELPFTAVCY-------SLNTFLALQEKPHCRAILCGGEFHASN 149 (252)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCc-cHHHHHHhcCCCCCeEEEEC-------CHHHHHHHhhCCCCEEEEECcEEecCc
Confidence 3788999999999999999987777 55555554433335666642 4456777775 45665544311
Q ss_pred ------hHHHhch--hCCEEEEccceeecCCCee-ehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 111 ------AMFGLIS--RVNKIIIGTHTVMANGGLR-SVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 111 ------av~~~m~--~v~~VllGAd~V~~nG~vv-nk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
..-..+. ++|+.|+|+++|..++|+. ...--..+-.+.-.....+|+++..
T Consensus 150 ~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~ 209 (252)
T PRK10681 150 AIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDH 209 (252)
T ss_pred ceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcc
Confidence 1111233 4999999999998876654 3444455554444445556666554
No 27
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=97.26 E-value=0.0037 Score=52.04 Aligned_cols=116 Identities=11% Similarity=-0.058 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh-cCCceEEEc-------
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK-SKIQTVLIP------- 108 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~-~GI~v~~I~------- 108 (165)
.++.|+..|+.+|++|++|+.-+.| |+..+...... ++++|+.. +...|..|.+ .++++.++.
T Consensus 79 ~K~~IA~~Aa~~I~~g~~Ifld~Gs-T~~~la~~L~~-~~ltVvTn-------sl~ia~~l~~~~~~~v~l~GG~~~~~~ 149 (251)
T PRK13509 79 EKVRIAKAASQLCNPGESVVINCGS-TAFLLGRELCG-KPVQIITN-------YLPLANYLIDQEHDSVIIMGGQYNKSQ 149 (251)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcH-HHHHHHHHhCC-CCeEEEeC-------CHHHHHHHHhCCCCEEEEECCeEcCCc
Confidence 4788999999999999999876655 66655554432 35666533 4457777775 345554332
Q ss_pred ----cchHHHhchh--CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 109 ----DSAMFGLISR--VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 109 ----dsav~~~m~~--v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
... ...+.+ +|+.|+|+++|-.+|-.........+-.++-....-+|+++.++
T Consensus 150 ~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDss 208 (251)
T PRK13509 150 SITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSS 208 (251)
T ss_pred ceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEccc
Confidence 111 134443 89999999999877543344444444444444455566666543
No 28
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=97.06 E-value=0.0092 Score=49.44 Aligned_cols=117 Identities=11% Similarity=0.085 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh-cCCceEEEcc-----
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK-SKIQTVLIPD----- 109 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~-~GI~v~~I~d----- 109 (165)
..++.|+..|+++|++|++|+.-+.| |+..+...... ++++|+.. +...+..|.. .++++.++-.
T Consensus 78 ~~K~~IA~~Aa~lI~~gd~Ifld~Gt-T~~~l~~~L~~-~~ltVvTN-------s~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 78 AHKADIAREALAWIEEGMVIALDASS-TCWYLARQLPD-INIQVFTN-------SHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCcH-HHHHHHHhhCC-CCeEEEeC-------CHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 34788999999999999999866555 66655554433 35666643 4456777774 4566543321
Q ss_pred ------chHHHhch--hCCEEEEccceeecCCCeeeh-hcHHHHHHHHhhCCCcEEEEeec
Q psy2575 110 ------SAMFGLIS--RVNKIIIGTHTVMANGGLRSV-CGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 110 ------sav~~~m~--~v~~VllGAd~V~~nG~vvnk-~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
......++ ++|++|+|+++|..++|+... .=...+-..+-....-+|+++..
T Consensus 149 ~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~ 209 (240)
T PRK10411 149 YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDK 209 (240)
T ss_pred CCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEec
Confidence 11112233 489999999999887776643 33344444444444445555544
No 29
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.033 Score=46.44 Aligned_cols=115 Identities=14% Similarity=0.152 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcC-CceEEE--------
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSK-IQTVLI-------- 107 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~G-I~v~~I-------- 107 (165)
.+..|++.|+++|++|++|+.-+.| |...+.......++++|+.- +...+..|.... +.+.++
T Consensus 77 eK~~IA~~Aa~lI~~g~~ifld~GT-T~~~la~~L~~~~~ltviTN-------sl~ia~~l~~~~~~~vi~~GG~~~~~~ 148 (253)
T COG1349 77 EKRAIAKAAATLIEDGDTIFLDAGT-TTLALARALPDDNNLTVITN-------SLNIAAALLEKPNIEVILLGGTVRKKS 148 (253)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCc-HHHHHHHHhCcCCCeEEEeC-------CHHHHHHHHhCCCCeEEEeCcEEEcCC
Confidence 4888999999999999999987766 55555554443344777643 556788888754 433211
Q ss_pred ---ccchHHHhch--hCCEEEEccceeecCCCeeehh-cHHHHHHHHhhCCCcEEEEe
Q psy2575 108 ---PDSAMFGLIS--RVNKIIIGTHTVMANGGLRSVC-GTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 108 ---~dsav~~~m~--~v~~VllGAd~V~~nG~vvnk~-GT~~lAl~Ak~~~vPv~V~~ 159 (165)
........++ ++|++|+|++++-.++|+...- .-..+...+-....-+|+++
T Consensus 149 ~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~ 206 (253)
T COG1349 149 GSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLA 206 (253)
T ss_pred CeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEE
Confidence 1111222333 4899999999999988777654 33333333333333344443
No 30
>PLN02384 ribose-5-phosphate isomerase
Probab=96.46 E-value=0.063 Score=45.56 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-C--CceE-EEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-H--RKFQ-CIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~--~~f~-ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
+..++..+..|.+++++|.+ +-.|..+|+..++....+ . ..++ +.++-++ .+.+..+++.|||+.-+.+
T Consensus 33 ~~~K~~aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS-----~~T~~~a~~~GIpl~~l~~- 105 (264)
T PLN02384 33 DELKKIAAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS-----KKTHEQAVSLGIPLSDLDS- 105 (264)
T ss_pred HHHHHHHHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcCc-----HHHHHHHHHcCCcEecccc-
Confidence 34677889999999999987 556778899988876665 1 2233 5544332 3466777789999776654
Q ss_pred hHHHhchhCCEEEEccceeecCCCeeehhcHH
Q psy2575 111 AMFGLISRVNKIIIGTHTVMANGGLRSVCGTH 142 (165)
Q Consensus 111 av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~ 142 (165)
.++.|..|=|||-|-+|+.++--=|..
T Consensus 106 -----v~~iDiaiDGADEId~~lnlIKGGGga 132 (264)
T PLN02384 106 -----HPVVDLAIDGADEVDPNLNLVKGRGGS 132 (264)
T ss_pred -----CCcccEEEECCceeCCCCCEEEeCcHH
Confidence 568999999999999998877666643
No 31
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=96.40 E-value=0.073 Score=44.26 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh---CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ---HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM 112 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~---~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav 112 (165)
..++..+..|++++++|.+ +-.|..+|+..|+....+ ...+++.++-++ .+.+..+.+.|||+.-+.+
T Consensus 6 ~~K~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS-----~~t~~~a~~~Gipl~~l~~--- 76 (228)
T PRK13978 6 ALKLMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCTS-----NKIAFLAKELGIKICEIND--- 76 (228)
T ss_pred HHHHHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeCc-----HHHHHHHHHcCCcEechhh---
Confidence 3577788999999999987 567778899988876665 223556655333 3455666778999766554
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHH
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTH 142 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~ 142 (165)
.++.|..|=|||-|-+|+.++--=|..
T Consensus 77 ---~~~iDiaiDGADevd~~lnlIKGgGga 103 (228)
T PRK13978 77 ---VDHIDLAIDGADEVDPSLNIIKGGGGA 103 (228)
T ss_pred ---CCceeEEEecCceecCCccEEecCcHH
Confidence 367999999999999998877655543
No 32
>KOG0259|consensus
Probab=95.04 E-value=0.36 Score=43.33 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh-cCCceEE---
Q psy2575 35 NPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK-SKIQTVL--- 106 (165)
Q Consensus 35 ~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~-~GI~v~~--- 106 (165)
-.+|+.++++..+ .+..+|++||-|.|+.++-.+...++ +.-.+.+ -||++- +-..++. .|+.|.+
T Consensus 106 ~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~-p~aNILl--PrPGfp---~Y~~~a~~~~lEVR~ydl 179 (447)
T KOG0259|consen 106 LPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLAN-PGANILL--PRPGFP---LYDTRAIYSGLEVRYYDL 179 (447)
T ss_pred HHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcC-CCCceec--CCCCCc---hHHHhhhhcCceeEeecc
Confidence 4669999998544 56779999999999999888876664 4444444 467654 3233333 4666654
Q ss_pred -------EccchHHHhchh--CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 107 -------IPDSAMFGLISR--VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 107 -------I~dsav~~~m~~--v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
|....+-++.-+ +-++++-.. -+.|+++.+-=--.+|..|+++++||+.
T Consensus 180 LPe~~weIDL~~veal~DENT~AivviNP~--NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 180 LPEKDWEIDLDGVEALADENTVAIVVINPN--NPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred cCcccceechHHHHHhhccCeeEEEEeCCC--CCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 334455555544 334444433 4789999999999999999999999873
No 33
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=95.02 E-value=0.19 Score=41.84 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh--CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHH
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMF 113 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~ 113 (165)
..++..+..|++++.+|.+ +-.|..+|+..|+....+ ...+.+..+-|+ .+.+..+++.||++.-+.+
T Consensus 5 ~~K~~aa~~A~~~v~~gmv-iGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS-----~~t~~l~~~~GI~v~~l~~---- 74 (227)
T COG0120 5 ELKKAAAKAALEYVKDGMV-IGLGTGSTAAYFIEALGRRVKGELDIGGVPTS-----FQTEELARELGIPVSSLNE---- 74 (227)
T ss_pred HHHHHHHHHHHHHhcCCCE-EEEcCcHHHHHHHHHHHHhhccCccEEEEeCC-----HHHHHHHHHcCCeecCccc----
Confidence 4577788899999999655 456777799999998863 222555544333 4567788889999877766
Q ss_pred HhchhCCEEEEccceeecCCCeeehhcHHH
Q psy2575 114 GLISRVNKIIIGTHTVMANGGLRSVCGTHA 143 (165)
Q Consensus 114 ~~m~~v~~VllGAd~V~~nG~vvnk~GT~~ 143 (165)
.++.|..+=|||-|-+++.++--=|...
T Consensus 75 --~~~lDl~iDGADEvd~~~~lIKGGGgAl 102 (227)
T COG0120 75 --VDSLDLAIDGADEVDPNLNLIKGGGGAL 102 (227)
T ss_pred --cCccceEeecccccCCCCCEEccChHHH
Confidence 5669999999999999988877666654
No 34
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.49 E-value=0.39 Score=34.17 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=62.3
Q ss_pred EEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHH----hchhCCEEEEccceee
Q psy2575 55 ILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFG----LISRVNKIIIGTHTVM 130 (165)
Q Consensus 55 ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~----~m~~v~~VllGAd~V~ 130 (165)
|+..|+++.-..++....+ ...+|+++|..|. .++.+++.|+++.+..-..... -+.+++.+++..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~-----~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~--- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE-----RVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD--- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH-----HHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS---
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH-----HHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC---
Confidence 5788999887877777776 5578888888765 5888899998876644332222 2345777777765
Q ss_pred cCCCeeehhcHHHHHHHHhh-CC-CcEEEEe
Q psy2575 131 ANGGLRSVCGTHAVALAAQH-YS-IPYPCTF 159 (165)
Q Consensus 131 ~nG~vvnk~GT~~lAl~Ak~-~~-vPv~V~~ 159 (165)
+..-+..+++.||. ++ +++++.+
T Consensus 72 ------~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 72 ------DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp ------SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ------CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 67888899999998 44 4555544
No 35
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.09 E-value=1.8 Score=30.54 Aligned_cols=60 Identities=23% Similarity=0.187 Sum_probs=42.8
Q ss_pred HHHHHhhcCCceEEE------ccch--HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 93 LAVSLAKSKIQTVLI------PDSA--MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 93 la~~L~~~GI~v~~I------~dsa--v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+-+.+.+.|...... .... +...++++|.||+=.|.|-.+ -+..+--.||.+++|++.+-
T Consensus 15 ~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~-------~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 15 YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHN-------AMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChH-------HHHHHHHHHHHcCCcEEEEC
Confidence 445555566666555 4444 666788899999988766554 56667788999999999764
No 36
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.63 E-value=2.9 Score=37.33 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=47.7
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
.+..|+++|.+.+=......++ .+.++|.+.|.++......+.+.|.+.|+++..-.... ....+|.|++++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~-~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALL-ELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 4668899888765554433332 35578999998876555567788999998875433222 334578888776
No 37
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.24 E-value=3.5 Score=36.36 Aligned_cols=93 Identities=12% Similarity=0.106 Sum_probs=53.9
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVM 130 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~ 130 (165)
.+.+|++.|.+..=.. +.....++..+|.+.|..+...=.+...+|.+.|+.+ +........+.++|.|+.++..-
T Consensus 4 ~~k~v~iiG~g~~G~~-~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~d~vv~~~g~~- 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLA-LAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIEL--VLGEYPEEFLEGVDLVVVSPGVP- 79 (450)
T ss_pred CCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEE--EeCCcchhHhhcCCEEEECCCCC-
Confidence 4678888898873332 2222224567888887765332233456777778763 33222234556788888877432
Q ss_pred cCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 131 ANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 131 ~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
.+ .+....|++.++|++
T Consensus 80 ~~---------~~~~~~a~~~~i~~~ 96 (450)
T PRK14106 80 LD---------SPPVVQAHKKGIEVI 96 (450)
T ss_pred CC---------CHHHHHHHHCCCcEE
Confidence 22 235566666666665
No 38
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.08 E-value=8.1 Score=33.91 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=44.2
Q ss_pred hcccCCCCEEEEecCCHHHHHHHHHHHh--CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc
Q psy2575 46 CEHIHSNEIILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 46 ~~~I~~~~~ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ 108 (165)
...|+.||+++..+....+..+.....+ ...-+++|+-. +.-|+.+++.|.+.|.+++++.
T Consensus 199 ~~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 199 DTVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred CcEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEE
Confidence 3456778999998888877776654443 23456777755 4567889999999999988884
No 39
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=87.70 E-value=4.4 Score=33.81 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=48.6
Q ss_pred EEecCCHHHHHHHHHHHh--CCc-eE--EEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceee
Q psy2575 56 LTLGYSKIVELFLKNAAQ--HRK-FQ--CIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVM 130 (165)
Q Consensus 56 LT~g~S~tV~~~L~~A~~--~~~-f~--ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~ 130 (165)
++.-|++.+.+.+..+.+ +-+ ++ ||+.-+-|.+|.+.=.+.|++. |||+|-
T Consensus 127 ~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~~------------------------Gad~Vg 182 (245)
T PRK09136 127 FTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLERD------------------------GCDLVG 182 (245)
T ss_pred CcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHHc------------------------CCCEEc
Confidence 345567777776666655 322 22 7777778887765555554333 666665
Q ss_pred cCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 131 ANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 131 ~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
-. +.+.+.+|++.++||.+++-
T Consensus 183 Ms--------~~pEa~~A~~~gi~~~~i~~ 204 (245)
T PRK09136 183 MT--------GMPEAALARELGLPYACLAL 204 (245)
T ss_pred Cc--------HHHHHHHHHHcCCCEEEEEE
Confidence 44 67889999999999998753
No 40
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.56 E-value=7.1 Score=34.90 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=56.1
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeec
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMA 131 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~ 131 (165)
+..|+.+|...+=...... ..++..+|.+.|.+|...=..+...|.+.|+.+..-.+. ...+.+.|.|++++-. -.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~-L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Spgi-~~ 89 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKF-LVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTPSM-RI 89 (458)
T ss_pred CCeEEEEcccHHHHHHHHH-HHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECCCC-CC
Confidence 5678888887654432222 223557899999876533223345588889877654332 2335778988887533 22
Q ss_pred CCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 132 NGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 132 nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
+ .+....|++.++|++
T Consensus 90 ~---------~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 90 D---------SPELVKAKEEGAYIT 105 (458)
T ss_pred C---------chHHHHHHHcCCcEE
Confidence 2 345666667777765
No 41
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=87.24 E-value=2.1 Score=35.91 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=63.0
Q ss_pred cCCHHH-HHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCC----ceEEEccchHHHhchhCCEEEEccceeecC
Q psy2575 59 GYSKIV-ELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKI----QTVLIPDSAMFGLISRVNKIIIGTHTVMAN 132 (165)
Q Consensus 59 g~S~tV-~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI----~v~~I~dsav~~~m~~v~~VllGAd~V~~n 132 (165)
|.|-.+ ..++....+ +...+|.+.+-+|... ..+.+...++ ..-+....++..+|+.||.||--|..+...
T Consensus 4 GgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~---~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~ 80 (280)
T PF01073_consen 4 GGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPK---FLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW 80 (280)
T ss_pred cCCcHHHHHHHHHHHHCCCceEEEEcccccccc---cchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence 444333 333333333 3336677776555432 2223333332 334444567778899999998887766665
Q ss_pred C-------CeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 133 G-------GLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 133 G-------~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
| --+|--||..+.-+|++++|+-+|.+.+
T Consensus 81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS 116 (280)
T PF01073_consen 81 GDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSS 116 (280)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5 2346799999999999999999887764
No 42
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=86.92 E-value=3.2 Score=31.55 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=42.2
Q ss_pred EecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 81 VMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 81 V~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
-.+..|++.|...|..|++.|.++.++. +|.++++ |.....--...++..|+++++|+++
T Consensus 30 ~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i~-------~~~~~~~~~~~~~~~~~~~~~~v~~ 89 (196)
T cd00287 30 DTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVIS-------GLSPAPEAVLDALEEARRRGVPVVL 89 (196)
T ss_pred eeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEEe-------cccCcHHHHHHHHHHHHHcCCeEEE
Confidence 3356778889999999999999999988 4444444 3322212344566678888999765
No 43
>PRK05839 hypothetical protein; Provisional
Probab=86.78 E-value=13 Score=31.91 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhcc----cCCCCEEEEecCCHHHHHHHHHHH-hCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 35 NPTSDTAPSQACEH----IHSNEIILTLGYSKIVELFLKNAA-QHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~~~~~ILT~g~S~tV~~~L~~A~-~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
...++.|+++..+. +...++++|.|.+..+..++.... .+..-+|++ + .|.+.+...+ +...|+++..++.
T Consensus 63 ~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv-~-~P~y~~~~~~--~~~~g~~v~~v~~ 138 (374)
T PRK05839 63 ESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAY-P-NPFYQIYEGA--AIASRAKVLLMPL 138 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEE-C-CCCchhhHHH--HHhcCCEEEEeec
Confidence 57788888776443 566778888887765544433221 122334443 3 4666554433 3567888877765
Q ss_pred chH-HH-------hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 SAM-FG-------LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 sav-~~-------~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..- .+ ..+++..+++- .-=-+.|.++.+.=-..++-.|+++++++++
T Consensus 139 ~~~~~~~~d~~~~~~~~~k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 139 TKENDFTPSLNEKELQEVDLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred ccccCCcCCcchhhhccccEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 321 11 12344444442 1122335555555556777888999988874
No 44
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=86.32 E-value=6.9 Score=31.00 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=57.2
Q ss_pred EEEecCCHHH-HHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc---chHHHhchhCCEEEEccceee
Q psy2575 55 ILTLGYSKIV-ELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD---SAMFGLISRVNKIIIGTHTVM 130 (165)
Q Consensus 55 ILT~g~S~tV-~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d---sav~~~m~~v~~VllGAd~V~ 130 (165)
|+++|-+..+ ..++....+ +.++|.++=..| -...+..|.+.|+.+..... .++...++.+|.|++-.....
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 5566654333 223332222 556666553333 34568889999987664443 456667787777765433221
Q ss_pred cCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 131 ANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 131 ~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
-...-....++-+|++.+|+.+|..++
T Consensus 77 ----~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 77 ----PSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp ----CCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred ----hhhhhhhhhHHHhhhccccceEEEEEe
Confidence 222344567888999999999986554
No 45
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=86.21 E-value=1.3 Score=35.32 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCceEEEccchHHH-hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 92 ELAVSLAKSKIQTVLIPDSAMFG-LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~dsav~~-~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+|..|++.|++|.+-+..++.. -+.+.|.|++||..-. |..=...+++.=.-...-...|+=+.
T Consensus 20 ~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~A~f 85 (175)
T COG4635 20 YIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPSAFF 85 (175)
T ss_pred HHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 45788889999999999999987 6788999999996533 23444455555444444455665443
No 46
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=85.46 E-value=21 Score=30.13 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=57.4
Q ss_pred HHHHHHhcccC--CCCEEEEecCCHHHHHHHHHHHh---CCc-eEEEEecCCCCChHHHHHHHHhhcCCceEEEccc---
Q psy2575 40 TAPSQACEHIH--SNEIILTLGYSKIVELFLKNAAQ---HRK-FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS--- 110 (165)
Q Consensus 40 ~Ia~~a~~~I~--~~~~ILT~g~S~tV~~~L~~A~~---~~~-f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds--- 110 (165)
.+.+..++++. ..++++|-|.+..+...+..... ++. -+|++.+..... -......+...|+++..++..
T Consensus 46 ~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s-~~~~~~~~~~~G~~v~~v~~~~~~ 124 (353)
T TIGR03235 46 RARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPA-VLEPIRALERNGFTVTYLPVDESG 124 (353)
T ss_pred HHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHH-HHHHHHHHHhcCCEEEEEccCCCC
Confidence 33343444553 34566666555455545543332 122 456655332211 112234456679998888632
Q ss_pred -----hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 111 -----AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 111 -----av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+...+..-.++++-...-.+.|.+ .. -..|+-+|++++++++|=
T Consensus 125 ~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~-~~--~~~I~~l~~~~~~~~ivD 174 (353)
T TIGR03235 125 RIDVDELADAIRPDTLLVSIMHVNNETGSI-QP--IREIAEVLEAHEAFFHVD 174 (353)
T ss_pred cCCHHHHHHhCCCCCEEEEEEcccCCceec-cC--HHHHHHHHHHcCCEEEEE
Confidence 2323332222333322232344433 33 266888999999999873
No 47
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=85.06 E-value=5 Score=28.58 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=35.8
Q ss_pred EEEEecCCHHHHHHHHHHHh--CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc
Q psy2575 54 IILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ 108 (165)
+|-||.....+.+.|.+..+ ...++|+|++..+..+....++++.+.+.+++++.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~ 59 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIR 59 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccccccccccc
Confidence 34556666677777776665 46788888887776666677777766556666655
No 48
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.94 E-value=12 Score=30.11 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=57.4
Q ss_pred CCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcccee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTV 129 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V 129 (165)
.|..|+++|.+.....-+....+ +. +|.|+...+. .-...|.+.| +++++...--...+..++.|+...+--
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga--~VtVvsp~~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA--QLRVIAEELE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC--EEEEEcCCCC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 46789999999776654544444 44 4555544433 1233455666 677776443344566677777654321
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
- + ...++..|+..++||.++.
T Consensus 81 ~-----l----n~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 81 E-----L----NRRVAHAARARGVPVNVVD 101 (205)
T ss_pred H-----H----HHHHHHHHHHcCCEEEECC
Confidence 1 2 2478899999999998764
No 49
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=84.61 E-value=16 Score=30.87 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc-hHH
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS-AMF 113 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds-av~ 113 (165)
...++.++++-- +....+++|.|.+..+.. +..+.. .. +|++. .|.+.+.. ..+...|+++..++|. .+.
T Consensus 50 ~~lr~~la~~~~--~~~~~i~~t~G~~~~i~~-~~~~l~-~g-~vl~~--~p~y~~~~--~~~~~~g~~~~~~~d~~~l~ 120 (330)
T TIGR01140 50 DELRAAAAAYYG--LPAASVLPVNGAQEAIYL-LPRLLA-PG-RVLVL--APTYSEYA--RAWRAAGHEVVELPDLDRLP 120 (330)
T ss_pred HHHHHHHHHHhC--CChhhEEECCCHHHHHHH-HHHHhC-CC-eEEEe--CCCcHHHH--HHHHHcCCEEEEeCCHHHHH
Confidence 455777776431 344567777665544433 444443 33 55554 57776543 3466789999988842 233
Q ss_pred HhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 114 GLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 114 ~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..+++.+.+++ ...-.+-|.+....--..++-.|+.+++++++
T Consensus 121 ~~~~~~~~v~i-~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 121 AALEELDVLVL-CNPNNPTGRLIPPETLLALAARLRARGGWLVV 163 (330)
T ss_pred hhcccCCEEEE-eCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEE
Confidence 44556665555 32334667777766677788888999998875
No 50
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=84.57 E-value=12 Score=26.61 Aligned_cols=90 Identities=17% Similarity=0.261 Sum_probs=56.1
Q ss_pred CEEEEecCCHHHHHHHHHHHh--CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc-----chHHHhch--hCCEEE
Q psy2575 53 EIILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD-----SAMFGLIS--RVNKII 123 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d-----sav~~~m~--~v~~Vl 123 (165)
.++++.+.+.- ..++.-+++ ...|+++.++ ..++.|.+.|++|+.+.. ..+...++ ++|.|+
T Consensus 2 ~vl~s~~~~~k-~~~~~~~~~l~~~G~~l~aT~--------gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vI 72 (110)
T cd01424 2 TVFISVADRDK-PEAVEIAKRLAELGFKLVATE--------GTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVI 72 (110)
T ss_pred eEEEEEEcCcH-hHHHHHHHHHHHCCCEEEEch--------HHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEE
Confidence 35566654432 233333333 4679998764 378889999999776532 33444443 488887
Q ss_pred EccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 124 IGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 124 lGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
--.+ +.- ...-.+.+=.+|-.++||++-
T Consensus 73 n~~~-----~~~-~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 73 NTPS-----GKR-AIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred ECCC-----CCc-cCccHHHHHHHHHHhCCCEEe
Confidence 7543 111 233457899999999999973
No 51
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=84.31 E-value=24 Score=29.82 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=52.2
Q ss_pred CEEEEecCCHH-----HHHHHHHHHh-----CCceEEEEecCCCCChHHHHHHHHhhc-CCceEEEccchHHHhchhCCE
Q psy2575 53 EIILTLGYSKI-----VELFLKNAAQ-----HRKFQCIVMENSPENKGHELAVSLAKS-KIQTVLIPDSAMFGLISRVNK 121 (165)
Q Consensus 53 ~~ILT~g~S~t-----V~~~L~~A~~-----~~~f~ViV~Es~P~~eG~~la~~L~~~-GI~v~~I~dsav~~~m~~v~~ 121 (165)
.+|+.++.|+- ....+..+.+ ..++++++.-..|. .-..+.+.+.+. |+++.++. ..+..++..+|.
T Consensus 187 ~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl 264 (380)
T PRK00025 187 RVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK-RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA 264 (380)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh-hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE
Confidence 45677766642 1223333322 23566666532222 122344445556 78876654 468888999999
Q ss_pred EEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 122 IIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 122 VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+++.+ |+..+ =|-..++|+++.
T Consensus 265 ~v~~s-------------G~~~l--Ea~a~G~PvI~~ 286 (380)
T PRK00025 265 ALAAS-------------GTVTL--ELALLKVPMVVG 286 (380)
T ss_pred EEECc-------------cHHHH--HHHHhCCCEEEE
Confidence 99843 55554 456789999876
No 52
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=84.29 E-value=13 Score=26.80 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHHhccc--CCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHH-------
Q psy2575 43 SQACEHI--HSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMF------- 113 (165)
Q Consensus 43 ~~a~~~I--~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~------- 113 (165)
+..++++ .....+++.|.+..+...+..+.+ .+.+|++.+.. +.|... ..+...|.++..++...-.
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~-~~~~v~~~~~~--~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~ 82 (170)
T cd01494 7 EKLARLLQPGNDKAVFVPSGTGANEAALLALLG-PGDEVIVDANG--HGSRYW-VAAELAGAKPVPVPVDDAGYGGLDVA 82 (170)
T ss_pred HHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC-CCCEEEEeecc--cceehh-hHHHhcCCEEEEeccCCCCccchhhh
Confidence 3344555 556677777777666666665543 34466666532 222221 3445567777766532111
Q ss_pred ---Hhc--hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 114 ---GLI--SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 114 ---~~m--~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
... ++...+++. ....+++..... -.++-+|+.+++++++=
T Consensus 83 ~~~~~~~~~~~~~v~~~--~~~~~~g~~~~~--~~l~~~~~~~~~~li~D 128 (170)
T cd01494 83 ILEELKAKPNVALIVIT--PNTTSGGVLVPL--KEIRKIAKEYGILLLVD 128 (170)
T ss_pred hhhhccccCceEEEEEe--cCcCCCCeEcCH--HHHHHHHHHcCCEEEEe
Confidence 111 122233222 223334444433 67888899999988863
No 53
>PRK07582 cystathionine gamma-lyase; Validated
Probab=84.09 E-value=17 Score=31.52 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=60.7
Q ss_pred HHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHHHH-HHhhcCCceEEEccchHH-Hhc
Q psy2575 40 TAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HELAV-SLAKSKIQTVLIPDSAMF-GLI 116 (165)
Q Consensus 40 ~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~la~-~L~~~GI~v~~I~dsav~-~~m 116 (165)
...+.-+++. ..+.|++-+.+..+...+.... ++.-+|++.+ |.+.+ ..+++ .+...|+++.+++...-. ...
T Consensus 55 ~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all-~~Gd~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~ 130 (366)
T PRK07582 55 ALEAALGELE-GAEALVFPSGMAAITAVLRALL-RPGDTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAAL 130 (366)
T ss_pred HHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhc-CCCCEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhc
Confidence 3333333444 4567776555554444444332 3445777764 54433 34443 467789999998854322 344
Q ss_pred hhCCEEEEccceee-cCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 117 SRVNKIIIGTHTVM-ANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 117 ~~v~~VllGAd~V~-~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
++...|++. ... +.|.+ .--..++-+|++++++++|
T Consensus 131 ~~t~lV~le--~p~NPtg~v---~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 131 AGADLVLAE--TPSNPGLDV---CDLAALAAAAHAAGALLVV 167 (366)
T ss_pred cCceEEEEE--CCCCCCCCc---cCHHHHHHHHHHcCCEEEE
Confidence 566666653 211 11212 1245788889999988876
No 54
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=84.02 E-value=17 Score=30.95 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcc-----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 35 NPTSDTAPSQACEH-----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~-----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
...++.++++-.++ +...++++|.|.+..+..++....-+..-+|++. .|.+.+.... +...|.++..++|
T Consensus 59 ~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~--~p~y~~~~~~--~~~~g~~~~~v~~ 134 (357)
T TIGR03539 59 PELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIP--ELAYPTYEVG--ALLAGATPVAADD 134 (357)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEEC--CCCcHHHHHH--HHhcCCEEeccCC
Confidence 46688888876443 6667888888888776655443312233355553 6776665543 3456777777654
Q ss_pred chHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 SAMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 sav~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
- ..+- .+...+++- .---+.|.++...=-..++-.|+++++++++
T Consensus 135 ~--~~l~~~~~~~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (357)
T TIGR03539 135 P--TELDPVGPDLIWLN-SPGNPTGRVLSVDELRAIVAWARERGAVVAS 180 (357)
T ss_pred h--hhcCccCccEEEEe-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 1 1111 122233332 1112223333322234578889999988874
No 55
>PLN02651 cysteine desulfurase
Probab=83.47 E-value=24 Score=30.05 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=60.1
Q ss_pred HHHHHHHHhcccC--CCCEEEEecCCHHHHHHHHHHHh---CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc--
Q psy2575 38 SDTAPSQACEHIH--SNEIILTLGYSKIVELFLKNAAQ---HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS-- 110 (165)
Q Consensus 38 ~~~Ia~~a~~~I~--~~~~ILT~g~S~tV~~~L~~A~~---~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds-- 110 (165)
.++..+..++++. +.++++|-|.|..+...+..+.. ++.-+|++.+.....-. .....+...|+++..++-.
T Consensus 45 ~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~-~~~~~~~~~g~~v~~v~~~~~ 123 (364)
T PLN02651 45 VEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVL-DSCRHLQQEGFEVTYLPVKSD 123 (364)
T ss_pred HHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHH-HHHHHHHhcCCEEEEEccCCC
Confidence 3334444445554 34677776655554444443322 33457777543322111 1234456789988887532
Q ss_pred ------hHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 111 ------AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 111 ------av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.+...+. +...|++ ...-...| .+..+ ..|+-+||+++++++|=+
T Consensus 124 ~~~d~~~l~~~i~~~t~lv~v-~~~~n~tG-~~~~l--~~I~~~~~~~g~~~~vD~ 175 (364)
T PLN02651 124 GLVDLDELAAAIRPDTALVSV-MAVNNEIG-VIQPV--EEIGELCREKKVLFHTDA 175 (364)
T ss_pred CcCCHHHHHHhcCCCcEEEEE-ECCCCCce-ecccH--HHHHHHHHHcCCEEEEEc
Confidence 2333443 2333333 22223344 33332 368889999999988743
No 56
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=83.27 E-value=6.8 Score=33.94 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=47.5
Q ss_pred hHHHHHHHHhhcCCceEEEccchH--------HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhh----CCCcEE
Q psy2575 89 KGHELAVSLAKSKIQTVLIPDSAM--------FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQH----YSIPYP 156 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~dsav--------~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~----~~vPv~ 156 (165)
+..+.++.|++.||++++|....+ ....++..++++ ++++....-.|+...+.++.+ ...|+.
T Consensus 215 ~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~-----vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~ 289 (327)
T CHL00144 215 HVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLI-----VEECMKTGGIGAELIAQINEHLFDELDAPIV 289 (327)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEE-----EECCCCCCCHHHHHHHHHHHhchhhcCCCeE
Confidence 445567788888988888865544 233445555554 566777777899999998888 467888
Q ss_pred EEeec
Q psy2575 157 CTFLL 161 (165)
Q Consensus 157 V~~~~ 161 (165)
-++--
T Consensus 290 rl~~~ 294 (327)
T CHL00144 290 RLSSQ 294 (327)
T ss_pred EEccC
Confidence 77543
No 57
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=82.91 E-value=22 Score=30.99 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHhc----------ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCc
Q psy2575 34 ANPTSDTAPSQACE----------HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQ 103 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~----------~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~ 103 (165)
....++.|+++-.+ .+....+++|.|.+..+..++.... +..-+|++. .|.+.+. ...+...|++
T Consensus 77 ~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~--~P~y~~~--~~~~~~~g~~ 151 (412)
T PTZ00433 77 SPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC-DEGDNILVP--APGFPHY--ETVCKAYGIE 151 (412)
T ss_pred cHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc-CCCCEEEEc--cCCcccH--HHHHHHcCCE
Confidence 36778999987653 2566788888887766655554332 333455555 3555443 3345667888
Q ss_pred eEEEccc----------hHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 104 TVLIPDS----------AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 104 v~~I~ds----------av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+..++.. .+...++ +...+++ +.-=-+.|.++.+.=-..++-.|+++++++++
T Consensus 152 ~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~-~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 152 MRFYNCRPEKDWEADLDEIRRLVDDRTKALIM-TNPSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred EEEEecCccccCcCCHHHHHHHhccCceEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 8777632 1222222 3333433 21112334444444456677788899988764
No 58
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=82.59 E-value=3.6 Score=34.25 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcccCCCCEEEE-ecCCHHHHHHHHHHHh---CCceEEEEecCCCCChHHHHHHHHhhcCCceEE-----
Q psy2575 36 PTSDTAPSQACEHIHSNEIILT-LGYSKIVELFLKNAAQ---HRKFQCIVMENSPENKGHELAVSLAKSKIQTVL----- 106 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT-~g~S~tV~~~L~~A~~---~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~----- 106 (165)
+.++.|+.++++.++||+.|-. +|-=+.|..++.+-.+ ...--++-....|.. |+.-+.-+..-+-+++.
T Consensus 6 ~~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~~~~~~~~seng~Lg~g~~p~~-~~~d~~linaG~~~vt~~pg~~ 84 (225)
T COG2057 6 TEREMIAKRAARELKDGDYVNLGIGLPTLVANYAPEGMNVLLQSENGLLGVGPAPLP-GEEDADLINAGKQPVTALPGAS 84 (225)
T ss_pred hhHHHHHHHHHHhccCCCEEEecCCchHHhHhhcccccceEEecCceeEEecCCCCC-CCCCcchhhCCCceeEecCCce
Confidence 6799999999999999997765 6765566666552111 000112223333332 12222223334466776
Q ss_pred EccchHHHhc---hhCCEEEEccceeecCCCeeehh
Q psy2575 107 IPDSAMFGLI---SRVNKIIIGTHTVMANGGLRSVC 139 (165)
Q Consensus 107 I~dsav~~~m---~~v~~VllGAd~V~~nG~vvnk~ 139 (165)
..|++.+..| .++|..++||--|-++|.+-|-.
T Consensus 85 ~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~ 120 (225)
T COG2057 85 VFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWM 120 (225)
T ss_pred EEchHHHHHHHhCCceEEEEecceeecccCceeeee
Confidence 5567776666 35999999999999999998753
No 59
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=82.40 E-value=28 Score=29.18 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=59.4
Q ss_pred HHHHHHHHhcccC--CCCEEEEecC-CHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc----
Q psy2575 38 SDTAPSQACEHIH--SNEIILTLGY-SKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS---- 110 (165)
Q Consensus 38 ~~~Ia~~a~~~I~--~~~~ILT~g~-S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds---- 110 (165)
.+++.+...+++. +...++..+. +..+..++. +.-++.-+|++.+ |..-+..+...+...|.++..++..
T Consensus 34 ~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~-~~~~~g~~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 110 (356)
T cd06451 34 MDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALS-NLLEPGDKVLVGV--NGVFGDRWADMAERYGADVDVVEKPWGEA 110 (356)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHH-HhCCCCCEEEEec--CCchhHHHHHHHHHhCCCeEEeecCCCCC
Confidence 4445455555654 2344444444 444333443 3323445677664 3222333445566678888777521
Q ss_pred ----hHHHhch--hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 111 ----AMFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 111 ----av~~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+...+. +...|++ +..-.+.|.+.. --.++.+|+++++|+++=
T Consensus 111 ~~~~~l~~~i~~~~~~~v~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D 160 (356)
T cd06451 111 VSPEEIAEALEQHDIKAVTL-THNETSTGVLNP---LEGIGALAKKHDALLIVD 160 (356)
T ss_pred CCHHHHHHHHhccCCCEEEE-eccCCCcccccC---HHHHHHHHHhcCCEEEEe
Confidence 2333332 3444544 333345554432 334788889999999873
No 60
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=82.24 E-value=30 Score=29.72 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=55.4
Q ss_pred HHHhcccCC---CCEEEEecCCHHHHHHHHHHH---hCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc------
Q psy2575 43 SQACEHIHS---NEIILTLGYSKIVELFLKNAA---QHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS------ 110 (165)
Q Consensus 43 ~~a~~~I~~---~~~ILT~g~S~tV~~~L~~A~---~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds------ 110 (165)
+..++++.- .++++|-|.+..+..++.... -++.-+|++.+......-..+.......|.++..++..
T Consensus 69 ~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 148 (403)
T TIGR01979 69 EKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLD 148 (403)
T ss_pred HHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCC
Confidence 333445542 356666555544443443321 13445677765432211112223334578888777532
Q ss_pred --hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 111 --AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 111 --av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.+...+.+-.++++-...-...|.+.. -..|+.+|++++++++|=+
T Consensus 149 ~~~l~~~i~~~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~ 196 (403)
T TIGR01979 149 LDDLEKLLTEKTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDG 196 (403)
T ss_pred HHHHHHHhccCCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEc
Confidence 122222222233332222234454443 3568888999999998744
No 61
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=82.17 E-value=30 Score=29.26 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=53.8
Q ss_pred CEEEEecCCHHHHHHHHHHHhC--CceEEEEecCCCCChHHH-HHHHH-hhcCCceEEEccc--------hHHHhch-hC
Q psy2575 53 EIILTLGYSKIVELFLKNAAQH--RKFQCIVMENSPENKGHE-LAVSL-AKSKIQTVLIPDS--------AMFGLIS-RV 119 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~--~~f~ViV~Es~P~~eG~~-la~~L-~~~GI~v~~I~ds--------av~~~m~-~v 119 (165)
.+++|-|.+..+..++.....+ +.-+|++.+ |.+.+.. ....+ +..|.++.+++.. .+...+. +.
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 140 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERT 140 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc
Confidence 5666666665666666554432 455677664 3333321 22333 3678888877532 1222232 34
Q ss_pred CEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 120 NKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 120 ~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+.|++ ...-.+.|.+.. . ..++-+|+++++++++=
T Consensus 141 ~~v~~-~~~~~~tG~~~~-~--~~i~~~~~~~~~~li~D 175 (373)
T cd06453 141 KLVAV-THVSNVLGTINP-V--KEIGEIAHEAGVPVLVD 175 (373)
T ss_pred eEEEE-eCcccccCCcCC-H--HHHHHHHHHcCCEEEEE
Confidence 44443 222233444433 2 46888899999998874
No 62
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=82.11 E-value=27 Score=30.06 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=56.3
Q ss_pred HHHhcccC--C-CCEEEEecCCHHHHHHHHHHHh---CCceEEEEecCCCCChHH--HHHHHHhhcCCceEEEccc----
Q psy2575 43 SQACEHIH--S-NEIILTLGYSKIVELFLKNAAQ---HRKFQCIVMENSPENKGH--ELAVSLAKSKIQTVLIPDS---- 110 (165)
Q Consensus 43 ~~a~~~I~--~-~~~ILT~g~S~tV~~~L~~A~~---~~~f~ViV~Es~P~~eG~--~la~~L~~~GI~v~~I~ds---- 110 (165)
+..++++. + .++++|-|.+..+..++..... ++.-+|++.+ |.+.+. .+.......|+++..++..
T Consensus 70 ~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~ 147 (401)
T PRK10874 70 EQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVKLPLGADRL 147 (401)
T ss_pred HHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEEEecCCCCc
Confidence 33344554 2 3455565555444444443311 2345777775 443332 1233345679988887632
Q ss_pred ----hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 ----AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 ----av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+...+..=+++++=+..-...|.+.. ...|+-+|++++++++|
T Consensus 148 ~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~iv 195 (401)
T PRK10874 148 PDVDLLPELITPRTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMV 195 (401)
T ss_pred CCHHHHHHhcCcCcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 122223222233333434445554432 34688889999999887
No 63
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=81.96 E-value=30 Score=29.12 Aligned_cols=112 Identities=16% Similarity=0.071 Sum_probs=58.8
Q ss_pred HHHHHHHhcccC--CCCEEEEecCCHHHHHHHHHHHh---CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc---
Q psy2575 39 DTAPSQACEHIH--SNEIILTLGYSKIVELFLKNAAQ---HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS--- 110 (165)
Q Consensus 39 ~~Ia~~a~~~I~--~~~~ILT~g~S~tV~~~L~~A~~---~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds--- 110 (165)
++..+..++++. +...++|-|.+......+..+.. +++-+|++.+.. ... +.+.....|+++..++..
T Consensus 62 ~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~--h~s--~~~~~~~~g~~~~~v~~~~~~ 137 (371)
T PRK13520 62 EEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESA--HFS--FDKAADMLGVELRRAPLDDDY 137 (371)
T ss_pred HHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcc--hHH--HHHHHHHcCceEEEecCCCCC
Confidence 444455555554 23456665555444445444433 234567776532 222 233344568888877621
Q ss_pred -----hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 -----AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 -----av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+...+.+-+..++....-...|.+ .. --.|+-+|++++++++|
T Consensus 138 ~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~-~~--l~~I~~l~~~~g~~liv 186 (371)
T PRK13520 138 RVDVKAVEDLIDDNTIGIVGIAGTTELGQV-DP--IPELSKIALENGIFLHV 186 (371)
T ss_pred cCCHHHHHHHHhhCCEEEEEEcCCcCCccc-CC--HHHHHHHHHHcCCCEEE
Confidence 2333333333344433333344444 33 44678889999999987
No 64
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=81.94 E-value=17 Score=26.36 Aligned_cols=39 Identities=5% Similarity=0.051 Sum_probs=27.2
Q ss_pred hCCEEEEccceeecCCCeeeh-hcHHHHHHHHhhCC--CcEEEEe
Q psy2575 118 RVNKIIIGTHTVMANGGLRSV-CGTHAVALAAQHYS--IPYPCTF 159 (165)
Q Consensus 118 ~v~~VllGAd~V~~nG~vvnk-~GT~~lAl~Ak~~~--vPv~V~~ 159 (165)
++|.+++|++.- |++-.. .|+.-...+.++.+ +||+|+.
T Consensus 103 ~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 103 GITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred CCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 489999999863 333322 35445556778888 9999975
No 65
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=81.89 E-value=36 Score=30.05 Aligned_cols=115 Identities=10% Similarity=-0.101 Sum_probs=63.6
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccch---HHH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSA---MFG 114 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsa---v~~ 114 (165)
.+...+..+++....+.+++-+.+..+...+.... +..-+|++...-+...=..+...+...|+++.++.... +..
T Consensus 72 ~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ 150 (403)
T PRK07810 72 VSMFEERLRLIEGAEACFATASGMSAVFTALGALL-GAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEE 150 (403)
T ss_pred HHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHh-CCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHH
Confidence 44455555555555566766666656555554433 34457777654332222233556778899999986432 333
Q ss_pred hch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 115 LIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 115 ~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+. +...|++ ....-+.|.+.. --.++-+|++++++|+|
T Consensus 151 ai~~~tklV~~-esp~Nptg~v~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 151 ALSVPTQAVFF-ETPSNPMQSLVD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred hcCcCceEEEE-ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 343 3333333 111123443332 44678889999999886
No 66
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=81.82 E-value=29 Score=29.57 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcccCCC--CEEEEecCCHHHHHHHHHHHhC--CceEEEEecCCCCChHHHHHH-HH-hhcCCceEEEcc
Q psy2575 36 PTSDTAPSQACEHIHSN--EIILTLGYSKIVELFLKNAAQH--RKFQCIVMENSPENKGHELAV-SL-AKSKIQTVLIPD 109 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~--~~ILT~g~S~tV~~~L~~A~~~--~~f~ViV~Es~P~~eG~~la~-~L-~~~GI~v~~I~d 109 (165)
..++.+++...+++.-. +++++.+.+...+..+..+... +.-+|++.+. .+.+...+. .+ +..|.++..++-
T Consensus 64 ~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~--~h~~~~~~~~~~~~~~g~~~~~v~~ 141 (398)
T cd00613 64 QALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDS--AHPTNPAVARTRGEPLGIEVVEVPS 141 (398)
T ss_pred HHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCc--cCcchHHHHHHhcccCCcEEEEecc
Confidence 34677777777776433 5666655444444444444332 3556776543 332222222 22 234577776653
Q ss_pred c--------hHHHhch-hCCEEEEccceeecCCCeeehhcH-HHHHHHHhhCCCcEEEE
Q psy2575 110 S--------AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGT-HAVALAAQHYSIPYPCT 158 (165)
Q Consensus 110 s--------av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT-~~lAl~Ak~~~vPv~V~ 158 (165)
. .+...+. +...|++-. ....|.+ ..- ..|+-+|+++++++++=
T Consensus 142 ~~~~~~d~~~l~~~i~~~t~~viv~~--~~~~G~~---~~~l~~i~~la~~~g~~livD 195 (398)
T cd00613 142 DEGGTVDLEALKEEVSEEVAALMVQY--PNTLGVF---EDLIKEIADIAHSAGALVYVD 195 (398)
T ss_pred CCCCCcCHHHHHHhcCCCeEEEEEEC--CCCCcee---cchHHHHHHHHHhcCCEEEEE
Confidence 2 2333332 333344433 2344444 243 56888999999998873
No 67
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=81.62 E-value=36 Score=29.82 Aligned_cols=113 Identities=10% Similarity=-0.051 Sum_probs=58.6
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHH-HHHHhhcCCceEEEcc---chH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HEL-AVSLAKSKIQTVLIPD---SAM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~l-a~~L~~~GI~v~~I~d---sav 112 (165)
.+...+..+++....+.++|-|....+...+....+ +.-+|++.. |.+.+ ..+ ...+...|+++..+.- ..+
T Consensus 63 ~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~-~Gd~Vi~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l 139 (390)
T PRK08133 63 VTMFQERLAALEGAEACVATASGMAAILAVVMALLQ-AGDHVVSSR--SLFGSTVSLFEKIFARFGIETTFVDLTDLDAW 139 (390)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-CCCEEEEcc--CcchhHHHHHHHHHHHcCcEEEEECCCCHHHH
Confidence 333444444455544566665544444444443332 334666643 33322 233 3456778999988864 233
Q ss_pred HHhchh-CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLISR-VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~~-v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+.. ...|++- ..--+.|.+. . -..++-+|+++++++++
T Consensus 140 ~~~i~~~tklV~ie-~p~NptG~v~-d--l~~I~~la~~~gi~liv 181 (390)
T PRK08133 140 RAAVRPNTKLFFLE-TPSNPLTELA-D--IAALAEIAHAAGALLVV 181 (390)
T ss_pred HHhcCcCCeEEEEE-CCCCCCCCcC-C--HHHHHHHHHHcCCEEEE
Confidence 334433 3333331 1112334333 2 25678889999999886
No 68
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=81.36 E-value=15 Score=32.84 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=53.1
Q ss_pred CCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcccee
Q psy2575 50 HSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTV 129 (165)
Q Consensus 50 ~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V 129 (165)
.++..|+.+|-+.+=...+.+....+..+|++.|.++.. ....|.+.|+.+.+ ... ...+..+|.|++++-.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~----~~~~l~~~gi~~~~-~~~--~~~~~~~d~vv~spgi- 76 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA----VTQRLLELGAIIFI-GHD--AENIKDADVVVYSSAI- 76 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh----HHHHHHHCCCEEeC-CCC--HHHCCCCCEEEECCCC-
Confidence 345567777655433332222222467889999988763 23458888988765 221 2334678888887632
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
-. +.+.-..|++.++|++
T Consensus 77 ~~---------~~~~~~~a~~~~i~i~ 94 (461)
T PRK00421 77 PD---------DNPELVAARELGIPVV 94 (461)
T ss_pred CC---------CCHHHHHHHHCCCcEE
Confidence 22 2345556667777775
No 69
>PLN02206 UDP-glucuronate decarboxylase
Probab=81.35 E-value=11 Score=33.83 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=53.9
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVM 130 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~ 130 (165)
.+..||+.|-+--|=.-|......+..+|++++..+......+...+.. .++.++.-......+.++|.|+=-|....
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~--~~~~~i~~D~~~~~l~~~D~ViHlAa~~~ 195 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSN--PNFELIRHDVVEPILLEVDQIYHLACPAS 195 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccC--CceEEEECCccChhhcCCCEEEEeeeecc
Confidence 4577888776655533333332224566776654322111122112222 22344322222223445676665442211
Q ss_pred cCCC--------eeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 131 ANGG--------LRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 131 ~nG~--------vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
.... -.|-.||..+.-+|++.+++|+.+..
T Consensus 196 ~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS 233 (442)
T PLN02206 196 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 233 (442)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 1000 15677999999999999998766543
No 70
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.14 E-value=15 Score=32.59 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=54.2
Q ss_pred cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh--cCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 49 IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK--SKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~--~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
++.+.+|+.+|...+=.. +.+....+.++|.+.|..+.. .....|.+ .|+++.+-... ...+.++|.|++++
T Consensus 3 ~~~~~~~~v~G~G~sG~s-~a~~L~~~G~~v~~~D~~~~~---~~~~~l~~~~~g~~~~~~~~~--~~~~~~~d~vV~sp 76 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLS-VVRFLARQGIPFAVMDSREQP---PGLDTLAREFPDVELRCGGFD--CELLVQASEIIISP 76 (448)
T ss_pred cccCCeEEEEeecHhHHH-HHHHHHhCCCeEEEEeCCCCc---hhHHHHHhhcCCcEEEeCCCC--hHHhcCCCEEEECC
Confidence 455667888776543333 332333466899999987643 23345776 37777653222 22346789888877
Q ss_pred ceeecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 127 HTVMANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 127 d~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
+|-++ .+.-..|++.++|++
T Consensus 77 -~i~~~---------~p~~~~a~~~~i~i~ 96 (448)
T PRK03803 77 -GLALD---------TPALRAAAAMGIEVI 96 (448)
T ss_pred -CCCCC---------CHHHHHHHHCCCcEE
Confidence 55443 345566666777765
No 71
>PRK05764 aspartate aminotransferase; Provisional
Probab=80.97 E-value=24 Score=30.19 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 35 NPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 35 ~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
...++.|+++-.. .+....+++|.|.+..+..++....+ ..-+|++.+ |.+.+. ...+...|+++..++..
T Consensus 71 ~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~-~gd~vl~~~--p~y~~~--~~~~~~~g~~~~~~~~~ 145 (393)
T PRK05764 71 PELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLD-PGDEVIIPA--PYWVSY--PEMVKLAGGVPVFVPTG 145 (393)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcC-CCCEEEecC--CCCcch--HHHHHHcCCEEEEEecC
Confidence 5668888876532 24556678887776665555554433 233454433 555443 23344578877766532
Q ss_pred ----------hHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 ----------AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 ----------av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+...+. +...|++- .---+.|.+....=--.++-.|+++++++++
T Consensus 146 ~~~~~~~d~~~l~~~l~~~~~~v~~~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 146 EENGFKLTVEQLEAAITPKTKALILN-SPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred cccCCcCCHHHHHHhhCccceEEEEE-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 2222232 23333322 1112234443333334677888999988875
No 72
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=80.85 E-value=13 Score=30.17 Aligned_cols=76 Identities=11% Similarity=0.138 Sum_probs=48.4
Q ss_pred EEEEecCCCCChHHHHHHHHhhcCCceEEEccch-----HHHhchhCCEEEEccceeecCCCeeehhc-HHHHHHHHhhC
Q psy2575 78 QCIVMENSPENKGHELAVSLAKSKIQTVLIPDSA-----MFGLISRVNKIIIGTHTVMANGGLRSVCG-THAVALAAQHY 151 (165)
Q Consensus 78 ~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsa-----v~~~m~~v~~VllGAd~V~~nG~vvnk~G-T~~lAl~Ak~~ 151 (165)
+|++++..+.+.+ .+...|++.|+.+.+++... ....+...|.++++--- |. ..+.+ ...+..-|...
T Consensus 2 ~ilv~d~~~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp----~~-~~~~~~~~~~i~~~~~~ 75 (214)
T PRK07765 2 RILVVDNYDSFVF-NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGP----GT-PERAGASIDMVRACAAA 75 (214)
T ss_pred eEEEEECCCcHHH-HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCC----CC-hhhcchHHHHHHHHHhC
Confidence 6788888876555 47889999999999887553 11224567877774211 11 12223 22445555667
Q ss_pred CCcEEEEe
Q psy2575 152 SIPYPCTF 159 (165)
Q Consensus 152 ~vPv~V~~ 159 (165)
++|++-+|
T Consensus 76 ~~PiLGIC 83 (214)
T PRK07765 76 GTPLLGVC 83 (214)
T ss_pred CCCEEEEc
Confidence 89999877
No 73
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=80.73 E-value=7.9 Score=34.99 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=59.0
Q ss_pred HHHhcccC--CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCC
Q psy2575 43 SQACEHIH--SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVN 120 (165)
Q Consensus 43 ~~a~~~I~--~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~ 120 (165)
+.|.+.+. .+.++|.+|.+.+.+...++..+ +.++.+.+=+|......+||++|. ..+++...+..++.++|
T Consensus 167 ~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~-~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~D 240 (414)
T COG0373 167 ELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAE-KGVKKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEAD 240 (414)
T ss_pred HHHHHHhcccccCeEEEEcccHHHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCC
Confidence 44444444 47789999999988887777766 333444444677767777888876 67888888999999999
Q ss_pred EEEEccce
Q psy2575 121 KIIIGTHT 128 (165)
Q Consensus 121 ~VllGAd~ 128 (165)
.||.+..+
T Consensus 241 vVissTsa 248 (414)
T COG0373 241 VVISSTSA 248 (414)
T ss_pred EEEEecCC
Confidence 99998644
No 74
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=80.65 E-value=37 Score=29.41 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=57.2
Q ss_pred HhcccC--CCCEEEEecCCHHHHHHHHHHH---hCCceEEEEecCCCCChHH-HHHHHHhhcCCceEEEccc--------
Q psy2575 45 ACEHIH--SNEIILTLGYSKIVELFLKNAA---QHRKFQCIVMENSPENKGH-ELAVSLAKSKIQTVLIPDS-------- 110 (165)
Q Consensus 45 a~~~I~--~~~~ILT~g~S~tV~~~L~~A~---~~~~f~ViV~Es~P~~eG~-~la~~L~~~GI~v~~I~ds-------- 110 (165)
.++++. ++++++|-|.+..+...+.... .++.-+|++.+ +.+... .....+...|+++.+++..
T Consensus 56 la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~ 133 (402)
T TIGR02006 56 VAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLE 133 (402)
T ss_pred HHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHH
Confidence 344453 3467777666555554444332 13444666663 333332 2345566779998888632
Q ss_pred hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 111 AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 111 av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.+...+..-+++++-. .+...-|.+... ..|+-+|++++++++|=+
T Consensus 134 ~l~~~l~~~~~lv~v~-~~~n~tG~~~~~--~~I~~l~~~~g~~livD~ 179 (402)
T TIGR02006 134 ELKAAIRDDTILVSIM-HVNNEIGVIQDI--AAIGEICRERKVFFHVDA 179 (402)
T ss_pred HHHHhcCCCCEEEEEE-CCCcCceecccH--HHHHHHHHHcCCEEEEEc
Confidence 1222332222333322 222222344443 468899999999988733
No 75
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=80.58 E-value=32 Score=30.79 Aligned_cols=117 Identities=13% Similarity=0.056 Sum_probs=62.2
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc---hHHH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS---AMFG 114 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds---av~~ 114 (165)
.+...+.-+++......++|-|.+..+...+....+ ..-+|++........-..+...|.+.|+.++++... ++..
T Consensus 66 ~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~-~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~ 144 (433)
T PRK08134 66 VAVLEERVAALEGGVGAIATASGQAALHLAIATLMG-AGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRA 144 (433)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC-CCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHH
Confidence 333444444455544566665655555444443333 334677764322211122244577899999998633 4444
Q ss_pred hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 115 LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 115 ~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+..=+++++- +.+..-.+.+.. --.++-+|+++++|++|=
T Consensus 145 ~i~~~TklV~~-e~~~np~g~v~D--i~~I~~la~~~gi~livD 185 (433)
T PRK08134 145 AIRPNTRLLFG-ETLGNPGLEVLD--IPTVAAIAHEAGVPLLVD 185 (433)
T ss_pred hcCCCCeEEEE-ECCCcccCcccC--HHHHHHHHHHcCCEEEEE
Confidence 55443344432 223222223333 356899999999999873
No 76
>PRK07568 aspartate aminotransferase; Provisional
Probab=80.47 E-value=29 Score=29.67 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHhc---ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc-
Q psy2575 34 ANPTSDTAPSQACE---HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD- 109 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~---~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d- 109 (165)
....++.|+++... .+....+++|-|.+..+..++.... ++.-+|++.+ |.+.+. ...+...|+++..++.
T Consensus 68 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~--p~y~~~--~~~~~~~g~~~~~v~~~ 142 (397)
T PRK07568 68 IPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAIC-DPGDEILVPE--PFYANY--NGFATSAGVKIVPVTTK 142 (397)
T ss_pred CHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhc-CCCCEEEEec--CCCccH--HHHHHHcCCEEEEeecC
Confidence 35678888876532 2445567777776655544444332 3334677654 555432 2334567887777652
Q ss_pred --c--------hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 --S--------AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 --s--------av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. .+...+ ++...|++. ..-.+.|.+....--..++-.|+++++++++
T Consensus 143 ~~~g~~~~~~~~l~~~~~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 143 IEEGFHLPSKEEIEKLITPKTKAILIS-NPGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred cccCCCCCCHHHHHHhcCccceEEEEE-CCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 1 111222 223333322 1112334444333345688888999988765
No 77
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=80.30 E-value=15 Score=31.54 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=63.5
Q ss_pred HHHHHhccc--CCCCEEEEecCCHHHHHHHHHHHhCCc-eEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhch
Q psy2575 41 APSQACEHI--HSNEIILTLGYSKIVELFLKNAAQHRK-FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS 117 (165)
Q Consensus 41 Ia~~a~~~I--~~~~~ILT~g~S~tV~~~L~~A~~~~~-f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~ 117 (165)
+...+.+++ .+..++..+|.+...+.-+.....-++ -+|+|.+-.|. .-..+++++++.|+++....+ ....++
T Consensus 115 ~salaa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~-~~~~~~~~~~~~g~~v~~~~~--~~eav~ 191 (325)
T TIGR02371 115 AGGVAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPS-TREKFALRASDYEVPVRAATD--PREAVE 191 (325)
T ss_pred HHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHH-HHHHHHHHHHhhCCcEEEeCC--HHHHhc
Confidence 334455777 345788889999766654443333233 34555543333 345678888888888776654 345668
Q ss_pred hCCEEEEcc---ce-----eecCCCeeehhcHH
Q psy2575 118 RVNKIIIGT---HT-----VMANGGLRSVCGTH 142 (165)
Q Consensus 118 ~v~~VllGA---d~-----V~~nG~vvnk~GT~ 142 (165)
++|.|+... +- .+..|..++-+|++
T Consensus 192 ~aDiVitaT~s~~P~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 192 GCDILVTTTPSRKPVVKADWVSEGTHINAIGAD 224 (325)
T ss_pred cCCEEEEecCCCCcEecHHHcCCCCEEEecCCC
Confidence 999998755 22 34678899999975
No 78
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=80.03 E-value=24 Score=31.79 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=60.0
Q ss_pred HHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc----chHHH
Q psy2575 39 DTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD----SAMFG 114 (165)
Q Consensus 39 ~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d----sav~~ 114 (165)
+...+..+++......|.+-|....+...+....+ +.-+|++....-..-...+...|...|++++++.+ ..+..
T Consensus 72 ~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~-~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~ 150 (437)
T PRK05613 72 EALENRIASLEGGVHAVAFASGQAAETAAILNLAG-AGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQA 150 (437)
T ss_pred HHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcC-CCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHH
Confidence 33333334444433455554444444444443332 33467776332222223345677889999999963 23444
Q ss_pred hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 115 LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 115 ~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+..=+++++ .+.....-+.+.. --.++-+|+++++|++|
T Consensus 151 ~l~~~tk~V~-~e~~~Np~~~v~d--i~~I~~la~~~gi~liv 190 (437)
T PRK05613 151 AVQPNTKAFF-GETFANPQADVLD--IPAVAEVAHRNQVPLIV 190 (437)
T ss_pred hCCccCeEEE-EECCCCCCCcccC--HHHHHHHHHHcCCeEEE
Confidence 4543344444 2332222123333 45678899999999887
No 79
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=79.98 E-value=11 Score=33.11 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCceEEEccchH--------HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhh----CCCcEEEE
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAM--------FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQH----YSIPYPCT 158 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav--------~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~----~~vPv~V~ 158 (165)
.+.++.|.+.||++++|....+ ....++.++|++ ++++....-.|+.....++.. ...|+.-+
T Consensus 244 l~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvt-----vEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rl 318 (356)
T PLN02683 244 LKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVT-----VEEGWPQHGVGAEICASVVEESFDYLDAPVERI 318 (356)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEE-----EeCCCcCCCHHHHHHHHHHHhchhccCCCeEEe
Confidence 3445667777777777755443 234455666644 445555555888888888887 36788776
Q ss_pred eec
Q psy2575 159 FLL 161 (165)
Q Consensus 159 ~~~ 161 (165)
+--
T Consensus 319 g~~ 321 (356)
T PLN02683 319 AGA 321 (356)
T ss_pred ccC
Confidence 543
No 80
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=79.97 E-value=31 Score=30.05 Aligned_cols=114 Identities=8% Similarity=0.017 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH-HH-HHHHhhcCCceEEEccc---h
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH-EL-AVSLAKSKIQTVLIPDS---A 111 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~-~l-a~~L~~~GI~v~~I~ds---a 111 (165)
..+.+.+..+++....+.+++-+.+..+..++ ... +..-+|++.+ |.+.+- .+ ...+...|+++..++.. .
T Consensus 48 ~~~~le~~la~l~g~~~~l~~~sG~~al~~~l-~ll-~~Gd~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~ 123 (378)
T TIGR01329 48 TRTALESLLAKLDKADRAFAFSSGMAALDVIT-RLL-NNGDEIIAGD--DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDK 123 (378)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCHHHHHHHHH-HHh-CCCCEEEEcC--CCchHHHHHHHHHHHHcCcEEEEeCCCCHHH
Confidence 35666666666666555555544443333333 333 3444677653 444442 33 33456689999988743 2
Q ss_pred HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 112 MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 112 v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+...+..=+++++-...--+.|.+.. -..++-+|++++++++|
T Consensus 124 le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~viv 166 (378)
T TIGR01329 124 VKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVV 166 (378)
T ss_pred HHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEE
Confidence 33334322333332222223443332 45678889999998887
No 81
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=79.35 E-value=5.5 Score=31.61 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=46.4
Q ss_pred eEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCee----ehhcHHHHHHHHhhCC
Q psy2575 77 FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLR----SVCGTHAVALAAQHYS 152 (165)
Q Consensus 77 f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vv----nk~GT~~lAl~Ak~~~ 152 (165)
+-|.+.+..|...-..+.+.|++.|+++..+..... .-++++|.++++--. +... ...+......-+-..+
T Consensus 3 i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-~~l~~~d~iii~GG~----~~~~~~~~~~~~~~~~i~~~~~~~ 77 (200)
T PRK13527 3 IGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-GDLPDCDALIIPGGE----STTIGRLMKREGILDEIKEKIEEG 77 (200)
T ss_pred EEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-HHhccCCEEEECCCc----HHHHHHHHhhccHHHHHHHHHHCC
Confidence 456777777666666778889999987776665432 345677877776421 1111 1112222223333478
Q ss_pred CcEEEEe
Q psy2575 153 IPYPCTF 159 (165)
Q Consensus 153 vPv~V~~ 159 (165)
+|++-+|
T Consensus 78 ~pilGIC 84 (200)
T PRK13527 78 LPILGTC 84 (200)
T ss_pred CeEEEEC
Confidence 9999876
No 82
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=79.34 E-value=20 Score=27.56 Aligned_cols=39 Identities=8% Similarity=-0.111 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccc
Q psy2575 89 KGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTH 127 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd 127 (165)
+-.++++.+++.|+++..|++..-..+-+.+|.+|.-..
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~ 125 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPA 125 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCC
Confidence 335668889999999999999988888888999886543
No 83
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=79.15 E-value=39 Score=28.76 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=59.2
Q ss_pred HHHHHHhcccC--CCCEEEEecCCHHHHHHHHHHHh--CCceEEEEecCCCCChH-HHHHHHHhhcCCceEEEccc----
Q psy2575 40 TAPSQACEHIH--SNEIILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSPENKG-HELAVSLAKSKIQTVLIPDS---- 110 (165)
Q Consensus 40 ~Ia~~a~~~I~--~~~~ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P~~eG-~~la~~L~~~GI~v~~I~ds---- 110 (165)
+.-+..++++. ...+++|-|.+..+...+..... ...-+|++.+.. +.+ ....+.+...|+++..++..
T Consensus 46 ~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~--~~s~~~~~~~~~~~G~~v~~v~~~~~g~ 123 (379)
T TIGR03402 46 EAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVE--HPAVLSLCQHLEKQGYKVTYLPVDEEGR 123 (379)
T ss_pred HHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccc--cHHHHHHHHHHHHcCCEEEEEccCCCCc
Confidence 33344455554 34577777666655555554322 122344444322 222 23345566789999888632
Q ss_pred ----hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 111 ----AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 111 ----av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+...+..=++++.-...=...| .+... ..|+-+|+++++++++=
T Consensus 124 ~~~~~l~~~i~~~~~lv~i~~~~n~tG-~~~~~--~~I~~l~~~~g~~vivD 172 (379)
T TIGR03402 124 LDLEELRAAITDDTALVSVMWANNETG-TIFPI--EEIGEIAKERGALFHTD 172 (379)
T ss_pred CCHHHHHHhcCCCcEEEEEEcccCCee-ecccH--HHHHHHHHHcCCEEEEE
Confidence 22233322223333222223333 44443 36888999999998873
No 84
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=79.00 E-value=26 Score=28.57 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhccc----CCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 35 NPTSDTAPSQACEHI----HSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I----~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
...++.+++.-.... .+..+++|.|.+..+...+.... ++.-+|++.. |...+ +...+...|+++..++..
T Consensus 39 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~g~~vl~~~--~~~~~--~~~~~~~~~~~~~~i~~~ 113 (350)
T cd00609 39 PELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL-NPGDEVLVPD--PTYPG--YEAAARLAGAEVVPVPLD 113 (350)
T ss_pred HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC-CCCCEEEEcC--CCchh--HHHHHHHCCCEEEEEecc
Confidence 445566665543332 24567777666666555555443 3445666653 44433 334445567777666644
Q ss_pred hHHH----------hc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 111 AMFG----------LI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 111 av~~----------~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.-.. .. ++...|++-. .-.+.|.+....--..+.-+|+++++++++=
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD 171 (350)
T cd00609 114 EEGGFLLDLELLEAAKTPKTKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISD 171 (350)
T ss_pred cccCCccCHHHHHhhcCccceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEEEEe
Confidence 2221 11 2345555543 3344554443333334567889999998873
No 85
>PRK07324 transaminase; Validated
Probab=78.37 E-value=34 Score=29.46 Aligned_cols=116 Identities=12% Similarity=0.008 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc----
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS---- 110 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds---- 110 (165)
...++.|++.-. .+....+++|.|.+..+...+.... ++.-+|++. .|.+.+.. ..+...|.++..++..
T Consensus 65 ~~lr~~ia~~~~-~~~~~~vi~t~G~~~al~~~~~~l~-~~gd~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~ 138 (373)
T PRK07324 65 PEFKEAVASLYQ-NVKPENILQTNGATGANFLVLYALV-EPGDHVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENG 138 (373)
T ss_pred HHHHHHHHHHhc-CCChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEc--CCCchhHH--HHHHHcCCEEEEEecccccC
Confidence 566888887532 2455678888887766555554333 333456664 46654432 3344578777777632
Q ss_pred ------hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 ------AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 ------av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
++...+ ++...+++. ..=-+.|.++.+.=-..++-+|+++++.+++
T Consensus 139 ~~~d~~~l~~~~~~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 139 WLPDLDELRRLVRPNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCCHHHHHHhCCCCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 122222 233333333 2234556666666567888889999987764
No 86
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=78.24 E-value=3.1 Score=37.02 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=32.1
Q ss_pred hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 115 LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 115 ~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
.++++|.||.|==++-.. ++..|+ ...+|-+||.|+|||+.+|.+
T Consensus 281 ~v~daDLVITGEGr~D~Q-s~~GK~-pigVA~~Akk~~vPvIaiaGs 325 (378)
T COG1929 281 AVKDADLVITGEGRIDSQ-SLHGKT-PIGVAKLAKKYGVPVIAIAGS 325 (378)
T ss_pred hhccCCEEEeCCCccccc-ccCCcc-chHHHHhhhhhCCCEEEEecc
Confidence 556899999996443332 333333 345788999999999999875
No 87
>KOG3349|consensus
Probab=77.74 E-value=3.8 Score=32.52 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=43.4
Q ss_pred cccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCC
Q psy2575 47 EHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKI 102 (165)
Q Consensus 47 ~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI 102 (165)
+.|++.+.|+-|..+-+.++.|. .++++-|.+-|+-=.+...++|+.|.+.|.
T Consensus 76 e~I~~AdlVIsHAGaGS~letL~---l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 76 EDIRSADLVISHAGAGSCLETLR---LGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHHhhccEEEecCCcchHHHHHH---cCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 46677888888877777776665 368899999999888888999999999994
No 88
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=77.65 E-value=45 Score=28.65 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=53.3
Q ss_pred CCEEEEecCCHHHHHHHHHHHh---CCceEEEEecCCCCChHH--HHHHHHhhcCCceEEEccc--------hHHHhch-
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQ---HRKFQCIVMENSPENKGH--ELAVSLAKSKIQTVLIPDS--------AMFGLIS- 117 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~---~~~f~ViV~Es~P~~eG~--~la~~L~~~GI~v~~I~ds--------av~~~m~- 117 (165)
.++++|-|.+..+..++..... ++.-+|++.+ |.+.+- .+.......|+++..++.. .+...+.
T Consensus 79 ~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 79 ENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECC--cchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4567776666555555543311 2334677654 443332 2233345679888887532 2223332
Q ss_pred hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 118 RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 118 ~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+...|++ +..=.+.|.+.. -..++-+|+++++++++
T Consensus 157 ~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 157 RTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVV 192 (398)
T ss_pred CceEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 3333333 333344554432 24578889999998886
No 89
>PLN02656 tyrosine transaminase
Probab=77.56 E-value=48 Score=28.90 Aligned_cols=119 Identities=12% Similarity=0.105 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHhcc----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 34 ANPTSDTAPSQACEH----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
....++.++++.... +...++++|.|.+..+..++.... ++.-+|++. .|.+.+...+..+ .|+++..++.
T Consensus 75 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~~ 149 (409)
T PLN02656 75 LPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA-RPGANILLP--RPGFPIYELCAAF--RHLEVRYVDL 149 (409)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh-CCCCeEEEe--CCCCCcHHHHHHH--cCCEEEEEeC
Confidence 356788888876542 556678888777665544444332 334466665 3555444443333 6777766652
Q ss_pred c----------hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 S----------AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 s----------av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. .+...++.-+++++=..-=-+.|.++.+-=-..++-.|+++++++++
T Consensus 150 ~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 150 LPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred CCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1 11122222123222221112334444333344577888999988775
No 90
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=77.49 E-value=43 Score=28.93 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=55.5
Q ss_pred HHHhcccC---CCCEEEEecCCHHHHHHHHHH---HhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc------
Q psy2575 43 SQACEHIH---SNEIILTLGYSKIVELFLKNA---AQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS------ 110 (165)
Q Consensus 43 ~~a~~~I~---~~~~ILT~g~S~tV~~~L~~A---~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds------ 110 (165)
+..++++. ..++++|-|.+..+..++... .-++.-+|++.+......-..+.......|+++..++..
T Consensus 74 ~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d 153 (406)
T PRK09295 74 KQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQ 153 (406)
T ss_pred HHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCC
Confidence 33344553 346777766554444333321 113344677765321111111222334579988887631
Q ss_pred --hHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 --AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 --av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+...+. +...|.+. ..=.+.|.+.. ...++-+|++++++++|
T Consensus 154 ~~~l~~~i~~~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~viv 199 (406)
T PRK09295 154 LETLPALFDERTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKVLV 199 (406)
T ss_pred HHHHHHhcCCCcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEEEE
Confidence 2333332 33344433 33345555433 24578889999988876
No 91
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=77.36 E-value=42 Score=28.47 Aligned_cols=117 Identities=9% Similarity=0.017 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHhcc-----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc
Q psy2575 34 ANPTSDTAPSQACEH-----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~-----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ 108 (165)
....++.|+++..+. +...++++|.|.+..+..++....-++.-+|++. .|.+.+...+ ....|.++..++
T Consensus 64 ~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~ 139 (364)
T PRK07865 64 TPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIP--ELAYPTYEVG--ARLAGATVVRAD 139 (364)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEEC--CCCcccHHHH--HHhcCCEEEecC
Confidence 357788999877542 5567888888888766554333211233355554 3666554433 234687777765
Q ss_pred cchHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 109 DSAMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 109 dsav~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+ ...+- ++...+++- .-=.+.|.++...=--.++-+|+++++++++
T Consensus 140 ~--~~~l~~~~~~~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 186 (364)
T PRK07865 140 S--LTELGPQRPALIWLN-SPSNPTGRVLGVDHLRKVVAWARERGAVVAS 186 (364)
T ss_pred C--hhhCCcccceEEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4 11111 223333331 1112233333332234677888999987764
No 92
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=77.26 E-value=11 Score=27.97 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=51.5
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
++..++.+|.+.+...++....+..--+|+++- |......++++.+ .+.++.+++.......++++|.|+-..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n-Rt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVN-RTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE-SSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE-CCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEec
Confidence 478999999999888888877763222355553 4444456677777 456677778778888899999888654
No 93
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=77.26 E-value=10 Score=29.04 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=55.8
Q ss_pred ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccc
Q psy2575 48 HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTH 127 (165)
Q Consensus 48 ~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd 127 (165)
.+..+++|..+||=.- ++... +++..+++|.|=.|...|.. ..+ +++.....++++||.|++-..
T Consensus 7 ~~~~~~~V~~VG~f~P---~~~~l-~~~~~~v~v~d~~~~~~~~~------~~~-----~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 7 EIGPGDKVGMVGYFQP---LVEKL-KERGAEVRVFDLNPDNIGEE------PGD-----VPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp CTTTTSEEEEES--HC---CHHHH-CCCCSEEEEEESSGGG--SS------CT------EEGGGHHHHGGG-SEEEEECH
T ss_pred hhcCCCEEEEEcCcHH---HHHHH-hcCCCCEEEEECCCCCCCCC------CCc-----CCHHHHHHHHccCCEEEEEee
Confidence 3678999999997422 22322 24778999999888542210 011 178888999999999999876
Q ss_pred eeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 128 TVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 128 ~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
++. | ||..--+.......++++..|+.
T Consensus 72 Tlv------N--~Ti~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 72 TLV------N--GTIDDILELARNAREVILYGPSA 98 (147)
T ss_dssp HCC------T--TTHHHHHHHTTTSSEEEEESCCG
T ss_pred eee------c--CCHHHHHHhCccCCeEEEEecCc
Confidence 633 3 34433333333578888877653
No 94
>KOG3075|consensus
Probab=77.23 E-value=14 Score=31.50 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh----CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
+.+++.-+.++.+....+-.|+-+|..+||........+ +.--+|+.+- .+.+.+..+.+.||++.....
T Consensus 25 e~~kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVP-----ts~~s~q~~~~~gi~l~~~d~- 98 (261)
T KOG3075|consen 25 EEAKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVP-----TSFRSAQLALEYGIPLSDLDS- 98 (261)
T ss_pred HHHHHHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecc-----cchhhHHHHHhcCCccccCCC-
Confidence 445667777888877777778888888888776655533 3334455442 233457778889999987766
Q ss_pred hHHHhchhCCEEEEccceeecCCCeeehhcH
Q psy2575 111 AMFGLISRVNKIIIGTHTVMANGGLRSVCGT 141 (165)
Q Consensus 111 av~~~m~~v~~VllGAd~V~~nG~vvnk~GT 141 (165)
=+.+|..|=|||.|-+|..++---|-
T Consensus 99 -----hp~iDlaidgADEvd~nln~ikggGg 124 (261)
T KOG3075|consen 99 -----HPVIDLAIDGADEVDENLNLIKGGGG 124 (261)
T ss_pred -----CceeEEEecCchhhCcCcceEEeccc
Confidence 35789999999999999887765554
No 95
>PLN02409 serine--glyoxylate aminotransaminase
Probab=77.22 E-value=49 Score=28.84 Aligned_cols=121 Identities=6% Similarity=-0.013 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcccCC--CCEEEEecCCHHH-HHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc--
Q psy2575 36 PTSDTAPSQACEHIHS--NEIILTLGYSKIV-ELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS-- 110 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~--~~~ILT~g~S~tV-~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds-- 110 (165)
...+++.+...+++.. ++.+++.+.++.. ...+.... ++.-+|++.+ |...+..++..++..|.++..++..
T Consensus 42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-~~Gd~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~~~~~ 118 (401)
T PLN02409 42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-SPGDKVVSFR--IGQFSLLWIDQMQRLNFDVDVVESPWG 118 (401)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-CCCCEEEEeC--CCchhHHHHHHHHHcCCceEEEECCCC
Confidence 4456666666666543 3455555544332 22333222 3445788776 4555666666677789888877632
Q ss_pred ------hHHHhch-----hCCEEEEccceeecCCCeeehhcHHHHHHH--HhhCCCcEEEEeeccc
Q psy2575 111 ------AMFGLIS-----RVNKIIIGTHTVMANGGLRSVCGTHAVALA--AQHYSIPYPCTFLLNI 163 (165)
Q Consensus 111 ------av~~~m~-----~v~~VllGAd~V~~nG~vvnk~GT~~lAl~--Ak~~~vPv~V~~~~~~ 163 (165)
.+...+. +...|++ .+.-.+.|.+.. -..++-+ |++++++++|=+-.++
T Consensus 119 ~~~~~~~l~~~l~~~~~~~~k~v~~-~~~~~~tG~~~~---~~~i~~l~~~~~~g~~~vvD~v~s~ 180 (401)
T PLN02409 119 QGADLDILKSKLRQDTNHKIKAVCV-VHNETSTGVTND---LAGVRKLLDCAQHPALLLVDGVSSI 180 (401)
T ss_pred CCCCHHHHHHHHhhCcCCCccEEEE-EeecccccccCC---HHHHHHHHhhhccCcEEEEEccccc
Confidence 2333333 2333443 444445554443 2335566 8889998887444443
No 96
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=77.17 E-value=23 Score=24.93 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=49.7
Q ss_pred EEecCCHHHHHHHHHHHh-----CCceEEE-EecCCCC---ChHHHH----HHHHhhcCCceEEEccchHHH----hch-
Q psy2575 56 LTLGYSKIVELFLKNAAQ-----HRKFQCI-VMENSPE---NKGHEL----AVSLAKSKIQTVLIPDSAMFG----LIS- 117 (165)
Q Consensus 56 LT~g~S~tV~~~L~~A~~-----~~~f~Vi-V~Es~P~---~eG~~l----a~~L~~~GI~v~~I~dsav~~----~m~- 117 (165)
+-++.|.+-...+..|.+ +..++++ |.+..+. .+..+. .+..++.++++..+....... +..
T Consensus 4 v~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~ 83 (124)
T cd01987 4 VCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDVAEAIVEFARE 83 (124)
T ss_pred EEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHH
Confidence 335555544554444433 4455544 4433221 122222 344556788776655543333 222
Q ss_pred -hCCEEEEccceeecCCCeee-hhcHHHHHHHHhhC-CCcEEEE
Q psy2575 118 -RVNKIIIGTHTVMANGGLRS-VCGTHAVALAAQHY-SIPYPCT 158 (165)
Q Consensus 118 -~v~~VllGAd~V~~nG~vvn-k~GT~~lAl~Ak~~-~vPv~V~ 158 (165)
++|.+++|++.- |.+-. -.|+.. --+.++. ++||.|+
T Consensus 84 ~~~dllviG~~~~---~~~~~~~~Gs~~-~~v~~~a~~~~v~v~ 123 (124)
T cd01987 84 HNVTQIVVGKSRR---SRWRELFRGSLV-DRLLRRAGNIDVHIV 123 (124)
T ss_pred cCCCEEEeCCCCC---chHHHHhcccHH-HHHHHhCCCCeEEEe
Confidence 389999999853 22222 234333 3344554 8998886
No 97
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.87 E-value=28 Score=31.51 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=54.5
Q ss_pred cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccce
Q psy2575 49 IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHT 128 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~ 128 (165)
+..|..|+++|.+.+=...+.-++ .+..+|++.|.+|. . ...|.+.|+.+..... -...++++|.|+.++-
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~-~~G~~v~~~D~~~~----~-~~~l~~~g~~~~~~~~--~~~~l~~~D~VV~SpG- 79 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALT-RFGARPTVCDDDPD----A-LRPHAERGVATVSTSD--AVQQIADYALVVTSPG- 79 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHH-HCCCEEEEEcCCHH----H-HHHHHhCCCEEEcCcc--hHhHhhcCCEEEECCC-
Confidence 446788999988865444443333 24568889997653 1 2346677875532222 2234567787777652
Q ss_pred eecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 129 VMANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 129 V~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
|-. ..+.-..|++.++|++
T Consensus 80 i~~---------~~p~~~~a~~~gi~v~ 98 (488)
T PRK03369 80 FRP---------TAPVLAAAAAAGVPIW 98 (488)
T ss_pred CCC---------CCHHHHHHHHCCCcEe
Confidence 222 3466777788888877
No 98
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=76.77 E-value=25 Score=27.79 Aligned_cols=93 Identities=15% Similarity=0.225 Sum_probs=53.9
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhch
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS 117 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~ 117 (165)
.+.|- ++...+-.|..+++.||+.+=..+=..+ ++..-+|+|+|..|.. ... -...|+++.- +...++
T Consensus 10 ~d~i~-r~t~~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~----alq-A~~dGf~v~~-----~~~a~~ 77 (162)
T PF00670_consen 10 VDGIM-RATNLMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIR----ALQ-AAMDGFEVMT-----LEEALR 77 (162)
T ss_dssp HHHHH-HHH-S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHH----HHH-HHHTT-EEE------HHHHTT
T ss_pred HHHHH-hcCceeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHH----HHH-hhhcCcEecC-----HHHHHh
Confidence 33444 4567888899999999997655444443 3466899999999942 211 1237888763 444678
Q ss_pred hCCEEEE--cccee--------ecCCCeeehhcHH
Q psy2575 118 RVNKIII--GTHTV--------MANGGLRSVCGTH 142 (165)
Q Consensus 118 ~v~~Vll--GAd~V--------~~nG~vvnk~GT~ 142 (165)
++|.++- |...| +.||.++..+|.+
T Consensus 78 ~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 78 DADIFVTATGNKDVITGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp T-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred hCCEEEECCCCccccCHHHHHHhcCCeEEeccCcC
Confidence 8998874 33222 4689999999986
No 99
>PRK06836 aspartate aminotransferase; Provisional
Probab=76.31 E-value=50 Score=28.54 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 35 NPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 35 ~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
...++.++++-.. .+....+++|-|.+..+..++.... .+.-+|++.+ |.+.+. ...+...|+++..++..
T Consensus 76 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vli~~--p~~~~~--~~~~~~~g~~v~~v~~~ 150 (394)
T PRK06836 76 PEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-NPGDEVIVFA--PYFVEY--RFYVDNHGGKLVVVPTD 150 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc-CCCCEEEEcC--CCCccH--HHHHHHcCCEEEEEecC
Confidence 4567777775533 2456667777776655444444332 2334566554 666553 33345679888887532
Q ss_pred ---------hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhh------CCCcEEE
Q psy2575 111 ---------AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQH------YSIPYPC 157 (165)
Q Consensus 111 ---------av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~------~~vPv~V 157 (165)
.+...+ ++...|++ ...-.+.|.++...--..++-+|++ +++++++
T Consensus 151 ~~~~~~d~~~l~~~~~~~~~~v~~-~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~ 212 (394)
T PRK06836 151 TDTFQPDLDALEAAITPKTKAVII-NSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLIS 212 (394)
T ss_pred CccCcCCHHHHHhhcCcCceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 111222 23444444 3344555666666666677777777 7777664
No 100
>PLN02778 3,5-epimerase/4-reductase
Probab=76.14 E-value=17 Score=30.43 Aligned_cols=83 Identities=11% Similarity=0.024 Sum_probs=48.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCceEEEc----c-chHHHhch--hCCEEEEccceeec-CC----------Ceee
Q psy2575 76 KFQCIVMENSPENKGHELAVSLAKSKIQTVLIP----D-SAMFGLIS--RVNKIIIGTHTVMA-NG----------GLRS 137 (165)
Q Consensus 76 ~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~----d-sav~~~m~--~v~~VllGAd~V~~-nG----------~vvn 137 (165)
..+|+|+-+ -++=|..+++.|.+.|.+|++.. | ..+...+. ++|.|+=-|--... +- --.|
T Consensus 9 ~~kiLVtG~-tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~N 87 (298)
T PLN02778 9 TLKFLIYGK-TGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRAN 87 (298)
T ss_pred CCeEEEECC-CCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHHHHH
Confidence 345555533 35567777777777777765431 1 12333333 46776644422110 10 0167
Q ss_pred hhcHHHHHHHHhhCCCcEEEEe
Q psy2575 138 VCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 138 k~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
..||..++-+|+++++++++..
T Consensus 88 v~gt~~ll~aa~~~gv~~v~~s 109 (298)
T PLN02778 88 VVGTLTLADVCRERGLVLTNYA 109 (298)
T ss_pred HHHHHHHHHHHHHhCCCEEEEe
Confidence 8899999999999999887764
No 101
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=76.13 E-value=20 Score=29.81 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=17.3
Q ss_pred hcHHHHHHHHhhCCCcEEEEe
Q psy2575 139 CGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 139 ~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.-+.+.+.+|+++++||.+++
T Consensus 183 Me~~~e~~~A~~~gi~~~~i~ 203 (261)
T PRK08666 183 MTQVPEAVLARELEMCYATVA 203 (261)
T ss_pred cchHHHHHHHHHCCCcEEEEE
Confidence 346788999999999999874
No 102
>PRK09932 glycerate kinase II; Provisional
Probab=75.43 E-value=4.9 Score=35.89 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=31.3
Q ss_pred hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 115 LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 115 ~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
.++++|.||.|=-.+-.. ++.. .....+|..|++|++||+++|.+
T Consensus 281 ~l~~ADlVITGEG~~D~Q-t~~G-K~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 281 AVQGAALVITGEGRIDSQ-TAGG-KAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred HhccCCEEEECCCccccc-ccCC-ccHHHHHHHHHHcCCCEEEEecc
Confidence 345689999986443322 2222 34567888999999999999865
No 103
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=75.36 E-value=45 Score=28.54 Aligned_cols=96 Identities=10% Similarity=0.013 Sum_probs=58.8
Q ss_pred EEEEecCCHHHHHHHHHHHhCCceEEE-EecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecC
Q psy2575 54 IILTLGYSKIVELFLKNAAQHRKFQCI-VMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMAN 132 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~~f~Vi-V~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~n 132 (165)
.|..+|.+..-...+....+.+.+++. +++..|...|..++++ .|+++++- +-....--+++|.|++..-.=
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~---~Gi~~~~~-~~e~ll~~~dIDaV~iaTp~~--- 75 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARE---LGVKTSAE-GVDGLLANPDIDIVFDATSAK--- 75 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHH---CCCCEEEC-CHHHHhcCCCCCEEEECCCcH---
Confidence 355666654334444444445667755 6677787777666654 68876542 211111235789998875221
Q ss_pred CCeeehhcHHHHHHHHhhCCCcEEEEeeccc
Q psy2575 133 GGLRSVCGTHAVALAAQHYSIPYPCTFLLNI 163 (165)
Q Consensus 133 G~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~~ 163 (165)
--...+..|.+++++|+...|.-+
T Consensus 76 -------~H~e~a~~al~aGk~VIdekPa~~ 99 (285)
T TIGR03215 76 -------AHARHARLLAELGKIVIDLTPAAI 99 (285)
T ss_pred -------HHHHHHHHHHHcCCEEEECCcccc
Confidence 235688889999999988776653
No 104
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=75.04 E-value=25 Score=27.90 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=43.6
Q ss_pred EEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeeh-hcHHHHHHHHhhCCCcEE
Q psy2575 78 QCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSV-CGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 78 ~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk-~GT~~lAl~Ak~~~vPv~ 156 (165)
+|.|++-.-.+ -..+++.|++.|.++.+..+. .-++++|.++++--....+ .... -.......-+...++|++
T Consensus 2 ~~~v~~~~~~~-~~~~~~~l~~~G~~~~~~~~~---~~~~~~d~iii~G~~~~~~--~~~~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 2 MIVIIDYGVGN-LRSVSKALERAGAEVVITSDP---EEILDADGIVLPGVGAFGA--AMENLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred eEEEEECCCcc-HHHHHHHHHHCCCeEEEECCH---HHHccCCEEEECCCCCHHH--HHHHHHHHHHHHHHHHHcCCCEE
Confidence 45566543222 267899999999998888653 2346788887764111100 0010 112222333446689999
Q ss_pred EEee
Q psy2575 157 CTFL 160 (165)
Q Consensus 157 V~~~ 160 (165)
-+|-
T Consensus 76 gIC~ 79 (200)
T PRK13143 76 GICL 79 (200)
T ss_pred EECH
Confidence 8873
No 105
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=74.70 E-value=17 Score=30.39 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=44.8
Q ss_pred EEecCCHHHHHHHHHHHh--CCceE--EEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeec
Q psy2575 56 LTLGYSKIVELFLKNAAQ--HRKFQ--CIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMA 131 (165)
Q Consensus 56 LT~g~S~tV~~~L~~A~~--~~~f~--ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~ 131 (165)
|+--|++.+.+.+.++.+ +.+++ +|+.=.-|.++-..=.+-+++. |||+|--
T Consensus 134 ~~~~yd~~Lr~~~~~~a~~~~~~~~~Gvy~~~~GP~FeT~AE~r~~~~~------------------------Gad~VgM 189 (248)
T TIGR01699 134 LANAYDAEYRALLQKVAKEEGFPLTEGVFVSYPGPNFETAAEIRMMQII------------------------GGDVVGM 189 (248)
T ss_pred CCCccCHHHHHHHHHHHHHcCCceeeEEEEEeeCCCcCCHHHHHHHHHc------------------------CCcEEcc
Confidence 333477777776666655 22222 6666667776644332333333 5666544
Q ss_pred CCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 132 NGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 132 nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
. +.+.|.+|+++++||.+++-
T Consensus 190 s--------~vpEa~~A~~~g~~~~~i~~ 210 (248)
T TIGR01699 190 S--------VVPEVISARHCDLKVVAVSA 210 (248)
T ss_pred c--------hhHHHHHHHHCCCcEEEEEE
Confidence 3 57888999999999987753
No 106
>PRK06108 aspartate aminotransferase; Provisional
Probab=74.55 E-value=52 Score=27.85 Aligned_cols=117 Identities=10% Similarity=0.039 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhcc----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 35 NPTSDTAPSQACEH----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
...++.++++..++ +...++++|.|.+..+..++... -++.-+|++. .|.+.+. ...+...|+++..++..
T Consensus 64 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~vl~~--~p~y~~~--~~~~~~~g~~~~~v~~~ 138 (382)
T PRK06108 64 PELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL-VGPGDEVVAV--TPLWPNL--VAAPKILGARVVCVPLD 138 (382)
T ss_pred HHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh-cCCCCEEEEe--CCCccch--HHHHHHCCCEEEEeeCC
Confidence 56788888876543 45566777777665554444433 2334456664 3544332 23445678887776542
Q ss_pred -----------hHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 -----------AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 -----------av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+...+. +...+++. ..=-+.|.+...-=-..++-.|+++++++++
T Consensus 139 ~~~~~~~~d~~~l~~~~~~~~~~i~l~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 139 FGGGGWTLDLDRLLAAITPRTRALFIN-SPNNPTGWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CCCCCccCCHHHHHHhcCccceEEEEE-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 1222222 23333332 1112223333322234577788889887764
No 107
>PRK05968 hypothetical protein; Provisional
Probab=74.05 E-value=60 Score=28.36 Aligned_cols=113 Identities=4% Similarity=-0.060 Sum_probs=61.4
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HH-HHHHHhhcCCceEEEccc---hH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HE-LAVSLAKSKIQTVLIPDS---AM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~-la~~L~~~GI~v~~I~ds---av 112 (165)
.+..-+..+++......+++-+.+..+...+.... +..-+|++.+ |.+.+ .. +...+...|+++.++... .+
T Consensus 65 ~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~-~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l 141 (389)
T PRK05968 65 VRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFV-EPGDRIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAV 141 (389)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHH
Confidence 34444444556654456665444433333333222 3334666654 34333 32 345677789999988533 33
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+++...|++- .+.|-.....=-..++-+|+++++|++|
T Consensus 142 ~~~i~~tklV~ie----~pt~~~~~~~dl~~i~~la~~~gi~viv 182 (389)
T PRK05968 142 AKALPGAKLLYLE----SPTSWVFELQDVAALAALAKRHGVVTMI 182 (389)
T ss_pred HHhcccCCEEEEE----CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 3344555555552 2333444444445678889999999886
No 108
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=73.97 E-value=18 Score=33.09 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=47.5
Q ss_pred hHHHHHHHHhhcCCceEEEccchHH--------HhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhh----CCCcEE
Q psy2575 89 KGHELAVSLAKSKIQTVLIPDSAMF--------GLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQH----YSIPYP 156 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~dsav~--------~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~----~~vPv~ 156 (165)
+..+.++.|.+.||++++|....+. ...++.++++ ++.+|....-.|+...+.++.+ ...|+.
T Consensus 354 ~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ 428 (464)
T PRK11892 354 YALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQAFDYLDAPVL 428 (464)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHhCccccCCCeE
Confidence 4455688888889999988765542 3345566654 3556666666999999988887 367888
Q ss_pred EEeec
Q psy2575 157 CTFLL 161 (165)
Q Consensus 157 V~~~~ 161 (165)
-++--
T Consensus 429 ri~~~ 433 (464)
T PRK11892 429 RVTGK 433 (464)
T ss_pred EeccC
Confidence 76543
No 109
>PLN02187 rooty/superroot1
Probab=73.83 E-value=63 Score=28.99 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc-
Q psy2575 35 NPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD- 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d- 109 (165)
...++.|+++... .+...++++|.|.+..+..++.... ++.-+|++.+ |.+.+... .....|.++..++.
T Consensus 111 ~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~pGd~Vlv~~--P~y~~y~~--~~~~~g~~~~~~~l~ 185 (462)
T PLN02187 111 LPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA-RPNANILLPR--PGFPHYDA--RAAYSGLEVRKFDLL 185 (462)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc-CCCCEEEEeC--CCCccHHH--HHHHcCCEEEEEeCc
Confidence 4678899987754 2667788888887766655555433 3445666654 66555432 23456777665542
Q ss_pred --c-------hHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 --S-------AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 --s-------av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. .+...+. +..++++.-=. -+.|.++.+.=-..++-.|+++++++++
T Consensus 186 ~~~~~~~d~~~l~~~~~~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 186 PEKEWEIDLEGIEAIADENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred cccCCccCHHHHHHhcCCCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 1 1222222 22233332111 3445555555556778888888887764
No 110
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=73.68 E-value=22 Score=33.21 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=56.1
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEEEc----c-chHHHhch--hCCEEEEccceee-cCCC----------ee
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP----D-SAMFGLIS--RVNKIIIGTHTVM-ANGG----------LR 136 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~----d-sav~~~m~--~v~~VllGAd~V~-~nG~----------vv 136 (165)
+..+|+|+- .-++-|..+++.|.+.|.++++.. | .++...+. +.|.||=-|-... .+-. -+
T Consensus 379 ~~mkiLVtG-a~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 379 PSLKFLIYG-RTGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCceEEEEC-CCchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 445666663 346779999999999998885432 2 23444454 4677775542211 0111 36
Q ss_pred ehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 137 SVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 137 nk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
|..||..++-+|++++++++++.
T Consensus 458 N~~gt~~l~~a~~~~g~~~v~~S 480 (668)
T PLN02260 458 NVVGTLTLADVCRENGLLMMNFA 480 (668)
T ss_pred HhHHHHHHHHHHHHcCCeEEEEc
Confidence 88999999999999999987763
No 111
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=73.59 E-value=54 Score=29.34 Aligned_cols=113 Identities=15% Similarity=0.091 Sum_probs=64.9
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-H-HHHHHHhhcCCceEEEccc---hH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-H-ELAVSLAKSKIQTVLIPDS---AM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~-~la~~L~~~GI~v~~I~ds---av 112 (165)
.+...+.-+++....+.++|-|.+..+...|....+ ..-+|++.+ |.+.| . .+...+...|+++..++.. .+
T Consensus 66 ~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~-~GD~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l 142 (431)
T PRK08248 66 TDVFEKRIAALEGGIGALAVSSGQAAITYSILNIAS-AGDEIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENF 142 (431)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-CCCEEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHH
Confidence 344444444455545677777777666666655433 334677664 44433 2 3345677899999988743 33
Q ss_pred HHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+. +...|++- .---+.|.+.. + ..++-+|++++++++|
T Consensus 143 ~~ai~~~tklV~l~-sp~NPtG~v~d-i--~~I~~la~~~gi~vIv 184 (431)
T PRK08248 143 EAAITDKTKALFAE-TIGNPKGDVLD-I--EAVAAIAHEHGIPLIV 184 (431)
T ss_pred HHhcCCCCeEEEEE-CCCCCCCcccC-H--HHHHHHHHHcCCEEEE
Confidence 33443 34455542 11123344443 2 4688889999998876
No 112
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=73.58 E-value=64 Score=28.48 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=64.1
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH--HHHHHHhhcCCceEEEccc---hH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH--ELAVSLAKSKIQTVLIPDS---AM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~--~la~~L~~~GI~v~~I~ds---av 112 (165)
.+...+..+++....+.++|-|.+..+...|....+ +.-+|++.+ |.+.|- .+...+...|+++..++.. .+
T Consensus 59 ~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~-~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l 135 (418)
T TIGR01326 59 TDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQ-AGDNIVSSS--YLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEF 135 (418)
T ss_pred HHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC-CCCEEEEEC--CCcHHHHHHHHHHHHHcCcEEEEECCCCHHHH
Confidence 445555555566555677777766666666654443 334666653 555442 2345567789999988742 33
Q ss_pred HHhch-hCCEEEEcccee-ecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLIS-RVNKIIIGTHTV-MANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~-~v~~VllGAd~V-~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+. +...|++ +.. -+.|.+. . --.++-+|+++++++++
T Consensus 136 ~~~l~~~t~~V~l--e~p~NPtg~v~-d--l~~I~~la~~~~i~liv 177 (418)
T TIGR01326 136 EKAIDENTKAVFA--ETIGNPAINVP-D--IEAIAEVAHAHGVPLIV 177 (418)
T ss_pred HHhcCcCCeEEEE--ECCCCCCCeec-C--HHHHHHHHHHcCCEEEE
Confidence 33343 3445554 222 2233333 2 34678889999999876
No 113
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=73.51 E-value=9.8 Score=29.34 Aligned_cols=47 Identities=6% Similarity=-0.063 Sum_probs=28.9
Q ss_pred EEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 80 IVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 80 iV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
++.-|....+-.+.++.+++.|+++..|++..-..+-+.+|.++.-.
T Consensus 107 ~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 107 GISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 33334444444556777777777777777766666556677766543
No 114
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=73.30 E-value=5.8 Score=35.37 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=30.7
Q ss_pred chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 116 ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 116 m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
++++|.||.|==.+-.. ++..| ....+|..|++++|||+++|..
T Consensus 281 l~~ADlVITGEG~~D~Q-tl~GK-~p~~Va~~A~~~~vPviai~G~ 324 (375)
T TIGR00045 281 IKDADLVITGEGRLDRQ-SLMGK-APVGVAKRAKKYGVPVIAIAGS 324 (375)
T ss_pred hcCCCEEEECCCccccc-ccCCc-hHHHHHHHHHHhCCeEEEEecc
Confidence 34689888885443222 23333 5677888999999999999864
No 115
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=73.12 E-value=27 Score=29.34 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=16.5
Q ss_pred HHHHHHHHhhCCCcEEEEee
Q psy2575 141 THAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 141 T~~lAl~Ak~~~vPv~V~~~ 160 (165)
+.+.|.+|++.++||.+++-
T Consensus 213 ~~~ea~lA~~~gi~~~~i~~ 232 (272)
T PRK08202 213 TVPEVIVARHCGLKVLGISC 232 (272)
T ss_pred hHHHHHHHHHCCCcEEEEEE
Confidence 57888999999999988743
No 116
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=73.06 E-value=60 Score=27.92 Aligned_cols=113 Identities=11% Similarity=0.006 Sum_probs=60.4
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH-HH-HHHHhhcCCceEEEccc---hH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH-EL-AVSLAKSKIQTVLIPDS---AM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~-~l-a~~L~~~GI~v~~I~ds---av 112 (165)
.+...+..+++....+.+++-|.+..+...+....+ +.-+|++.. |.+.+. .+ ...+...|+++.++... .+
T Consensus 42 ~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~-~gd~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 118 (369)
T cd00614 42 VDALEKKLAALEGGEAALAFSSGMAAISTVLLALLK-AGDHVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEAL 118 (369)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcC-CCCEEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHH
Confidence 444444444555444666665555454555554433 333555543 444432 22 33456789999988654 34
Q ss_pred HHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...++ +...|++ +.+..-.+.+.. --.++-+|++++++++|
T Consensus 119 ~~~i~~~~~~v~~--e~~~np~g~~~d--l~~i~~la~~~g~~liv 160 (369)
T cd00614 119 EAAIKPETKLVYV--ESPTNPTLKVVD--IEAIAELAHEHGALLVV 160 (369)
T ss_pred HHhcCCCCeEEEE--ECCCCCCCeecC--HHHHHHHHHHcCCEEEE
Confidence 34443 3334443 333322233333 23688889999999887
No 117
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=72.92 E-value=32 Score=26.46 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 90 GHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 90 G~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
=.++++.+++.|+++..|+++.-..+-+.+|.++.-.
T Consensus 91 ~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~ 127 (179)
T cd05005 91 VVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIP 127 (179)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 3566888999999999999988888878899887543
No 118
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=72.77 E-value=61 Score=29.15 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=59.7
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHH-HHHHhhcCCceEEEcc-c---h
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HEL-AVSLAKSKIQTVLIPD-S---A 111 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~l-a~~L~~~GI~v~~I~d-s---a 111 (165)
.+.+.+..+++..-...+++-+.+..+...|....+ +.-+|++..+ .+.| ..+ ...|.+.|+++.++.| . .
T Consensus 71 ~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~-~Gd~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~ 147 (436)
T PRK07812 71 QDVVEQRIAALEGGVAALLLASGQAAETFAILNLAG-AGDHIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDA 147 (436)
T ss_pred HHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC-CCCEEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHH
Confidence 344444444444433455555555454545544433 3446777654 2333 223 3456778999999853 2 2
Q ss_pred HHHhchhCCEEEEccceee-cCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 112 MFGLISRVNKIIIGTHTVM-ANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 112 v~~~m~~v~~VllGAd~V~-~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+...+..-+++++ .+.+. +.| .+..+ -.++-+||++++|++|=
T Consensus 148 l~~ai~~~tklV~-ie~~sNp~G-~v~Dl--~~I~~la~~~gi~liVD 191 (436)
T PRK07812 148 WRAAVRPNTKAFF-AETISNPQI-DVLDI--PGVAEVAHEAGVPLIVD 191 (436)
T ss_pred HHHhCCCCCeEEE-EECCCCCCC-eecCH--HHHHHHHHHcCCEEEEE
Confidence 2323332234443 22322 233 33333 45889999999998873
No 119
>PRK07550 hypothetical protein; Provisional
Probab=72.74 E-value=60 Score=27.77 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHHhcc----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 34 ANPTSDTAPSQACEH----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
..+.++.++++..+. +...++++|-|.+..+..++. +.-+..-+|++.+ |.+.+.. ..+...|+++..++.
T Consensus 69 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~-~l~~~gd~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 69 LPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMV-TLAGAGDEVILPL--PWYFNHK--MWLDMLGIRPVYLPC 143 (386)
T ss_pred CHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHH-HhcCCCCEEEEcC--CCCcchH--HHHHhcCCEEEEEec
Confidence 456788888776543 566778888776655444443 3333444555553 6654433 234568887776663
Q ss_pred c---h-------HHHhch-hCCEEEEc-cceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 S---A-------MFGLIS-RVNKIIIG-THTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 s---a-------v~~~m~-~v~~VllG-Ad~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. . +...+. +...|++- .. -+.|.++...=-..++-.|+++++++++
T Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~--NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 144 DEGPGLLPDPAAAEALITPRTRAIALVTPN--NPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred CCCcCCCCCHHHHHHHhcccCcEEEEeCCC--CCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 2 1 122222 23333321 11 2335555544456788889999988764
No 120
>PRK06225 aspartate aminotransferase; Provisional
Probab=72.69 E-value=60 Score=27.73 Aligned_cols=117 Identities=9% Similarity=0.017 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc-c--
Q psy2575 34 ANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD-S-- 110 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d-s-- 110 (165)
....++.|+++- -+.+.++++|.|.+..+...+..... ..-+|++.+ |.+... ...+...|..+..++. .
T Consensus 68 ~~~lr~~ia~~l--~~~~~~v~~~~g~t~al~~~~~~~~~-~gd~vl~~~--p~y~~~--~~~~~~~g~~~~~v~~~~~~ 140 (380)
T PRK06225 68 FPELRELILKDL--GLDDDEALITAGATESLYLVMRAFLS-PGDNAVTPD--PGYLII--DNFASRFGAEVIEVPIYSEE 140 (380)
T ss_pred hHHHHHHHHHhc--CCCCCcEEEeCCHHHHHHHHHHHhcC-CCCEEEEcC--CCCcch--HHHHHHhCceEEeecccccc
Confidence 356788888753 14556788888877665555554432 223466554 554322 2344567777776652 1
Q ss_pred --------hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 --------AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 --------av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+...+..-.++++-..--.+.|.++.+-=-..++-.|+++++++++
T Consensus 141 ~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~ 195 (380)
T PRK06225 141 CNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLH 195 (380)
T ss_pred CCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEE
Confidence 11122221122222112222334444433345577888999998876
No 121
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=72.55 E-value=64 Score=28.01 Aligned_cols=113 Identities=9% Similarity=-0.004 Sum_probs=58.4
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHH-HHHHhhcCCceEEEccch---H
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HEL-AVSLAKSKIQTVLIPDSA---M 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~l-a~~L~~~GI~v~~I~dsa---v 112 (165)
.+...+..+++..-.+.+++-|.+..+...|....+ ..-+|++. +|.+.+ ..+ ...+...|+++.+++... +
T Consensus 56 ~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~-~Gd~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l 132 (380)
T TIGR01325 56 VAAFEERIAALEGAERAVATATGMSAIQAALMTLLQ-AGDHVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAW 132 (380)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-CCCEEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHH
Confidence 334444444455444566665555555555543333 33456664 333322 233 445677899999887532 3
Q ss_pred HHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+. +...|++. .---+.|.+.. -..++-+||+++++++|
T Consensus 133 ~~~i~~~tklV~le-~p~np~g~~~d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 133 EAAVKPNTKLVFVE-TPSNPLGELVD---IAALAELAHAIGALLVV 174 (380)
T ss_pred HHhcCCCceEEEEE-CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 23332 33333332 11112333322 35677888999999886
No 122
>PRK05443 polyphosphate kinase; Provisional
Probab=72.54 E-value=15 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHh-CCceEEEEecCCCCCh--HHHHHHHHhhcCCceEEEc
Q psy2575 59 GYSKIVELFLKNAAQ-HRKFQCIVMENSPENK--GHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 59 g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~e--G~~la~~L~~~GI~v~~I~ 108 (165)
+..+.+.+.|..|++ |++.+|+|-...+..+ ....++.|.++|+.|.|-.
T Consensus 377 ~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~ 429 (691)
T PRK05443 377 SKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGV 429 (691)
T ss_pred cCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEcc
Confidence 444556666666666 7888877665544433 3556999999999996643
No 123
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=72.49 E-value=31 Score=28.26 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHh-CCceEEEEecCCCC---ChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeee
Q psy2575 62 KIVELFLKNAAQ-HRKFQCIVMENSPE---NKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRS 137 (165)
Q Consensus 62 ~tV~~~L~~A~~-~~~f~ViV~Es~P~---~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvn 137 (165)
.....+|..+.+ ....+++|=+ -|. .....+...+....-.+.+..+..+..+|+++|.|+.-.
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~Vvtin----------- 207 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDAVVTIN----------- 207 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCEEEEEC-----------
Confidence 356677777776 4467776654 342 122233344433223344556778899999999887543
Q ss_pred hhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 138 VCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 138 k~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
..+++=|-.+++||++++..
T Consensus 208 ----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 208 ----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred ----CHHHHHHHHcCCceEEecCc
Confidence 23667788899999998653
No 124
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=72.45 E-value=47 Score=28.64 Aligned_cols=118 Identities=9% Similarity=0.046 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CC-------------ceEEEEecCCCCCh--HHHHHHHHh
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HR-------------KFQCIVMENSPENK--GHELAVSLA 98 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~-------------~f~ViV~Es~P~~e--G~~la~~L~ 98 (165)
....+++.+..+++......++|-|.+..+...|....+ |. ..+|++. +|.+. |......+.
T Consensus 44 ~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~--~~~~~~~~~~~~~~~~ 121 (363)
T TIGR01437 44 KELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLP--KGHNVDYGAPVETMVR 121 (363)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEE--CccchhcCCchHHHHH
Confidence 344666666666776655677777777766666655443 32 2377774 34332 112233444
Q ss_pred hcCCceEEEc------cchHHHhchhCCEEEEccce-eecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 99 KSKIQTVLIP------DSAMFGLISRVNKIIIGTHT-VMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 99 ~~GI~v~~I~------dsav~~~m~~v~~VllGAd~-V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..|..+.++. ...+...+..=++.++-... -...|.+.. . -.++-+|+++++|+++
T Consensus 122 ~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~-~--~~i~~~a~~~gi~viv 184 (363)
T TIGR01437 122 LGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS-V--EDAAQVAQEHNLPLIV 184 (363)
T ss_pred hcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC-H--HHHHHHHHHcCCeEEE
Confidence 5665555442 22333344322332221100 012343333 2 4689999999999987
No 125
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=72.18 E-value=24 Score=29.36 Aligned_cols=63 Identities=10% Similarity=0.147 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCceEEEccchHHH----hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 92 ELAVSLAKSKIQTVLIPDSAMFG----LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~dsav~~----~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
.++..|...|+++....|..... .+.+=|.+++-+. .|.- --+..++-.||..+.|+++++..
T Consensus 157 ~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~----sG~t---~~~~~~~~~ak~~g~~ii~IT~~ 223 (292)
T PRK11337 157 DVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSH----SGRT---SDVIEAVELAKKNGAKIICITNS 223 (292)
T ss_pred HHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeC----CCCC---HHHHHHHHHHHHCCCeEEEEeCC
Confidence 35566667788877777755432 3445566655322 2322 12667889999999999998753
No 126
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=71.79 E-value=62 Score=28.33 Aligned_cols=112 Identities=12% Similarity=0.023 Sum_probs=60.6
Q ss_pred HHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHHHHHHhhcCCceEEEc--cchHHHh
Q psy2575 39 DTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HELAVSLAKSKIQTVLIP--DSAMFGL 115 (165)
Q Consensus 39 ~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~la~~L~~~GI~v~~I~--dsav~~~ 115 (165)
+...+.-+++....+.+++-|....+...|....+ ..-+|++. .|.+.+ ..+.+.+...|+++.... ...+...
T Consensus 56 ~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~-~GD~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~ 132 (385)
T PRK08574 56 RPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLK-AGDRVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEA 132 (385)
T ss_pred HHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC-CCCEEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHh
Confidence 33444444555555666665544444444443332 33456654 344444 345555677898887653 2344444
Q ss_pred chh-CCEEEEcccee-ecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 116 ISR-VNKIIIGTHTV-MANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 116 m~~-v~~VllGAd~V-~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+.+ -+++++ .+.. .+.|.+.. . -.++-+|+++++++++
T Consensus 133 i~~~~tklV~-ie~p~NPtG~v~d-l--~~I~~la~~~gi~liv 172 (385)
T PRK08574 133 IKEGRTKLVF-IETMTNPTLKVID-V--PEVAKAAKELGAILVV 172 (385)
T ss_pred cCccCceEEE-EECCCCCCCEecC-H--HHHHHHHHHcCCEEEE
Confidence 543 233443 2332 34454444 2 3778889999999986
No 127
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=71.76 E-value=17 Score=32.06 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=44.9
Q ss_pred eEEEEecCCCCChHHHHHHHHhhcCCceE-EEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcE
Q psy2575 77 FQCIVMENSPENKGHELAVSLAKSKIQTV-LIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPY 155 (165)
Q Consensus 77 f~ViV~Es~P~~eG~~la~~L~~~GI~v~-~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv 155 (165)
.+|.++-.-|...-.++.+.|.+.|+++. .++|+....+ ++... +..++ ++...+....-.+.++|++|+
T Consensus 156 ~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d~~~~~~-~~~~~----a~~~~----~~~~~~~~~A~~Le~r~giP~ 226 (396)
T cd01979 156 RSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPPRRYTDL-PVIGP----GTYVL----GIQPFLSRTATTLMRRRKCKL 226 (396)
T ss_pred CceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCCCChHHh-hccCc----ceEEE----EeChhHHHHHHHHHHhcCCCc
Confidence 44444433443344778899999999996 7787654433 32211 10111 123334455667788999998
Q ss_pred EEEeecccC
Q psy2575 156 PCTFLLNIG 164 (165)
Q Consensus 156 ~V~~~~~~~ 164 (165)
+. .++.+|
T Consensus 227 ~~-~~~P~G 234 (396)
T cd01979 227 LS-APFPIG 234 (396)
T ss_pred cc-CCcCcC
Confidence 87 334455
No 128
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=71.34 E-value=39 Score=30.25 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=19.1
Q ss_pred eehhcHHHHHHHHhhCCCcEEEE
Q psy2575 136 RSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 136 vnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.|..||..+.-+|+++++.++.+
T Consensus 210 ~Nv~gT~nLleaa~~~g~r~V~~ 232 (436)
T PLN02166 210 TNVMGTLNMLGLAKRVGARFLLT 232 (436)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEE
Confidence 67789999999999998876654
No 129
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=71.23 E-value=35 Score=29.90 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCceEEEccch--------HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhC----CCcEEE
Q psy2575 90 GHELAVSLAKSKIQTVLIPDSA--------MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHY----SIPYPC 157 (165)
Q Consensus 90 G~~la~~L~~~GI~v~~I~dsa--------v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~----~vPv~V 157 (165)
..+.++.|++.||++++|.... +...+++.+.|++ .+++....-.|+.....++.+. ..|+.-
T Consensus 248 aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~Ivv-----vEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~r 322 (355)
T PTZ00182 248 ALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVI-----VHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKR 322 (355)
T ss_pred HHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEE-----EEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEE
Confidence 3344566666676666654332 3344566766654 4555666667888888887775 678876
Q ss_pred Eee
Q psy2575 158 TFL 160 (165)
Q Consensus 158 ~~~ 160 (165)
++-
T Consensus 323 i~~ 325 (355)
T PTZ00182 323 VCG 325 (355)
T ss_pred eCC
Confidence 653
No 130
>PRK07340 ornithine cyclodeaminase; Validated
Probab=71.04 E-value=35 Score=29.04 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=60.8
Q ss_pred HHHHHhccc--CCCCEEEEecCCHHHHHHHHHHHhCCc-eEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhch
Q psy2575 41 APSQACEHI--HSNEIILTLGYSKIVELFLKNAAQHRK-FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS 117 (165)
Q Consensus 41 Ia~~a~~~I--~~~~~ILT~g~S~tV~~~L~~A~~~~~-f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~ 117 (165)
+...+.+++ .+..+++.+|.+..-...+.....-+. -+|+|..-.| ..-..++..+.+.++++. .+ .....+.
T Consensus 112 ~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~-~~a~~~a~~~~~~~~~~~--~~-~~~~av~ 187 (304)
T PRK07340 112 VSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTA-ASAAAFCAHARALGPTAE--PL-DGEAIPE 187 (304)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCH-HHHHHHHHHHHhcCCeeE--EC-CHHHHhh
Confidence 445556666 356799999998776666655543222 2456664333 345678888887777766 22 2344567
Q ss_pred hCCEEEEccc-------eeecCCCeeehhcHH
Q psy2575 118 RVNKIIIGTH-------TVMANGGLRSVCGTH 142 (165)
Q Consensus 118 ~v~~VllGAd-------~V~~nG~vvnk~GT~ 142 (165)
++|.|+...- ..+.-|..++-+|++
T Consensus 188 ~aDiVitaT~s~~Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 188 AVDLVVTATTSRTPVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred cCCEEEEccCCCCceeCccCCCCCEEEecCCC
Confidence 8988884221 124667778888864
No 131
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=70.84 E-value=15 Score=32.84 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=43.2
Q ss_pred EEEEecCCCCChHHHHHHHHhhcCCceE-EEccchHHHh--chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCc
Q psy2575 78 QCIVMENSPENKGHELAVSLAKSKIQTV-LIPDSAMFGL--ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIP 154 (165)
Q Consensus 78 ~ViV~Es~P~~eG~~la~~L~~~GI~v~-~I~dsav~~~--m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vP 154 (165)
+|.++-.-|...-.++.+-|.+.|+++. .++++....+ +.....+ -++...++...-.+ +++++|
T Consensus 168 ~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~~~~~~~~-----------~~~~~~~~~~A~~L-~~~GiP 235 (427)
T PRK02842 168 SLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPARRFTELPAIGPGTVV-----------ALAQPFLSDTARAL-RERGAK 235 (427)
T ss_pred cEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCCccHHHHhhcCcCcEE-----------EEeCHHHHHHHHHH-HHcCCc
Confidence 3444333333223778899999999985 8888655432 1121221 12344455544455 889999
Q ss_pred EEEEeecccCC
Q psy2575 155 YPCTFLLNIGI 165 (165)
Q Consensus 155 v~V~~~~~~~~ 165 (165)
++.+ ++.+|+
T Consensus 236 ~~~~-~~P~G~ 245 (427)
T PRK02842 236 VLTA-PFPLGP 245 (427)
T ss_pred cccC-CCCcCh
Confidence 8875 455664
No 132
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=70.72 E-value=26 Score=32.00 Aligned_cols=88 Identities=19% Similarity=0.224 Sum_probs=56.3
Q ss_pred CCEEEEecCCH---HHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccce
Q psy2575 52 NEIILTLGYSK---IVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHT 128 (165)
Q Consensus 52 ~~~ILT~g~S~---tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~ 128 (165)
+..|+++|... .+.++|. ++..+|++.|.+|.-++.... .+...||++..-.... .....+|.|+... .
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~----~~G~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~SP-G 78 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLL----KLGAEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVKSP-G 78 (448)
T ss_pred CCEEEEEecccccHHHHHHHH----HCCCeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEECC-C
Confidence 77888876554 3344444 245899999999988555444 6667787776654433 4455678887776 2
Q ss_pred eecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 129 VMANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 129 V~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
| ..++++...|+..++|++
T Consensus 79 i---------~~~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 79 I---------PPTHPLVEAAKAAGIEII 97 (448)
T ss_pred C---------CCCCHHHHHHHHcCCcEE
Confidence 2 233456666777777765
No 133
>PLN02214 cinnamoyl-CoA reductase
Probab=70.62 E-value=65 Score=27.30 Aligned_cols=109 Identities=13% Similarity=0.107 Sum_probs=56.4
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEE-----ccchHHHhchhCCEEEEc
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLI-----PDSAMFGLISRVNKIIIG 125 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I-----~dsav~~~m~~v~~VllG 125 (165)
.+.+|++.|.+.-+=..|......+..+|.++...+..........+...+-+++++ ....+..+++.+|.|+--
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 88 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHT 88 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEe
Confidence 456788888766554444333323446666554333211111122332211123333 123455567778877766
Q ss_pred cceeecCC---CeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 126 THTVMANG---GLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 126 Ad~V~~nG---~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
|-....+- --.|..||..+.-+|+.++++-+|..
T Consensus 89 A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 89 ASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 53322110 11356799999999999887644443
No 134
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=70.12 E-value=17 Score=27.66 Aligned_cols=32 Identities=3% Similarity=-0.052 Sum_probs=16.0
Q ss_pred HHHHHhhcCCceEEEccchHHHhchhCCEEEE
Q psy2575 93 LAVSLAKSKIQTVLIPDSAMFGLISRVNKIII 124 (165)
Q Consensus 93 la~~L~~~GI~v~~I~dsav~~~m~~v~~Vll 124 (165)
.++.+++.|+++..|+...-..+-+.+|.++.
T Consensus 98 ~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~ 129 (154)
T TIGR00441 98 AIEAAKDKGMKTITLAGKDGGKMAGLADIELR 129 (154)
T ss_pred HHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 34444455555555555444444445565554
No 135
>PRK07683 aminotransferase A; Validated
Probab=70.11 E-value=71 Score=27.50 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHhcc----cCCC-CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc
Q psy2575 34 ANPTSDTAPSQACEH----IHSN-EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~----I~~~-~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ 108 (165)
....++.+++.-... +.+. ++++|-|.+..+..++....+ ..-+|++. .|.+.+...+ +...|.++.+++
T Consensus 67 ~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~ 141 (387)
T PRK07683 67 LLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILE-PGTEVILP--APIYPGYEPI--IRLCGAKPVFID 141 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCC-CCCEEEEc--CCCccchHHH--HHHcCCEEEEee
Confidence 366788888765322 3444 688888777655544443322 33355554 5555543332 344688888876
Q ss_pred cch---------HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 109 DSA---------MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 109 dsa---------v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
... +...+..-+++++=...--+.|.+....=-..++-.|+++++++++
T Consensus 142 ~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 142 TRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred cCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 432 2222222223332122222344444444446678888999887764
No 136
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=69.79 E-value=31 Score=32.53 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=57.5
Q ss_pred cCCCCEEEEecCCHHH-HHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh-----cC------CceEEE---ccchHH
Q psy2575 49 IHSNEIILTLGYSKIV-ELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK-----SK------IQTVLI---PDSAMF 113 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV-~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~-----~G------I~v~~I---~dsav~ 113 (165)
.++|.+|++.|.+.-+ ..+...+.+ +.++|+++...+. ....++..+.+ .| +.+... ....+.
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk-~G~~Vval~Rn~e-kl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLK-LGFRVRAGVRSAQ-RAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeCCHH-HHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 3478899999887655 334444433 4567776643322 22334444332 12 222221 122344
Q ss_pred HhchhCCEEEEccceeecC------CCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 114 GLISRVNKIIIGTHTVMAN------GGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 114 ~~m~~v~~VllGAd~V~~n------G~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
..+.++|.||..+-....+ -.-+|..|+..+.-+|+..++.-+|..
T Consensus 155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~V 206 (576)
T PLN03209 155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILV 206 (576)
T ss_pred HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567788777544221100 011356789999999988887655543
No 137
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.74 E-value=60 Score=29.21 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=50.6
Q ss_pred CCEEEEecCCH---HHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccce
Q psy2575 52 NEIILTLGYSK---IVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHT 128 (165)
Q Consensus 52 ~~~ILT~g~S~---tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~ 128 (165)
|..|+++|.+. .+.++|. ++..+|++.|.++...-.. ..+|.+ ++.......+ ...+.++|.|+.+.-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~----~~g~~v~~~d~~~~~~~~~-~~~l~~-~~~~~~~~~~--~~~~~~~d~vV~Spg- 78 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALR----AHLPAQALTLFCNAVEARE-VGALAD-AALLVETEAS--AQRLAAFDVVVKSPG- 78 (468)
T ss_pred CCEEEEEccchhhHHHHHHHH----HcCCEEEEEcCCCcccchH-HHHHhh-cCEEEeCCCC--hHHccCCCEEEECCC-
Confidence 56788887664 3344444 3567899999877644222 334766 4333333322 234567888887762
Q ss_pred eecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 129 VMANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 129 V~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
|-+ +.+.-..|++.++|++
T Consensus 79 I~~---------~~p~~~~a~~~~i~i~ 97 (468)
T PRK04690 79 ISP---------YRPEALAAAARGTPFI 97 (468)
T ss_pred CCC---------CCHHHHHHHHcCCcEE
Confidence 222 2356666777777776
No 138
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=69.54 E-value=14 Score=30.78 Aligned_cols=96 Identities=13% Similarity=0.239 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHh--CCceEEEEecCCC----CChHHHHHHHHhh-cCCc
Q psy2575 35 NPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSP----ENKGHELAVSLAK-SKIQ 103 (165)
Q Consensus 35 ~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P----~~eG~~la~~L~~-~GI~ 103 (165)
+...+.+++.|++ ++++++ ++-+||++|+.++...... .++.+|+=+-... ..+.-.+++.|++ .|-+
T Consensus 32 ~~~~~~l~~~aA~~L~~~l~~~~-~iGv~wG~Tl~~~~~~l~~~~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~g~~ 110 (255)
T PF04198_consen 32 EDILESLGEAAAEYLSELLKDGD-VIGVGWGRTLYAVANHLPPKSLPNVTVVPLIGGVGNSNSYQANEIARRLAEKLGGK 110 (255)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTE-EEEE-TSHHHHHHHHTS--SSSSCEEEEESBSBTTTSSGGSHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC-EEEEcchHHHHHHHHhcCccCCCCcEEEECCCCCCCCCCcCHHHHHHHHHHHhCCc
Confidence 4556666666655 456777 6677999999998886655 3556655332221 2445555666654 3433
Q ss_pred eEEEc-----cchHH-H-------------hchhCCEEEEccceeec
Q psy2575 104 TVLIP-----DSAMF-G-------------LISRVNKIIIGTHTVMA 131 (165)
Q Consensus 104 v~~I~-----dsav~-~-------------~m~~v~~VllGAd~V~~ 131 (165)
..+++ ++.-. . ..+++|.+++|.-.+.+
T Consensus 111 ~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~~~~~~dial~giG~~~~ 157 (255)
T PF04198_consen 111 YYFLPAPAFVDSPELRDALLAEPSIREVLDLARKADIALVGIGSPSS 157 (255)
T ss_dssp EE---SBSB-SSHHHHHHHHTSHHHHHHHHHHCT-SEEEEEEEEHHH
T ss_pred EEEEeCCccCCCHHHHHHHHhChHHHHHHHHHHhCCEEEEecCCCCC
Confidence 33322 22221 1 23469999999755544
No 139
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=69.43 E-value=13 Score=31.32 Aligned_cols=92 Identities=17% Similarity=0.102 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcccCCCCEEEEe--cCCHHHHHHHHHHHhCCceEEEE----------------------ecCCC-CChHH
Q psy2575 37 TSDTAPSQACEHIHSNEIILTL--GYSKIVELFLKNAAQHRKFQCIV----------------------MENSP-ENKGH 91 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~--g~S~tV~~~L~~A~~~~~f~ViV----------------------~Es~P-~~eG~ 91 (165)
..+.-.++++++|.+-+.|..+ |.|..|-..+......-.++|.. .--+| -.+-.
T Consensus 115 l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i 194 (281)
T COG1737 115 LDEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIV 194 (281)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHH
Confidence 3566667788888888877665 45556655554443322222222 22122 23445
Q ss_pred HHHHHHhhcCCceEEEccchHHHhchhCCEEEEccce
Q psy2575 92 ELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHT 128 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~ 128 (165)
+.++..++.|+++..|+++...-+-+.+|.++.....
T Consensus 195 ~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~ 231 (281)
T COG1737 195 EAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVA 231 (281)
T ss_pred HHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccCc
Confidence 6688899999999999999999999999999987544
No 140
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=69.39 E-value=62 Score=26.56 Aligned_cols=63 Identities=16% Similarity=-0.015 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCceEEEccchHHH----hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 92 ELAVSLAKSKIQTVLIPDSAMFG----LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~dsav~~----~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
.+...|...|+++....|..... .+.+=|.+|+- .-.|. .--+..++-.||+.+.|+++++..
T Consensus 145 ~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~i----S~sg~---~~~~~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 145 NFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAI----SYSGE---RRELNLAADEALRVGAKVLAITGF 211 (278)
T ss_pred HHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEE----cCCCC---CHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45666777788877766654332 34555655533 22332 122556788999999999998764
No 141
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=69.24 E-value=19 Score=31.98 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCCceE-EEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecccCC
Q psy2575 90 GHELAVSLAKSKIQTV-LIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLNIGI 165 (165)
Q Consensus 90 G~~la~~L~~~GI~v~-~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~~~~ 165 (165)
-+++-+.|.+.|+++. .++|+.+.. ++.. -++..+ .++.+.+....-.+-++|++|++.+ ++-||+
T Consensus 167 ~~elk~lL~~~Gi~v~~~lpd~~~~e-~~~~----~~~~~~----~~~~~~~~~~A~~Le~~~GiP~~~~-~~PiGi 233 (407)
T TIGR01279 167 ADQLRLELKQLGIPVVGFLPASHFTE-LPVI----GPGTVV----APLQPYLSDTATTLRRERGAKVLSA-PFPFGP 233 (407)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCcch-hhhc----CCCeEE----EEechHHHHHHHHHHHHhCCccccC-CCCcCH
Confidence 3677888899999998 888875443 2211 011111 1355566665556777899998765 455653
No 142
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=69.06 E-value=14 Score=27.61 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=24.4
Q ss_pred HHHHHhcc--cCCCCEEEEec---CCHHHHHHHHHHHhCCceEEEE
Q psy2575 41 APSQACEH--IHSNEIILTLG---YSKIVELFLKNAAQHRKFQCIV 81 (165)
Q Consensus 41 Ia~~a~~~--I~~~~~ILT~g---~S~tV~~~L~~A~~~~~f~ViV 81 (165)
.+++.... +++||+++.+| +|+.+.+.+..|++ +..+|+.
T Consensus 91 ~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~-~G~~vIa 135 (138)
T PF13580_consen 91 FARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKE-RGMKVIA 135 (138)
T ss_dssp HHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHH-TT-EEEE
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCEEEE
Confidence 34444445 89999999985 56788888888876 4555554
No 143
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=69.01 E-value=22 Score=27.88 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCC-CeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANG-GLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG-~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
..+++.|++.|++++++.... -++++|.++++--....+- ..+...+....-.-+...++|++-+|-
T Consensus 12 ~~~~~~l~~~g~~v~v~~~~~---~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~ 79 (198)
T cd01748 12 RSVANALERLGAEVIITSDPE---EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICL 79 (198)
T ss_pred HHHHHHHHHCCCeEEEEcChH---HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECH
Confidence 467899999999999988643 2567888887531111000 001122444444444556899998773
No 144
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=69.00 E-value=60 Score=27.80 Aligned_cols=103 Identities=16% Similarity=0.058 Sum_probs=64.8
Q ss_pred CCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceee
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVM 130 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~ 130 (165)
-|..+..-....|...|..+.+ +.+.-|++.+..+..+.+++.+..++.|+. ++-.+.++.+-+.......-.....
T Consensus 66 ~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gir--vlGPNc~Gi~~~~~~~~~~~~~~~~ 143 (291)
T PRK05678 66 ANASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTR--LIGPNCPGIITPGECKIGIMPGHIH 143 (291)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE--EECCCCCcccccccceeeecCCCCC
Confidence 3666666566677777777766 667777788877765566787777777754 4555555555444332222222223
Q ss_pred cCC--CeeehhcHHHHHHH--HhhCCCcEE
Q psy2575 131 ANG--GLRSVCGTHAVALA--AQHYSIPYP 156 (165)
Q Consensus 131 ~nG--~vvnk~GT~~lAl~--Ak~~~vPv~ 156 (165)
.-| ++++..|+...+++ |++.++.|-
T Consensus 144 ~~G~valiSQSGal~~~~~~~~~~~giG~s 173 (291)
T PRK05678 144 KKGRVGVVSRSGTLTYEAVAQLTDLGFGQS 173 (291)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 345 57899998877766 666777654
No 145
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=68.84 E-value=32 Score=27.96 Aligned_cols=34 Identities=3% Similarity=0.047 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
+.+++.|++.|+++.+++.... .++++|.+++.-
T Consensus 15 ~~~~~al~~~G~~~~~i~~~~~--~l~~~d~lilpG 48 (227)
T TIGR01737 15 RDTVYALRLLGVDAEIVWYEDG--SLPDYDGVVLPG 48 (227)
T ss_pred HHHHHHHHHCCCeEEEEecCCC--CCCCCCEEEECC
Confidence 5678999999999988875532 267788877764
No 146
>PLN02828 formyltetrahydrofolate deformylase
Probab=68.67 E-value=39 Score=28.72 Aligned_cols=73 Identities=11% Similarity=0.171 Sum_probs=43.9
Q ss_pred EEEEecCCHHHHHHHHHHHhCC-ceEEEEec-CCCCChHHHHHHHHhhcCCceEEEccc-------hHHHhchhCCEEEE
Q psy2575 54 IILTLGYSKIVELFLKNAAQHR-KFQCIVME-NSPENKGHELAVSLAKSKIQTVLIPDS-------AMFGLISRVNKIII 124 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~-~f~ViV~E-s~P~~eG~~la~~L~~~GI~v~~I~ds-------av~~~m~~v~~Vll 124 (165)
.||.-+.+++++.+|...+++. +.+|..+= ..|...+..+.+...+.|||+.+++.. .+...+.++|.+++
T Consensus 74 avlvSg~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVL 153 (268)
T PLN02828 74 AVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVL 153 (268)
T ss_pred EEEEcCCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 4566678888888888766642 34433322 232222333444456789999987642 44556667898887
Q ss_pred cc
Q psy2575 125 GT 126 (165)
Q Consensus 125 GA 126 (165)
..
T Consensus 154 Ag 155 (268)
T PLN02828 154 AR 155 (268)
T ss_pred ee
Confidence 63
No 147
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=68.11 E-value=54 Score=28.01 Aligned_cols=102 Identities=14% Similarity=0.029 Sum_probs=64.3
Q ss_pred CEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeec
Q psy2575 53 EIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMA 131 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~ 131 (165)
|..+..-....|...+..+.+ +.+.=|++.+..+....+++.+.-+++|+ .++-.+.++.+-+...+...-+.....
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi--rilGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT--RLIGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCceEEcccccceeeccccCCC
Confidence 677776667788888877776 66677777777766655677777777764 445555555544443322222222333
Q ss_pred CC--CeeehhcHHHHHHH--HhhCCCcEE
Q psy2575 132 NG--GLRSVCGTHAVALA--AQHYSIPYP 156 (165)
Q Consensus 132 nG--~vvnk~GT~~lAl~--Ak~~~vPv~ 156 (165)
.| ++++..|+...+++ +++.++.|-
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S 171 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQS 171 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 45 47999998777765 677777664
No 148
>PRK15482 transcriptional regulator MurR; Provisional
Probab=67.97 E-value=12 Score=31.12 Aligned_cols=51 Identities=12% Similarity=-0.065 Sum_probs=39.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 76 KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 76 ~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
..-+++.-++-..+-.++++..++.|+++..|+++....+-+.+|.+|.-.
T Consensus 184 Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~ 234 (285)
T PRK15482 184 DVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTV 234 (285)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcC
Confidence 344444445555566788999999999999999998888888899988754
No 149
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.88 E-value=76 Score=28.02 Aligned_cols=72 Identities=10% Similarity=0.122 Sum_probs=43.2
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH---HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhC
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM---FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHY 151 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav---~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~ 151 (165)
+..+|.+.|.++...=......|.+.|+.+..-.+... .....+.|.|++++- +-.+ .+.-..|++.
T Consensus 22 ~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~g-i~~~---------~~~~~~a~~~ 91 (459)
T PRK02705 22 QGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPG-IPWD---------HPTLVELRER 91 (459)
T ss_pred CCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCC-CCCC---------CHHHHHHHHc
Confidence 45789999988765434455668888988765433321 124567888888553 3222 3444455555
Q ss_pred CCcEE
Q psy2575 152 SIPYP 156 (165)
Q Consensus 152 ~vPv~ 156 (165)
++|++
T Consensus 92 ~i~v~ 96 (459)
T PRK02705 92 GIEVI 96 (459)
T ss_pred CCcEE
Confidence 55554
No 150
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=67.86 E-value=16 Score=25.89 Aligned_cols=60 Identities=5% Similarity=0.023 Sum_probs=39.2
Q ss_pred HHHHhhcCCceEEEcc--chHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 94 AVSLAKSKIQTVLIPD--SAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 94 a~~L~~~GI~v~~I~d--sav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
-+.+.+.|+++++..- +.+.....++|.++++++.-+.- -.+--.+..+++||.++-+..
T Consensus 24 ~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~---------~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 24 NKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYML---------PDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHH---------HHHHHHhhhcCCCEEEeChhh
Confidence 4445567887665544 34555678899999998764321 124455677889999876544
No 151
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=67.85 E-value=24 Score=32.22 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=92.3
Q ss_pred ccchhhHHHhhhhccCCccccCChHHHHHHHHHHhcccCCCCEEEEec-CC-HHHHHHHHHHHh-C-CceEEEEecCCCC
Q psy2575 12 DDNYQESLHKLVVSSDDEATDFANPTSDTAPSQACEHIHSNEIILTLG-YS-KIVELFLKNAAQ-H-RKFQCIVMENSPE 87 (165)
Q Consensus 12 ~~~~~~sL~~~~~~~~~~~~d~~~~~~~~Ia~~a~~~I~~~~~ILT~g-~S-~tV~~~L~~A~~-~-~~f~ViV~Es~P~ 87 (165)
.+++.+++.+.+. ++. |.-.+..++.+-+-..+++-.|..++.|- || ..|+.|...+.+ | .-|+++=.=..|+
T Consensus 49 GGATFDaciRfLn-EDP--WeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~R 125 (472)
T COG5016 49 GGATFDACIRFLN-EDP--WERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVR 125 (472)
T ss_pred CCccHHHHHHHhc-CCH--HHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchh
Confidence 5677889999998 433 66667778888877888888898888863 44 477889999888 4 4577763323332
Q ss_pred ChHHHHHHHHhhcCCceEEE------ccchHHHhchhCC-EEEEccceeec--CCCeeehhcHHHHHHHHhh-CCCcEEE
Q psy2575 88 NKGHELAVSLAKSKIQTVLI------PDSAMFGLISRVN-KIIIGTHTVMA--NGGLRSVCGTHAVALAAQH-YSIPYPC 157 (165)
Q Consensus 88 ~eG~~la~~L~~~GI~v~~I------~dsav~~~m~~v~-~VllGAd~V~~--nG~vvnk~GT~~lAl~Ak~-~~vPv~V 157 (165)
+- +.-.+.-.+.|-.+..+ |---+-+++.-+. ..=+|+|+|+- =-|+++.-..|.+.-..|. +++|+-+
T Consensus 126 Nl-~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~l 204 (472)
T COG5016 126 NL-KTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVEL 204 (472)
T ss_pred HH-HHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEE
Confidence 10 01133334455333221 1222333332211 12257777653 2368888888888877766 8899988
Q ss_pred EeecccC
Q psy2575 158 TFLLNIG 164 (165)
Q Consensus 158 ~~~~~~~ 164 (165)
=|-.+-|
T Consensus 205 HtH~TsG 211 (472)
T COG5016 205 HTHATSG 211 (472)
T ss_pred ecccccc
Confidence 7766655
No 152
>PRK10342 glycerate kinase I; Provisional
Probab=67.74 E-value=8.9 Score=34.29 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=30.3
Q ss_pred hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 115 LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 115 ~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
.++++|.||.|==.+-.. ++..| ....+|..|++|+|||+++|..
T Consensus 281 ~l~~ADLVITGEG~~D~Q-Tl~GK-~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 281 HIHDCTLVITGEGRIDSQ-SIHGK-VPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred HhccCCEEEECCCcCccc-ccCCc-cHHHHHHHHHHhCCCEEEEecc
Confidence 345689888885433221 23333 3556788999999999999864
No 153
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=67.68 E-value=38 Score=29.55 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHh-hcCCceEEEccchHHHhchhCCEEEEcc--c
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLA-KSKIQTVLIPDSAMFGLISRVNKIIIGT--H 127 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~-~~GI~v~~I~dsav~~~m~~v~~VllGA--d 127 (165)
-|..+.+=....+...+..+.+ +.+.-|++.|.-|...+.++.+.+. +.| +.+|-.+..+.+-+.. ..+|. .
T Consensus 89 ~D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g--~rliGPNc~Gii~p~~--~~~gi~p~ 164 (317)
T PTZ00187 89 ADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNK--TRLIGPNCPGIIKPGE--CKIGIMPG 164 (317)
T ss_pred CCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCC--CEEECCCCceEEcchh--hccccCCc
Confidence 4666666666677777776766 7788888999999988877775554 244 4566666666554432 11222 1
Q ss_pred eeecCC--CeeehhcHHHHHHH--HhhCCCcEE
Q psy2575 128 TVMANG--GLRSVCGTHAVALA--AQHYSIPYP 156 (165)
Q Consensus 128 ~V~~nG--~vvnk~GT~~lAl~--Ak~~~vPv~ 156 (165)
.++.-| +++++.||....++ +.+.++.+-
T Consensus 165 ~~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S 197 (317)
T PTZ00187 165 HIHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQS 197 (317)
T ss_pred CCCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEE
Confidence 233445 68999997655544 555555443
No 154
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=67.55 E-value=84 Score=27.36 Aligned_cols=101 Identities=11% Similarity=0.054 Sum_probs=52.3
Q ss_pred CCEEEEecCCHHHHHHHHHH---HhCCceEEEEecCCCCChHH-HHHHH-HhhcCCceEEEccc--------hHHHhc-h
Q psy2575 52 NEIILTLGYSKIVELFLKNA---AQHRKFQCIVMENSPENKGH-ELAVS-LAKSKIQTVLIPDS--------AMFGLI-S 117 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A---~~~~~f~ViV~Es~P~~eG~-~la~~-L~~~GI~v~~I~ds--------av~~~m-~ 117 (165)
.++++|.|.+..+..++... .-++.-+|++.+ |.+.+- ...+. ....|+++..++.. .+...+ +
T Consensus 95 ~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 172 (424)
T PLN02855 95 REIVFTRNATEAINLVAYTWGLANLKPGDEVILSV--AEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE 172 (424)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECC--CccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 46777766655544444421 112334666664 333221 12223 34578888877632 122233 2
Q ss_pred hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 118 RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 118 ~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+...|++. ..-...|.+.. -..|+-+|++++++++|=
T Consensus 173 ~t~lv~i~-~~~n~tG~~~~---~~~I~~l~~~~g~~vivD 209 (424)
T PLN02855 173 KTKLVATH-HVSNVLGSILP---VEDIVHWAHAVGAKVLVD 209 (424)
T ss_pred CceEEEEe-CccccccccCC---HHHHHHHHHHcCCEEEEE
Confidence 34444433 33344555543 246788899999888863
No 155
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=67.36 E-value=34 Score=32.07 Aligned_cols=61 Identities=16% Similarity=0.043 Sum_probs=37.7
Q ss_pred HHHHHhhcCCceEEEccchHHH----hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 93 LAVSLAKSKIQTVLIPDSAMFG----LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 93 la~~L~~~GI~v~~I~dsav~~----~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
+...|...|+++....|..... .+.+=|.+|+ +...|. ..-+..++-.||+.++|++.++.
T Consensus 486 ~~~~l~~lg~~~~~~~d~~~~~~~~~~l~~~DvvI~----iS~sG~---t~e~i~~~~~Ak~~Ga~vIaIT~ 550 (638)
T PRK14101 486 AHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVA----VSKSGR---APELLRVLDVAMQAGAKVIAITS 550 (638)
T ss_pred HHHHHhcCCceEEEcCCHHHHHHHHhcCCCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCeEEEEcC
Confidence 3444555666666666654432 3445566665 222332 11277888999999999999875
No 156
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=67.23 E-value=30 Score=28.09 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=50.4
Q ss_pred EecCCHHHHHHHHHHHhCCceEEEEec--CCCCCh--HHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceee-c
Q psy2575 57 TLGYSKIVELFLKNAAQHRKFQCIVME--NSPENK--GHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVM-A 131 (165)
Q Consensus 57 T~g~S~tV~~~L~~A~~~~~f~ViV~E--s~P~~e--G~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~-~ 131 (165)
--|.|+.=.++|..+ +-+|+|+..+ ..+... -++++.+|+...-. ++....+ .|.+++|||.|. -
T Consensus 7 LAS~SPrR~elL~~~--gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~-------~va~~~~-~~~~VigaDtvv~l 76 (193)
T COG0424 7 LASSSPRRRELLEQL--GIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKAR-------AVAARLP-PDALVIGADTVVVL 76 (193)
T ss_pred EecCCHHHHHHHHHC--CCCeEEecCCCCCCcccCCCHHHHHHHHHHHHHH-------HHHHhCC-CCCEEEecCeEEEE
Confidence 345665555566655 5789999763 333222 46777777765410 1222222 589999999954 5
Q ss_pred CCCeeehhcHHHHH
Q psy2575 132 NGGLRSVCGTHAVA 145 (165)
Q Consensus 132 nG~vvnk~GT~~lA 145 (165)
||.++.|-.+..=|
T Consensus 77 dgrilgKP~~~~eA 90 (193)
T COG0424 77 DGRILGKPKDEEEA 90 (193)
T ss_pred CCEEecCCCCHHHH
Confidence 99999999987655
No 157
>PRK05957 aspartate aminotransferase; Provisional
Probab=67.13 E-value=82 Score=27.11 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhcccC-----CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 35 NPTSDTAPSQACEHIH-----SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~-----~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
...++.+++...++.. ..++++|.|.+..+..++....+ ..-+|++. .|.+.+... .+...|+++.+++.
T Consensus 68 ~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~-~gd~Vlv~--~P~y~~~~~--~~~~~g~~~~~v~~ 142 (389)
T PRK05957 68 PPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITD-PGDEIILN--TPYYFNHEM--AITMAGCQPILVPT 142 (389)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcC-CCCEEEEe--CCCCcCHHH--HHHhcCCEEEEeec
Confidence 4557777776655432 33567777766555444443332 33456664 466654433 34567888877753
Q ss_pred c--------hHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 S--------AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 s--------av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. .+...+. +...+++. ..=.+.|.+..+.=-..++-.|+++++++++
T Consensus 143 ~~~~~~d~~~l~~~i~~~~klv~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 143 DDNYQLQPEAIEQAITPKTRAIVTI-SPNNPTGVVYPEALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred CCCCCcCHHHHHHhcCcCceEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 2 1222222 23333322 2222333333333345578889999988874
No 158
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=67.05 E-value=84 Score=27.67 Aligned_cols=113 Identities=8% Similarity=-0.017 Sum_probs=57.1
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH-HH-HHHHhhcCCceEEEccc---hH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH-EL-AVSLAKSKIQTVLIPDS---AM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~-~l-a~~L~~~GI~v~~I~ds---av 112 (165)
.+...+..+++....+.|++-+.+..+...+....+ ..-+|++.+ |.+.+. .+ ...+...|+++.++... .+
T Consensus 66 ~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~-~GD~Vi~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l 142 (398)
T PRK08249 66 VQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLK-PGDRVVSIK--DTYGGTNKIFTEFLPRMGVDVTLCETGDHEQI 142 (398)
T ss_pred HHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-CCCEEEEcC--CchHHHHHHHHHHHhhCCeEEEEcCCCCHHHH
Confidence 334444444555544455544444343434433322 333566543 555442 23 33467789998876632 23
Q ss_pred HHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+. +...|++-. ---+.|.+.. -..++-+|++++++++|
T Consensus 143 ~~~i~~~tklV~ie~-p~NPtg~v~d---l~~I~~la~~~gi~liv 184 (398)
T PRK08249 143 EAEIAKGCDLLYLET-PTNPTLKIVD---IERLAAAAKKVGALVVV 184 (398)
T ss_pred HHhcCCCCeEEEEEC-CCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 33343 344444421 1123343332 34588889999998876
No 159
>PRK09028 cystathionine beta-lyase; Provisional
Probab=66.98 E-value=79 Score=28.03 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=53.0
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHH-HHHHhhcCCceEEEcc---chHHHhch-hCCEEEEcc
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HEL-AVSLAKSKIQTVLIPD---SAMFGLIS-RVNKIIIGT 126 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~l-a~~L~~~GI~v~~I~d---sav~~~m~-~v~~VllGA 126 (165)
+.++|-|.+..+..++....+ ..-+|++.+ |.+.+ ..+ -..+...|+++.++.. ..+...+. +...|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~-~GD~Vvv~~--~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le- 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLK-AGDHLLMVD--SCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE- 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhC-CCCEEEEEC--CCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE-
Confidence 566665655555555544333 334677764 44433 333 3456778999988752 33554553 34444442
Q ss_pred ceeecCCCeeehhc----HHHHHHHHhhCCCcEEE
Q psy2575 127 HTVMANGGLRSVCG----THAVALAAQHYSIPYPC 157 (165)
Q Consensus 127 d~V~~nG~vvnk~G----T~~lAl~Ak~~~vPv~V 157 (165)
. .-|..| -..++-+|++++++++|
T Consensus 154 -s------psNPtg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 154 -S------PGSITMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred -C------CCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 2 223333 25677888999988876
No 160
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=66.93 E-value=63 Score=28.56 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 34 ANPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
....++.|+++... -+...++++|-|.+..+..++.... ++.-+|++. +|.+.....+..+ .|.++..++.
T Consensus 96 ~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~-~~Gd~Vlv~--~P~y~~y~~~~~~--~g~~~~~~~~ 170 (430)
T PLN00145 96 LLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA-QPGANILLP--RPGYPLYEARAVF--SGLEVRHFDL 170 (430)
T ss_pred CHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc-CCCCEEEEc--CCCCccHHHHHHH--cCCEEEEeeC
Confidence 46778899987644 2566788888888877665555443 344466666 4665544333333 4555555431
Q ss_pred ----------chHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 ----------SAMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 ----------sav~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..+...+. +...+++-. -=-+.|.++.+-=-..++-.|+++++++++
T Consensus 171 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~-P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 171 LPERGWEVDLEGVEALADENTVAMVIIN-PNNPCGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred CcccCCcCCHHHHHHHhCcCceEEEEeC-CCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 12222222 222222221 113344444444445677778999988775
No 161
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=66.87 E-value=64 Score=27.92 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=60.1
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEE-EecCCCCChHHHHHHHHhhcCCceEEEccchHHHh--chhCCEEEEcccee
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCI-VMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGL--ISRVNKIIIGTHTV 129 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~Vi-V~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~--m~~v~~VllGAd~V 129 (165)
-.|..+|.+..-..++....+.+.+++. +++..|...|...+++ .|+++++-.-..+..- ++++|.|++.+..
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~---~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a- 80 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR---LGVATSAEGIDGLLAMPEFDDIDIVFDATSA- 80 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH---cCCCcccCCHHHHHhCcCCCCCCEEEECCCH-
Confidence 4577888665445555555444667755 6677777777777665 5877754221111111 2578888887522
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
.-....+..+...++.|+...|.-
T Consensus 81 ---------~~H~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 81 ---------GAHVRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred ---------HHHHHHHHHHHHcCCeEEECCccc
Confidence 233567788888888888776654
No 162
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=66.85 E-value=57 Score=26.68 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=16.3
Q ss_pred hcHHHHHHHHhhCCCcEEEEe
Q psy2575 139 CGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 139 ~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.=+..++.+|+++++|+.+++
T Consensus 181 ME~aa~~~vA~~~gv~~~~i~ 201 (241)
T TIGR01694 181 MTGVPEAVLARELELCYATLA 201 (241)
T ss_pred ccHHHHHHHHHHCCCCEEEEE
Confidence 346778888888888888764
No 163
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=66.78 E-value=12 Score=27.08 Aligned_cols=16 Identities=6% Similarity=0.237 Sum_probs=10.6
Q ss_pred cccCCCCEEEEecCCH
Q psy2575 47 EHIHSNEIILTLGYSK 62 (165)
Q Consensus 47 ~~I~~~~~ILT~g~S~ 62 (165)
..+.++|.++.+|+|.
T Consensus 43 ~~~~~~dl~I~iS~SG 58 (120)
T cd05710 43 KRLTEKSVVILASHSG 58 (120)
T ss_pred ccCCCCcEEEEEeCCC
Confidence 4567777777776553
No 164
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=66.77 E-value=29 Score=28.78 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=45.9
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEE-EccchHHHhchhCCEEEEccceeecCCCeeeh-hcHHHHHHHHhhCC
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVL-IPDSAMFGLISRVNKIIIGTHTVMANGGLRSV-CGTHAVALAAQHYS 152 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~-I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk-~GT~~lAl~Ak~~~ 152 (165)
...++.|+-..|... ++ ..|++... ..-..+...+.++|.+++|...++.+..-... .--..+...|+..+
T Consensus 27 ~~~~~~v~s~~p~~~----~~---~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~ 99 (298)
T TIGR03609 27 PGVEPTVLSNDPAET----AK---LYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFG 99 (298)
T ss_pred CCCeEEEecCChHHH----Hh---hcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcC
Confidence 445566665555432 22 22554321 12224555678899999999888886432111 11124667889999
Q ss_pred CcEEEEee
Q psy2575 153 IPYPCTFL 160 (165)
Q Consensus 153 vPv~V~~~ 160 (165)
+|+++++.
T Consensus 100 k~~~~~g~ 107 (298)
T TIGR03609 100 KPVILWGQ 107 (298)
T ss_pred CCEEEEec
Confidence 99887753
No 165
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=66.41 E-value=30 Score=24.85 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc---------chHHHhc--hhCCEEEE----ccceeecCCCeeeh
Q psy2575 74 HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD---------SAMFGLI--SRVNKIII----GTHTVMANGGLRSV 138 (165)
Q Consensus 74 ~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d---------sav~~~m--~~v~~Vll----GAd~V~~nG~vvnk 138 (165)
...|+++.++ -.++.|.+.|++|+.+.. ..+..++ .++|.|+- |.+....+|
T Consensus 24 ~~G~~i~aT~--------gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~~~~~~~~~~----- 90 (116)
T cd01423 24 KLGYKLYATE--------GTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRGKRVLDND----- 90 (116)
T ss_pred HCCCEEEEcc--------HHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCCCCCccccCc-----
Confidence 4678888664 368888899998887632 1233333 34888876 332223333
Q ss_pred hcHHHHHHHHhhCCCcEE
Q psy2575 139 CGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 139 ~GT~~lAl~Ak~~~vPv~ 156 (165)
+.+=..|-.+++|++
T Consensus 91 ---~~iRr~Av~~~ip~i 105 (116)
T cd01423 91 ---YVMRRAADDFAVPLI 105 (116)
T ss_pred ---EeeehhhHhhCCccc
Confidence 455577888999986
No 166
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=66.34 E-value=54 Score=26.98 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=69.0
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceE--EEEec--CCCC------ChHHHHHHHHhhcCCceEEEccc------------
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQ--CIVME--NSPE------NKGHELAVSLAKSKIQTVLIPDS------------ 110 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~--ViV~E--s~P~------~eG~~la~~L~~~GI~v~~I~ds------------ 110 (165)
..|++||.++.+...+.+..-..+|. .-+++ +-+. .-..+++..|.+.|++..-++..
T Consensus 30 ~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv~~l~~~g~~a~~l~~~~~~a~~~~~~d~ 109 (248)
T cd04252 30 YPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLKLVEALERNGARARPITSGVFEAEYLDKDKY 109 (248)
T ss_pred cEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCceEEEEECcCccC
Confidence 57999999999888887543222322 11111 1111 11345677888888875554432
Q ss_pred ------------hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCc-EEEEe
Q psy2575 111 ------------AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIP-YPCTF 159 (165)
Q Consensus 111 ------------av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vP-v~V~~ 159 (165)
.+..++..=...++..+++..+|..+|-.|=...+.+|+..+-. ++.++
T Consensus 110 g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~lt 171 (248)
T cd04252 110 GLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLN 171 (248)
T ss_pred CccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEE
Confidence 22223344456888889988999999999999999999998854 44433
No 167
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=66.32 E-value=91 Score=27.31 Aligned_cols=114 Identities=14% Similarity=-0.048 Sum_probs=58.8
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH--HHHHHHHhhcCCceEEEccchHHHh
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG--HELAVSLAKSKIQTVLIPDSAMFGL 115 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG--~~la~~L~~~GI~v~~I~dsav~~~ 115 (165)
.+...+..+++......+++-+.+..+...+.... ++.-+|++.. |.+.+ ..+...+...|+.+.++.......+
T Consensus 61 ~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~-~~Gd~Vi~~~--~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l 137 (391)
T TIGR01328 61 VSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTIL-KAGDHLISDE--CLYGCTFALLEHALTKFGIQVDFINMAIPEEV 137 (391)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEec--CcchHHHHHHHHHHhcCCeEEEEECCCCHHHH
Confidence 44455555555554455555554444444443332 2334566643 44433 2334556778999888875433333
Q ss_pred ---chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 116 ---ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 116 ---m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+..-+++++=..-.-+.|.+.. --.++-+|+++++++++
T Consensus 138 ~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~liv 179 (391)
T TIGR01328 138 KAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIV 179 (391)
T ss_pred HHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 3222233331111223444433 33577888999999887
No 168
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=66.20 E-value=75 Score=26.33 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhcccCC----CCEEEEecCCHHHHHHHHHHHh-------------CCceEEEEecCCCCChHHHHHHHH
Q psy2575 35 NPTSDTAPSQACEHIHS----NEIILTLGYSKIVELFLKNAAQ-------------HRKFQCIVMENSPENKGHELAVSL 97 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~----~~~ILT~g~S~tV~~~L~~A~~-------------~~~f~ViV~Es~P~~eG~~la~~L 97 (165)
....+.+++...+++.- ...+.|.|.+......+..+.. +.+..|++.+ |...... +..
T Consensus 37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~h~~~~--~~~ 112 (345)
T cd06450 37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD--QAHVSVE--KAA 112 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC--cchhHHH--HHH
Confidence 34456666666666542 3688888887766555554432 1123344433 3333322 222
Q ss_pred hhcCCceEEEcc--------chHHHhchh------CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 98 AKSKIQTVLIPD--------SAMFGLISR------VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 98 ~~~GI~v~~I~d--------sav~~~m~~------v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
...|.++..++. ..+...+.+ -.++++....-.+.|.+ .. -..++-+|+++++++++=
T Consensus 113 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~-~~--~~~i~~~~~~~~~~l~vD 184 (345)
T cd06450 113 AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAI-DP--LEEIADLAEKYDLWLHVD 184 (345)
T ss_pred HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCC-CC--HHHHHHHHHHhCCeEEEe
Confidence 233777776652 123334433 33455555445556654 22 366888999999998873
No 169
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=66.00 E-value=1e+02 Score=27.78 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=56.3
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHH-HHHHhhcCCceEEEcc----chHHHhchhCCEEEEcc
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HEL-AVSLAKSKIQTVLIPD----SAMFGLISRVNKIIIGT 126 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~l-a~~L~~~GI~v~~I~d----sav~~~m~~v~~VllGA 126 (165)
..+.|-|....+...|....+ ..-+|++. .|.+.| ..+ ...+...|++++++.. ..+...+..-+++++ .
T Consensus 78 ~av~~~SG~aAi~~al~all~-~GD~VI~~--~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~-~ 153 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICS-SGDHLLCS--STVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY-A 153 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcC-CCCEEEEC--CCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-E
Confidence 455554545454545544333 33467764 344433 233 4457889999998753 345555655456655 3
Q ss_pred ceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 127 HTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 127 d~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+.. .| -...-.---.++-+|+++++|+++
T Consensus 154 e~p-gn-P~~~v~Di~~I~~iA~~~gi~liv 182 (432)
T PRK06702 154 ESL-GN-PAMNVLNFKEFSDAAKELEVPFIV 182 (432)
T ss_pred EcC-CC-ccccccCHHHHHHHHHHcCCEEEE
Confidence 432 21 111111356789999999999887
No 170
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=65.76 E-value=50 Score=26.15 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=30.9
Q ss_pred CCCEEEEecCCHHHHH-HHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEE
Q psy2575 51 SNEIILTLGYSKIVEL-FLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLI 107 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~-~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I 107 (165)
.+.+|++.|.+.-+=. +.....+ +..+|++...++ .+...+...+.+.|.++..+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~-~G~~V~~~~r~~-~~~~~~~~~i~~~~~~~~~~ 64 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQ-AGAEVILNGRDP-AKLAAAAESLKGQGLSAHAL 64 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHHHHHHHhcCceEEEE
Confidence 4668888887765533 3333332 456787775443 33445566676666555443
No 171
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=65.73 E-value=84 Score=27.59 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=52.8
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH-HHHHHH-hhcCCceEEEccch-------HHHhc-hhCCEE
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH-ELAVSL-AKSKIQTVLIPDSA-------MFGLI-SRVNKI 122 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~-~la~~L-~~~GI~v~~I~dsa-------v~~~m-~~v~~V 122 (165)
.+++|-|.+..+...+....-.+.-+|++.+ |.+... ..++.+ ...|+++..++... +...+ ++...|
T Consensus 131 ~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~v 208 (447)
T PRK00451 131 NASMYDGATALAEAALMAVRITKRKKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAAV 208 (447)
T ss_pred eEEecCcHHHHHHHHHHHHHhcCCCEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEEE
Confidence 4556666555545544432213445788865 333322 223333 34688888886431 22233 234344
Q ss_pred EEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 123 IIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 123 llGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
++.. . ...| .+.. -..|+-+|++++++++|
T Consensus 209 ~l~~-p-n~tG-~v~~--l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 209 VVQY-P-NFFG-VIED--LEEIAEIAHAGGALFIV 238 (447)
T ss_pred EEEC-C-CCCC-eeCC--HHHHHHHHHHCCCEEEE
Confidence 4443 3 3444 3344 45588999999999887
No 172
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=65.73 E-value=1e+02 Score=27.66 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=73.1
Q ss_pred HHHHHHHHhccc--CCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhh---cCCceEEEccc-
Q psy2575 38 SDTAPSQACEHI--HSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAK---SKIQTVLIPDS- 110 (165)
Q Consensus 38 ~~~Ia~~a~~~I--~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~---~GI~v~~I~ds- 110 (165)
-+.+.++.+.+| +.++++.+-+-|.++.+.|..+.+ ..+-+|||.|..-.-.+..++.-+.+ .|.++.....-
T Consensus 78 p~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~ 157 (407)
T COG3844 78 PERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPR 157 (407)
T ss_pred hhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChH
Confidence 577888888888 678999999999999999998887 44678999998777666666555544 33455544332
Q ss_pred hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 111 AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 111 av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
++...+.+=..|++=.+.=+..|.+.. +-|+.+..|..|-+|.
T Consensus 158 ~~~~~~~dd~AvV~L~~V~y~TGql~d-----m~aiT~~AH~~galv~ 200 (407)
T COG3844 158 ALEEAITDDVAVVLLSHVNYKTGQLLD-----MRAITALAHQHGALVG 200 (407)
T ss_pred HHHHhhccceEEEEeccccccccceee-----HHHHHHHHHhcCceEE
Confidence 444444443344444444444443322 2344455555555543
No 173
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=65.71 E-value=49 Score=25.89 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=27.5
Q ss_pred HHHHHHHhccc--CCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCC
Q psy2575 39 DTAPSQACEHI--HSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENS 85 (165)
Q Consensus 39 ~~Ia~~a~~~I--~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~ 85 (165)
..+++.+.++. -.|..|++.|++.++-..+.....++..+|+++...
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 34444444443 357889999998876654443333344467776644
No 174
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=65.45 E-value=45 Score=23.49 Aligned_cols=86 Identities=15% Similarity=0.056 Sum_probs=48.9
Q ss_pred CCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcccee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTV 129 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V 129 (165)
.|..|+++|.+....+-+....+ +.+.+|+-.+. ...+ ..+ ++.... ....+..+++|+...+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~~~----~~i--~~~~~~-~~~~l~~~~lV~~at~d- 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EFSE----GLI--QLIRRE-FEEDLDGADLVFAATDD- 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HHHH----TSC--EEEESS--GGGCTTESEEEE-SS--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hhhh----hHH--HHHhhh-HHHHHhhheEEEecCCC-
Confidence 46788889988877665555554 44444443332 1111 112 233222 23456777777766532
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
..-...++..|++.++||.++-
T Consensus 71 --------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 71 --------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp --------HHHHHHHHHHHHHTTSEEEETT
T ss_pred --------HHHHHHHHHHHhhCCEEEEECC
Confidence 3334678899999999999863
No 175
>PRK07503 methionine gamma-lyase; Provisional
Probab=65.45 E-value=96 Score=27.27 Aligned_cols=112 Identities=13% Similarity=-0.020 Sum_probs=58.3
Q ss_pred HHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HH-HHHHHhhcCCceEEEccc---hHHH
Q psy2575 40 TAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HE-LAVSLAKSKIQTVLIPDS---AMFG 114 (165)
Q Consensus 40 ~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~-la~~L~~~GI~v~~I~ds---av~~ 114 (165)
...+.-+++..-...|++-+.+..+...+.... +..-+|++.. |.+.+ .. +...+...|+++..+... .+..
T Consensus 69 ~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll-~~Gd~Viv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ 145 (403)
T PRK07503 69 LLEQRMASLEGGEAAVALASGMGAITATLWTLL-RPGDEVIVDQ--TLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKA 145 (403)
T ss_pred HHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEcc--CccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHH
Confidence 333333344443345555554444444443332 3344666643 44422 22 234567789999887643 3333
Q ss_pred hch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 115 LIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 115 ~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+. +...|++ ....-+.|.+.. --.|+-+|+++++++++=
T Consensus 146 ~i~~~tklV~l-e~p~NPtG~~~d---i~~I~~la~~~gi~lIvD 186 (403)
T PRK07503 146 AISDKTRMVYF-ETPANPNMRLVD---IAAVAEIAHGAGAKVVVD 186 (403)
T ss_pred hcCccCcEEEE-eCCCCCCCeeeC---HHHHHHHHHHcCCEEEEE
Confidence 343 3444444 223334454443 356788899999998873
No 176
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=65.39 E-value=36 Score=27.58 Aligned_cols=101 Identities=16% Similarity=0.033 Sum_probs=56.3
Q ss_pred EEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceE--EEcc-chHHHhchhC-CEEEEccceee
Q psy2575 55 ILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTV--LIPD-SAMFGLISRV-NKIIIGTHTVM 130 (165)
Q Consensus 55 ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~--~I~d-sav~~~m~~v-~~VllGAd~V~ 130 (165)
||+.|.+.-+=..|......+..+|+..+..+....... .++... -+.| ..+...+..+ |.|+--|-...
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~ 76 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSS 76 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccccCc
Confidence 666666555544444343334567776665443221111 111111 1122 3445556666 77775554443
Q ss_pred cCC---------CeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 131 ANG---------GLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 131 ~nG---------~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
..+ .-.|-.||..+.-+|+..+++-+|. .++
T Consensus 77 ~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~-~ss 116 (314)
T COG0451 77 VPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVF-ASS 116 (314)
T ss_pred hhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE-eCC
Confidence 332 2588999999999999988877777 444
No 177
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=65.13 E-value=1e+02 Score=27.57 Aligned_cols=120 Identities=12% Similarity=0.149 Sum_probs=78.8
Q ss_pred HHHHHHHHhcccC--CCCEEEEecCCHH-HHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc----
Q psy2575 38 SDTAPSQACEHIH--SNEIILTLGYSKI-VELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS---- 110 (165)
Q Consensus 38 ~~~Ia~~a~~~I~--~~~~ILT~g~S~t-V~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds---- 110 (165)
...+.+.....++ ++++++..|.++. ++..+.+..+ +.-+|+|+....+ |.+++.-+..+|.++..+.-.
T Consensus 40 ~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~-pgdkVLv~~nG~F--G~R~~~ia~~~g~~v~~~~~~wg~~ 116 (383)
T COG0075 40 MKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE-PGDKVLVVVNGKF--GERFAEIAERYGAEVVVLEVEWGEA 116 (383)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC-CCCeEEEEeCChH--HHHHHHHHHHhCCceEEEeCCCCCC
Confidence 3344444455554 3467777666654 4556666654 5667888865544 788999999999988877543
Q ss_pred ----hHHHhchh---CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecccC
Q psy2575 111 ----AMFGLISR---VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLNIG 164 (165)
Q Consensus 111 ----av~~~m~~---v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~~~ 164 (165)
.+...+.+ ++.|. =.++=.+- |++|.+.. ||-+||.|+.=++|=|-+++|
T Consensus 117 v~p~~v~~~L~~~~~~~~V~-~vH~ETST-Gvlnpl~~--I~~~~k~~g~l~iVDaVsS~G 173 (383)
T COG0075 117 VDPEEVEEALDKDPDIKAVA-VVHNETST-GVLNPLKE--IAKAAKEHGALLIVDAVSSLG 173 (383)
T ss_pred CCHHHHHHHHhcCCCccEEE-EEeccCcc-cccCcHHH--HHHHHHHcCCEEEEEecccCC
Confidence 45555552 43333 23343444 68887765 889999999999988888877
No 178
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=65.08 E-value=44 Score=23.28 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHHhhcCCceEEEc--cc----hHHHhch--hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 95 VSLAKSKIQTVLIP--DS----AMFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 95 ~~L~~~GI~v~~I~--ds----av~~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
..+.+.|+++..+. .. ++..+.. ++|.+++|...=...+ -.-.|+. ...+.++.+.||+++
T Consensus 63 ~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~--~~~lGs~-~~~v~~~~~~pvlvv 131 (132)
T cd01988 63 RIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLR--DRLFGGV-IDQVLESAPCDVAVV 131 (132)
T ss_pred HHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCcc--ceecCch-HHHHHhcCCCCEEEe
Confidence 33446788877554 21 2333333 4999999987532221 1224653 334468888999875
No 179
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=65.04 E-value=57 Score=29.32 Aligned_cols=115 Identities=13% Similarity=0.121 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHH---HHh--CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKN---AAQ--HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~---A~~--~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
++++++|++. --..+.++|.|-|.+......|+. +.+ ++.-++|+....-- -=.+.++.|...|++|||++-
T Consensus 47 e~AR~~iA~l--lga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~-aVl~~~~~Le~~g~~Vtyl~V 123 (386)
T COG1104 47 EEAREQIAKL--LGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHP-AVLNTCRYLERQGFEVTYLPV 123 (386)
T ss_pred HHHHHHHHHH--hCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccH-HHHHHHHHHHhcCCeEEEeCC
Confidence 4445555541 122557899999988876666654 222 24557776532211 112458888778999999986
Q ss_pred chHHH--------hchhCCEEEEccceeecCCCeeehhcHH----HHHHHHhhCCCcEEEEe
Q psy2575 110 SAMFG--------LISRVNKIIIGTHTVMANGGLRSVCGTH----AVALAAQHYSIPYPCTF 159 (165)
Q Consensus 110 sav~~--------~m~~v~~VllGAd~V~~nG~vvnk~GT~----~lAl~Ak~~~vPv~V~~ 159 (165)
..-+. .++ =|-+++.. . .+-|-+||. .|+-+||.++++|.|=+
T Consensus 124 ~~~G~v~~e~L~~al~-~~T~LVSi--m----~aNnE~G~IQpI~ei~~i~k~~~i~fHvDA 178 (386)
T COG1104 124 DSNGLVDLEQLEEALR-PDTILVSI--M----HANNETGTIQPIAEIGEICKERGILFHVDA 178 (386)
T ss_pred CCCCeEcHHHHHHhcC-CCceEEEE--E----ecccCeeecccHHHHHHHHHHcCCeEEEeh
Confidence 54222 222 23333332 1 233566765 47899999999998744
No 180
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=64.92 E-value=44 Score=28.80 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHHHHh----cccCCCCEEEEecCCHHHHHHHHHHHh---CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc-
Q psy2575 37 TSDTAPSQAC----EHIHSNEIILTLGYSKIVELFLKNAAQ---HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP- 108 (165)
Q Consensus 37 ~~~~Ia~~a~----~~I~~~~~ILT~g~S~tV~~~L~~A~~---~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~- 108 (165)
..+.++..|+ +.++++++ +.+||++|+.++...... .++.+|+=+=..+...... ...+.. +.+..+++
T Consensus 97 ~~~~vg~~aA~~L~~~l~~~~~-IGvswG~Tl~~~~~~l~~~~~~~~~~vV~l~Gg~~~~~~~-~~~~~~-~~~~~~l~a 173 (318)
T PRK15418 97 IGGRLGIGAAHMLMSLLQPQQL-LAVGFGEATMNTLQHLSGFISSQQIRLVTLSGGVGPYMTG-IGQLDA-ACSVSIIPA 173 (318)
T ss_pred HHHHHHHHHHHHHHHhcCCCCE-EEEcchHHHHHHHHhccccCCCCCCEEEEcCCCCCcchhh-HHHHhc-cCCeEEecc
Confidence 3455665554 45577774 567999999998866542 3456666443333211112 223422 33333433
Q ss_pred ----cch--------------HHHhchhCCEEEEccceeec
Q psy2575 109 ----DSA--------------MFGLISRVNKIIIGTHTVMA 131 (165)
Q Consensus 109 ----dsa--------------v~~~m~~v~~VllGAd~V~~ 131 (165)
++. +...++++|.+++|.=.+.+
T Consensus 174 P~~v~s~e~~~~l~~e~~i~~vl~~~~~~Dial~GIG~~~~ 214 (318)
T PRK15418 174 PLRASSAEIARTLRNENSVRDVMLAAQAADVAIVGIGAVNQ 214 (318)
T ss_pred CeecCCHHHHHHHHhChHHHHHHHHHHhCCEEEEEecCCCC
Confidence 322 22345679999999877664
No 181
>CHL00194 ycf39 Ycf39; Provisional
Probab=64.83 E-value=82 Score=26.25 Aligned_cols=100 Identities=15% Similarity=0.016 Sum_probs=56.2
Q ss_pred EEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc---cchHHHhchhCCEEEEccceee
Q psy2575 54 IILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP---DSAMFGLISRVNKIIIGTHTVM 130 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~---dsav~~~m~~v~~VllGAd~V~ 130 (165)
+|++.|.+..+=..|.+....+.++|.++.-.|. -+..+...|+++.... ...+...++.+|.|+--+....
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~-----~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~ 76 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLR-----KASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRP 76 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChH-----HhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC
Confidence 5777777666544333332224467776643321 1233444566554322 2345667788888876433221
Q ss_pred cCC---CeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 131 ANG---GLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 131 ~nG---~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+. .-+|..|+..+.-+|++.+++-+|.
T Consensus 77 ~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 77 SDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 111 1235678899999999999876554
No 182
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=64.56 E-value=81 Score=26.08 Aligned_cols=115 Identities=11% Similarity=0.016 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc---chH
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD---SAM 112 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d---sav 112 (165)
...+.+.+...+++...+.|++.+.+......+. +.-++.-+|++. +|.+... ...+...|.++..++. ..+
T Consensus 46 ~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~-~~~~~gd~Vl~~--~~~~~~~--~~~~~~~g~~~~~~~~~~~~~l 120 (349)
T cd06454 46 DLHEELEEELAEFHGKEAALVFSSGYAANDGVLS-TLAGKGDLIISD--SLNHASI--IDGIRLSGAKKRIFKHNDMEDL 120 (349)
T ss_pred hHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHH-HhcCCCCEEEEe--hhhhHHH--HHHHHHcCCceEEecCCCHHHH
Confidence 3345555555556665555555444433333333 322344456553 3444332 2334557888776643 233
Q ss_pred HHhchh-----CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 113 FGLISR-----VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 113 ~~~m~~-----v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
-..+++ -.++++ ...+....|..... ..|+-+|+++++++++=
T Consensus 121 e~~i~~~~~~~~~~~v~-~~~~~~~tG~~~~~--~~i~~~~~~~~~~livD 168 (349)
T cd06454 121 EKLLREARRPYGKKLIV-TEGVYSMDGDIAPL--PELVDLAKKYGAILFVD 168 (349)
T ss_pred HHHHHHhhccCCCeEEE-EeccccCCCCccCH--HHHHHHHHHcCCEEEEE
Confidence 444443 123333 23333223344443 56788899999999873
No 183
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=64.40 E-value=36 Score=26.33 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCCceEEEccchHHHh---chhCCEEEE-ccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMFGL---ISRVNKIII-GTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~~~---m~~v~~Vll-GAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
..+++.|++.|+++.+++...-... ..++|.+++ |... +. .+.+.....+-+-..++|++-+|
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~-----~~-~~~~~~~~i~~~~~~~~PvlGIC 78 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPG-----HP-EDAGISLEIIRALAGKVPILGVC 78 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCC-----Cc-ccchhHHHHHHHHhcCCCEEEEC
Confidence 4578889999999999887655332 356888776 3221 11 11112222222223479999877
No 184
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=64.30 E-value=65 Score=24.89 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=31.5
Q ss_pred CCCEEEEecCCHHHHH-HHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEE
Q psy2575 51 SNEIILTLGYSKIVEL-FLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLI 107 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~-~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I 107 (165)
.+.+|++.|.|.-+=. +.....+ +..+|++.-.++...-..+...+...+-++.++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAA-QGANVVINYASSEAGAEALVAEIGALGGKALAV 60 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCchhHHHHHHHHHHhcCCceEEE
Confidence 3457777777665533 4443333 456777665555544445566666555555444
No 185
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=63.95 E-value=84 Score=26.65 Aligned_cols=122 Identities=12% Similarity=0.137 Sum_probs=65.8
Q ss_pred HHHHHHHHhcccC--C-CCEEEEecCCHHHHHHHHHHH--hCCceEEEEecCCCCChHHHHHHHHh-hcCCceEEEccc-
Q psy2575 38 SDTAPSQACEHIH--S-NEIILTLGYSKIVELFLKNAA--QHRKFQCIVMENSPENKGHELAVSLA-KSKIQTVLIPDS- 110 (165)
Q Consensus 38 ~~~Ia~~a~~~I~--~-~~~ILT~g~S~tV~~~L~~A~--~~~~f~ViV~Es~P~~eG~~la~~L~-~~GI~v~~I~ds- 110 (165)
.+++-+..++++. + .++++|.+.+..+..++.... -++.-+|+++......... ....+. ..|+++++|+..
T Consensus 45 ~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~-~~~~~~~~~g~~v~~i~~~~ 123 (371)
T PF00266_consen 45 LEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRY-PWEEIAKRKGAEVRVIPADP 123 (371)
T ss_dssp HHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHH-HHHHHHHHTTEEEEEEEEGT
T ss_pred HHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccccccccccccccccccccc-ccccccccchhhhccccccc
Confidence 3344444445553 3 456666555544455555552 1344577766544322221 244444 789999988742
Q ss_pred -------hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecccC
Q psy2575 111 -------AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLNIG 164 (165)
Q Consensus 111 -------av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~~~ 164 (165)
.+...+ ++.+.|.+-. .=..+| +.+. --.|+-+||+++++++|=+-..+|
T Consensus 124 ~~~~~~~~~~~~l~~~~~lv~~~~-~~~~tG-~~~p--i~~I~~~~~~~~~~~~vD~~~~~g 181 (371)
T PF00266_consen 124 GGSLDLEDLEEALNPDTRLVSISH-VENSTG-VRNP--IEEIAKLAHEYGALLVVDAAQSAG 181 (371)
T ss_dssp TSSCSHHHHHHHHHTTESEEEEES-BETTTT-BBSS--HHHHHHHHHHTTSEEEEE-TTTTT
T ss_pred cchhhhhhhhhhhccccceEEeec-cccccc-EEee--eceehhhhhccCCceeEechhccc
Confidence 233333 4455555543 324455 4444 346788899999999885554444
No 186
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=63.83 E-value=85 Score=27.98 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=57.9
Q ss_pred HHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHH-HHHHhhcCCceEEEcc---chHH
Q psy2575 39 DTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HEL-AVSLAKSKIQTVLIPD---SAMF 113 (165)
Q Consensus 39 ~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~l-a~~L~~~GI~v~~I~d---sav~ 113 (165)
+...+.-+++......+++-+.+..+...+....+ +.-+|++.+ |.+.| ..+ ...+...|+++.+..- ..+.
T Consensus 61 ~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~-~Gd~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le 137 (425)
T PRK06084 61 DVLEQRVAALEGGVGALAVASGMAAITYAIQTIAE-AGDNIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALE 137 (425)
T ss_pred HHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhC-CCCEEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHH
Confidence 33444444444433455554444444444443333 333566654 33333 223 3445557888887752 3344
Q ss_pred Hhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 114 GLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 114 ~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..+. +...|++ ..---+.|.+.. -..++-+|++++++++|
T Consensus 138 ~ai~~~tklV~l-esp~NPtG~v~d---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 138 ALIDERTKAVFC-ESIGNPAGNIID---IQALADAAHRHGVPLIV 178 (425)
T ss_pred HHhccCCcEEEE-eCCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 4443 3445555 222234444443 36788889999998876
No 187
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=63.80 E-value=40 Score=27.08 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHHHHHHHhcc-cCCCCEEEEe---cCCHHHHHHHHHHHhCCceEEEEecCCCCC
Q psy2575 38 SDTAPSQACEH-IHSNEIILTL---GYSKIVELFLKNAAQHRKFQCIVMENSPEN 88 (165)
Q Consensus 38 ~~~Ia~~a~~~-I~~~~~ILT~---g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~ 88 (165)
.|.+-.+-.+- =+.||+.+-+ |.|..|.+.+..|++ +..+|+.+-++-+.
T Consensus 95 yd~vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~-~gm~vI~ltG~~GG 148 (176)
T COG0279 95 YDEVFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKE-KGMTVIALTGKDGG 148 (176)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHH-cCCEEEEEecCCCc
Confidence 45555544443 3789998876 678889999998876 77888988666554
No 188
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=63.77 E-value=1e+02 Score=27.01 Aligned_cols=113 Identities=11% Similarity=0.008 Sum_probs=58.1
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHHHHHHh-hcCCceEEEcc---chH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HELAVSLA-KSKIQTVLIPD---SAM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~la~~L~-~~GI~v~~I~d---sav 112 (165)
.+.+.+.-+++....+.++|-|.+..+...+.... ++.-+|++.+ |.+.| ..+...+. ..|+++.++.. ..+
T Consensus 54 ~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~-~~GD~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l 130 (386)
T PRK08045 54 RDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQAL 130 (386)
T ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHH
Confidence 44444444444443455655555544444444332 3444666654 65654 44545444 45678887642 223
Q ss_pred HHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+ ++...|++. .---+.|.+.. -..++-+|++++++++|
T Consensus 131 ~~~l~~~tklV~l~-sP~NPtG~v~d---i~~I~~ia~~~g~~viv 172 (386)
T PRK08045 131 RAALAEKPKLVLVE-SPSNPLLRVVD---IAKICHLAREAGAVSVV 172 (386)
T ss_pred HHhcccCCeEEEEE-CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 3333 234445442 22223344443 24688888999988875
No 189
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.74 E-value=49 Score=25.95 Aligned_cols=98 Identities=9% Similarity=0.058 Sum_probs=50.7
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEE-cc----chHHHhch-------hC
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLI-PD----SAMFGLIS-------RV 119 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I-~d----sav~~~m~-------~v 119 (165)
+.++++.|.+.-+=.-+.+....+..+|++.-.|.......++..+.+.|-++.++ .| ..+..++. ++
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGRL 83 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45777777776553323222222445676655555555566777777666544443 23 22333333 35
Q ss_pred CEEEEccceeecCCCe-------------eehhcHHHHHHHHhh
Q psy2575 120 NKIIIGTHTVMANGGL-------------RSVCGTHAVALAAQH 150 (165)
Q Consensus 120 ~~VllGAd~V~~nG~v-------------vnk~GT~~lAl~Ak~ 150 (165)
|.++-.+-. ...+.. +|..|+..++.++..
T Consensus 84 d~vi~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 126 (250)
T PRK08063 84 DVFVNNAAS-GVLRPAMELEESHWDWTMNINAKALLFCAQEAAK 126 (250)
T ss_pred CEEEECCCC-CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555554311 111111 566778887766654
No 190
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=63.63 E-value=57 Score=24.82 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhcCCceEEEccc--hHHHhchhCCEEEEccc-------eeecCCCeeehhcHHH
Q psy2575 89 KGHELAVSLAKSKIQTVLIPDS--AMFGLISRVNKIIIGTH-------TVMANGGLRSVCGTHA 143 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~ds--av~~~m~~v~~VllGAd-------~V~~nG~vvnk~GT~~ 143 (165)
-|+.++..|.+.|..++..... .+...++++|.|+...= ..+..|.++-.+|...
T Consensus 40 vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 40 VGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCccCHHHcCCCCEEEEcCCCc
Confidence 3445555555555555444310 24445666776664321 1233456665555443
No 191
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=63.52 E-value=66 Score=27.24 Aligned_cols=109 Identities=11% Similarity=0.029 Sum_probs=57.0
Q ss_pred cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh---cCC-ceEEEc----c-chHHHhchhC
Q psy2575 49 IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK---SKI-QTVLIP----D-SAMFGLISRV 119 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~---~GI-~v~~I~----d-sav~~~m~~v 119 (165)
.-.+.+|++.|.+--+=.-|......+..+|++++..+......+...... ... .+.++. | ..+..+++++
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 334567888876654433333222224568888876554322222211111 100 122222 2 3456667788
Q ss_pred CEEEEccceeec---CC-----CeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 120 NKIIIGTHTVMA---NG-----GLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 120 ~~VllGAd~V~~---nG-----~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
|.|+--|-.... .. .-.|-.||..+.-+|++++++=+|
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v 137 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFT 137 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 888765532111 11 125678999999999999875333
No 192
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.38 E-value=1e+02 Score=27.05 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=51.9
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchh-CCEEEEcccee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISR-VNKIIIGTHTV 129 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~-v~~VllGAd~V 129 (165)
.|.+|+..|.+..=...-... .....+|++.|..+... ...+..|.+.|+++..-.+.. ....+ .|.|+.++ +|
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~-~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~-gi 78 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSE-NPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNP-GI 78 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccc-hhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECC-CC
Confidence 366788888776323332222 23557899988665422 234567888898775433221 22333 67766665 22
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
-.+ .++...|++.++|++
T Consensus 79 ~~~---------~~~~~~a~~~~i~v~ 96 (447)
T PRK02472 79 PYT---------NPMVEKALEKGIPII 96 (447)
T ss_pred CCC---------CHHHHHHHHCCCcEE
Confidence 222 355666677777765
No 193
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=63.37 E-value=21 Score=27.11 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=33.0
Q ss_pred hcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhc
Q psy2575 46 CEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKS 100 (165)
Q Consensus 46 ~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~ 100 (165)
.+.+.+.++|.|.|....-..++...++ .+.-.||++ +.|.+.|.++.+.|.++
T Consensus 24 l~~~~~~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIIL-TD~D~~Ge~Irk~l~~~ 78 (127)
T COG1658 24 LKRLGDAGVIITNGSAINSLETIELIKKAQKYKGVIIL-TDPDRKGERIRKKLKEY 78 (127)
T ss_pred HHHhcCCceEEEcCCccchHHHHHHHHHhhccCCEEEE-eCCCcchHHHHHHHHHH
Confidence 4455667788888875332333333332 133346655 67889999998887763
No 194
>PRK07050 cystathionine beta-lyase; Provisional
Probab=63.33 E-value=1e+02 Score=26.98 Aligned_cols=115 Identities=11% Similarity=0.009 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHHH-HHHhhcCCceEEEcc---ch
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HELA-VSLAKSKIQTVLIPD---SA 111 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~la-~~L~~~GI~v~~I~d---sa 111 (165)
..+.+.+..+++.....+++|-|.+..+...+.... ++.-+|++.+ |.+.+ ..+. ..+...|+++..+.. ..
T Consensus 66 t~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~-~~GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~ 142 (394)
T PRK07050 66 TSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLV-KAGDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPLIGAG 142 (394)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHh-CCCCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCCCHHH
Confidence 345555555666554455555555545444444333 3556777764 44433 2333 345668999988853 33
Q ss_pred HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 112 MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 112 v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+...+..-+++++-. .++.-.....=-..++-+|+++++++++
T Consensus 143 l~~~i~~~tklV~le---~p~Np~~~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 143 IADLIQPNTRLIWLE---APGSVTMEVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred HHHhcCCCCeEEEEE---CCCCCCccHhhHHHHHHHHHHcCCEEEE
Confidence 555554333443311 1221222333345677889999998886
No 195
>PRK13937 phosphoheptose isomerase; Provisional
Probab=63.30 E-value=23 Score=27.81 Aligned_cols=49 Identities=4% Similarity=-0.082 Sum_probs=30.2
Q ss_pred eEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEc
Q psy2575 77 FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIG 125 (165)
Q Consensus 77 f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllG 125 (165)
.-+.+.-|....+=.+.++.+++.|+++..|+...-..+-+.+|.++.-
T Consensus 109 l~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~ 157 (188)
T PRK13937 109 VLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV 157 (188)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 3333444444444455677777778888777776666666667777653
No 196
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=63.26 E-value=30 Score=25.86 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=42.3
Q ss_pred EEecCCCC-----ChHHHHHHHHhhcCCce--EEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCC
Q psy2575 80 IVMENSPE-----NKGHELAVSLAKSKIQT--VLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYS 152 (165)
Q Consensus 80 iV~Es~P~-----~eG~~la~~L~~~GI~v--~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~ 152 (165)
++.-+.|+ .++.++|+.+.+.|.++ ...-+.+|....+.. .+.+. .+-=+.+...++..|+
T Consensus 5 iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q----------~p~~~--~~n~~~~~~~L~~~~~ 72 (128)
T PRK00207 5 IAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANALT----------VPASD--EFDLVRAWQQLAAEHG 72 (128)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCC----------CCchh--hhhHHHHHHHHHHhcC
Confidence 45566776 46788899999988663 233344455544421 12211 2222355667888899
Q ss_pred CcEEEEeec
Q psy2575 153 IPYPCTFLL 161 (165)
Q Consensus 153 vPv~V~~~~ 161 (165)
+|+|||..+
T Consensus 73 v~l~vC~~~ 81 (128)
T PRK00207 73 VALNVCVAA 81 (128)
T ss_pred CEEEEeHHH
Confidence 999998654
No 197
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=63.23 E-value=63 Score=27.88 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=38.3
Q ss_pred HHHHHHHhhcCCceEEEccch--------HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhC----CCcEEEE
Q psy2575 91 HELAVSLAKSKIQTVLIPDSA--------MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHY----SIPYPCT 158 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsa--------v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~----~vPv~V~ 158 (165)
.+.++.|.+.||++++|.... +...+++..+|+ +.+++....-.|+.....++... ..|+.-+
T Consensus 217 ~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv-----~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~ 291 (327)
T PRK09212 217 LEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLV-----VVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERV 291 (327)
T ss_pred HHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEE-----EEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEE
Confidence 344566666777766654332 334556666665 34555666667777777777762 4566655
Q ss_pred ee
Q psy2575 159 FL 160 (165)
Q Consensus 159 ~~ 160 (165)
+-
T Consensus 292 ~~ 293 (327)
T PRK09212 292 TG 293 (327)
T ss_pred cC
Confidence 43
No 198
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=63.06 E-value=60 Score=26.90 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCcEEEEee
Q psy2575 141 THAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 141 T~~lAl~Ak~~~vPv~V~~~ 160 (165)
+.+++.+|+++++|+.+++-
T Consensus 191 ~aaea~~A~~~gv~~~~i~~ 210 (249)
T TIGR01700 191 TVPEVIVARHCGLRVFGFSL 210 (249)
T ss_pred hHHHHHHHHHcCCcEEEEEE
Confidence 57889999999999997753
No 199
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.94 E-value=54 Score=31.65 Aligned_cols=85 Identities=11% Similarity=0.039 Sum_probs=50.1
Q ss_pred EEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCC
Q psy2575 55 ILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGG 134 (165)
Q Consensus 55 ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~ 134 (165)
|+.+|-..+=...|.+....+..+|++.|.++... ...|.+.|+++..-.+. ..+..+|.|++++ +|-.+
T Consensus 7 i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~----~~~L~~~gi~~~~g~~~---~~~~~~d~vV~Sp-gI~~~-- 76 (809)
T PRK14573 7 YHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKT----VEKLKAKGARFFLGHQE---EHVPEDAVVVYSS-SISKD-- 76 (809)
T ss_pred EEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChH----HHHHHHCCCEEeCCCCH---HHcCCCCEEEECC-CcCCC--
Confidence 55555443333333333334678999999876442 34588889887644322 3456788888775 33322
Q ss_pred eeehhcHHHHHHHHhhCCCcEE
Q psy2575 135 LRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 135 vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
.+.-..|++.++|++
T Consensus 77 -------~p~~~~a~~~gi~v~ 91 (809)
T PRK14573 77 -------NVEYLSAKSRGNRLV 91 (809)
T ss_pred -------CHHHHHHHHCCCcEE
Confidence 244556677777765
No 200
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=62.77 E-value=56 Score=23.62 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=27.7
Q ss_pred hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 118 RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 118 ~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
++|.+++|++. +...+.| ....-+.++.++||+|+=
T Consensus 103 ~~DLIV~Gs~~-----~~~~~lg-Sva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 103 DMDLVVCGHHQ-----DFWSKLM-SSARQLINTVHVDMLIVP 138 (144)
T ss_pred CCCEEEEeCcc-----cHHHHHH-HHHHHHHhhCCCCEEEec
Confidence 49999999984 2344577 455678899999999973
No 201
>PRK08960 hypothetical protein; Provisional
Probab=62.55 E-value=1e+02 Score=26.47 Aligned_cols=118 Identities=12% Similarity=0.018 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 34 ANPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
....++.|+++-.. .+...++++|.|.+..+..++... -++.-+|++. .|.+.+... .+...|..+..++.
T Consensus 71 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~-~~~gd~vlv~--~p~y~~~~~--~~~~~g~~~~~v~~ 145 (387)
T PRK08960 71 LPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLL-VDPGKHWLLA--DPGYPCNRH--FLRLVEGAAQLVPV 145 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHh-cCCCCEEEEc--CCCCcchHH--HHHhcCCeEEEEec
Confidence 35778888887543 267778888888877665544433 2344566664 466554333 22334655555542
Q ss_pred c-h------HHHh---ch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 S-A------MFGL---IS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 s-a------v~~~---m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. . +..+ +. +...+++. .-=-+.|.++...=-..++-+|+++++.+++
T Consensus 146 ~~~~~~~~d~~~l~~~~~~~~~~i~i~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 146 GPDSRYQLTPALVERHWNADTVGALVA-SPANPTGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred CcccCCCCCHHHHHHHhCccceEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 1 1 1122 22 23233321 1123444444444344677788999887664
No 202
>PRK13938 phosphoheptose isomerase; Provisional
Probab=62.47 E-value=29 Score=27.90 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=20.2
Q ss_pred HHHhcccCCCCEEEEecCC---HHHHHHHHHHHhCCceEEEE
Q psy2575 43 SQACEHIHSNEIILTLGYS---KIVELFLKNAAQHRKFQCIV 81 (165)
Q Consensus 43 ~~a~~~I~~~~~ILT~g~S---~tV~~~L~~A~~~~~f~ViV 81 (165)
.+....+.++|.++.+|+| +.+...+..|++ +..+++.
T Consensus 105 ~~~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~-~G~~vI~ 145 (196)
T PRK13938 105 RALEGSARPGDTLFAISTSGNSMSVLRAAKTARE-LGVTVVA 145 (196)
T ss_pred HHHHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHH-CCCEEEE
Confidence 3334567778887777655 334444444443 3334443
No 203
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=62.16 E-value=1.3e+02 Score=27.71 Aligned_cols=116 Identities=11% Similarity=0.074 Sum_probs=65.1
Q ss_pred HHHHhcccCCCCEEEEecC--CH---HHHHHHH-HHHh----C--CceEEEEecC-CC------CChH----------HH
Q psy2575 42 PSQACEHIHSNEIILTLGY--SK---IVELFLK-NAAQ----H--RKFQCIVMEN-SP------ENKG----------HE 92 (165)
Q Consensus 42 a~~a~~~I~~~~~ILT~g~--S~---tV~~~L~-~A~~----~--~~f~ViV~Es-~P------~~eG----------~~ 92 (165)
++.|..+|+||++|..-++ +. .+.+-|. +..+ + ++++++..-+ .| ...| -.
T Consensus 5 aeEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp 84 (485)
T TIGR03458 5 ADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDP 84 (485)
T ss_pred HHHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCH
Confidence 3567778999999988765 22 2233332 2221 1 3556554211 11 1111 01
Q ss_pred HHHHHhhcC-CceEEEccchHHHhch-----hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 93 LAVSLAKSK-IQTVLIPDSAMFGLIS-----RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 93 la~~L~~~G-I~v~~I~dsav~~~m~-----~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
..+++.+.| ++.+-+.-+.+...+. ++|.+++-+.-.-.+|.+.--........+|+. ...|++-
T Consensus 85 ~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~a-Ak~VIvE 155 (485)
T TIGR03458 85 TLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLEL-ADKVIVE 155 (485)
T ss_pred HHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHh-CCEEEEE
Confidence 234555555 6777777788877774 589999998888888877655444333333443 3445554
No 204
>PRK13566 anthranilate synthase; Provisional
Probab=62.13 E-value=46 Score=32.19 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=50.9
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc--hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCC
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI--SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYS 152 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m--~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~ 152 (165)
+..+|.++|-...+ -..+++.|++.|.+|+++....-...+ .+.|.||+..- .|. ....+...+-..|...+
T Consensus 525 ~g~~IlvID~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgG----pgs-p~d~~~~~lI~~a~~~~ 598 (720)
T PRK13566 525 EGKRVLLVDHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPG----PGR-PSDFDCKATIDAALARN 598 (720)
T ss_pred CCCEEEEEECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCC----CCC-hhhCCcHHHHHHHHHCC
Confidence 45688888877543 457899999999999998865422222 34677666210 011 22334555556666789
Q ss_pred CcEEEEe
Q psy2575 153 IPYPCTF 159 (165)
Q Consensus 153 vPv~V~~ 159 (165)
+|++-+|
T Consensus 599 iPILGIC 605 (720)
T PRK13566 599 LPIFGVC 605 (720)
T ss_pred CcEEEEe
Confidence 9999877
No 205
>PRK15029 arginine decarboxylase; Provisional
Probab=61.96 E-value=51 Score=32.11 Aligned_cols=82 Identities=10% Similarity=0.050 Sum_probs=51.2
Q ss_pred EEEEecCCCCC-------hHHHHHHHHhhcCCceEEEccch--HHHhch--hCCEEEEccceeecCCCeeehhcHHHHHH
Q psy2575 78 QCIVMENSPEN-------KGHELAVSLAKSKIQTVLIPDSA--MFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVAL 146 (165)
Q Consensus 78 ~ViV~Es~P~~-------eG~~la~~L~~~GI~v~~I~dsa--v~~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl 146 (165)
+|+++|..+.. --..+.+.|++.|.+|....+.. +..+-. +.|.|++ |.-++++.-.. .|...+-.
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 57888877742 34567899999999999888543 333323 4788888 45567665222 11222222
Q ss_pred HH-hhCCCcEEEEeecc
Q psy2575 147 AA-QHYSIPYPCTFLLN 162 (165)
Q Consensus 147 ~A-k~~~vPv~V~~~~~ 162 (165)
+- +..++||++++..+
T Consensus 79 IR~~~~~iPIIlLTar~ 95 (755)
T PRK15029 79 LHERQQNVPVFLLGDRE 95 (755)
T ss_pred HHhhCCCCCEEEEEcCC
Confidence 22 23589999997654
No 206
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=61.75 E-value=33 Score=26.49 Aligned_cols=82 Identities=9% Similarity=0.015 Sum_probs=42.7
Q ss_pred EEEecCCCCChHHHHHHHHhhcC---CceEEEccchH--HHhchhCCEEEEccceeec-CCCeeehhcHHHHHHHHhhCC
Q psy2575 79 CIVMENSPENKGHELAVSLAKSK---IQTVLIPDSAM--FGLISRVNKIIIGTHTVMA-NGGLRSVCGTHAVALAAQHYS 152 (165)
Q Consensus 79 ViV~Es~P~~eG~~la~~L~~~G---I~v~~I~dsav--~~~m~~v~~VllGAd~V~~-nG~vvnk~GT~~lAl~Ak~~~ 152 (165)
+.|++.++..+...+.+-|++.| +++.++.-..- ..-+.++|.++++--.... ....--.-....+...+...+
T Consensus 2 i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~ 81 (188)
T cd01741 2 ILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAG 81 (188)
T ss_pred EEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCC
Confidence 34444444443556777888877 66666543221 1235678888876432211 101000012233334455678
Q ss_pred CcEEEEee
Q psy2575 153 IPYPCTFL 160 (165)
Q Consensus 153 vPv~V~~~ 160 (165)
+|++-+|-
T Consensus 82 ~pilgiC~ 89 (188)
T cd01741 82 KPVLGICL 89 (188)
T ss_pred CCEEEECc
Confidence 99998774
No 207
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=61.55 E-value=47 Score=31.04 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=56.9
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc-----hhCCEEEEcc
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI-----SRVNKIIIGT 126 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m-----~~v~~VllGA 126 (165)
.+.|+..||++.-+..-+... .....+++.|..|. .++.+++.|.++.+- |..-...+ .+++.+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~-~~g~~vvvID~d~~-----~v~~~~~~g~~v~~G-Dat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLM-ANKMRITVLERDIS-----AVNLMRKYGYKVYYG-DATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred cCCEEEecCchHHHHHHHHHH-hCCCCEEEEECCHH-----HHHHHHhCCCeEEEe-eCCCHHHHHhcCCccCCEEEEEe
Confidence 357888898876655444433 35567888888775 567778889887666 44444444 3566666554
Q ss_pred ceeecCCCeeehhcHHHHHHHHhhCC--CcEEEEe
Q psy2575 127 HTVMANGGLRSVCGTHAVALAAQHYS--IPYPCTF 159 (165)
Q Consensus 127 d~V~~nG~vvnk~GT~~lAl~Ak~~~--vPv~V~~ 159 (165)
+- ..-+..++..+|+++ .|+++-+
T Consensus 473 ~d---------~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 473 NE---------PEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred CC---------HHHHHHHHHHHHHHCCCCeEEEEe
Confidence 33 233455777788764 4555433
No 208
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=61.49 E-value=81 Score=26.04 Aligned_cols=86 Identities=7% Similarity=0.027 Sum_probs=44.1
Q ss_pred EEEEecC-CHHHHHHHHHHHhCCceEEE-EecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeec
Q psy2575 54 IILTLGY-SKIVELFLKNAAQHRKFQCI-VMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMA 131 (165)
Q Consensus 54 ~ILT~g~-S~tV~~~L~~A~~~~~f~Vi-V~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~ 131 (165)
.|..+|. +..=...+..+.+.+.+++. +++..|...... ...|+++ . ..+..++.++|.|+.-+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----~~~~i~~--~--~dl~~ll~~~DvVid~t----- 68 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----GALGVAI--T--DDLEAVLADADVLIDFT----- 68 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----CCCCccc--c--CCHHHhccCCCEEEECC-----
Confidence 5777886 54444444444434557755 456555432111 2333321 1 12333445566555332
Q ss_pred CCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 132 NGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 132 nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.......++..|-++++||++-
T Consensus 69 -----~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 69 -----TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -----CHHHHHHHHHHHHHcCCCEEEE
Confidence 3444566777777777777743
No 209
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=61.33 E-value=6.4 Score=35.10 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=26.0
Q ss_pred hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 115 LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 115 ~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
.+.++|.||.|-=.+ ..-++.. .....+|.+|+.|+|||+++|..
T Consensus 281 ~l~~aDlVITGEG~~-D~Qtl~G-K~p~~Va~~A~~~~vPviav~G~ 325 (377)
T PF02595_consen 281 RLEDADLVITGEGRL-DAQTLAG-KVPGGVARLAKKHGVPVIAVAGS 325 (377)
T ss_dssp HCCC-SEEEE--CEC-STTTTTT-CHHHHHHCCHCCTT--EEEEECE
T ss_pred HhcCCCEEEECcccc-ccccCCC-cHHHHHHHHHHHcCCcEEEEeCC
Confidence 445799999986332 2212222 34556788899999999999864
No 210
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=61.30 E-value=66 Score=25.14 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=43.8
Q ss_pred eEEEEecCCCCChHHHHHHHHhhcCCceEEEccchH-HHhchhCCEEEEcc-ceeecCCCeeehhcHHHHHHHHh-hCCC
Q psy2575 77 FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAM-FGLISRVNKIIIGT-HTVMANGGLRSVCGTHAVALAAQ-HYSI 153 (165)
Q Consensus 77 f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav-~~~m~~v~~VllGA-d~V~~nG~vvnk~GT~~lAl~Ak-~~~v 153 (165)
.+|++++..+.+ +..+++.|++.|+++.++..... ..-+.++|.+++.. -.. -...+-. ..++.+ ..++
T Consensus 2 ~~iliid~~dsf-~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~------~~~~~~~-~~~i~~~~~~~ 73 (190)
T PRK06895 2 TKLLIINNHDSF-TFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDV------PRAYPQL-FAMLERYHQHK 73 (190)
T ss_pred cEEEEEeCCCch-HHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCC------hHHhhHH-HHHHHHhcCCC
Confidence 367888877665 44589999999999998873211 22345677777432 110 0112221 223322 3489
Q ss_pred cEEEEe
Q psy2575 154 PYPCTF 159 (165)
Q Consensus 154 Pv~V~~ 159 (165)
|++-+|
T Consensus 74 PiLGIC 79 (190)
T PRK06895 74 SILGVC 79 (190)
T ss_pred CEEEEc
Confidence 999777
No 211
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=61.28 E-value=1.1e+02 Score=26.36 Aligned_cols=119 Identities=9% Similarity=0.046 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHhcc------cCCC-CEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceE
Q psy2575 34 ANPTSDTAPSQACEH------IHSN-EIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTV 105 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~------I~~~-~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~ 105 (165)
....++.|+++-.+. +... .+++|-|.+..+..++....+ |....|++. .|.+.+.... ....|.++.
T Consensus 66 ~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~ 141 (393)
T TIGR03538 66 LPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPY 141 (393)
T ss_pred CHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEE
Confidence 356788899877543 4443 466677777665555554333 332334444 5666654443 345677776
Q ss_pred EEccc----------hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 106 LIPDS----------AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 106 ~I~ds----------av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.++.. .+...+ +++..+++- .-=-+-|.++.+-=-..++-.|+++++++++
T Consensus 142 ~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 142 FLNCTAENGFLPDFDAVPESVWRRCQLLFVC-SPGNPTGAVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred EeeccccCCCCCCHHHHHHHHhhcceEEEEe-CCCCCcCcccCHHHHHHHHHHHHHCCEEEEE
Confidence 66531 111111 234444442 1112234444444346678888888887653
No 212
>PRK09135 pteridine reductase; Provisional
Probab=61.28 E-value=27 Score=27.21 Aligned_cols=100 Identities=11% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcC-CceEE-Ec----cchHHHhch-------
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSK-IQTVL-IP----DSAMFGLIS------- 117 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~G-I~v~~-I~----dsav~~~m~------- 117 (165)
.+.+|++.|.++-+=..+......+..+|+++..++......+...+.+.+ -.+.. .. ..++..++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456888888877664444333333567888887665444455666665432 11221 22 233444444
Q ss_pred hCCEEEEccceeec----CCC--------eeehhcHHHHHHHHhh
Q psy2575 118 RVNKIIIGTHTVMA----NGG--------LRSVCGTHAVALAAQH 150 (165)
Q Consensus 118 ~v~~VllGAd~V~~----nG~--------vvnk~GT~~lAl~Ak~ 150 (165)
++|.|+-.|-.... +-. -.|-.|+..+.-++..
T Consensus 85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 129 (249)
T PRK09135 85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP 129 (249)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHH
Confidence 35777766532111 000 0577888888877753
No 213
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=61.14 E-value=58 Score=23.31 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=47.9
Q ss_pred CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc------cchHHHhc-h--hCCEEEEccceeecCCCe--eehhcHH
Q psy2575 74 HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP------DSAMFGLI-S--RVNKIIIGTHTVMANGGL--RSVCGTH 142 (165)
Q Consensus 74 ~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~------dsav~~~m-~--~v~~VllGAd~V~~nG~v--vnk~GT~ 142 (165)
...|+++.++ -.++.|++.|++|+.+. +..+...+ . ++|+|+-=.+ |.- -.....+
T Consensus 23 ~~G~~i~AT~--------gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~-----~~~~~~~~~dg~ 89 (112)
T cd00532 23 SDGFPLFATG--------GTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD-----PRRDRCTDEDGT 89 (112)
T ss_pred HCCCEEEECc--------HHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC-----CCcccccCCChH
Confidence 4678988774 26888899999988752 12233333 3 4788876443 221 1355678
Q ss_pred HHHHHHhhCCCcEEE
Q psy2575 143 AVALAAQHYSIPYPC 157 (165)
Q Consensus 143 ~lAl~Ak~~~vPv~V 157 (165)
.+=.+|-.++||++.
T Consensus 90 ~iRR~A~~~~Ip~~T 104 (112)
T cd00532 90 ALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHHHHHcCCCEEE
Confidence 899999999999874
No 214
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=61.10 E-value=85 Score=27.51 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=41.3
Q ss_pred CCceEEEEecCCCCChHHHHHHHHh-hcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCC
Q psy2575 74 HRKFQCIVMENSPENKGHELAVSLA-KSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYS 152 (165)
Q Consensus 74 ~~~f~ViV~Es~P~~eG~~la~~L~-~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~ 152 (165)
.+.++|.+.|.++...-....+.|. ..|+.+..-.+ ...+.++|.|+.++ +|-++ .+.-..|++.+
T Consensus 20 ~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~---~~~~~~~d~vv~sp-~i~~~---------~p~~~~a~~~~ 86 (433)
T TIGR01087 20 KKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH---LEDLNNADLVVKSP-GIPPD---------HPLVQAAAKRG 86 (433)
T ss_pred HCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc---hHHhccCCEEEECC-CCCCC---------CHHHHHHHHCC
Confidence 3668999999877643222112233 35887754322 23457788887776 22222 35566677777
Q ss_pred CcEE
Q psy2575 153 IPYP 156 (165)
Q Consensus 153 vPv~ 156 (165)
+|++
T Consensus 87 i~i~ 90 (433)
T TIGR01087 87 IPVV 90 (433)
T ss_pred CcEE
Confidence 7775
No 215
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.04 E-value=30 Score=29.71 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=20.8
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCC
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSP 86 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P 86 (165)
.|..|++.|+|.+|=+-|.....++.-+|+++.++.
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 456666666666665555444444455666666543
No 216
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=60.88 E-value=74 Score=24.86 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=24.6
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceE
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTV 105 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~ 105 (165)
.++++.|.+.-+=..|.+....+..+|+++..++. ....+...+...+-++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~ 53 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEA-GAEAAAKVATDAGGSVI 53 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCceE
Confidence 35666666554433333222224457777755442 23344455554443443
No 217
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=60.83 E-value=1e+02 Score=26.01 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=59.3
Q ss_pred HHHHHHHHhcccCC---CCEEEEecC-CHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccch--
Q psy2575 38 SDTAPSQACEHIHS---NEIILTLGY-SKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSA-- 111 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~---~~~ILT~g~-S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsa-- 111 (165)
.+.+.+...+++.. .+.|+..+. |..+...+..... +.=+|++.+ +...|..+...+...|+++..++...
T Consensus 39 ~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~-~~~~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 115 (368)
T PRK13479 39 TASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP-RDGKVLVPD--NGAYGARIAQIAEYLGIAHVVLDTGEDE 115 (368)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC-CCCeEEEEe--CCchHHHHHHHHHHcCCcEEEEECCCCC
Confidence 44444444555543 244544444 4445555554433 333566654 34445555566677899988887531
Q ss_pred ------HHHhchhCC--EEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 112 ------MFGLISRVN--KIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 112 ------v~~~m~~v~--~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+...+.+-+ +++.-+..=.+.|.+ +. ...++-+|++++++++|=+
T Consensus 116 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~-~~--~~~i~~l~~~~~~~livDa 168 (368)
T PRK13479 116 PPDAAEVEAALAADPRITHVALVHCETTTGIL-NP--LDEIAAVAKRHGKRLIVDA 168 (368)
T ss_pred CCCHHHHHHHHHhCCCCcEEEEEcccCccccc-cC--HHHHHHHHHHcCCEEEEEc
Confidence 112222111 122211111234433 33 3578899999999887743
No 218
>PRK05967 cystathionine beta-lyase; Provisional
Probab=60.79 E-value=1.2e+02 Score=26.91 Aligned_cols=98 Identities=9% Similarity=0.002 Sum_probs=57.0
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH-HHH-HHHhhcCCceEEEccc---hHHHhch-hCCEEEEcc
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH-ELA-VSLAKSKIQTVLIPDS---AMFGLIS-RVNKIIIGT 126 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~-~la-~~L~~~GI~v~~I~ds---av~~~m~-~v~~VllGA 126 (165)
+.|++.|.+..+...+....+ ..-+|++. .|.+.|- .+. ..+...|++++++... .+...++ +...|++-.
T Consensus 81 ~~v~~sSG~aAi~~~l~all~-~GD~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~les 157 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLS-PGDHALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEA 157 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcC-CCCEEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEEC
Confidence 577777755555555544433 34467776 4555553 333 5677899999998642 3555553 344444432
Q ss_pred ceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 127 HTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 127 d~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
++.-.....=-..++-+|++++++++|
T Consensus 158 ----PsNP~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 158 ----PGSNTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred ----CCCCCCcHHHHHHHHHHHHHhCCEEEE
Confidence 111233333345688889999998876
No 219
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=60.59 E-value=1.1e+02 Score=26.34 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcc---cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc--
Q psy2575 35 NPTSDTAPSQACEH---IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD-- 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~---I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d-- 109 (165)
...++.|+++-... +....+++|-|.+..+..++.... +..-+|++. .|.+... ...+...|+.+..++.
T Consensus 76 ~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~v~i~--~P~y~~~--~~~~~~~g~~v~~~~~~~ 150 (401)
T TIGR01264 76 LSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALA-NAGQNILVP--RPGFPLY--ETLAESMGIEVKLYNLLP 150 (401)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhC-CCCCEEEEe--CCCChhH--HHHHHHcCCEEEEeecCC
Confidence 55678888766432 445567777776665544444332 233456665 3655432 3445567887766542
Q ss_pred --------chHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 --------SAMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 --------sav~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..+...++ +...+++. .-=-+.|.++..-=-..++-.|+++++++++
T Consensus 151 ~~~~~~d~~~l~~~~~~~~~~v~~~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 151 DKSWEIDLKQLESLIDEKTAALIVN-NPSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred ccCCCCCHHHHHHHhccCceEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 11222222 23344432 1112334444433345677788888887764
No 220
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=60.57 E-value=44 Score=26.94 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=18.8
Q ss_pred eehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 136 RSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 136 vnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
.|..|+..++-+|+..+++|+.++.
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss 100 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHIST 100 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEee
Confidence 3457899999999888877766543
No 221
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=60.55 E-value=25 Score=29.20 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=53.7
Q ss_pred HHHHHH-hcccCCCCEEEEecCCHHHHHHHHHHHh--CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc
Q psy2575 40 TAPSQA-CEHIHSNEIILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI 116 (165)
Q Consensus 40 ~Ia~~a-~~~I~~~~~ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m 116 (165)
.++.+. ..+.+-|-.+..+...... ...+.. ...+-+++.-++...+-..+++..++.|+++..|++..-..+-
T Consensus 153 ~~A~~l~~~l~~~g~~~~~~~d~~~~---~~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la 229 (292)
T PRK11337 153 AIARDVQHKFLRIGVRCQAYDDAHIM---LMSAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIA 229 (292)
T ss_pred HHHHHHHHHHhhCCCeEEEcCCHHHH---HHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 344444 3344556555555332221 111211 3445555666666667777899999999999999999888888
Q ss_pred hhCCEEEEcc
Q psy2575 117 SRVNKIIIGT 126 (165)
Q Consensus 117 ~~v~~VllGA 126 (165)
+.+|.+|.-.
T Consensus 230 ~~ad~~l~~~ 239 (292)
T PRK11337 230 KLADYVICST 239 (292)
T ss_pred HhCCEEEEcC
Confidence 8899999644
No 222
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=60.51 E-value=80 Score=26.11 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=63.9
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceE-------EEEecCCC--------CChHHHHHHHHhhcCCceEEEccc-----
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQ-------CIVMENSP--------ENKGHELAVSLAKSKIQTVLIPDS----- 110 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~-------ViV~Es~P--------~~eG~~la~~L~~~GI~v~~I~ds----- 110 (165)
....|++||.++.+...+....-..+|. .-+++.+. ..-...++..|++.|++..-++..
T Consensus 24 g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~~ln~~iv~~L~~~Gi~a~~l~~~~~~~~ 103 (257)
T cd04251 24 GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMGLINKKIVARLHSLGVKAVGLTGLDGRLL 103 (257)
T ss_pred CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecccccCCEE
Confidence 3469999999998877665432123331 01111111 111245577888889876554432
Q ss_pred ---------------------------------hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 ---------------------------------AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 ---------------------------------av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+..++.+-..++++.=+.-.+|...|--+=...+.+|...+-.-++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li 183 (257)
T cd04251 104 EAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLI 183 (257)
T ss_pred EEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEE
Confidence 22233444456777544445678888888888888899888765444
Q ss_pred E
Q psy2575 158 T 158 (165)
Q Consensus 158 ~ 158 (165)
+
T Consensus 184 ~ 184 (257)
T cd04251 184 L 184 (257)
T ss_pred E
Confidence 3
No 223
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=60.29 E-value=1e+02 Score=25.88 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=56.1
Q ss_pred HHHHHHHhcccC--CCCEEEEecCCHHHHHHHHHHHh-----CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc-
Q psy2575 39 DTAPSQACEHIH--SNEIILTLGYSKIVELFLKNAAQ-----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS- 110 (165)
Q Consensus 39 ~~Ia~~a~~~I~--~~~~ILT~g~S~tV~~~L~~A~~-----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds- 110 (165)
+.+.+..++++. +...+++.|.+......+..+.. ++.-+|++.+ |...+ +.+..+..|+++..++..
T Consensus 62 ~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~--~~h~~--~~~~~~~~G~~~~~v~~~~ 137 (373)
T TIGR03812 62 EEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPE--SAHFS--FEKAAEMLGLELRYAPLDE 137 (373)
T ss_pred HHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECC--cchHH--HHHHHHHcCCeEEEEeeCC
Confidence 445555556665 34566776654443333332221 2335677765 33322 334455678888877632
Q ss_pred -------hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 -------AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 -------av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+...+.+-+..++-...-.+.|.+ .. --.++-+|++++++++|
T Consensus 138 ~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~-~~--~~~i~~l~~~~~~~liv 188 (373)
T TIGR03812 138 DYTVDVKDVEDLIDDNTIGIVGIAGTTELGQI-DD--IEELSKIALENGIYLHV 188 (373)
T ss_pred CCCcCHHHHHHHHhhCcEEEEEECCCCCCCcc-CC--HHHHHHHHHHcCCeEEE
Confidence 1222232222212111122344443 22 34678889999998886
No 224
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=60.18 E-value=1.3e+02 Score=26.84 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=54.7
Q ss_pred hcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH--HHHHHHhhcCCceEEEccc---hHHHhchh-C
Q psy2575 46 CEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH--ELAVSLAKSKIQTVLIPDS---AMFGLISR-V 119 (165)
Q Consensus 46 ~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~--~la~~L~~~GI~v~~I~ds---av~~~m~~-v 119 (165)
+++......+++-+.+..+...|.... +..-+|++.. |.+.|. .+...+...|+.+.+++.. .+...+.. .
T Consensus 73 A~l~g~~~al~~~SG~~Ai~~al~all-~pGd~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~t 149 (427)
T PRK05994 73 AALEGGTAALAVASGHAAQFLVFHTLL-QPGDEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRT 149 (427)
T ss_pred HHHhCCCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCC
Confidence 334333344444444444444444333 3445666654 444443 2334467789999888633 33344433 3
Q ss_pred CEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 120 NKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 120 ~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..|++ ..---+.|.+. . -..++-+|+++++++++
T Consensus 150 klV~v-esp~NptG~v~-d--l~~I~~la~~~gi~liv 183 (427)
T PRK05994 150 KAIFI-ESIANPGGTVT-D--IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred eEEEE-ECCCCCCCeec-C--HHHHHHHHHHcCCEEEE
Confidence 33443 22222334333 3 34688889999999886
No 225
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=60.02 E-value=15 Score=25.59 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=43.7
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCc----eEEEccc---h----HHHhch--hCCEEEEccceeecCCCeeeh-hc
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQ----TVLIPDS---A----MFGLIS--RVNKIIIGTHTVMANGGLRSV-CG 140 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~----v~~I~ds---a----v~~~m~--~v~~VllGAd~V~~nG~vvnk-~G 140 (165)
..|+++-++ -.++.|++.||+ +.++... . +...|+ ++|+|+.=.+. .--.. .-
T Consensus 12 lG~~i~AT~--------gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~-----~~~~~~~d 78 (95)
T PF02142_consen 12 LGFEIYATE--------GTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP-----FSDQEHTD 78 (95)
T ss_dssp TTSEEEEEH--------HHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T-----HHHHHTHH
T ss_pred CCCEEEECh--------HHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC-----CcccccCC
Confidence 458988874 478999999999 4444444 1 445554 37877754332 22222 36
Q ss_pred HHHHHHHHhhCCCcEE
Q psy2575 141 THAVALAAQHYSIPYP 156 (165)
Q Consensus 141 T~~lAl~Ak~~~vPv~ 156 (165)
.+.+-.+|-.++||.+
T Consensus 79 g~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 79 GYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHHHHTTSHEE
T ss_pred cHHHHHHHHHcCCCCc
Confidence 7899999999999975
No 226
>PRK12320 hypothetical protein; Provisional
Probab=59.74 E-value=63 Score=31.18 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=53.3
Q ss_pred EEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEE--EccchHHHhchhCCEEEEccceeec
Q psy2575 54 IILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVL--IPDSAMFGLISRVNKIIIGTHTVMA 131 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~--I~dsav~~~m~~v~~VllGAd~V~~ 131 (165)
+||+.|.+.-+=.-|......+..+|++++..|.. +...+++... +.|..+...+..+|.|+--|.....
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~~ 73 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVDTS 73 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccCcc
Confidence 47777765444332322222244677777654321 1111222211 1233344456677877766533211
Q ss_pred CCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 132 NGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 132 nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+..-.|..|+.+++-+|++.+++++.+.
T Consensus 74 ~~~~vNv~Gt~nLleAA~~~GvRiV~~S 101 (699)
T PRK12320 74 APGGVGITGLAHVANAAARAGARLLFVS 101 (699)
T ss_pred chhhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 2123678999999999999999876654
No 227
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=59.63 E-value=90 Score=25.01 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=39.3
Q ss_pred CCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
+.+|.+.+.+.+...+-..++. +.++.|++.+..| ..-.+.++..|.++..+..+
T Consensus 50 ~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~----~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 50 KGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGAS----PEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHCCCEEEEECCC
Confidence 5788888888777665555555 7788888776654 23456677788888888765
No 228
>PRK02948 cysteine desulfurase; Provisional
Probab=59.62 E-value=1.1e+02 Score=26.00 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=53.7
Q ss_pred HHHhcccC--CCCEEEEecCCHHHHHHHHHHHh---CCceEEEEecCCCCChH-HHHHHHHhhcCCceEEEccch-----
Q psy2575 43 SQACEHIH--SNEIILTLGYSKIVELFLKNAAQ---HRKFQCIVMENSPENKG-HELAVSLAKSKIQTVLIPDSA----- 111 (165)
Q Consensus 43 ~~a~~~I~--~~~~ILT~g~S~tV~~~L~~A~~---~~~f~ViV~Es~P~~eG-~~la~~L~~~GI~v~~I~dsa----- 111 (165)
+..++++. +..+++|-|.+......+....+ ++.-+|++.+ +...+ ....+.+...|+++..++...
T Consensus 50 ~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d 127 (381)
T PRK02948 50 KTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTP--MEHASIHSYFQSLESQGYTVTEIPVDKSGLIR 127 (381)
T ss_pred HHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECC--cccHHHHHHHHHHHhCCCEEEEEeeCCCCCCC
Confidence 33344553 34555665444443334433322 2233455432 22222 233556677898888886321
Q ss_pred ---HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 112 ---MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 112 ---v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+...+++-+++++=...-.+.|.+.. . ..++-+|++++++++|=
T Consensus 128 ~~~l~~~l~~~~~lv~~~~~~n~tG~~~~-~--~~I~~l~~~~~~~vivD 174 (381)
T PRK02948 128 LVDLERAITPDTVLASIQHANSEIGTIQP-I--AEIGALLKKYNVLFHSD 174 (381)
T ss_pred HHHHHHhcCCCCEEEEEECCcCCcEeehh-H--HHHHHHHHHcCCEEEEE
Confidence 22222222233332223334444433 2 35778889999888763
No 229
>PRK08912 hypothetical protein; Provisional
Probab=59.58 E-value=1.1e+02 Score=26.10 Aligned_cols=117 Identities=10% Similarity=0.113 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcc----cCCC-CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 35 NPTSDTAPSQACEH----IHSN-EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~~~-~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
.+.++.++++-.++ +... ++++|.|.+..+...+.... +..-+|++.+ |.+.+.. ..+...|.++..++.
T Consensus 66 ~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~--p~y~~~~--~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 66 PELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV-EPGDEVVLFQ--PLYDAYL--PLIRRAGGVPRLVRL 140 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeC--CCchhhH--HHHHHcCCEEEEEec
Confidence 57788898775432 3444 78888888776654444332 2334666654 6655433 334567777665542
Q ss_pred c---------hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 S---------AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 s---------av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. .+...+ +++..+++- ..--+.|.+..+.=-..++-.|+++++++++
T Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~v~l~-~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 141 EPPHWRLPRAALAAAFSPRTKAVLLN-NPLNPAGKVFPREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred CcccCcCCHHHHHHHhCccceEEEEe-CCCCCcCcccCHHHHHHHHHHHHHCCeEEEE
Confidence 1 111222 233334332 2222333333332233477788888887654
No 230
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=59.42 E-value=79 Score=27.26 Aligned_cols=107 Identities=7% Similarity=-0.048 Sum_probs=55.0
Q ss_pred cccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc----chHHHhchhCCEE
Q psy2575 47 EHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD----SAMFGLISRVNKI 122 (165)
Q Consensus 47 ~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d----sav~~~m~~v~~V 122 (165)
.+...+.+|++.|.+--+=.-|......+.++|+.+..++.. .+ .. ...++.. ...| ..+..++.++|.|
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~---~~-~~-~~~~~~~-~~~Dl~d~~~~~~~~~~~D~V 89 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNE---HM-SE-DMFCHEF-HLVDLRVMENCLKVTKGVDHV 89 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccc---cc-cc-ccccceE-EECCCCCHHHHHHHHhCCCEE
Confidence 356678888988876555333333333245677776543221 00 00 0011121 1122 2234456678887
Q ss_pred EEccceee------cCC---CeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 123 IIGTHTVM------ANG---GLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 123 llGAd~V~------~nG---~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+--|-.+- .+- .-.|-.|+..++-+|+++++.-+|.+
T Consensus 90 ih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~ 135 (370)
T PLN02695 90 FNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYA 135 (370)
T ss_pred EEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 75542211 010 01356799999999999987555443
No 231
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=59.38 E-value=22 Score=25.20 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=29.0
Q ss_pred hHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccc
Q psy2575 89 KGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTH 127 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd 127 (165)
+-.+.++.+++.|.++..|+++.-..+-+.+|.+|.-..
T Consensus 68 ~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~ 106 (131)
T PF01380_consen 68 ELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPT 106 (131)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEES
T ss_pred hhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecC
Confidence 445567778888888888888877777777887775543
No 232
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=59.22 E-value=74 Score=27.72 Aligned_cols=98 Identities=13% Similarity=0.213 Sum_probs=59.7
Q ss_pred HHHHHHHHHH----hcccCCCCEEEEecCCHHHHHHHHHHHh--CCceEEEEecCCCC-----C----hHHHHHHHHhhc
Q psy2575 36 PTSDTAPSQA----CEHIHSNEIILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSPE-----N----KGHELAVSLAKS 100 (165)
Q Consensus 36 ~~~~~Ia~~a----~~~I~~~~~ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P~-----~----eG~~la~~L~~~ 100 (165)
...+.++..+ .+.|++|+ ++-+||++|+..+.....- .++.+|+-+=..+. + --..+|+++...
T Consensus 95 ~~~~~lg~aaA~~l~~~l~~gd-vigV~wGrTv~a~~~~l~~~~~~~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~~~~ 173 (321)
T COG2390 95 SILRRLGRAAAQYLESLLKPGD-VIGVGWGRTLSAVVDNLPPAPLRDVKVVQLTGGVGHADGSYNANTIALRLAEKLGAE 173 (321)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-EEEEeccHHHHHHHHhcCcCccCCeEEEECCCCCCCCccccCHHHHHHHHHHHhCCc
Confidence 3444455555 45668899 7788999999998887654 35566665433332 1 124456665543
Q ss_pred C--CceEEEccchH-HH-------------hchhCCEEEEccceeecCCC
Q psy2575 101 K--IQTVLIPDSAM-FG-------------LISRVNKIIIGTHTVMANGG 134 (165)
Q Consensus 101 G--I~v~~I~dsav-~~-------------~m~~v~~VllGAd~V~~nG~ 134 (165)
. +++-++.++.- .. ..+++|+.|+|.=.+.++..
T Consensus 174 ~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~~~~ad~alvGIG~~~~~~~ 223 (321)
T COG2390 174 SYLLPAPLVASSPELREALLQEPSVREVLDLARSADLALVGIGSLSANST 223 (321)
T ss_pred EEeeecCccCCCHHHHHHHHhCcHHHHHHHHHHhCCEEEEecCCCcccch
Confidence 2 44545555522 11 22469999999877776643
No 233
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=59.21 E-value=17 Score=26.23 Aligned_cols=59 Identities=7% Similarity=0.037 Sum_probs=37.8
Q ss_pred HHHHhhcCCceEEE--ccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 94 AVSLAKSKIQTVLI--PDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 94 a~~L~~~GI~v~~I--~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
-+.+.+.|+++++. +.+.+...+.++|.+++|+..=+.- -.+--.|..+++||-++-+.
T Consensus 21 ~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~---------~~i~~~~~~~~ipv~~I~~~ 81 (99)
T cd05565 21 NKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYY---------DELKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred HHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHH---------HHHHHHhhhcCCCEEEeCHH
Confidence 34455677765544 4555666788899999998652211 12445667789999887543
No 234
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=59.17 E-value=23 Score=33.97 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHHhCCceEEEEe-cCCCCCh-HHHHHHHHhhcCCceEEEc
Q psy2575 59 GYSKIVELFLKNAAQHRKFQCIVM-ENSPENK-GHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 59 g~S~tV~~~L~~A~~~~~f~ViV~-Es~P~~e-G~~la~~L~~~GI~v~~I~ 108 (165)
+.|+.|...+..|..||+.+|.|= -.|-..| ...-|+.|.++|+.|.|-.
T Consensus 382 ~dSpIV~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvhVvyG~ 433 (696)
T COG0855 382 KDSPIVRALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVHVVYGV 433 (696)
T ss_pred CCCHHHHHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcEEEecc
Confidence 345555544444444777776652 2333322 2455999999999987753
No 235
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=59.08 E-value=21 Score=25.96 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCceEEEccch--HHHh--chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 91 HELAVSLAKSKIQTVLIPDSA--MFGL--ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsa--v~~~--m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
+.++.+|.+.|.++..+.... ...+ .+++..|++..| +.--....-..=.+-.+.+++||+++.+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~ 76 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAER 76 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESC
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecC
Confidence 456888888888888887554 2333 245788888877 11111111222234556789999999873
No 236
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=59.07 E-value=1.3e+02 Score=26.57 Aligned_cols=113 Identities=9% Similarity=0.031 Sum_probs=59.5
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHHH-HHHhhcCCceEEEccc---hH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HELA-VSLAKSKIQTVLIPDS---AM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~la-~~L~~~GI~v~~I~ds---av 112 (165)
.+...+.-+++.....+++|-|.+..+..++....+ +.-+|++. .|.+.+ ..+. ..+...|++++++... .+
T Consensus 55 ~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~-~Gd~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l 131 (388)
T PRK08861 55 RGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLG-PDDLIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAAL 131 (388)
T ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC-CCCEEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Confidence 334444444455544555555555455545543332 33455554 465554 3443 3345678998887632 23
Q ss_pred HHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+. +...|++. .---+.|.++.. ..++-+|++++++++|
T Consensus 132 ~~~i~~~tklV~le-sP~NPtG~v~dl---~~I~~la~~~gi~vIv 173 (388)
T PRK08861 132 DAALAKKPKLILLE-TPSNPLVRVVDI---AELCQKAKAVGALVAV 173 (388)
T ss_pred HHhcCcCCeEEEEE-CCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 33333 34445543 122334555442 3678888999988876
No 237
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=59.03 E-value=99 Score=27.84 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=64.3
Q ss_pred EEEecCCHHHHHHHHHHHh-CCceEEEEe-cCCCCChH---HHHHHHHhhcCCceEEEccch--HHHhc---hhCCEEEE
Q psy2575 55 ILTLGYSKIVELFLKNAAQ-HRKFQCIVM-ENSPENKG---HELAVSLAKSKIQTVLIPDSA--MFGLI---SRVNKIII 124 (165)
Q Consensus 55 ILT~g~S~tV~~~L~~A~~-~~~f~ViV~-Es~P~~eG---~~la~~L~~~GI~v~~I~dsa--v~~~m---~~v~~Vll 124 (165)
|...+-++.+.++..=+.. .++ +|.+. .|.-+... +.+|+.|.+.|++|.++-++. ...++ .+++.+++
T Consensus 225 i~~~~~~~i~~~Y~~W~~~~~~~-~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 225 IWRGNPKEIVEAYRDWAEGQPKG-KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVV 303 (388)
T ss_pred eeeCCHHHHHHHHHHHHccCCcc-eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEE
Confidence 3333445555655553333 233 45544 44444433 344778889999888776443 55555 46899999
Q ss_pred ccceeecCCCeeehhcHHHHHHHHhhC-CCcEEEEe
Q psy2575 125 GTHTVMANGGLRSVCGTHAVALAAQHY-SIPYPCTF 159 (165)
Q Consensus 125 GAd~V~~nG~vvnk~GT~~lAl~Ak~~-~vPv~V~~ 159 (165)
|+-++. ++..-++++..--+.|... ++++.+..
T Consensus 304 GsPT~~--~~~~p~i~~~l~~v~~~~~~~k~~~vfg 337 (388)
T COG0426 304 GSPTIN--GGAHPPIQTALGYVLALAPKNKLAGVFG 337 (388)
T ss_pred ecCccc--CCCCchHHHHHHHHHhccCcCceEEEEe
Confidence 988764 4688889998888777774 56655543
No 238
>PRK08361 aspartate aminotransferase; Provisional
Probab=58.94 E-value=1.2e+02 Score=26.09 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHhcc----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 34 ANPTSDTAPSQACEH----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
....++.|+++-.+. +...++++|.|.+..+..++.... ++.-+|++.+ |.+.+. ...+...|+++..++.
T Consensus 72 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~g~~Vlv~~--p~y~~~--~~~~~~~g~~~~~v~~ 146 (391)
T PRK08361 72 IPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL-EEGDEVIIPD--PAFVCY--VEDAKIAEAKPIRIPL 146 (391)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc-CCCCEEEEcC--CCCccc--HHHHHHcCCEEEEEec
Confidence 467788888875432 555678888776655444444332 3344666664 554442 3344456777766642
Q ss_pred -c---------hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 -S---------AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 -s---------av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. .+...+ ++...+++. .---+.|.+....=-..++-.|+++++.+++
T Consensus 147 ~~~~~~~~d~~~l~~~i~~~~~~v~i~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 147 REENEFQPDPDELLELITKRTRMIVIN-YPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred CCccCCCCCHHHHHHhcccccEEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 1 111122 223333332 1222335544433335577778899887664
No 239
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=58.86 E-value=1.1e+02 Score=25.87 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc---
Q psy2575 34 ANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS--- 110 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds--- 110 (165)
....++.|+++- -+...++++|.|-+..+..++.. .. .. .+++. .|.+... ...++..|.++..++..
T Consensus 57 ~~~lr~~ia~~~--~~~~~~i~it~Ga~~~l~~~~~~-l~-~g-~viv~--~P~y~~~--~~~~~~~g~~~~~v~~~~~~ 127 (356)
T PRK08056 57 YRHLHQALARHH--QVPASWILAGNGETESIFAVVSG-LK-PR-RAMIV--TPGFAEY--RRALQQVGCEIRRYSLREAD 127 (356)
T ss_pred HHHHHHHHHHHh--CcChhhEEECCCHHHHHHHHHHH-hC-CC-CEEEe--CCCcHHH--HHHHHHcCCeEEEEeccccc
Confidence 356678888764 24555677777766555555443 33 22 45554 3665443 23445678877776531
Q ss_pred ------hH-HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 ------AM-FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 ------av-~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+ ..+-++...+++ +.-=-+.|.++.+-=-..++-.|+++++++++
T Consensus 128 ~~~~~~~~~~~~~~~~k~v~l-~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 128 GWQLTDAILEALTPDLDCLFL-CTPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCccHHHHHhccCCCCEEEE-eCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 11 111234555554 22223334433332244567778888888764
No 240
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.84 E-value=88 Score=28.19 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=38.9
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
+..|+.+|...+=.. +.+....+..+|.+.|.++..+. ...|.+.|+.+.+.........+..+|.|++.+
T Consensus 7 ~~~i~v~G~G~sG~s-~a~~L~~~G~~v~~~D~~~~~~~---~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVLGLGESGLA-MARWCARHGARLRVADTREAPPN---LAALRAELPDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred CCEEEEEeecHhHHH-HHHHHHHCCCEEEEEcCCCCchh---HHHHHhhcCCcEEEeCCCchhHhcCCCEEEECC
Confidence 456777665543333 22222235578999998875432 334777754444333222233445788888765
No 241
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=58.50 E-value=8.2 Score=34.17 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHhCCceEEEEecCCCCC-hH--HHHHHHHhhcCCceEEEc
Q psy2575 59 GYSKIVELFLKNAAQHRKFQCIVMENSPEN-KG--HELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 59 g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~-eG--~~la~~L~~~GI~v~~I~ 108 (165)
+.|+.+...+..|.+||+.+|+| |=+-++ |- ...|++|.++|+.|.|-.
T Consensus 48 ~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~ 99 (352)
T PF13090_consen 48 SNSPIVNALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGV 99 (352)
T ss_dssp TT-HHHHHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--
T ss_pred CCCHHHHHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCC
Confidence 56655555444444488888765 322222 22 345999999999998754
No 242
>PRK00942 acetylglutamate kinase; Provisional
Probab=58.42 E-value=1.1e+02 Score=25.55 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=65.9
Q ss_pred ccCCC-CEEEEecCCHHHHHHHHHHHhCCceE--EEEec--CCC-------CChHHHHHHHHhhcCCceEEEccc-----
Q psy2575 48 HIHSN-EIILTLGYSKIVELFLKNAAQHRKFQ--CIVME--NSP-------ENKGHELAVSLAKSKIQTVLIPDS----- 110 (165)
Q Consensus 48 ~I~~~-~~ILT~g~S~tV~~~L~~A~~~~~f~--ViV~E--s~P-------~~eG~~la~~L~~~GI~v~~I~ds----- 110 (165)
+...| ..|++||.++.+...+.......++. +.++. +.+ +.-...+...|++.|++..-++..
T Consensus 51 l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~~~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ 130 (283)
T PRK00942 51 LKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETMEVVEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLI 130 (283)
T ss_pred HHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHHHHHHHHcCchHHHHHHHHHhCCCCccceeeccCCEE
Confidence 33444 57999999998877776443222221 11111 101 112244678899989876544422
Q ss_pred -----------------------hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 111 -----------------------AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 111 -----------------------av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+..++.+-..+++..-++..+|.+.+--+=...+.+|+..+-.-+++
T Consensus 131 ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~ 201 (283)
T PRK00942 131 TAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLIL 201 (283)
T ss_pred EEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEE
Confidence 222334444566666555556788887777777888999998875554
No 243
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=58.28 E-value=12 Score=27.25 Aligned_cols=85 Identities=14% Similarity=0.209 Sum_probs=47.7
Q ss_pred EEEEecCCHHHHHHHHHHHh--CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc--hhCCEEEEcccee
Q psy2575 54 IILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI--SRVNKIIIGTHTV 129 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m--~~v~~VllGAd~V 129 (165)
.||++|..-- ++.|..+.. .+--+||+.-..|..... .+ .+++..-.-..+..+. .++|+|++|.+.-
T Consensus 2 kVLviGsGgR-EHAia~~l~~s~~v~~v~~aPGN~G~~~~------~~-~~~~~~~d~~~l~~~a~~~~idlvvvGPE~p 73 (100)
T PF02844_consen 2 KVLVIGSGGR-EHAIAWKLSQSPSVEEVYVAPGNPGTAEL------GK-NVPIDITDPEELADFAKENKIDLVVVGPEAP 73 (100)
T ss_dssp EEEEEESSHH-HHHHHHHHTTCTTEEEEEEEE--TTGGGT------SE-EE-S-TT-HHHHHHHHHHTTESEEEESSHHH
T ss_pred EEEEECCCHH-HHHHHHHHhcCCCCCEEEEeCCCHHHHhh------ce-ecCCCCCCHHHHHHHHHHcCCCEEEECChHH
Confidence 5788887733 555655544 344589988666653210 00 0111111111233333 3599999999999
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
+.+| ++=.-+..++|++
T Consensus 74 L~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 74 LVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp HHTT----------HHHHHHHTT-CEE
T ss_pred HHHH----------HHHHHHHCCCcEE
Confidence 9998 6666677888876
No 244
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=58.27 E-value=29 Score=27.09 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCceEEEccchHH-HhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 92 ELAVSLAKSKIQTVLIPDSAMF-GLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~dsav~-~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.+++.|.. |+++.++...... .-+.++|.|++|+-. -.|..-..+-.+.--....-.++|+.+.+
T Consensus 20 ~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi--~~G~~~~~~~~fl~~~~~~l~~K~v~~F~ 85 (177)
T PRK11104 20 YIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASI--RYGHFHSALYKFVKKHATQLNQMPSAFFS 85 (177)
T ss_pred HHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECcc--ccCCcCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44666666 8777776654432 246779999999855 23455544444443333445678888766
No 245
>PRK07681 aspartate aminotransferase; Provisional
Probab=58.26 E-value=1.2e+02 Score=26.10 Aligned_cols=118 Identities=10% Similarity=0.052 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHHhcc----cCC-CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc
Q psy2575 34 ANPTSDTAPSQACEH----IHS-NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~----I~~-~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ 108 (165)
....++.|+++-... +.. .++++|-|.+..+..++. +.-++.-+|++.+ |.+.+... .+...|+++..++
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~-~~~~~Gd~Vlv~~--P~y~~~~~--~~~~~G~~~~~v~ 145 (399)
T PRK07681 71 IQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPM-VYANPGDIILVPD--PGYTAYET--GIQMAGATSYYMP 145 (399)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHH-HhCCCCCEEEECC--CCccchHH--HHHhcCCEEEEEe
Confidence 356788888876542 554 567777776655544443 3323445666653 66554433 3446788877776
Q ss_pred cch-------HHHh---c-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 109 DSA-------MFGL---I-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 109 dsa-------v~~~---m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
... +..+ + +++..+++- .-=-+.|.++.+.=-..++-.|+++++++++
T Consensus 146 ~~~~~~~~~d~~~l~~~~~~~~k~v~l~-~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~ 204 (399)
T PRK07681 146 LKKENDFLPDLELIPEEIADKAKMMILN-FPGNPVPAMAHEDFFKEVIAFAKKHNIIVVH 204 (399)
T ss_pred cCCCCCCcCCHHHHHHhccccceEEEEe-CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 321 1111 1 234444432 1111335555555566788889999887763
No 246
>PRK07589 ornithine cyclodeaminase; Validated
Probab=58.24 E-value=1e+02 Score=26.98 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=62.9
Q ss_pred HHHHHhccc--CCCCEEEEecCCHHHHHHHHHHHhCCc-eEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhch
Q psy2575 41 APSQACEHI--HSNEIILTLGYSKIVELFLKNAAQHRK-FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS 117 (165)
Q Consensus 41 Ia~~a~~~I--~~~~~ILT~g~S~tV~~~L~~A~~~~~-f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~ 117 (165)
....+.+++ .+-.++..+|.+.....-+.....-++ -+|+|..-. ...-..+++++.+.|+++....+ +.....
T Consensus 116 ~sala~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~-~~~a~~~~~~~~~~~~~v~~~~~--~~~av~ 192 (346)
T PRK07589 116 TSALAAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDID-PAATAKLARNLAGPGLRIVACRS--VAEAVE 192 (346)
T ss_pred HHHHHHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHHHHhcCCcEEEeCC--HHHHHh
Confidence 334456677 345788889999766554443333222 345555322 22345788888888888887544 566778
Q ss_pred hCCEEEEcc---c--e-----eecCCCeeehhcHHH
Q psy2575 118 RVNKIIIGT---H--T-----VMANGGLRSVCGTHA 143 (165)
Q Consensus 118 ~v~~VllGA---d--~-----V~~nG~vvnk~GT~~ 143 (165)
++|.|+... + - .+..|.-++-+|++.
T Consensus 193 ~ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 193 GADIITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred cCCEEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 899888644 2 2 345788888888754
No 247
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=58.19 E-value=63 Score=26.32 Aligned_cols=92 Identities=15% Similarity=0.068 Sum_probs=52.1
Q ss_pred CCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcccee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTV 129 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V 129 (165)
+|..|+++|.++....=.....+ +.+.+|+-.|..| ++..-..+.+ +..+.+.--......+++|+...+-
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~-----el~~~~~~~~--i~~~~~~~~~~~~~~~~lviaAt~d- 82 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEP-----ELKALIEEGK--IKWIEREFDAEDLDDAFLVIAATDD- 82 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccH-----HHHHHHHhcC--cchhhcccChhhhcCceEEEEeCCC-
Confidence 47789999999766542222222 6677777555522 2322222233 2222222222233347777776543
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
..-...++.+|+.+++||.++
T Consensus 83 --------~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 83 --------EELNERIAKAARERRILVNVV 103 (210)
T ss_pred --------HHHHHHHHHHHHHhCCceecc
Confidence 233356899999999999986
No 248
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=58.10 E-value=63 Score=23.96 Aligned_cols=11 Identities=36% Similarity=0.202 Sum_probs=5.5
Q ss_pred CCEEEEecCCH
Q psy2575 52 NEIILTLGYSK 62 (165)
Q Consensus 52 ~~~ILT~g~S~ 62 (165)
-++|++-+.|+
T Consensus 30 ~eiivvdd~s~ 40 (181)
T cd04187 30 YEIIFVDDGST 40 (181)
T ss_pred eEEEEEeCCCC
Confidence 34555555443
No 249
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=58.09 E-value=51 Score=26.40 Aligned_cols=47 Identities=13% Similarity=0.001 Sum_probs=29.5
Q ss_pred HHhchhCCEEEEccceeecCCCe----------eehhcHHHHHHHHhhCCC-cEEEEe
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGL----------RSVCGTHAVALAAQHYSI-PYPCTF 159 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~v----------vnk~GT~~lAl~Ak~~~v-Pv~V~~ 159 (165)
...+..+|.|+--|-....++.. .|-.|+..+.-+|+++++ +..++.
T Consensus 52 ~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~ 109 (292)
T TIGR01777 52 SEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFIS 109 (292)
T ss_pred hhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEE
Confidence 34556788887655432222211 367789999999999987 444443
No 250
>PRK05973 replicative DNA helicase; Provisional
Probab=57.99 E-value=65 Score=26.77 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=59.0
Q ss_pred ccCCCCEEEEecC---CHHH--HHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceE-------EEc-cc-hH
Q psy2575 48 HIHSNEIILTLGY---SKIV--ELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTV-------LIP-DS-AM 112 (165)
Q Consensus 48 ~I~~~~~ILT~g~---S~tV--~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~-------~I~-ds-av 112 (165)
-+..|+.++..|. +.|. .+|+.++.+ |.+.-.+-.|..|. ++..++.+.|++.. +.. |. ..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~----~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~ 135 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQ----DVRDRLRALGADRAQFADLFEFDTSDAICA 135 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHH----HHHHHHHHcCCChHHhccceEeecCCCCCH
Confidence 4577888888754 3444 557777765 44333334455442 45666666666421 111 11 11
Q ss_pred HHhch------hCCEEEEccceeecCCCeeehhcH--HHHHHHHhhCCCcEEEEeecccC
Q psy2575 113 FGLIS------RVNKIIIGTHTVMANGGLRSVCGT--HAVALAAQHYSIPYPCTFLLNIG 164 (165)
Q Consensus 113 ~~~m~------~v~~VllGAd~V~~nG~vvnk~GT--~~lAl~Ak~~~vPv~V~~~~~~~ 164 (165)
.+.+. +.+.|++=.=..+....--...+. ..+-..||.+++|++++++.+=+
T Consensus 136 ~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 136 DYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 22222 256565533222221110011222 34667999999999999988743
No 251
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=57.99 E-value=1e+02 Score=25.05 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=43.0
Q ss_pred EEEEecCCHHHHHHHHHHHhCC-ceE-EEEecCCCCChHHHHHHHHhhcCCceEEEcc----------chHHHhchh--C
Q psy2575 54 IILTLGYSKIVELFLKNAAQHR-KFQ-CIVMENSPENKGHELAVSLAKSKIQTVLIPD----------SAMFGLISR--V 119 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~-~f~-ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d----------sav~~~m~~--v 119 (165)
.||.-|..+.++.++....++. +.+ +.|.-++|...+.+.|++ .|||+..++. ..+...+++ +
T Consensus 3 ~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~---~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (207)
T PLN02331 3 AVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARE---NGIPVLVYPKTKGEPDGLSPDELVDALRGAGV 79 (207)
T ss_pred EEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHH---hCCCEEEeccccCCCcccchHHHHHHHHhcCC
Confidence 3566677777776666555542 334 445567787777666554 6999877643 234444544 8
Q ss_pred CEEEEcc
Q psy2575 120 NKIIIGT 126 (165)
Q Consensus 120 ~~VllGA 126 (165)
|.+++..
T Consensus 80 Dliv~ag 86 (207)
T PLN02331 80 DFVLLAG 86 (207)
T ss_pred CEEEEeC
Confidence 8888743
No 252
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=57.99 E-value=46 Score=25.47 Aligned_cols=10 Identities=10% Similarity=-0.087 Sum_probs=4.5
Q ss_pred CCEEEEecCC
Q psy2575 52 NEIILTLGYS 61 (165)
Q Consensus 52 ~~~ILT~g~S 61 (165)
.++|++-+.|
T Consensus 26 ~eIivvdd~S 35 (191)
T cd06436 26 FLVLVIDDAS 35 (191)
T ss_pred eEEEEEECCC
Confidence 3444544444
No 253
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.94 E-value=73 Score=23.39 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=2.4
Q ss_pred eEEEEe
Q psy2575 77 FQCIVM 82 (165)
Q Consensus 77 f~ViV~ 82 (165)
|+|+|+
T Consensus 28 ~evivv 33 (202)
T cd06433 28 IEYIVI 33 (202)
T ss_pred ceEEEE
Confidence 334333
No 254
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=57.94 E-value=89 Score=26.32 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=36.6
Q ss_pred HHHHHhhcCCceEEEccchHH----HhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 93 LAVSLAKSKIQTVLIPDSAMF----GLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 93 la~~L~~~GI~v~~I~dsav~----~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
++.+|...|+++.+..+.... ..+.+=|.+|+- ...| ..--+..++-.||+.++|+++++..
T Consensus 65 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~i----S~sG---~t~~~~~~~~~ak~~g~~vi~iT~~ 130 (326)
T PRK10892 65 MAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAI----SNSG---ESSEILALIPVLKRLHVPLICITGR 130 (326)
T ss_pred HHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEE----eCCC---CCHHHHHHHHHHHHCCCcEEEEECC
Confidence 445555667776665443222 123344544432 2233 3345667888999999999998764
No 255
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=57.60 E-value=74 Score=25.96 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=57.5
Q ss_pred HHHhcccCCCCEEEEecCCHHHHH-HHHHHHhCCceEEEEecCCC----CChHHHHHHHHhhcC-CceEEEccchH---H
Q psy2575 43 SQACEHIHSNEIILTLGYSKIVEL-FLKNAAQHRKFQCIVMENSP----ENKGHELAVSLAKSK-IQTVLIPDSAM---F 113 (165)
Q Consensus 43 ~~a~~~I~~~~~ILT~g~S~tV~~-~L~~A~~~~~f~ViV~Es~P----~~eG~~la~~L~~~G-I~v~~I~dsav---~ 113 (165)
+.+.++.+.|-+|.+ |...-+-. ..+.|.+....+|.|+-+.- -.+-+.+.+++.+.| .=++-.+...- .
T Consensus 65 ~l~~~l~~~g~~IVS-G~A~GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p~~~~~~~~ 143 (220)
T TIGR00732 65 KLAEELAKNGVTIVS-GLALGIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYPPDTKPIKY 143 (220)
T ss_pred HHHHHHHhCCCEEEc-CchhhHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecCCCCCCCcc
Confidence 334444555555554 44433433 33334443445565654321 124567777877766 54444433221 1
Q ss_pred Hhchh-------CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 114 GLISR-------VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 114 ~~m~~-------v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.++.| ++.++ |++.| -+.||...|-.|..+++||+++
T Consensus 144 ~f~~RNriia~ls~~vi-----vve~~---~~sGtl~ta~~A~~~gr~v~~~ 187 (220)
T TIGR00732 144 NFPKRNRIISGLSRAVL-----VVEAP---LKSGALITARYALEQGREVFAY 187 (220)
T ss_pred cHHHHHHHHHHhcCEEE-----EEECC---CCCchHHHHHHHHHhCCcEEEE
Confidence 12221 23322 22333 3679999999999999999997
No 256
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=57.29 E-value=1.4e+02 Score=26.33 Aligned_cols=92 Identities=17% Similarity=0.055 Sum_probs=48.2
Q ss_pred CCEEEEecCCHHH---HH--HHHHHHh----CCceEEEEecCCCCChHHHHHHHHhhcCCc----------------eEE
Q psy2575 52 NEIILTLGYSKIV---EL--FLKNAAQ----HRKFQCIVMENSPENKGHELAVSLAKSKIQ----------------TVL 106 (165)
Q Consensus 52 ~~~ILT~g~S~tV---~~--~L~~A~~----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~----------------v~~ 106 (165)
..+|+..+.|+-- .. .+..+.+ ..++.+++.- .|...-..+.+.+.+.|++ +.+
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v 283 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAI-VPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEV 283 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEe-CCCCCHHHHHHHHHhcCceecCCccccchhhccCceEE
Confidence 3578888877611 11 2232322 2355555442 1222223455555555653 333
Q ss_pred Ecc-chHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 107 IPD-SAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 107 I~d-sav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+.. ..+..+|..+|.|+. ++||.. .=+-.+++|.+++=
T Consensus 284 ~~~~~~~~~~l~~ADlvI~-------------rSGt~T--~E~a~lg~P~Ilip 322 (396)
T TIGR03492 284 LLGRGAFAEILHWADLGIA-------------MAGTAT--EQAVGLGKPVIQLP 322 (396)
T ss_pred EechHhHHHHHHhCCEEEE-------------CcCHHH--HHHHHhCCCEEEEe
Confidence 222 246677887776554 367755 33667889988763
No 257
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=57.21 E-value=41 Score=28.84 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=21.8
Q ss_pred ccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 125 GTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 125 GAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
++|.|..|. .+....++|+.+++|++.+++.
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehh
Confidence 566666654 3445677899999999987653
No 258
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=57.20 E-value=21 Score=29.24 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=41.1
Q ss_pred CCCCEEEEecCCHHHHHHHHHHHhC-C----ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHH
Q psy2575 50 HSNEIILTLGYSKIVELFLKNAAQH-R----KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMF 113 (165)
Q Consensus 50 ~~~~~ILT~g~S~tV~~~L~~A~~~-~----~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~ 113 (165)
..+--++++..|++|+.|+..+.+. . +.+|+++ |...++.|.+.|+++.+.++....
T Consensus 173 ~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~~~~~v~~I-------G~~Ta~~l~~~G~~~~~~~~~~~~ 234 (248)
T COG1587 173 LGEVDAVVFTSSSAVRALLALAPESGIEFLERKRVASI-------GPRTAETLKELGITVDIAAEKPTL 234 (248)
T ss_pred hCCCCEEEEeCHHHHHHHHHHccccchhHhhCceEEEe-------cHHHHHHHHHcCCcceecccccch
Confidence 3445677777888999999988762 2 2566666 888999999999887655554433
No 259
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=57.20 E-value=1.3e+02 Score=27.21 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=58.4
Q ss_pred HHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCC-C-CChHHHHHHHHhhcCCceEEEcc------chHHH
Q psy2575 43 SQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENS-P-ENKGHELAVSLAKSKIQTVLIPD------SAMFG 114 (165)
Q Consensus 43 ~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~-P-~~eG~~la~~L~~~GI~v~~I~d------sav~~ 114 (165)
+..++++...+.+++-+.+..+...| .+. ...-+|++.+.. + ......+...+...|+.+..+.. ..+..
T Consensus 129 ~~lA~l~gae~alvv~sg~aAi~l~l-~~l-~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~ 206 (454)
T TIGR00474 129 GLLCELTGAEDALVVNNNAAAVLLAL-NTL-AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYED 206 (454)
T ss_pred HHHHHHhCCCcEEEECCHHHHHHHHH-HHh-CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHH
Confidence 33344554445554433333333344 333 244578887643 2 22233455567778998888742 12223
Q ss_pred hchh-CCEEEEccceeec-CCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 115 LISR-VNKIIIGTHTVMA-NGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 115 ~m~~-v~~VllGAd~V~~-nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+.. ...|++-..+.+. +| .....--..++-+||++++|++|=
T Consensus 207 aI~~~T~lv~~~h~sN~~~~G-~~~~~dl~~I~~la~~~g~~vivD 251 (454)
T TIGR00474 207 AITENTALLLKVHTSNYRIVG-FTEEVSIAELVALGREHGLPVMED 251 (454)
T ss_pred hcCcCCEEEEEEccCcccccC-CCCCCCHHHHHHHHHHcCCeEEEE
Confidence 3433 3333433332221 23 112344567899999999999984
No 260
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=57.01 E-value=15 Score=30.66 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHHHHHHh-C---CceEEEEecCCCC--ChHHHHHHHHhhcCCceEEEccc---h----HHHhchhCCEEEEcccee
Q psy2575 63 IVELFLKNAAQ-H---RKFQCIVMENSPE--NKGHELAVSLAKSKIQTVLIPDS---A----MFGLISRVNKIIIGTHTV 129 (165)
Q Consensus 63 tV~~~L~~A~~-~---~~f~ViV~Es~P~--~eG~~la~~L~~~GI~v~~I~ds---a----v~~~m~~v~~VllGAd~V 129 (165)
.+.+-|.-.++ - +++-|+...+.+. ..-..+.+...+.|+++..++-. . +..+-+++|.+++..|..
T Consensus 116 ~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~ 195 (294)
T PF04392_consen 116 PIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNL 195 (294)
T ss_dssp -HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HH
T ss_pred CHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcc
Confidence 44555555554 1 3333444334332 11223344455678877644322 1 222335689888887654
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
..+ ....+...+.++++|++...+.
T Consensus 196 ~~~-------~~~~i~~~~~~~~iPv~~~~~~ 220 (294)
T PF04392_consen 196 VDS-------NFEAILQLANEAKIPVFGSSDF 220 (294)
T ss_dssp HHH-------THHHHHHHCCCTT--EEESSHH
T ss_pred hHh-------HHHHHHHHHHhcCCCEEECCHH
Confidence 322 2223777889999999986543
No 261
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=56.85 E-value=20 Score=28.24 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecC-CCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMAN-GGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~n-G~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
..+++.|+..|++++++.+. .-+.++|.++++--.-... -....+.|-.....-+...++|++-+|-
T Consensus 13 ~~~~~~l~~~g~~v~~~~~~---~~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~ 80 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSDP---EEIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICL 80 (199)
T ss_pred HHHHHHHHHCCCcEEEEcCh---HHhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECH
Confidence 46788999999999988552 2346788887753100000 0001122333333333467899998773
No 262
>PRK08618 ornithine cyclodeaminase; Validated
Probab=56.83 E-value=1.2e+02 Score=25.87 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=60.5
Q ss_pred HHHhccc--CCCCEEEEecCCHHHHHHHHHHHhCCce-EEEEecCCCCChHHHHHHHHhh-cCCceEEEccchHHHhchh
Q psy2575 43 SQACEHI--HSNEIILTLGYSKIVELFLKNAAQHRKF-QCIVMENSPENKGHELAVSLAK-SKIQTVLIPDSAMFGLISR 118 (165)
Q Consensus 43 ~~a~~~I--~~~~~ILT~g~S~tV~~~L~~A~~~~~f-~ViV~Es~P~~eG~~la~~L~~-~GI~v~~I~dsav~~~m~~ 118 (165)
..+.+++ .+..++..+|.+......+......+.+ +|.+....| ....++++.+.+ .++++....| ....+++
T Consensus 116 ala~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~-~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 192 (325)
T PRK08618 116 GVATKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTF-EKAYAFAQEIQSKFNTEIYVVNS--ADEAIEE 192 (325)
T ss_pred HHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCH-HHHHHHHHHHHHhcCCcEEEeCC--HHHHHhc
Confidence 4445666 3567899999997776665544332333 355554333 446678888865 4777665544 3445588
Q ss_pred CCEEEEccc-------eeecCCCeeehhcHH
Q psy2575 119 VNKIIIGTH-------TVMANGGLRSVCGTH 142 (165)
Q Consensus 119 v~~VllGAd-------~V~~nG~vvnk~GT~ 142 (165)
+|.|+...- ..+..|..++-+|++
T Consensus 193 aDiVi~aT~s~~p~i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 193 ADIIVTVTNAKTPVFSEKLKKGVHINAVGSF 223 (325)
T ss_pred CCEEEEccCCCCcchHHhcCCCcEEEecCCC
Confidence 998886321 334678888888875
No 263
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=56.66 E-value=38 Score=32.56 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHh-CCceEEEEecCCCCCh--HHHHHHHHhhcCCceEEEc
Q psy2575 60 YSKIVELFLKNAAQ-HRKFQCIVMENSPENK--GHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 60 ~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~e--G~~la~~L~~~GI~v~~I~ 108 (165)
.|+. .+.|..|++ |++.+|+|-=-.=..| ....++.|.++|+.|.|-.
T Consensus 370 ~s~i-i~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viyg~ 420 (672)
T TIGR03705 370 DSPI-IDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVYGV 420 (672)
T ss_pred CcHH-HHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEEcC
Confidence 4544 455555555 7777777641111122 3455889999999888743
No 264
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=56.64 E-value=53 Score=25.38 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCceEEEccch-HHHh-chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 90 GHELAVSLAKSKIQTVLIPDSA-MFGL-ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 90 G~~la~~L~~~GI~v~~I~dsa-v~~~-m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+..+++.|++.|..+++++... .... ..+.|.++++-- .|+.........+..-+...++|++-+|
T Consensus 9 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG----~~~~~~~~~~~~~~~~~~~~~~PvlGIC 76 (178)
T cd01744 9 KHNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNG----PGDPALLDEAIKTVRKLLGKKIPIFGIC 76 (178)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCC----CCChhHhHHHHHHHHHHHhCCCCEEEEC
Confidence 3568999999999988887432 2221 234666555421 1111111222334444556789999777
No 265
>PRK06207 aspartate aminotransferase; Provisional
Probab=56.62 E-value=1.3e+02 Score=26.08 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHhcc----cCC-CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc
Q psy2575 34 ANPTSDTAPSQACEH----IHS-NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~----I~~-~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ 108 (165)
....++.|+++..++ +.. .++++|-|.+..+..++.... +..-+|++. .|.+.+.. ..+...|.++..++
T Consensus 80 ~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~-~~Gd~Vlv~--~P~y~~~~--~~~~~~g~~v~~v~ 154 (405)
T PRK06207 80 DADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV-ARGDKVAIV--QPDYFANR--KLVEFFEGEMVPVQ 154 (405)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-CCCCEEEEe--CCCchhHH--HHHHHcCCEEEEEe
Confidence 456788998877654 333 568888777766554444332 344566664 36665433 33445566655443
Q ss_pred cc-------------hHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 109 DS-------------AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 109 ds-------------av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.. .+...+. +...+++-.= =-+.|.++..-=-..++-.|+++++++++
T Consensus 155 ~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P-~NPTG~~~s~e~l~~l~~~a~~~~~~iI~ 216 (405)
T PRK06207 155 LDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNP-NNPAGVVYSAEEIAQIAALARRYGATVIV 216 (405)
T ss_pred ccccCcccCCCcCHHHHHHhhhhcCeEEEECCC-CCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 21 1222222 3333433211 13334444443344577788888887764
No 266
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=56.57 E-value=34 Score=24.09 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=37.5
Q ss_pred HHHHHhhcCCceEEEcc--chHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 93 LAVSLAKSKIQTVLIPD--SAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 93 la~~L~~~GI~v~~I~d--sav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
+-+.+.+.|+++++..- +.+...+.++|.++++.+.-+.- -.+--.+...++||.++-+..
T Consensus 19 i~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~---------~~i~~~~~~~~~pv~~I~~~~ 81 (96)
T cd05564 19 MKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYML---------DEVKKKAAEYGIPVAVIDMMD 81 (96)
T ss_pred HHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHH---------HHHHHHhccCCCcEEEcChHh
Confidence 34555667876555544 34444778899999998764321 112233456789998875543
No 267
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=56.51 E-value=77 Score=23.25 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=39.6
Q ss_pred HHHHHHhhc--CCceEEEccc----hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 92 ELAVSLAKS--KIQTVLIPDS----AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 92 ~la~~L~~~--GI~v~~I~ds----av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
.+++.|++. +++++..+.. .....+++.|.|+.+.|. ..-...+.-.|+.+++|++.+.-
T Consensus 57 ~~~~~l~~~~p~v~i~~~~~~~~~~~~~~~~~~~diVi~~~d~---------~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 57 VAARRLNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDN---------IAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred HHHHHHHHHCCCcEEEEEeeecChhhHHHHhcCCCEEEECCCC---------HHHHHHHHHHHHHcCCCEEEEcC
Confidence 345566654 3566555433 223567788988888765 23367788899999999997643
No 268
>PRK14361 Maf-like protein; Provisional
Probab=56.50 E-value=98 Score=24.73 Aligned_cols=88 Identities=23% Similarity=0.171 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHhCCceEEEEe---cCCCCChHHHHHHHHhhcCCceEEEccchHHHhch-hCCEEEEcccee-ecCC
Q psy2575 59 GYSKIVELFLKNAAQHRKFQCIVM---ENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS-RVNKIIIGTHTV-MANG 133 (165)
Q Consensus 59 g~S~tV~~~L~~A~~~~~f~ViV~---Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~-~v~~VllGAd~V-~~nG 133 (165)
|.|+.=.++|..+ |-+|.++.. |+.+...-.+++.+|+...-. .+.+ .-+.+++|||.| .-||
T Consensus 5 S~SprR~elL~~~--g~~f~v~~~~~dE~~~~~~p~~~v~~lA~~Ka~----------~v~~~~~~~~vI~aDTvV~~~g 72 (187)
T PRK14361 5 SGSPRRRELLENL--GVPFQVVVSGEAEDSTETDPARLAAELALLKAR----------AVARLHPDAVVIAADTVVALGG 72 (187)
T ss_pred cCCHHHHHHHHHC--CCCcEEECCCCCCCCCCCCHHHHHHHHHHHHHH----------HHHHhCCCCEEEEeCeEEEECC
Confidence 4454434455543 677887743 443332234667777665411 1111 136799999995 4799
Q ss_pred CeeehhcHHHHH--HHHhhCCCcEEEE
Q psy2575 134 GLRSVCGTHAVA--LAAQHYSIPYPCT 158 (165)
Q Consensus 134 ~vvnk~GT~~lA--l~Ak~~~vPv~V~ 158 (165)
.++.|-.+..=| ++-...+.+.-|.
T Consensus 73 ~ilgKP~~~eeA~~~L~~lsG~~h~V~ 99 (187)
T PRK14361 73 VLLAKPADEAENEAFLRVLSGRTHQVY 99 (187)
T ss_pred EEecCCCCHHHHHHHHHHhCCCceEEE
Confidence 999999988765 4555556655554
No 269
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.47 E-value=1.4e+02 Score=26.34 Aligned_cols=88 Identities=7% Similarity=0.049 Sum_probs=51.6
Q ss_pred CEEEEecCCHHHHHHHHHHHhCC-ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeec
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHR-KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMA 131 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~-~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~ 131 (165)
..|+.+|...+=...+....+.. .++|.+.|.++.. .....|.+ |+++..-... ...+.++|.|++++ +|-+
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~---~~~~~l~~-g~~~~~g~~~--~~~~~~~d~vV~Sp-gI~~ 80 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETP---PGQEQLPE-DVELHSGGWN--LEWLLEADLVVTNP-GIAL 80 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCc---hhHHHhhc-CCEEEeCCCC--hHHhccCCEEEECC-CCCC
Confidence 45677765544444444343323 3889999988753 23345655 8777654211 12246789888776 3322
Q ss_pred CCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 132 NGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 132 nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
+.+....|++.++|++
T Consensus 81 ---------~~p~~~~a~~~gi~i~ 96 (438)
T PRK04663 81 ---------ATPEIQQVLAAGIPVV 96 (438)
T ss_pred ---------CCHHHHHHHHCCCcEE
Confidence 2366677778888876
No 270
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=56.35 E-value=83 Score=25.91 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=16.6
Q ss_pred hhcHHHHHHHHhhCCCcEEEEe
Q psy2575 138 VCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 138 k~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
-.-+.+++.+|+++++|+.+++
T Consensus 188 eME~aa~a~lA~~~gv~~~~i~ 209 (248)
T TIGR01697 188 GMSTVPEVIVARHCGIKVLAVS 209 (248)
T ss_pred ccChHHHHHHHHHCCCcEEEEE
Confidence 3445778888888888888764
No 271
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=56.26 E-value=46 Score=28.50 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=42.6
Q ss_pred EEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhch--hCCEEEEcccee
Q psy2575 54 IILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS--RVNKIIIGTHTV 129 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~--~v~~VllGAd~V 129 (165)
.|+..|.+..-..+...|++ ..++|++++..|...+..++.. -+...+....++..+.+ ++|.|+.+.+.+
T Consensus 1 kililG~g~~~~~l~~aa~~-~G~~v~~~d~~~~~~~~~~ad~----~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v 73 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQR-LGVEVIAVDRYANAPAMQVAHR----SYVINMLDGDALRAVIEREKPDYIVPEIEAI 73 (380)
T ss_pred CEEEECCCHHHHHHHHHHHH-cCCEEEEEeCCCCCchhhhCce----EEEcCCCCHHHHHHHHHHhCCCEEEeccCcc
Confidence 37888988766666665554 6789999999887766655431 11111111123444444 488887776554
No 272
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=56.18 E-value=37 Score=28.28 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=39.6
Q ss_pred ChHHHHHHHHhhcCCceEEEccch-HHHh---chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 88 NKGHELAVSLAKSKIQTVLIPDSA-MFGL---ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 88 ~eG~~la~~L~~~GI~v~~I~dsa-v~~~---m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..|+.+++.|.+.|.++.++.... .... +.+.|.||.-++..+.. -|. +.-++..+++|+.-
T Consensus 19 ~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge------~~~--~~~~le~~gip~~G 84 (299)
T PRK14571 19 RSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGE------DGT--LQAILDFLGIRYTG 84 (299)
T ss_pred HHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCC------ccH--HHHHHHHcCCCccC
Confidence 357788888999998888886332 2111 34689999888765421 122 34566677888764
No 273
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=55.90 E-value=89 Score=27.71 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=41.6
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCc
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIP 154 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vP 154 (165)
+..+|.+.|..+.. ....|.+.|+++..- .. ...+.++|.|++++ +|-+ ..+.-..|++.++|
T Consensus 22 ~G~~v~~~D~~~~~----~~~~l~~~gi~~~~g-~~--~~~~~~~d~vV~sp-gi~~---------~~p~~~~a~~~~i~ 84 (448)
T TIGR01082 22 RGYQVSGSDIAENA----TTKRLEALGIPIYIG-HS--AENLDDADVVVVSA-AIKD---------DNPEIVEAKERGIP 84 (448)
T ss_pred CCCeEEEECCCcch----HHHHHHHCcCEEeCC-CC--HHHCCCCCEEEECC-CCCC---------CCHHHHHHHHcCCc
Confidence 66889999977653 456688889877543 22 22346788888775 2222 23555667777777
Q ss_pred EE
Q psy2575 155 YP 156 (165)
Q Consensus 155 v~ 156 (165)
++
T Consensus 85 v~ 86 (448)
T TIGR01082 85 VI 86 (448)
T ss_pred eE
Confidence 76
No 274
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=55.86 E-value=1.3e+02 Score=25.82 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH-H-HHHHHhhcCCceEEEccch---
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH-E-LAVSLAKSKIQTVLIPDSA--- 111 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~-~-la~~L~~~GI~v~~I~dsa--- 111 (165)
..+...+..+++..-...+++-|.+..+..+ ....+ ..-+|++.+ |.+.+. . +...+...|+++..++..-
T Consensus 53 t~~~le~~la~l~g~~~~~~~~sG~~ai~~~-~~ll~-~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~ 128 (366)
T PRK08247 53 TRGVLEQAIADLEGGDQGFACSSGMAAIQLV-MSLFR-SGDELIVSS--DLYGGTYRLFEEHWKKWNVRFVYVNTASLKA 128 (366)
T ss_pred hHHHHHHHHHHHhCCCcEEEEcCHHHHHHHH-HHHhC-CCCEEEEec--CCcCcHHHHHHHHhhccCceEEEECCCCHHH
Confidence 3445555555555444456655555444433 33333 334666654 544442 2 3455677899999887432
Q ss_pred HHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 112 MFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 112 v~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+...+ ++...|++- .++.=.....--..++-+|+++++++++
T Consensus 129 l~~~i~~~tklv~le----~P~NP~~~~~dl~~I~~la~~~g~~lIv 171 (366)
T PRK08247 129 IEQAITPNTKAIFIE----TPTNPLMQETDIAAIAKIAKKHGLLLIV 171 (366)
T ss_pred HHHhcccCceEEEEE----CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 33333 233344431 1221122223345578889999988876
No 275
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=55.86 E-value=1.4e+02 Score=26.06 Aligned_cols=113 Identities=10% Similarity=0.010 Sum_probs=57.8
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHHHHHH-hhcCCceEEEcc---chH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HELAVSL-AKSKIQTVLIPD---SAM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~la~~L-~~~GI~v~~I~d---sav 112 (165)
.+...+..+++.....+++|-|.+..+..++....+ +.-+|++. .|.+.+ ..+...+ ...|+++.+... ..+
T Consensus 53 ~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~-~GD~Vl~~--~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l 129 (382)
T TIGR02080 53 RDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLG-PDDLLVAP--HDCYGGTYRLLNALAKKGCFRVLFVDQGDEQAL 129 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC-CCCEEEEc--CCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHH
Confidence 334444444444444555555555454444443332 33455553 466654 4454454 445688887642 223
Q ss_pred HHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+. +...|++. .---+.|.+.. -..++-+|+++++++++
T Consensus 130 ~~ai~~~tklV~l~-~p~NPtG~~~d---l~~I~~la~~~g~~vvv 171 (382)
T TIGR02080 130 RAALAQKPKLVLIE-TPSNPLLRVVD---IAKICHLAKAVGAVVVV 171 (382)
T ss_pred HHhcCcCceEEEEE-CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 33342 33344432 22234455543 24688888999988775
No 276
>PLN02512 acetylglutamate kinase
Probab=55.75 E-value=1.3e+02 Score=25.68 Aligned_cols=106 Identities=13% Similarity=0.085 Sum_probs=63.6
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCc----eEEEEecCCC-------CChHHHHHHHHhhcCCceEEEccch----------
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRK----FQCIVMENSP-------ENKGHELAVSLAKSKIQTVLIPDSA---------- 111 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~----f~ViV~Es~P-------~~eG~~la~~L~~~GI~v~~I~dsa---------- 111 (165)
..|++||.++.+...+....-..+ +++.=.+..+ ..-..+++..|++.|++..-++-..
T Consensus 81 ~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~~ 160 (309)
T PLN02512 81 RPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGGTAVGLSGKDGRLLRARPSP 160 (309)
T ss_pred CEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCCCeEEeehhhCCEEEEEEcC
Confidence 689999999887776664422222 2221111100 1123457889999999887775321
Q ss_pred ------------------HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 112 ------------------MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 112 ------------------v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+..++..=...++...++.++|...+--+=...+.+|+..+..-+++
T Consensus 161 ~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~ 225 (309)
T PLN02512 161 NSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLIL 225 (309)
T ss_pred cCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEE
Confidence 22233343466777777778888887655566668888888654443
No 277
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=55.50 E-value=1.2e+02 Score=25.17 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=47.0
Q ss_pred CEEEEecCCHH---HHHHHHHHHh-CCc--eEEEEecCCCCChHHHHHHHHhhcCCceEEEcc-chHHHhchhCCEEEEc
Q psy2575 53 EIILTLGYSKI---VELFLKNAAQ-HRK--FQCIVMENSPENKGHELAVSLAKSKIQTVLIPD-SAMFGLISRVNKIIIG 125 (165)
Q Consensus 53 ~~ILT~g~S~t---V~~~L~~A~~-~~~--f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d-sav~~~m~~v~~VllG 125 (165)
.+++|+|.|.. ...++....+ .+. +.|++-.+.|.. .++-+.....+ ++.+... ..+..+|..+|.+|..
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~--~~l~~~~~~~~-~i~~~~~~~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNL--DELKKFAKEYP-NIILFIDVENMAELMNEADLAIGA 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCH--HHHHHHHHhCC-CEEEEeCHHHHHHHHHHCCEEEEC
Confidence 45666775532 2344444333 233 444443444543 23322222222 4555554 3578899999998874
Q ss_pred cceeecCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 126 THTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 126 Ad~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
.|+ ...=+-..++|++++..
T Consensus 249 -------------~G~--T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 249 -------------AGS--TSWERCCLGLPSLAICL 268 (279)
T ss_pred -------------Cch--HHHHHHHcCCCEEEEEe
Confidence 232 12334456899998754
No 278
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=55.49 E-value=72 Score=30.44 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=43.6
Q ss_pred hHHHHHHHHhhcCCceEEEc-------cch-HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhh-CCCcEEEEe
Q psy2575 89 KGHELAVSLAKSKIQTVLIP-------DSA-MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQH-YSIPYPCTF 159 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~-------dsa-v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~-~~vPv~V~~ 159 (165)
++...|++|.+.||+||++. |-. +-.+.++-+.++. +++|.+..-.|+.-+-.++++ ..+||..++
T Consensus 515 ~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~vt-----lEe~~~~GG~Gs~v~efl~~~~~~~~v~~lg 589 (627)
T COG1154 515 EALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVT-----LEENVVDGGFGSAVLEFLAAHGILVPVLNLG 589 (627)
T ss_pred HHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeEEE-----EecCcccccHHHHHHHHHHhcCCCCceEEec
Confidence 44456777888888887764 333 3333344555543 667778888999888877766 458888765
No 279
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=55.49 E-value=32 Score=24.47 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=29.3
Q ss_pred cCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 83 ENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 83 Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
.++...+-.+.++.+++.|+++..|++..-..+-+.+|.++.-.
T Consensus 56 ~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 56 NSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence 33333444556777777788888888776666666788777654
No 280
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=55.46 E-value=1.1e+02 Score=26.50 Aligned_cols=89 Identities=18% Similarity=0.072 Sum_probs=62.0
Q ss_pred CCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhC-CEEEEcccee
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRV-NKIIIGTHTV 129 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v-~~VllGAd~V 129 (165)
-+.-+.|=...-+......|.. +.+.-|+++|.=|...=.++.+++++.| +.+|-.+.-..+.+.. -.-++. .-+
T Consensus 66 a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~kiGimp-~~i 142 (293)
T COG0074 66 ANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGECKIGIMP-GNI 142 (293)
T ss_pred CCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcceeeech-hhh
Confidence 4444445444446665555665 6788899999999998888899999988 7778777778777774 333332 455
Q ss_pred ecCC--CeeehhcHHH
Q psy2575 130 MANG--GLRSVCGTHA 143 (165)
Q Consensus 130 ~~nG--~vvnk~GT~~ 143 (165)
+..| ++++++||+.
T Consensus 143 ~~~G~IGiVSrSGTLT 158 (293)
T COG0074 143 YKPGNIGIVSRSGTLT 158 (293)
T ss_pred ccCCceEEEecCcchH
Confidence 5556 4688888753
No 281
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=55.42 E-value=1.3e+02 Score=25.58 Aligned_cols=79 Identities=9% Similarity=0.021 Sum_probs=41.3
Q ss_pred CCceEEEEecCCCCChHH--HHHHHHhhcCCceEEEccc---------hHHHhchhCCEEEEccceeecCCCeeehhcHH
Q psy2575 74 HRKFQCIVMENSPENKGH--ELAVSLAKSKIQTVLIPDS---------AMFGLISRVNKIIIGTHTVMANGGLRSVCGTH 142 (165)
Q Consensus 74 ~~~f~ViV~Es~P~~eG~--~la~~L~~~GI~v~~I~ds---------av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~ 142 (165)
++.-+|++.+ |.+.+. .+....+..|+++.+++.. .+...+..-+++++-...-...|.+. . --
T Consensus 102 ~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~-~--~~ 176 (397)
T TIGR01976 102 GPGDEVIVTR--LDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIV-D--LA 176 (397)
T ss_pred CCCCEEEEcC--CchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccC-C--HH
Confidence 3445777764 333222 2223345678888877532 12223332233333333334455443 2 34
Q ss_pred HHHHHHhhCCCcEEE
Q psy2575 143 AVALAAQHYSIPYPC 157 (165)
Q Consensus 143 ~lAl~Ak~~~vPv~V 157 (165)
.|+-+|+++++++++
T Consensus 177 ~i~~~~~~~~~~~iv 191 (397)
T TIGR01976 177 AITELVHAAGALVVV 191 (397)
T ss_pred HHHHHHHHcCCEEEE
Confidence 677889999988876
No 282
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=55.25 E-value=17 Score=26.30 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=16.9
Q ss_pred ccCCCCEEEEecCCHHHHHHHHHH
Q psy2575 48 HIHSNEIILTLGYSKIVELFLKNA 71 (165)
Q Consensus 48 ~I~~~~~ILT~g~S~tV~~~L~~A 71 (165)
.+++|.-|..++|++++...+..+
T Consensus 5 ~~~~g~di~iia~G~~~~~al~A~ 28 (124)
T PF02780_consen 5 VLREGADITIIAYGSMVEEALEAA 28 (124)
T ss_dssp EEESSSSEEEEEETTHHHHHHHHH
T ss_pred EEeCCCCEEEEeehHHHHHHHHHH
Confidence 456777777777777777776644
No 283
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=55.23 E-value=56 Score=27.03 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=26.6
Q ss_pred hHHHHHHHHhhcCCceEEEccc-hHHHhc--hhCCEEEEccc
Q psy2575 89 KGHELAVSLAKSKIQTVLIPDS-AMFGLI--SRVNKIIIGTH 127 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~ds-av~~~m--~~v~~VllGAd 127 (165)
.+..+.+.|++.|+++.++... .....+ .++|.|+...+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~ 65 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALH 65 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecC
Confidence 5688899999999999888533 222222 35788887644
No 284
>PRK15005 universal stress protein F; Provisional
Probab=55.22 E-value=55 Score=23.48 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=24.6
Q ss_pred hCCEEEEccceeecCCCeee-hhcHHHHHHHHhhCCCcEEEE
Q psy2575 118 RVNKIIIGTHTVMANGGLRS-VCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 118 ~v~~VllGAd~V~~nG~vvn-k~GT~~lAl~Ak~~~vPv~V~ 158 (165)
++|.+++|++. .| +.. -.|+. ..-+.++.++||+|+
T Consensus 107 ~~DLIV~Gs~~---~~-~~~~llGS~-a~~vl~~a~cpVlvV 143 (144)
T PRK15005 107 PADMIIIASHR---PD-ITTYLLGSN-AAAVVRHAECSVLVV 143 (144)
T ss_pred CCCEEEEeCCC---CC-chheeecch-HHHHHHhCCCCEEEe
Confidence 59999999873 22 322 23653 445678888999986
No 285
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=55.17 E-value=1.4e+02 Score=26.01 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=57.5
Q ss_pred HHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHHHH-HHhhcCCceEEEcc---chHHH
Q psy2575 40 TAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HELAV-SLAKSKIQTVLIPD---SAMFG 114 (165)
Q Consensus 40 ~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~la~-~L~~~GI~v~~I~d---sav~~ 114 (165)
...+.-+++....+.++|-|.+..+...+.... ++.-+|++. .|.+.+ ..++. .+...|+++..+.. ..+..
T Consensus 54 ~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all-~~GD~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~ 130 (377)
T TIGR01324 54 ALQDAMCELEGGAGCYLYPSGLAAVTNSILAFV-KAGDHVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIAT 130 (377)
T ss_pred HHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhc-CCCCEEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHH
Confidence 333333444444456666555555555554433 334467665 344433 44553 46678999887742 34544
Q ss_pred hchh-CCEEEEccceeecCCCeeehhcH----HHHHHHHhhCCCcEEE
Q psy2575 115 LISR-VNKIIIGTHTVMANGGLRSVCGT----HAVALAAQHYSIPYPC 157 (165)
Q Consensus 115 ~m~~-v~~VllGAd~V~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 157 (165)
.+.. ...|++- ...|..|. -.++-+|++++++++|
T Consensus 131 ~i~~~tklV~le--------sp~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 131 LIQPNTKVLFLE--------APSSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred hcCCCceEEEEE--------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 5543 3333321 22233343 3477889999998887
No 286
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=55.11 E-value=33 Score=27.03 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=41.0
Q ss_pred eEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeeh-------hcHHHHHHHHh
Q psy2575 77 FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSV-------CGTHAVALAAQ 149 (165)
Q Consensus 77 f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk-------~GT~~lAl~Ak 149 (165)
..|++..+.+. ...+.|...|.++.++++. .-+.++|.++++- +--.. ..-..+...+.
T Consensus 4 ~~i~~~~g~~~----~~~~~l~~~g~~~~~~~~~---~~l~~~dgiii~G-------G~~~~~~~~~~~~~~~~~i~~~~ 69 (189)
T PRK13525 4 IGVLALQGAVR----EHLAALEALGAEAVEVRRP---EDLDEIDGLILPG-------GESTTMGKLLRDFGLLEPLREFI 69 (189)
T ss_pred EEEEEcccCHH----HHHHHHHHCCCEEEEeCCh---hHhccCCEEEECC-------CChHHHHHHHHhccHHHHHHHHH
Confidence 45555554433 3457788899999999873 3356677777663 32111 11112233445
Q ss_pred hCCCcEEEEee
Q psy2575 150 HYSIPYPCTFL 160 (165)
Q Consensus 150 ~~~vPv~V~~~ 160 (165)
+.++|++-+|-
T Consensus 70 ~~g~PilGIC~ 80 (189)
T PRK13525 70 ASGLPVFGTCA 80 (189)
T ss_pred HCCCeEEEECH
Confidence 56899998773
No 287
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=55.02 E-value=46 Score=29.51 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=43.7
Q ss_pred CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCC
Q psy2575 74 HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSI 153 (165)
Q Consensus 74 ~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~v 153 (165)
.+.++|++.|..|..+ ....|++.|+.+..-.+. ..+...+|.|++++ +|-++ .+.-..|++.++
T Consensus 21 ~~G~~V~~~D~~~~~~---~~~~l~~~gi~~~~~~~~--~~~~~~~d~vV~Sp-gI~~~---------~~~~~~a~~~~i 85 (448)
T TIGR01081 21 QLGHEVTGSDANVYPP---MSTQLEAQGIEIIEGFDA--AQLEPKPDLVVIGN-AMKRG---------NPCVEAVLNLNL 85 (448)
T ss_pred hCCCEEEEECCCCCcH---HHHHHHHCCCEEeCCCCH--HHCCCCCCEEEECC-CCCCC---------CHHHHHHHHCCC
Confidence 3668999999887532 333588889887654433 33445688887765 33222 355666777777
Q ss_pred cEE
Q psy2575 154 PYP 156 (165)
Q Consensus 154 Pv~ 156 (165)
|++
T Consensus 86 ~v~ 88 (448)
T TIGR01081 86 PYT 88 (448)
T ss_pred CEE
Confidence 776
No 288
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.96 E-value=1.5e+02 Score=26.13 Aligned_cols=89 Identities=8% Similarity=-0.031 Sum_probs=51.0
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh--cCCceEEEccchHHHhchhCCEEEEcccee
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK--SKIQTVLIPDSAMFGLISRVNKIIIGTHTV 129 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~--~GI~v~~I~dsav~~~m~~v~~VllGAd~V 129 (165)
+.+|+.+|.+.+=...-... ..+..+|.+.|..+..+ ...+|.+ .|+.+..-... ......+|.|++++- |
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~---~~~~l~~~~~gi~~~~g~~~--~~~~~~~d~vv~spg-i 77 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPE---RVAQIGKMFDGLVFYTGRLK--DALDNGFDILALSPG-I 77 (445)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCch---hHHHHhhccCCcEEEeCCCC--HHHHhCCCEEEECCC-C
Confidence 56788888775444432222 24567888888777643 2234655 47766543322 223467888888762 2
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
-+ +.+.-..|++.++|++
T Consensus 78 ~~---------~~p~~~~a~~~~i~v~ 95 (445)
T PRK04308 78 SE---------RQPDIEAFKQNGGRVL 95 (445)
T ss_pred CC---------CCHHHHHHHHcCCcEE
Confidence 22 2355566666666665
No 289
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=54.85 E-value=1.2e+02 Score=24.96 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=48.0
Q ss_pred CCEEEEecCCHHHHH---HHHHHHh---CCceEEE-EecCCCCChHHHHHHHHhhcCCc-eEEEccchHHHhchhCCEEE
Q psy2575 52 NEIILTLGYSKIVEL---FLKNAAQ---HRKFQCI-VMENSPENKGHELAVSLAKSKIQ-TVLIPDSAMFGLISRVNKII 123 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~---~L~~A~~---~~~f~Vi-V~Es~P~~eG~~la~~L~~~GI~-v~~I~dsav~~~m~~v~~Vl 123 (165)
..+|+.+|.+.-... .+..+.+ .+..+++ +....+. ..+-+.+.+.++. ........+..+|+.+|.++
T Consensus 179 ~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~---~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v 255 (348)
T TIGR01133 179 KPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKNDL---EKVKNVYQELGIEAIVTFIDENMAAAYAAADLVI 255 (348)
T ss_pred CeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcchH---HHHHHHHhhCCceEEecCcccCHHHHHHhCCEEE
Confidence 346777776654322 3333433 2233443 3322221 3444455556653 32223336788999999888
Q ss_pred EccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 124 IGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 124 lGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.- .|+ ...+=|-..++|+++.
T Consensus 256 ~~-------------~g~-~~l~Ea~~~g~Pvv~~ 276 (348)
T TIGR01133 256 SR-------------AGA-STVAELAAAGVPAILI 276 (348)
T ss_pred EC-------------CCh-hHHHHHHHcCCCEEEe
Confidence 52 231 2344667789999885
No 290
>PRK12939 short chain dehydrogenase; Provisional
Probab=54.80 E-value=68 Score=25.01 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=28.3
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEE
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVL 106 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~ 106 (165)
+.+++..|.++-+=.-|......+..+|+++..+| .....+...+.+.+-++..
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA-AEARELAAALEAAGGRAHA 60 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHHHHHhcCCcEEE
Confidence 56777777665553333322222445677774333 3334556666665544443
No 291
>PRK09134 short chain dehydrogenase; Provisional
Probab=54.50 E-value=77 Score=25.17 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=30.9
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEE
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLI 107 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I 107 (165)
.+.++|+.|-|+-+=.-+......+..+|+++..+.......+...+...|-++..+
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVAL 64 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 456788888776553333322222445777665544333445666666555555433
No 292
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=54.45 E-value=72 Score=30.02 Aligned_cols=92 Identities=8% Similarity=0.120 Sum_probs=57.3
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc-----hhCCEEEEcc
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI-----SRVNKIIIGT 126 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m-----~~v~~VllGA 126 (165)
.+.|+..||++.=+.+-+...+ +.++++++|..|. .++.+++.|.++.+-. ..=..++ .+++.+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~-----~v~~~~~~g~~v~~GD-at~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPD-----HIETLRKFGMKVFYGD-ATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHH-----HHHHHHhcCCeEEEEe-CCCHHHHHhcCCCcCCEEEEEe
Confidence 3678888998765554443333 4567888888875 5677788899886654 3333344 3567666654
Q ss_pred ceeecCCCeeehhcHHHHHHHHhhCC--CcEEEEe
Q psy2575 127 HTVMANGGLRSVCGTHAVALAAQHYS--IPYPCTF 159 (165)
Q Consensus 127 d~V~~nG~vvnk~GT~~lAl~Ak~~~--vPv~V~~ 159 (165)
|- .--...++..||++. +|+++-+
T Consensus 473 ~d---------~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 473 DD---------PQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred CC---------HHHHHHHHHHHHHhCCCCeEEEEE
Confidence 33 233456778888764 4555433
No 293
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=54.40 E-value=39 Score=25.55 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=13.5
Q ss_pred EEEecCCHHHHHHHHHHHh--CCceEEEEecCCC
Q psy2575 55 ILTLGYSKIVELFLKNAAQ--HRKFQCIVMENSP 86 (165)
Q Consensus 55 ILT~g~S~tV~~~L~~A~~--~~~f~ViV~Es~P 86 (165)
|.||.....+...|.+..+ ...++|+|++..+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s 36 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNAS 36 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCC
Confidence 3344444444444444433 1234444444333
No 294
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=54.39 E-value=1.2e+02 Score=24.96 Aligned_cols=93 Identities=16% Similarity=0.003 Sum_probs=57.3
Q ss_pred CCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcccee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTV 129 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V 129 (165)
.+..||++|.+....+=+....+ +.+++|+-.+-.|..+ .|.+.| .++++.-.--...+..++.|+...|
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~------~l~~~~-~i~~~~r~~~~~dl~g~~LViaATd-- 94 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL------DLKKYG-NLKLIKGNYDKEFIKDKHLIVIATD-- 94 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH------HHHhCC-CEEEEeCCCChHHhCCCcEEEECCC--
Confidence 46799999999877654444444 6677777555443322 233333 2444443323334566777777754
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
++.=...++..|++.++||.++.
T Consensus 95 -------D~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 95 -------DEKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred -------CHHHHHHHHHHHHHcCCeEEEcC
Confidence 23334568889999999999874
No 295
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=54.37 E-value=44 Score=21.69 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=27.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc
Q psy2575 76 KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI 116 (165)
Q Consensus 76 ~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m 116 (165)
-.++++.+......-..+.+.+.+.|+++..+++..+..+-
T Consensus 18 i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls 58 (76)
T PF08032_consen 18 IKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLS 58 (76)
T ss_dssp EEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCT
T ss_pred ccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHc
Confidence 45688888844444567888888999999999987765554
No 296
>PRK06767 methionine gamma-lyase; Provisional
Probab=54.20 E-value=1.5e+02 Score=25.81 Aligned_cols=113 Identities=9% Similarity=-0.096 Sum_probs=57.4
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HHHHHH-HhhcCCceEEEccc---hH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HELAVS-LAKSKIQTVLIPDS---AM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~la~~-L~~~GI~v~~I~ds---av 112 (165)
.+...+..+++....+.|++-+.+..+...|.... ++.-+|++.. |.+.+ ..+.+. +...|+++..+... .+
T Consensus 63 ~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~-~~Gd~Vv~~~--~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l 139 (386)
T PRK06767 63 VKLFEERMAVLEGGEEALAFGSGMAAISATLIGFL-KAGDHIICSN--GLYGCTYGFLEVLEEKFMITHSFCDMETEADI 139 (386)
T ss_pred hHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcC--CcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHH
Confidence 44455555555555556665544444444443332 3445666653 43322 223333 34578888776422 23
Q ss_pred HHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+. +...|++. .---+.|.+.. -..++-+|+++++++++
T Consensus 140 ~~~i~~~tklV~le-sp~NptG~v~d---l~~I~~la~~~g~~viv 181 (386)
T PRK06767 140 ENKIRPNTKLIFVE-TPINPTMKLID---LKQVIRVAKRNGLLVIV 181 (386)
T ss_pred HHhhCcCceEEEEe-CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 33332 34444432 22223444443 25688889999998886
No 297
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=53.99 E-value=1.2e+02 Score=24.91 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHh-----CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeec
Q psy2575 61 SKIVELFLKNAAQ-----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMA 131 (165)
Q Consensus 61 S~tV~~~L~~A~~-----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~ 131 (165)
+.+.+..+..|++ +.++-|=|.=+ .+|.+.++.|++.||+|....--++...+--+. .||+-|.+
T Consensus 63 ~~~~~~mi~eA~~l~~~~~~nv~VKIP~T---~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~Aa~---aGa~yvsP 132 (222)
T PRK12656 63 AQDYEGILKDAHEIRRQCGDDVYIKVPVT---PAGLAAIKTLKAEGYHITATAIYTVFQGLLAIE---AGADYLAP 132 (222)
T ss_pred ECCHHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHCCCceEEeeeCCHHHHHHHHH---CCCCEEec
Confidence 4457777777766 33333323322 369999999999999888666444443322111 46666655
No 298
>PRK14364 Maf-like protein; Provisional
Probab=53.67 E-value=1.1e+02 Score=24.25 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHhCCceEEEEe---cCCCCCh-HHHHHHHHhhcCCceEEEccchHHHhchh-CCEEEEccce-eecCC
Q psy2575 60 YSKIVELFLKNAAQHRKFQCIVM---ENSPENK-GHELAVSLAKSKIQTVLIPDSAMFGLISR-VNKIIIGTHT-VMANG 133 (165)
Q Consensus 60 ~S~tV~~~L~~A~~~~~f~ViV~---Es~P~~e-G~~la~~L~~~GI~v~~I~dsav~~~m~~-v~~VllGAd~-V~~nG 133 (165)
.|+.=.++|..+ +-+|+|+-. |+.+..+ -.+++.+|+... ...+.++ -+.+++|||. |.-||
T Consensus 4 ~SprR~elL~~~--g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~K----------A~~v~~~~~~~~vI~aDTvV~~~g 71 (181)
T PRK14364 4 SSPRRRELLQQL--GLNFEIYSPDIDESVHEGELVHQYVERLAREK----------AQAVLNIFPDSVIIAADTSLGLDG 71 (181)
T ss_pred CCHHHHHHHHHC--CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCEEEEeCeEEEECC
Confidence 343333455443 677887743 4333222 346677776554 1111221 3679999999 55799
Q ss_pred CeeehhcHHHHH--HHHhhCCCcEEEE
Q psy2575 134 GLRSVCGTHAVA--LAAQHYSIPYPCT 158 (165)
Q Consensus 134 ~vvnk~GT~~lA--l~Ak~~~vPv~V~ 158 (165)
.++.|-.+..=| ++-+..+....|.
T Consensus 72 ~ilgKP~~~eeA~~~L~~lsG~~h~V~ 98 (181)
T PRK14364 72 QIIGKPDSKQHAFDIWKQLSGRWHDVF 98 (181)
T ss_pred EEecCCCCHHHHHHHHHHhCCCCeEEE
Confidence 999999987655 4455556554443
No 299
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.66 E-value=76 Score=24.08 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=5.9
Q ss_pred HhhcCCceEEEcc
Q psy2575 97 LAKSKIQTVLIPD 109 (165)
Q Consensus 97 L~~~GI~v~~I~d 109 (165)
+...+-+...+.|
T Consensus 78 ~~~~~~d~i~~~D 90 (229)
T cd04192 78 IKAAKGDWIVTTD 90 (229)
T ss_pred HHHhcCCEEEEEC
Confidence 3334445555544
No 300
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=53.48 E-value=50 Score=28.97 Aligned_cols=38 Identities=11% Similarity=0.292 Sum_probs=29.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc
Q psy2575 76 KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI 116 (165)
Q Consensus 76 ~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m 116 (165)
.++|.|+| ||+.+ ++.+++++.|..+.+|+|.-+...+
T Consensus 155 dltV~vLd-RpRH~--~lI~eiR~~GarI~Li~DGDVa~ai 192 (321)
T PRK12388 155 KLRMVTLD-KPRLS--AAIEEATQLGVKVFALPDGDVAASV 192 (321)
T ss_pred HeEEEEEc-CchHH--HHHHHHHHcCCeEEEeccccHHHHH
Confidence 46666664 78765 7899999999999999997665543
No 301
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=53.45 E-value=99 Score=23.57 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=44.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHhhc-CCceEEEc------cchHHHhch--hCCEEEEccceeecCCCeeehhcHHHHHH
Q psy2575 76 KFQCIVMENSPENKGHELAVSLAKS-KIQTVLIP------DSAMFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVAL 146 (165)
Q Consensus 76 ~f~ViV~Es~P~~eG~~la~~L~~~-GI~v~~I~------dsav~~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl 146 (165)
.|+++.++ -.++.|.+. |++|+.+. +..+...++ +++.|+-=.|-...+ -.....+.|-.
T Consensus 32 Gf~l~AT~--------gTa~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~~~~---~~~~D~~~IRR 100 (142)
T PRK05234 32 QHELYATG--------TTGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPLTAQ---PHDPDVKALLR 100 (142)
T ss_pred CCEEEEeC--------hHHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCCCCC---cccchHHHHHH
Confidence 68877664 267788888 88887652 122334443 488887654322222 11345668889
Q ss_pred HHhhCCCcEEE
Q psy2575 147 AAQHYSIPYPC 157 (165)
Q Consensus 147 ~Ak~~~vPv~V 157 (165)
+|-.++||++-
T Consensus 101 ~Av~~~IP~~T 111 (142)
T PRK05234 101 LADVWNIPVAT 111 (142)
T ss_pred HHHHcCCCEEc
Confidence 99999999874
No 302
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=53.37 E-value=1.5e+02 Score=25.63 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHhcc----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 34 ANPTSDTAPSQACEH----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
....++.++++.... +...++++|-|.+..+..++.... ++.-+|++. +|.+.+... .....|+++..++.
T Consensus 75 ~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~-~~gd~Vlv~--~p~y~~~~~--~~~~~g~~~~~~~~ 149 (403)
T TIGR01265 75 ALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA-NPGANILVP--RPGFPLYDT--RAAFSGLEVRLYDL 149 (403)
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC-CCCCEEEEe--CCCchhHHH--HHHHcCCEEEEecC
Confidence 346678888765432 344567777666544444444332 233456655 365544332 34457877776642
Q ss_pred ----------chHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 ----------SAMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 ----------sav~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..+...+ ++...+++-. .--+.|.++..-=-..++-.|+++++++++
T Consensus 150 ~~~~~~~~d~~~l~~~~~~~~~~v~i~~-p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 150 LPEKDWEIDLDGLEALADEKTVAIVVIN-PSNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred CcccCCccCHHHHHHHhCcCccEEEEec-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 1222222 2333444321 112233333322234577788999998875
No 303
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=53.34 E-value=94 Score=27.91 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=42.4
Q ss_pred ChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecccC
Q psy2575 88 NKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLNIG 164 (165)
Q Consensus 88 ~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~~~ 164 (165)
+||.++.+.|...+ +.--|++|..|=++ |+|++..+.+.++|++-+..+..|
T Consensus 66 ceg~~~l~~l~~~~----------------~~gcv~lGP~CtYa---------t~~~~~~~~~~~~P~ISaGsfgls 117 (380)
T cd06369 66 CEGVELLKKLSVTG----------------RLGCVLLGPSCTYA---------TFQMVDDEFNLSLPIISAGSFGLS 117 (380)
T ss_pred chHHHHHHHHHhcC----------------ccCcEEEcCcccee---------hhhhhhhhhcCCCceEeccccccC
Confidence 68999999987655 66678999888665 788999999999999988776554
No 304
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=53.30 E-value=37 Score=29.71 Aligned_cols=55 Identities=24% Similarity=0.440 Sum_probs=37.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCC
Q psy2575 76 KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGG 134 (165)
Q Consensus 76 ~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~ 134 (165)
.++|.|+| ||+.+ ++.+++++.|..+.+|+|.-+...+.-+.-= -|.|.++.-|+
T Consensus 158 dltV~vLd-RpRH~--~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~-s~vD~~~GiGG 212 (319)
T PRK09479 158 DLTVVVLD-RPRHE--ELIAEIREAGARVKLISDGDVAGAIATAFPD-TGVDILMGIGG 212 (319)
T ss_pred HeEEEEEc-CchHH--HHHHHHHHcCCeEEEeccccHHHHHHHhcCC-CCeeEEEEcCc
Confidence 46666664 78765 7899999999999999998776655432000 24555555454
No 305
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=53.11 E-value=48 Score=28.52 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=45.0
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhch--hCCEEEEcccee
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS--RVNKIIIGTHTV 129 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~--~v~~VllGAd~V 129 (165)
..+||..|.+..-..++..+++ ..++|++++..|...|..++... +.+-+....++..+.+ ++|.|+.+.+.+
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~-~G~~v~~~~~~~~~~~~~~ad~~----~~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 86 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQR-LGVEVIAVDRYANAPAMQVAHRS----HVIDMLDGDALRAVIEREKPDYIVPEIEAI 86 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCCCCchHHhhhhe----EECCCCCHHHHHHHHHHhCCCEEEEeeCcC
Confidence 4589999998766666665544 67899999999987776654431 1110111123444445 578787776543
No 306
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=52.92 E-value=52 Score=28.73 Aligned_cols=56 Identities=21% Similarity=0.388 Sum_probs=37.0
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCC
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGG 134 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~ 134 (165)
..++|.|+| ||+.+ ++.+++++.|..+.+|+|.-+...+.-+.- =-|.|.++.-|+
T Consensus 154 ~dltV~vLd-RpRH~--~lI~eiR~~Gari~Li~DGDV~~ai~~~~~-~s~vD~~~GiGG 209 (309)
T cd01516 154 EDLTVVVLD-RPRHA--ALIEEIREAGARIKLIPDGDVAAAIATALP-GSGVDVLMGIGG 209 (309)
T ss_pred hHeEEEEEc-CchHH--HHHHHHHHcCCeEEEeccccHHHHHHHhCC-CCCeeEEEECCC
Confidence 346777765 77764 789999999999999999777555432100 024555555453
No 307
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=52.92 E-value=94 Score=24.46 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCe--eehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 90 GHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGL--RSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 90 G~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~v--vnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
-..+++.|++.|+++.++.+. .-+.++|.++++--....+ .. ....|......-+...++|++-+|
T Consensus 12 ~~~i~~~l~~~G~~v~~~~~~---~~l~~~d~iiipG~~~~~~-~~~~~~~~~~~~~i~~~~~~~~pvlGIC 79 (205)
T PRK13141 12 LRSVEKALERLGAEAVITSDP---EEILAADGVILPGVGAFPD-AMANLRERGLDEVIKEAVASGKPLLGIC 79 (205)
T ss_pred HHHHHHHHHHCCCeEEEECCH---HHhccCCEEEECCCCchHH-HHHHHHHcChHHHHHHHHHCCCcEEEEC
Confidence 367899999999999998653 2356788877753111000 00 011233343334445789999877
No 308
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=52.51 E-value=88 Score=25.60 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=31.1
Q ss_pred cCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEc
Q psy2575 83 ENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIG 125 (165)
Q Consensus 83 Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllG 125 (165)
-++-..+-.+.++..++.|+++..|++ .-..+.+.+|.++.-
T Consensus 184 ~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 184 HTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTL 225 (284)
T ss_pred CCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEec
Confidence 333344556779999999999999997 445566678998864
No 309
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=52.50 E-value=1.3e+02 Score=24.80 Aligned_cols=110 Identities=10% Similarity=0.038 Sum_probs=59.0
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHH-HHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc-------
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKI-VELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD------- 109 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~t-V~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d------- 109 (165)
.++.-+.+++++....+++..+.|+. ....+.... ++.-+|++. +|...+. ...+...|..+.+++.
T Consensus 61 i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~-~~gd~Vlv~--~~~h~s~--~~~~~~~g~~~~~v~~~~~~~~~ 135 (294)
T cd00615 61 IKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC-GPGDKILID--RNCHKSV--INGLVLSGAVPVYLKPERNPYYG 135 (294)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcC-CCCCEEEEe--CCchHHH--HHHHHHCCCEEEEecCccCcccC
Confidence 44444555666665566653343433 344444332 345566666 4554443 2334446776666532
Q ss_pred -------chHHHhch---hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 -------SAMFGLIS---RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 -------sav~~~m~---~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..+...+. ++..|++... ...|.+.. -..++-+|+++++|++|
T Consensus 136 ~~~~i~~~~l~~~l~~~~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~liv 188 (294)
T cd00615 136 IAGGIPPETFKKALIEHPDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLV 188 (294)
T ss_pred cCCCCCHHHHHHHHHhCCCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEE
Confidence 12333342 3555666532 23554443 35788999999999987
No 310
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=52.49 E-value=1.4e+02 Score=25.07 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=49.1
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH-HHHHHH-hhcCCceEEEccch--------HHHhchhCCEE
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH-ELAVSL-AKSKIQTVLIPDSA--------MFGLISRVNKI 122 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~-~la~~L-~~~GI~v~~I~dsa--------v~~~m~~v~~V 122 (165)
++++|-|.+..+..++.. .-+..-+|++.+ +.+.+. ...+.+ ...|+++.+++... +...+..-.++
T Consensus 64 ~v~~~~g~t~al~~~~~~-~~~~gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~ 140 (376)
T TIGR01977 64 HVVFTNNATTALNIALKG-LLKEGDHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTKL 140 (376)
T ss_pred eEEEeCCHHHHHHHHHHh-ccCCCCEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCeE
Confidence 456666665555544443 223445677654 222221 112223 33588888775321 22223221233
Q ss_pred EEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 123 IIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 123 llGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
++-...-.+.|.+.. . -.|+-+|++++++++|
T Consensus 141 v~~~~~~n~tG~~~~-~--~~i~~l~~~~~~~liv 172 (376)
T TIGR01977 141 IVVSHASNVTGTILP-I--EEIGELAQENGIFFIL 172 (376)
T ss_pred EEEECCCCCccccCC-H--HHHHHHHHHcCCEEEE
Confidence 333333334554443 2 3578889999998887
No 311
>PRK06756 flavodoxin; Provisional
Probab=52.28 E-value=52 Score=24.40 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=36.3
Q ss_pred HHHHHhhcCCceEEEccch--HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHH--hhCCCcEEEEee
Q psy2575 93 LAVSLAKSKIQTVLIPDSA--MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAA--QHYSIPYPCTFL 160 (165)
Q Consensus 93 la~~L~~~GI~v~~I~dsa--v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~A--k~~~vPv~V~~~ 160 (165)
+++.|.+.|+++.++.... ...-+.++|.|++|+-+ ..+|..-..+-.+ +..+. .-.++|+.+.+-
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt-~~~g~~p~~~~~f-l~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 22 IAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYT-WGDGDLPDDFLDF-YDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCC-CCCCCCcHHHHHH-HHHHhcCCCCCCEEEEEeC
Confidence 3556667788877665322 23457789999999833 3344332222222 11111 235788887754
No 312
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=52.09 E-value=57 Score=26.40 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=44.5
Q ss_pred cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCC-ceEEEccchHHHhc--hhCCEEEEc
Q psy2575 49 IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKI-QTVLIPDSAMFGLI--SRVNKIIIG 125 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI-~v~~I~dsav~~~m--~~v~~VllG 125 (165)
+++|++||=+|.++--...+....-++..+|+-+|-.|..- ..-.+.|.+.|+ +++++......-.- ...|.++++
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEES
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEe
Confidence 68999999987554333323222225677899999777532 122566777787 57777643332222 237888887
Q ss_pred cce
Q psy2575 126 THT 128 (165)
Q Consensus 126 Ad~ 128 (165)
+-+
T Consensus 149 ~a~ 151 (209)
T PF01135_consen 149 AAV 151 (209)
T ss_dssp SBB
T ss_pred ecc
Confidence 643
No 313
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=52.08 E-value=1.4e+02 Score=24.93 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCEEEEecCCHHH---HHHHHHHHh--CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc-chHHHhchhCCEEEEc
Q psy2575 52 NEIILTLGYSKIV---ELFLKNAAQ--HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD-SAMFGLISRVNKIIIG 125 (165)
Q Consensus 52 ~~~ILT~g~S~tV---~~~L~~A~~--~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d-sav~~~m~~v~~VllG 125 (165)
.-+|+.++.+... ...+..|.+ .+...+++.-..... ..+.+.+. .|+++.+..- ..+..+|+.+|.++..
T Consensus 183 ~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~--~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~ 259 (357)
T PRK00726 183 KPTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL--EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICR 259 (357)
T ss_pred CeEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH--HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEEC
Confidence 3467778776432 234434433 222233333222221 34444555 7877555442 3678899999998863
Q ss_pred cceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 126 THTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 126 Ad~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+ |+ ...+-|-..++|+++..
T Consensus 260 ~-------------g~-~~~~Ea~~~g~Pvv~~~ 279 (357)
T PRK00726 260 A-------------GA-STVAELAAAGLPAILVP 279 (357)
T ss_pred C-------------CH-HHHHHHHHhCCCEEEec
Confidence 2 21 33456778899999864
No 314
>PRK06234 methionine gamma-lyase; Provisional
Probab=52.01 E-value=1.7e+02 Score=25.72 Aligned_cols=111 Identities=6% Similarity=-0.001 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-HH-HHHHHhhcCCceEEEccch--
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-HE-LAVSLAKSKIQTVLIPDSA-- 111 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~~-la~~L~~~GI~v~~I~dsa-- 111 (165)
...+.|++ +....+.+++-|.+..+...+.... +..-+|++.+ |.+.+ .. +...+...|+++.++....
T Consensus 68 ~Le~~iA~----~~g~~~~l~~~sG~~Ai~~al~~ll-~~Gd~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e 140 (400)
T PRK06234 68 EVENKLAL----LEGGEAAVVAASGMGAISSSLWSAL-KAGDHVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLE 140 (400)
T ss_pred HHHHHHHH----HhCCCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHH
Confidence 33444554 3433455555555555544444333 2334666654 54433 22 2455677899999987432
Q ss_pred -HHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhC--CCcEEE
Q psy2575 112 -MFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHY--SIPYPC 157 (165)
Q Consensus 112 -v~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~--~vPv~V 157 (165)
+...+. +...|++. .---+.|.+.. --.++-+|+++ ++++++
T Consensus 141 ~l~~~i~~~tklI~ie-sP~NPtG~v~d---l~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 141 EVRNALKANTKVVYLE-TPANPTLKVTD---IKAISNIAHENNKECLVFV 186 (400)
T ss_pred HHHHHhccCCeEEEEE-CCCCCCCCcCC---HHHHHHHHHhcCCCCEEEE
Confidence 333333 23333332 22223444433 34677888887 677665
No 315
>PRK08064 cystathionine beta-lyase; Provisional
Probab=51.84 E-value=1.6e+02 Score=25.64 Aligned_cols=112 Identities=7% Similarity=-0.043 Sum_probs=58.7
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH--HHHHHHHhhcCCceEEEccch---H
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG--HELAVSLAKSKIQTVLIPDSA---M 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG--~~la~~L~~~GI~v~~I~dsa---v 112 (165)
.+...+..+++......+++-+.+..+...|. ..+ ..-+|++.+ |.+.+ ..+...+...|+++..++... +
T Consensus 56 ~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~-~Gd~Vlv~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l 131 (390)
T PRK08064 56 REALEDIIAELEGGTKGFAFASGMAAISTAFL-LLS-KGDHVLISE--DVYGGTYRMITEVLSRFGIEHTFVDMTNLEEV 131 (390)
T ss_pred HHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhC-CCCEEEEcc--CccchHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence 33444444455544455555444444444443 333 334666653 54443 233455677899999987532 3
Q ss_pred HHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+. +...|++ ..---+.|.+. . -..++-+|++++++++|
T Consensus 132 ~~~l~~~tklV~l-~~p~NptG~~~-d--l~~I~~la~~~g~~vvv 173 (390)
T PRK08064 132 AQNIKPNTKLFYV-ETPSNPLLKVT-D--IRGVVKLAKAIGCLTFV 173 (390)
T ss_pred HHhcCCCceEEEE-ECCCCCCcEec-c--HHHHHHHHHHcCCEEEE
Confidence 33342 3434433 22222334332 2 23677889999988876
No 316
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=51.81 E-value=1.6e+02 Score=25.48 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=55.7
Q ss_pred CCCEEEEecCCH----HHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc---hHHHhchh--CC
Q psy2575 51 SNEIILTLGYSK----IVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS---AMFGLISR--VN 120 (165)
Q Consensus 51 ~~~~ILT~g~S~----tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds---av~~~m~~--v~ 120 (165)
.+..|-.|+-|- .+..++....+ +...+|+++-.. ..|.++++++...++.+.+.|.. .+..++++ -|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 467899998772 33334444444 456777766543 34567777666667888888843 33344543 46
Q ss_pred EEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 121 KIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 121 ~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.+++.-.-+.+| +...|+..++|+++..
T Consensus 127 ~v~~~~~~~~~~-----------~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 127 LVIIMETELWPN-----------LIAELKRRGIPLVLAN 154 (425)
T ss_pred EEEEEecchhHH-----------HHHHHHHCCCCEEEEe
Confidence 554321111222 3345788899998763
No 317
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=51.79 E-value=1.2e+02 Score=23.99 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHH--HHHhhcCCceEEEccc------
Q psy2575 39 DTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELA--VSLAKSKIQTVLIPDS------ 110 (165)
Q Consensus 39 ~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la--~~L~~~GI~v~~I~ds------ 110 (165)
+++++.-.+-+..|.+|..+|.+..-.-...-+.+ |. -.+...|+++....|.
T Consensus 31 ~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~-------------------l~~~~~~~r~g~~~~~~~d~~~~~~~ 91 (192)
T PRK00414 31 QRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEE-------------------LTGRYRENRPGYPAIAISDVSHLSCV 91 (192)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHH-------------------hcccccCCCCCceEEecCcHHHHhhh
Q ss_pred ------------hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 111 ------------AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 111 ------------av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
.+....++-|.+|+ +...| ...-...++..||+.++|++.++...
T Consensus 92 ~~d~~~~~~~~~~~~~~~~~~Dv~I~----iS~SG---~t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 92 SNDFGYDYVFSRYVEAVGREGDVLLG----ISTSG---NSGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred hccCCHHHHHHHHHHHhCCCCCEEEE----EeCCC---CCHHHHHHHHHHHHCCCeEEEEeCCC
No 318
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=51.67 E-value=43 Score=26.87 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=8.5
Q ss_pred HHHHHHhhcCCceEEEcc
Q psy2575 92 ELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~d 109 (165)
+|+..|.+.|+++++.+-
T Consensus 25 ~L~~~l~~~g~~v~Vyc~ 42 (185)
T PF09314_consen 25 ELAPRLVSKGIDVTVYCR 42 (185)
T ss_pred HHHHHHhcCCceEEEEEc
Confidence 334444445555555443
No 319
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=51.65 E-value=17 Score=28.65 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCceEEEEecCCCCChHHHHHHH
Q psy2575 64 VELFLKNAAQHRKFQCIVMENSPENKGHELAVS 96 (165)
Q Consensus 64 V~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~ 96 (165)
..+.|..+++ +..+++++=+||...-+.+++.
T Consensus 21 ~~~~l~~l~~-~gi~~~i~TgR~~~~~~~~~~~ 52 (221)
T TIGR02463 21 AAPWLTRLQE-AGIPVILCTSKTAAEVEYLQKA 52 (221)
T ss_pred HHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHH
Confidence 3455665543 5577777777777654444444
No 320
>PLN00203 glutamyl-tRNA reductase
Probab=51.64 E-value=93 Score=28.89 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=52.2
Q ss_pred HHHHHHhcccCC----CCEEEEecCCHHHHHHHHHHHhCCce-EEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHH
Q psy2575 40 TAPSQACEHIHS----NEIILTLGYSKIVELFLKNAAQHRKF-QCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFG 114 (165)
Q Consensus 40 ~Ia~~a~~~I~~----~~~ILT~g~S~tV~~~L~~A~~~~~f-~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~ 114 (165)
..++.+.+.+.+ +.+|+.+|.+..-...+..+.. +.+ +|++..-.+ .....++..+. |..+.+++......
T Consensus 250 ~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-~G~~~V~V~nRs~-era~~La~~~~--g~~i~~~~~~dl~~ 325 (519)
T PLN00203 250 AAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-KGCTKMVVVNRSE-ERVAALREEFP--DVEIIYKPLDEMLA 325 (519)
T ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-CCCCeEEEEeCCH-HHHHHHHHHhC--CCceEeecHhhHHH
Confidence 344555555543 6899999999877777766654 333 566664332 23344454442 55566666566777
Q ss_pred hchhCCEEEEcc
Q psy2575 115 LISRVNKIIIGT 126 (165)
Q Consensus 115 ~m~~v~~VllGA 126 (165)
.+.++|.||...
T Consensus 326 al~~aDVVIsAT 337 (519)
T PLN00203 326 CAAEADVVFTST 337 (519)
T ss_pred HHhcCCEEEEcc
Confidence 888999988764
No 321
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.62 E-value=92 Score=22.68 Aligned_cols=92 Identities=11% Similarity=0.091 Sum_probs=52.7
Q ss_pred EEEEecCCHHH-HHHHHHHHhCCceEEE-EecCCC-CChHHHHHHHHh--hcCCceEEEccchHHHhchhCCEEEEccce
Q psy2575 54 IILTLGYSKIV-ELFLKNAAQHRKFQCI-VMENSP-ENKGHELAVSLA--KSKIQTVLIPDSAMFGLISRVNKIIIGTHT 128 (165)
Q Consensus 54 ~ILT~g~S~tV-~~~L~~A~~~~~f~Vi-V~Es~P-~~eG~~la~~L~--~~GI~v~~I~dsav~~~m~~v~~VllGAd~ 128 (165)
.|+.+|++--+ ..+...+.+.+.+++. +.+.+| ...|+.+...+. ..|++++ ..+..++.++|.++--.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~~~~~DVvIDfT-- 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEELLEEADVVIDFT-- 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHHTTH-SEEEEES--
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHhcccCCEEEEcC--
Confidence 57888984344 3344444445778844 667776 456666654433 3445444 34566677677554321
Q ss_pred eecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 129 VMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 129 V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+.-.+...+..|.++++|+++.+
T Consensus 76 --------~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 76 --------NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp ---------HHHHHHHHHHHHHHT-EEEEE-
T ss_pred --------ChHHhHHHHHHHHhCCCCEEEEC
Confidence 55677777888888899988753
No 322
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=51.33 E-value=92 Score=25.44 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHh----CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeec
Q psy2575 60 YSKIVELFLKNAAQ----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMA 131 (165)
Q Consensus 60 ~S~tV~~~L~~A~~----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~ 131 (165)
.+.+.+..+..|++ ..++-|=|.=+ .+|.+.++.|++.||+|.....-++...+--+. .||+-|.+
T Consensus 59 ~~~~~~~mi~~a~~l~~~~~~i~iKIP~T---~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yisp 128 (213)
T TIGR00875 59 ISLDAEGMVEEAKELAKLAPNIVVKIPMT---SEGLKAVKILKKEGIKTNVTLVFSAAQALLAAK---AGATYVSP 128 (213)
T ss_pred eeCCHHHHHHHHHHHHHhCCCeEEEeCCC---HHHHHHHHHHHHCCCceeEEEecCHHHHHHHHH---cCCCEEEe
Confidence 45567888888887 33333323322 389999999999999988776555544432211 27776665
No 323
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=51.32 E-value=1.2e+02 Score=23.91 Aligned_cols=94 Identities=16% Similarity=0.240 Sum_probs=45.5
Q ss_pred CEEEEecCCH----HHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc---hHHHhchhC--CEE
Q psy2575 53 EIILTLGYSK----IVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS---AMFGLISRV--NKI 122 (165)
Q Consensus 53 ~~ILT~g~S~----tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds---av~~~m~~v--~~V 122 (165)
..|..|+-|- .+..++...++ ....+++++-+.| .|.++++.+-..++.+.|.|.. ++..++.+. +.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~ 99 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTP--TGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLL 99 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-C--CHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEE
Confidence 7899998882 22334444433 2467888876554 3778887776668889998853 234455542 444
Q ss_pred EEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 123 IIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 123 llGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
++-=.-+-+| +-..|++.++|++.+-
T Consensus 100 i~~EtElWPn-----------ll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 100 IWVETELWPN-----------LLREAKRRGIPVVLVN 125 (186)
T ss_dssp EEES----HH-----------HHHH-----S-EEEEE
T ss_pred EEEccccCHH-----------HHHHHhhcCCCEEEEe
Confidence 4433335555 7788899999999874
No 324
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=51.31 E-value=1.3e+02 Score=24.28 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeee-------hhcHHHHHHHHhhCCCcEEEEe
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRS-------VCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvn-------k~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
..+++.|+..|+++.++.+.. -+.++|.++++- ++-.. +.|-.....-+-+.++|++-+|
T Consensus 15 ~sl~~al~~~g~~v~vv~~~~---~l~~~d~iIlPG------~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIC 81 (210)
T CHL00188 15 HSVSRAIQQAGQQPCIINSES---ELAQVHALVLPG------VGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGIC 81 (210)
T ss_pred HHHHHHHHHcCCcEEEEcCHH---HhhhCCEEEECC------CCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEEC
Confidence 567889999999999887642 245677766653 12111 1232222222334689999877
No 325
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=51.29 E-value=82 Score=22.50 Aligned_cols=19 Identities=11% Similarity=-0.074 Sum_probs=11.2
Q ss_pred HHHHHHHHhhCCCcEEEEe
Q psy2575 141 THAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 141 T~~lAl~Ak~~~vPv~V~~ 159 (165)
+..++-.||+.++|++.++
T Consensus 59 ~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 59 TLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 3445556666666666655
No 326
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=51.07 E-value=87 Score=26.09 Aligned_cols=15 Identities=7% Similarity=-0.190 Sum_probs=12.7
Q ss_pred HHHHHhhCCCcEEEE
Q psy2575 144 VALAAQHYSIPYPCT 158 (165)
Q Consensus 144 lAl~Ak~~~vPv~V~ 158 (165)
.|.+|+..+.||+.+
T Consensus 209 ~a~LA~~~~apvvp~ 223 (289)
T PRK08706 209 LSRIAALANAKVIPA 223 (289)
T ss_pred HHHHHHhcCCeEEEE
Confidence 678999999999854
No 327
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=50.69 E-value=1.4e+02 Score=25.21 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc--c-chH
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP--D-SAM 112 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~--d-sav 112 (165)
..++.+.+...++....+.|++.+.+.....++.... ++.-+|++.+ |.+.+....- ...|.++..++ | ..+
T Consensus 87 ~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~-~~gd~vi~~~--~~~~~~~~~~--~~~~~~~~~~~~~d~~~l 161 (397)
T PRK06939 87 DLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLL-GKEDAIISDA--LNHASIIDGV--RLCKAKRYRYANNDMADL 161 (397)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhC-CCCCEEEEEh--hhhHHHHHHH--HhcCCceEEeCCCCHHHH
Confidence 4466677766666654455555444555555544333 3444566543 5554443322 33454444443 2 222
Q ss_pred HHhchh------CCEEEEccceeec-CCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLISR------VNKIIIGTHTVMA-NGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~~------v~~VllGAd~V~~-nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+++ -.++++ ...++. .|. +.. -..++-+|+++++++++
T Consensus 162 ~~~i~~~~~~~~~~~~v~-~~~v~~~~G~-~~~--~~~l~~la~~~~~~li~ 209 (397)
T PRK06939 162 EAQLKEAKEAGARHKLIA-TDGVFSMDGD-IAP--LPEICDLADKYDALVMV 209 (397)
T ss_pred HHHHHhhhccCCCCeEEE-EecCcCCCCC-cCC--HHHHHHHHHHhCCEEEE
Confidence 233332 122332 222222 222 222 24577789999998875
No 328
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=50.66 E-value=71 Score=24.49 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCceEEEccch-HHH---hchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 91 HELAVSLAKSKIQTVLIPDSA-MFG---LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsa-v~~---~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
..+.+.|++.|++++++.-.. ... -+.+.|.++++--. |+....-+...+..-+...++|++-+|
T Consensus 11 ~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~----~~~~d~~~~~~~i~~~~~~~~PilGIC 79 (192)
T PF00117_consen 11 HSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGP----GSPYDIEGLIELIREARERKIPILGIC 79 (192)
T ss_dssp HHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECES----SSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcC----CccccccccccccccccccceEEEEEe
Confidence 467888999998888887443 222 26678888776322 222224455556666777899999776
No 329
>PRK07806 short chain dehydrogenase; Provisional
Probab=50.59 E-value=72 Score=25.01 Aligned_cols=101 Identities=10% Similarity=0.075 Sum_probs=49.7
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc-c----chHHHhch-------h
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP-D----SAMFGLIS-------R 118 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~-d----sav~~~m~-------~ 118 (165)
.+.++++.|-|+-+=..+.+....+..+|++...++......++..|...|.++..+. | ..+..++. .
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 3567777776655433333222223456766543332233455666666554433321 2 22222332 3
Q ss_pred CCEEEEccceeec------CCCeeehhcHHHHHHHHhhC
Q psy2575 119 VNKIIIGTHTVMA------NGGLRSVCGTHAVALAAQHY 151 (165)
Q Consensus 119 v~~VllGAd~V~~------nG~vvnk~GT~~lAl~Ak~~ 151 (165)
+|.++.-|-.... .=--+|..|+..++-.+..+
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~ 123 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPL 123 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhh
Confidence 6666654421100 00126888999998888754
No 330
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=50.57 E-value=76 Score=21.39 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=29.6
Q ss_pred hcCCceEEE--ccc---hHHHhch--hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 99 KSKIQTVLI--PDS---AMFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 99 ~~GI~v~~I--~ds---av~~~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
..|++++.. ... .+..... ++|.+++|+..- +...........-.+.++.++||+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~---~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 67 EAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGR---SGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred cCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCC---CccceeeeccHHHHHHhCCCCCEEeC
Confidence 357776543 332 2222332 379999998642 22222122222334446688998864
No 331
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=50.52 E-value=54 Score=25.47 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=36.7
Q ss_pred EEEecCCHHHHHHHHHHHh-----CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccch
Q psy2575 55 ILTLGYSKIVELFLKNAAQ-----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSA 111 (165)
Q Consensus 55 ILT~g~S~tV~~~L~~A~~-----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsa 111 (165)
++.+..++.|..|+....+ -++.+++++ |...++.|.+.|+++..+++..
T Consensus 176 ~iiftS~~~v~~f~~~~~~~~~~~~~~~~~~ai-------g~~t~~~l~~~g~~~~~~~~~~ 230 (239)
T cd06578 176 AVLFTSPSTVRNLLELLGKEGRALLKNVKIAAI-------GPRTAEALRELGLKVVIVAESP 230 (239)
T ss_pred EEEEeCHHHHHHHHHHHhhhhhhhhcCCeEEEE-------CHHHHHHHHHcCCCceeeecCC
Confidence 4455555588888876653 245666666 8899999999999988887654
No 332
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=50.40 E-value=1e+02 Score=26.27 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=55.4
Q ss_pred HHHHHhcccC--CCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhch
Q psy2575 41 APSQACEHIH--SNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS 117 (165)
Q Consensus 41 Ia~~a~~~I~--~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~ 117 (165)
+...+.+++. +..++..+|.+.....-+..... -.--+|.|..-+| ..-..++..+++.|+++....| +...++
T Consensus 115 ~sala~~~La~~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~-~~~~~~~~~~~~~~~~v~~~~~--~~~av~ 191 (313)
T PF02423_consen 115 VSALAARYLARPDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSP-ERAEAFAARLRDLGVPVVAVDS--AEEAVR 191 (313)
T ss_dssp HHHHHHHHHS-TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSH-HHHHHHHHHHHCCCTCEEEESS--HHHHHT
T ss_pred HHHHHHHHhCcCCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccCh-hHHHHHHHhhccccccceeccc--hhhhcc
Confidence 3445566663 45688889999766655554433 2233455554333 2235789999988888887766 566688
Q ss_pred hCCEEEEccce----------eecCCCeeehhcHH
Q psy2575 118 RVNKIIIGTHT----------VMANGGLRSVCGTH 142 (165)
Q Consensus 118 ~v~~VllGAd~----------V~~nG~vvnk~GT~ 142 (165)
.+|.|+...-+ .+..|..++-+|++
T Consensus 192 ~aDii~taT~s~~~~P~~~~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 192 GADIIVTATPSTTPAPVFDAEWLKPGTHINAIGSY 226 (313)
T ss_dssp TSSEEEE----SSEEESB-GGGS-TT-EEEE-S-S
T ss_pred cCCEEEEccCCCCCCccccHHHcCCCcEEEEecCC
Confidence 88887743221 34578888888875
No 333
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=50.39 E-value=53 Score=25.65 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=30.3
Q ss_pred CCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCC
Q psy2575 50 HSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKI 102 (165)
Q Consensus 50 ~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI 102 (165)
-.|..++..|+|..|-+-|.....++..+|.++.++-. ++.+.++++.|
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~----~l~~~~~~ADI 82 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK----NLQEITRRADI 82 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS----SHHHHHTTSSE
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC----cccceeeeccE
Confidence 45788999999988877766666667788888876642 24444444443
No 334
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=50.37 E-value=1.7e+02 Score=25.25 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhcc----cC-CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 35 NPTSDTAPSQACEH----IH-SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~-~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
...++.++++.... +. +.++++|-|.+..+...+.... ++.-+|++. .|.+.+.. ..+...|+++..++.
T Consensus 70 ~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vl~~--~p~y~~~~--~~~~~~g~~~~~~~~ 144 (391)
T PRK07309 70 LELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL-EPGDKVLLP--APAYPGYE--PIVNLVGAEIVEIDT 144 (391)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEe--CCCCcchH--HHHHHcCCEEEEEec
Confidence 56788888866432 23 3467777777766555554333 233456655 36665543 334457888777763
Q ss_pred ch---------HHHhch----hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 SA---------MFGLIS----RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 sa---------v~~~m~----~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.. +...+. +...+++- .---+.|.++...--..++-.|++|++++++
T Consensus 145 ~~~~~~~d~~~l~~~~~~~~~~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 145 TENDFVLTPEMLEKAILEQGDKLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred CCcCCcCCHHHHHHHhhccCCCeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 21 111222 23333332 1112335555555556788888999998885
No 335
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=50.35 E-value=56 Score=24.54 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=30.5
Q ss_pred EEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh
Q psy2575 54 IILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK 99 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~ 99 (165)
+.++||.+..+..-+....+...+++++....| ..|......|.+
T Consensus 2 VFIvhg~~~~~~~~v~~~L~~~~~ep~i~~~~~-~~g~tiie~le~ 46 (125)
T PF10137_consen 2 VFIVHGRDLAAAEAVERFLEKLGLEPIIWHEQP-NLGQTIIEKLEE 46 (125)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCCceEEeecCC-CCCCchHHHHHH
Confidence 567788887776666666555678888887777 556555555544
No 336
>PRK04311 selenocysteine synthase; Provisional
Probab=50.33 E-value=1.7e+02 Score=26.62 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=57.8
Q ss_pred HHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCC--ChHHHHHHHHhhcCCceEEEccc------hHHH
Q psy2575 43 SQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPE--NKGHELAVSLAKSKIQTVLIPDS------AMFG 114 (165)
Q Consensus 43 ~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~--~eG~~la~~L~~~GI~v~~I~ds------av~~ 114 (165)
+..++++...+.+++-+.+..+...| .+.. +.-+|++....-. .....+-..+...|+.+..+.-. .+..
T Consensus 134 ~~lA~l~Gae~a~vv~sgtaAl~l~l-~~l~-~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~ 211 (464)
T PRK04311 134 ALLCALTGAEDALVVNNNAAAVLLAL-NALA-AGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQ 211 (464)
T ss_pred HHHHHHhCCCeEEEECCHHHHHHHHH-HHhC-CCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHH
Confidence 33344554445555545444444444 3332 4457888754222 22233445567789887776521 2233
Q ss_pred hchhCCEEE-Eccceee-cCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 115 LISRVNKII-IGTHTVM-ANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 115 ~m~~v~~Vl-lGAd~V~-~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.+..=++.+ +-..+-+ -.| .....--..++-+||++++|+++=+
T Consensus 212 aI~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 212 AINENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred hcCccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 443323333 3322211 122 1122345668999999999999844
No 337
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=50.31 E-value=76 Score=24.19 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=23.6
Q ss_pred CCCEEEEecCCH-HHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 51 SNEIILTLGYSK-IVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 51 ~~~~ILT~g~S~-tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
+-++|++-..|+ -...++....+ ....+++..+...+ .+..+-.-++...=+...+.|+
T Consensus 27 ~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G-~~~a~n~g~~~a~gd~i~~lD~ 87 (224)
T cd06442 27 DYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGKRG-LGSAYIEGFKAARGDVIVVMDA 87 (224)
T ss_pred CeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCCCC-hHHHHHHHHHHcCCCEEEEEEC
Confidence 344555554442 12333433332 23344444443333 3333333333322255555543
No 338
>PRK06114 short chain dehydrogenase; Provisional
Probab=50.28 E-value=1.3e+02 Score=23.89 Aligned_cols=56 Identities=5% Similarity=0.046 Sum_probs=32.0
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEE
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVL 106 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~ 106 (165)
.+.++++.|-|+-+=..+.........+|+++..++...-..++..|.+.|-++..
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~ 62 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQ 62 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEE
Confidence 45677777877665443333333345688887655432224566777766644443
No 339
>PRK10537 voltage-gated potassium channel; Provisional
Probab=50.28 E-value=1.9e+02 Score=25.82 Aligned_cols=89 Identities=16% Similarity=0.055 Sum_probs=46.0
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc-----hhCCEEEEcc
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI-----SRVNKIIIGT 126 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m-----~~v~~VllGA 126 (165)
.+.++..||++.-+.+....++ +...+.++|..+ .+...+.|.++..- |..-...+ .+++.+++-.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~-~g~~vvVId~d~-------~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQ-RGQAVTVIVPLG-------LEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILALR 310 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHH-CCCCEEEEECch-------hhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEcC
Confidence 4567777777766665555443 223344444221 12333455555433 33333333 3455555543
Q ss_pred ceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 127 HTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 127 d~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+ +..-...+++.||+.+....++
T Consensus 311 ~---------dD~~Nl~ivL~ar~l~p~~kII 333 (393)
T PRK10537 311 D---------NDADNAFVVLAAKEMSSDVKTV 333 (393)
T ss_pred C---------ChHHHHHHHHHHHHhCCCCcEE
Confidence 2 3455677889999987443333
No 340
>KOG4180|consensus
Probab=50.27 E-value=15 Score=32.57 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHH-HhhCCCcEEEE
Q psy2575 92 ELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALA-AQHYSIPYPCT 158 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~-Ak~~~vPv~V~ 158 (165)
...++|.+.||...++.-+....-|+.+|+|+- +-.|| |+.+|.- -...++||+-+
T Consensus 79 ~~~~~l~k~giesklv~R~~lsq~i~waD~Vis----vGGDG-------TfL~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 79 FCQEELSKAGIESKLVSRNDLSQPIRWADMVIS----VGGDG-------TFLLAASRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHHhhCCcceeeeehhhccCcCchhhEEEE----ecCcc-------ceeehhhhhhccCCceeee
Confidence 457899999999999999999888999999883 23444 4333322 23457888754
No 341
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=50.27 E-value=95 Score=24.00 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=37.9
Q ss_pred ecCCHHHHHH--HHHHHhCCceEEEEecCCCCC--hHHHHHHHHhh--cCCceEEEcc-chHHHhchh
Q psy2575 58 LGYSKIVELF--LKNAAQHRKFQCIVMENSPEN--KGHELAVSLAK--SKIQTVLIPD-SAMFGLISR 118 (165)
Q Consensus 58 ~g~S~tV~~~--L~~A~~~~~f~ViV~Es~P~~--eG~~la~~L~~--~GI~v~~I~d-sav~~~m~~ 118 (165)
..+......+ +..++++++ -++++...|.. -|..+.+.|.+ .|++++++|- |++.+++.+
T Consensus 58 ~~~~~~~~~i~~~~~~~~g~~-V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~ 124 (210)
T PF00590_consen 58 ESYDEIAEIIEAIEAAKEGKD-VVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAAR 124 (210)
T ss_dssp HHHHHHHHHHHHHHHHHTTSE-EEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhccCC-EEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHH
Confidence 3444444433 444444555 45556888875 45688999999 9999999994 666666544
No 342
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=50.24 E-value=1e+02 Score=25.37 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=41.3
Q ss_pred hcccCCCCEEEEecCCHHHHHHHHHHHh----CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHh
Q psy2575 46 CEHIHSNEIILTLGYSKIVELFLKNAAQ----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGL 115 (165)
Q Consensus 46 ~~~I~~~~~ILT~g~S~tV~~~L~~A~~----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~ 115 (165)
.+.+.+...+..--.+.+.+..+..|++ ..++-|=|.=+ .+|.+.++.|++.||+|.....-++...
T Consensus 47 ~~~~~~~~~v~~qv~~~d~e~mi~eA~~l~~~~~nv~IKIP~T---~~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa 117 (220)
T PRK12655 47 QKAIGGEGILFAQTMSRDAQGMVEEAKRLRNAIPGIVVKIPVT---AEGLAAIKKLKKEGIPTLGTAVYSAAQG 117 (220)
T ss_pred HHHhCCCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHCCCceeEeEecCHHHH
Confidence 3345433334433345567888888887 34433323322 2899999999999999886665444433
No 343
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=50.21 E-value=1.5e+02 Score=24.69 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=61.5
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceE--EEEecCC--C-------CChHHHHHHHHhhcCCceEEEccc-----------
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQ--CIVMENS--P-------ENKGHELAVSLAKSKIQTVLIPDS----------- 110 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~--ViV~Es~--P-------~~eG~~la~~L~~~GI~v~~I~ds----------- 110 (165)
..|++||.++.+...+.......++. +-++... + ..-...++..|++.|++..-++-.
T Consensus 48 ~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~ 127 (279)
T cd04250 48 NPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEIVEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKD 127 (279)
T ss_pred CEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEEECc
Confidence 58999999998877776543322111 1111110 0 122345688899999876655532
Q ss_pred ----------------------hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 111 ----------------------AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 111 ----------------------av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.+..++..-...++..-++-++|...+--+=...+.+|+..+-.-+++
T Consensus 128 ~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ 197 (279)
T cd04250 128 ATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLIL 197 (279)
T ss_pred ccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEE
Confidence 122233333456666544556777776667777778899888665544
No 344
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=50.21 E-value=1.8e+02 Score=25.76 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=29.9
Q ss_pred ChHHHHHHHH----hhcCCce-EEEccchHHHhc-hhCCEEEEccceee
Q psy2575 88 NKGHELAVSL----AKSKIQT-VLIPDSAMFGLI-SRVNKIIIGTHTVM 130 (165)
Q Consensus 88 ~eG~~la~~L----~~~GI~v-~~I~dsav~~~m-~~v~~VllGAd~V~ 130 (165)
.+|..++++| .+.|+|+ +-+.|.....++ .-+|..-+||..+-
T Consensus 120 ~~GL~~~R~ll~~~~e~GlpvatE~ld~~~~~y~~dlvs~~~IGARt~e 168 (349)
T PRK09261 120 NDGLRIARKLLLDINELGLPAATEFLDPITPQYIADLISWGAIGARTTE 168 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecccccHHHHHhhcceeeeccchhc
Confidence 4678887777 7789884 455555555554 44899999997753
No 345
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.19 E-value=1.1e+02 Score=25.49 Aligned_cols=57 Identities=7% Similarity=0.030 Sum_probs=33.6
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEE
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLI 107 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I 107 (165)
++.++++.|-|+-+=..+....-.+..+|++.+.++......++..+.+.|-++.++
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~ 67 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAV 67 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEE
Confidence 467888888776553333322222445788876554434456777787777655544
No 346
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=50.15 E-value=18 Score=29.18 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHhCCceEEEEecCCCCCh
Q psy2575 61 SKIVELFLKNAAQHRKFQCIVMENSPENK 89 (165)
Q Consensus 61 S~tV~~~L~~A~~~~~f~ViV~Es~P~~e 89 (165)
|+...+.|..+++ +..+++++=+||...
T Consensus 22 ~~~~~~ai~~~~~-~G~~~~iaTGR~~~~ 49 (272)
T PRK10530 22 LPESLEALARARE-AGYKVIIVTGRHHVA 49 (272)
T ss_pred CHHHHHHHHHHHH-CCCEEEEEcCCChHH
Confidence 4434555665554 456777777777654
No 347
>PRK12743 oxidoreductase; Provisional
Probab=50.12 E-value=75 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=10.7
Q ss_pred eEEEEecCCCCChHHHHHHHHhhcC
Q psy2575 77 FQCIVMENSPENKGHELAVSLAKSK 101 (165)
Q Consensus 77 f~ViV~Es~P~~eG~~la~~L~~~G 101 (165)
.+|+++..++......+...+...|
T Consensus 27 ~~V~~~~~~~~~~~~~~~~~~~~~~ 51 (256)
T PRK12743 27 FDIGITWHSDEEGAKETAEEVRSHG 51 (256)
T ss_pred CEEEEEeCCChHHHHHHHHHHHhcC
Confidence 4454444443333334444444444
No 348
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.08 E-value=69 Score=26.02 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=51.5
Q ss_pred EecCCCCChHHHHHHHHhhcCCceEEEccc---hHHHh---chhCCEEEEccceeec-----------CCCeeehhcHHH
Q psy2575 81 VMENSPENKGHELAVSLAKSKIQTVLIPDS---AMFGL---ISRVNKIIIGTHTVMA-----------NGGLRSVCGTHA 143 (165)
Q Consensus 81 V~Es~P~~eG~~la~~L~~~GI~v~~I~ds---av~~~---m~~v~~VllGAd~V~~-----------nG~vvnk~GT~~ 143 (165)
|+-..+..+...+++.|.+.|+++.-|+.+ +...+ -++.+.+++||=+|+. -..+++..-.-.
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~ 88 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQE 88 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHH
Confidence 444445566778899999998766555533 33222 2346678899877764 124667777778
Q ss_pred HHHHHhhCCCcEE
Q psy2575 144 VALAAQHYSIPYP 156 (165)
Q Consensus 144 lAl~Ak~~~vPv~ 156 (165)
+.-.|+++++|++
T Consensus 89 vi~~a~~~~i~~i 101 (201)
T PRK06015 89 LLAAANDSDVPLL 101 (201)
T ss_pred HHHHHHHcCCCEe
Confidence 8888999999987
No 349
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=50.08 E-value=44 Score=24.23 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=35.1
Q ss_pred HHHhhcCCceEE--EccchHHHhc--hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 95 VSLAKSKIQTVL--IPDSAMFGLI--SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 95 ~~L~~~GI~v~~--I~dsav~~~m--~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
+.+.+.|+++++ .+.+.+...+ .++|.+++|.+.-+.- -.+--.+..+++||.++-+
T Consensus 23 ~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~---------~~i~~~~~~~~ipv~~I~~ 83 (104)
T PRK09590 23 EYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYF---------KQFEEAGAKVGKPVVQIPP 83 (104)
T ss_pred HHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHH---------HHHHHHhhhcCCCEEEeCH
Confidence 344557776665 4444454443 3689999998774321 1233455678999988644
No 350
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=50.07 E-value=1.7e+02 Score=25.25 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=58.4
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc--------
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD-------- 109 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d-------- 109 (165)
.++.-+..++++.-...++|-|.+......+.... ++.-+|++. ++..-+... .+...|+++..++.
T Consensus 65 ~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~-~~gd~Vlv~--~~~h~s~~~--~~~~~G~~~~~v~~~~~~~~~~ 139 (387)
T PRK09331 65 IADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLC-KKGDYVVLD--GLAHYTSYV--AAERAGLNVREVPKTGYPEYKI 139 (387)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc-CCCCEEEEC--CCchHHHHH--HHHHcCCEEEEEeCccCcCCCc
Confidence 34444445556665566766555544444554443 344566664 343333322 24567888887763
Q ss_pred --chHHHhch--------hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 110 --SAMFGLIS--------RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 110 --sav~~~m~--------~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
..+...+. +...|++. ..-.+.|. +.. -..++-+|+++++|++|=
T Consensus 140 d~~~l~~~l~~~~~~~~~~~~lV~l~-~~~~~tG~-~~~--l~~I~~la~~~g~~livD 194 (387)
T PRK09331 140 TPEAYAEKIEEVKEETGKPPALALLT-HVDGNYGN-LAD--AKKVAKVAHEYGIPFLLN 194 (387)
T ss_pred CHHHHHHHHHHhhhccCCCCEEEEEE-CCCCCCcc-ccc--HHHHHHHHHHcCCEEEEE
Confidence 22223332 34444442 11112332 222 335888999999999873
No 351
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=50.05 E-value=74 Score=25.30 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=29.8
Q ss_pred EEEEecCCCCC--hHHHHHHHHhhcCCceEEEc-cchHHHhchh
Q psy2575 78 QCIVMENSPEN--KGHELAVSLAKSKIQTVLIP-DSAMFGLISR 118 (165)
Q Consensus 78 ~ViV~Es~P~~--eG~~la~~L~~~GI~v~~I~-dsav~~~m~~ 118 (165)
-+++....|.. -|..+.+.+.+.|+++++|| -|++.+++.+
T Consensus 74 V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~ 117 (229)
T TIGR01465 74 VVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAA 117 (229)
T ss_pred EEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHH
Confidence 45556788864 46778889999999999999 4555555443
No 352
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=49.98 E-value=1.3e+02 Score=23.89 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceE
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTV 105 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~ 105 (165)
.+.++++.|.++-+=..+......+..+|+++...+. +...+...+.+.+.++.
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~-~~~~~~~~i~~~~~~~~ 64 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAE-ELEEAAAHLEALGIDAL 64 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCCeEE
Confidence 3567888877665533332222223457777765432 22344455555554443
No 353
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=49.78 E-value=1.7e+02 Score=25.14 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=60.5
Q ss_pred HHHHHHHHhcccCC---CCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHH-HHHHhh----------cCC
Q psy2575 38 SDTAPSQACEHIHS---NEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHEL-AVSLAK----------SKI 102 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~---~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~l-a~~L~~----------~GI 102 (165)
..++++...++... ..+++|.|.+..++..++-+.. ++ -+++..|. .+.|... +..+.. .+.
T Consensus 87 ~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~-~~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~ 163 (398)
T PRK03244 87 QIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGR-TKIVAAEG--GFHGRTMGALALTGQPAKRAPFEPLPG 163 (398)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCC-CeEEEECC--CcCCccHHHHhccCCcccccCCCCCCC
Confidence 44555555555432 3677777888888888776655 43 35666653 3333322 111111 122
Q ss_pred ceEEEc--c-chHHHhc-hhCCEEEEccceeec-CCCeeehhc-HHHHHHHHhhCCCcEEE
Q psy2575 103 QTVLIP--D-SAMFGLI-SRVNKIIIGTHTVMA-NGGLRSVCG-THAVALAAQHYSIPYPC 157 (165)
Q Consensus 103 ~v~~I~--d-sav~~~m-~~v~~VllGAd~V~~-nG~vvnk~G-T~~lAl~Ak~~~vPv~V 157 (165)
++..++ | ..+-..+ +++..|++ +.+.. .|.+....+ -..+.-+|++|++++++
T Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~avii--ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 222 (398)
T PRK03244 164 GVEHVPYGDVDALAAAVDDDTAAVFL--EPIQGEAGVVPPPAGYLAAAREITDRHGALLVL 222 (398)
T ss_pred CceEeCCCCHHHHHHhhcCCeEEEEE--ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344443 2 2233333 23444555 33433 344444545 45677889999998875
No 354
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=49.77 E-value=68 Score=26.71 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=46.6
Q ss_pred chhhHHHhhhhccCCccccCChHHHHHHHHHHhcccCCCCEEEEecCCH----HHHHHHHHHHhCCceEEEEecCCCCCh
Q psy2575 14 NYQESLHKLVVSSDDEATDFANPTSDTAPSQACEHIHSNEIILTLGYSK----IVELFLKNAAQHRKFQCIVMENSPENK 89 (165)
Q Consensus 14 ~~~~sL~~~~~~~~~~~~d~~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~----tV~~~L~~A~~~~~f~ViV~Es~P~~e 89 (165)
-+.+.+-+.+.+... .--.+...-+.+.+.-.++..+++.|+.+.-|+ |...+...+.+-..++|+|.||+-..-
T Consensus 41 i~~~~~y~~~~~~~~-~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~ 119 (275)
T TIGR00762 41 ITPEEFYEKLKESKE-LPKTSQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASM 119 (275)
T ss_pred CCHHHHHHHHHhcCC-CCCcCCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHH
Confidence 346666666652111 101122223444444445556676677665444 444443333222345899999998754
Q ss_pred HHHH----HHHHhhcCCc
Q psy2575 90 GHEL----AVSLAKSKIQ 103 (165)
Q Consensus 90 G~~l----a~~L~~~GI~ 103 (165)
|.-+ |.++.+.|.+
T Consensus 120 ~~g~~v~~a~~~~~~G~s 137 (275)
T TIGR00762 120 GLGLLVLEAAKLAEEGKS 137 (275)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 4322 7777778864
No 355
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=49.76 E-value=1.8e+02 Score=25.43 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=51.6
Q ss_pred EEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhh-cCCceEEEccch---HHHh-chhCCEEEEccce
Q psy2575 54 IILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAK-SKIQTVLIPDSA---MFGL-ISRVNKIIIGTHT 128 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~-~GI~v~~I~dsa---v~~~-m~~v~~VllGAd~ 128 (165)
.|+..|++..-..+.....+ ....|++++..|. .++.+++ .|+++.+..... +... +.++|.|++..+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~-~g~~v~vid~~~~-----~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG-ENNDVTVIDTDEE-----RLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEECCHH-----HHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 47778988766666665544 4467777776554 3455554 566666542211 1222 5567777776542
Q ss_pred eecCCCeeehhcHHHHHHHHhhC-CCcEEE
Q psy2575 129 VMANGGLRSVCGTHAVALAAQHY-SIPYPC 157 (165)
Q Consensus 129 V~~nG~vvnk~GT~~lAl~Ak~~-~vPv~V 157 (165)
..-...++..||.+ +.+-++
T Consensus 76 ---------~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 76 ---------DETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred ---------hHHHHHHHHHHHHhcCCCeEE
Confidence 22345577888886 544333
No 356
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=49.72 E-value=1.2e+02 Score=23.32 Aligned_cols=107 Identities=15% Similarity=0.215 Sum_probs=58.7
Q ss_pred EEEecCCHHHHHHHHHHHhCCceEEEEecCC--CCChHHHHHHHHhhcCCceEEEc-c----chHHHhc-------hhCC
Q psy2575 55 ILTLGYSKIVELFLKNAAQHRKFQCIVMENS--PENKGHELAVSLAKSKIQTVLIP-D----SAMFGLI-------SRVN 120 (165)
Q Consensus 55 ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~--P~~eG~~la~~L~~~GI~v~~I~-d----sav~~~m-------~~v~ 120 (165)
++|=|.+..-..+.+...+.-.-+++++-.+ |..+..++.++|++.|..+.+.. | .++..++ +.++
T Consensus 4 litGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i~ 83 (181)
T PF08659_consen 4 LITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGPID 83 (181)
T ss_dssp EEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-EE
T ss_pred EEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCCcc
Confidence 3333444433444444444334466666555 45566788999999999999886 3 2333333 2455
Q ss_pred EEEEccceeecCCCeee-------------hhcHHHHHHHHhhCCCcEEEEeecc
Q psy2575 121 KIIIGTHTVMANGGLRS-------------VCGTHAVALAAQHYSIPYPCTFLLN 162 (165)
Q Consensus 121 ~VllGAd~V~~nG~vvn-------------k~GT~~lAl~Ak~~~vPv~V~~~~~ 162 (165)
-||-.| .+..++.+.+ -.|+..+.-+....+..+++++.+-
T Consensus 84 gVih~a-g~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSi 137 (181)
T PF08659_consen 84 GVIHAA-GVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSI 137 (181)
T ss_dssp EEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEH
T ss_pred eeeeee-eeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECCh
Confidence 666665 4455666666 3467777777777888888887653
No 357
>PRK07179 hypothetical protein; Provisional
Probab=49.64 E-value=1.7e+02 Score=25.24 Aligned_cols=113 Identities=11% Similarity=-0.002 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc---cchHH
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP---DSAMF 113 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~---dsav~ 113 (165)
....+.+..++++.....++|-|.+......|..... ..-+|++. .+.... +...+...|.++.... ...+.
T Consensus 100 ~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~-~g~~v~~~--~~~h~s--~~~~~~~~g~~~~~~~~~d~~~l~ 174 (407)
T PRK07179 100 PKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIAD-PNTPVYID--FFAHMS--LWEGVRAAGAQAHPFRHNDVDHLR 174 (407)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCC-CCCEEEEE--CCcCHH--HHHHHHHCCCeEEEecCCCHHHHH
Confidence 4455555556666655677766666555555554433 33456653 222221 2233344576655442 23444
Q ss_pred HhchhC-CEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 114 GLISRV-NKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 114 ~~m~~v-~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..+.+- .++++ .+.+....|.+... ..++-+|+++++++++
T Consensus 175 ~~l~~~~~~lV~-v~~v~n~tG~i~pl--~~I~~l~~~~~~~liv 216 (407)
T PRK07179 175 RQIERHGPGIIV-VDSVYSTTGTIAPL--ADIVDIAEEFGCVLVV 216 (407)
T ss_pred HHHHhcCCeEEE-ECCCCCCCCccccH--HHHHHHHHHcCCEEEE
Confidence 455432 23222 34555444555553 4678889999988775
No 358
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=49.61 E-value=1.3e+02 Score=23.90 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=30.3
Q ss_pred EEEEecCCCCC--hHHHHHHHHhhcCCceEEEc-cchHHHhchh
Q psy2575 78 QCIVMENSPEN--KGHELAVSLAKSKIQTVLIP-DSAMFGLISR 118 (165)
Q Consensus 78 ~ViV~Es~P~~--eG~~la~~L~~~GI~v~~I~-dsav~~~m~~ 118 (165)
-+++....|.. -+..+.+.+.+.|++++.|| -|++.+++.+
T Consensus 80 V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~ 123 (236)
T TIGR01469 80 VVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAY 123 (236)
T ss_pred EEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHH
Confidence 34467788875 46678899999999999999 5555655544
No 359
>PRK09191 two-component response regulator; Provisional
Probab=49.59 E-value=1.3e+02 Score=23.75 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=53.5
Q ss_pred HHHHHHHHHHh----CCceEEEEecCCCCChHHHHHHHHhhcCCceEE-Eccch--HHHhc-hhCCEEEEccceeecCCC
Q psy2575 63 IVELFLKNAAQ----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVL-IPDSA--MFGLI-SRVNKIIIGTHTVMANGG 134 (165)
Q Consensus 63 tV~~~L~~A~~----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~-I~dsa--v~~~m-~~v~~VllGAd~V~~nG~ 134 (165)
||..-+.+|.+ ....++++++..|... ..+...|+..|+.+.- ..+.. ...+. ...|.|++..+ +++|
T Consensus 120 tV~~~l~ra~~~l~~~~~~~~liidd~~~~~-~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~~- 195 (261)
T PRK09191 120 EAEALLDDARAEIARQVATRVLIIEDEPIIA-MDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LADG- 195 (261)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEcCcHHHH-HHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCCC-
Confidence 77777777776 3455788888765532 3467778888988773 33322 22222 23788887654 2221
Q ss_pred eeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 135 LRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 135 vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
.-|.-.+..+.+..++|+++++..
T Consensus 196 ---~~g~e~l~~l~~~~~~pii~ls~~ 219 (261)
T PRK09191 196 ---SSGIDAVNDILKTFDVPVIFITAF 219 (261)
T ss_pred ---CCHHHHHHHHHHhCCCCEEEEeCC
Confidence 113333334444448999988653
No 360
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=49.58 E-value=1.7e+02 Score=25.28 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHh----CCceEEEEecCCCCChHHHH-HH---HHhhcCC
Q psy2575 35 NPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQ----HRKFQCIVMENSPENKGHEL-AV---SLAKSKI 102 (165)
Q Consensus 35 ~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~----~~~f~ViV~Es~P~~eG~~l-a~---~L~~~GI 102 (165)
...++.|+++-.. .+....+++|.|.+..+..++..... +..-+|++.++ |.+.+... ++ .+...+.
T Consensus 77 ~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~-P~y~~y~~~~~~~~~~~~~~~ 155 (416)
T PRK09440 77 DELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLA-PEYIGYADAGLEEDLFVSYRP 155 (416)
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecC-CCchhhHHHhhccCceeeccc
Confidence 5678899987654 26666788888877655444432222 12346666332 33333222 11 1222222
Q ss_pred ceEEEccc------hHHHh--chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 103 QTVLIPDS------AMFGL--ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 103 ~v~~I~ds------av~~~--m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+..+.+. -...+ -+++..+++-.-. -+-|.++..---..++-.|+++++++++
T Consensus 156 ~~~~~~~~~~~~~~d~~~l~~~~~~~~i~l~~P~-NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 217 (416)
T PRK09440 156 NIELLPEGQFKYHVDFEHLHIDEDTGAICVSRPT-NPTGNVLTDEELEKLDALARQHNIPLLI 217 (416)
T ss_pred ccccccccccccCCCHHHcccCCCceEEEEecCC-CCCCccCCHHHHHHHHHHHHHcCCcEEE
Confidence 22212111 01111 1234444443222 5566666666667888889999988764
No 361
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=49.53 E-value=49 Score=22.23 Aligned_cols=61 Identities=20% Similarity=0.083 Sum_probs=30.9
Q ss_pred HHHHHhhcCC-ceEEEccchHHH-hch--hCCEEEEccceeecCCCeeehhcHHHHHHHHhh-CCCcEEEEee
Q psy2575 93 LAVSLAKSKI-QTVLIPDSAMFG-LIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQH-YSIPYPCTFL 160 (165)
Q Consensus 93 la~~L~~~GI-~v~~I~dsav~~-~m~--~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~-~~vPv~V~~~ 160 (165)
+.+.|...|+ .|....+..-.. .+. ..|.+++.. ..-...|-..+..+.+. .++|+++++.
T Consensus 14 l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~-------~~~~~~~~~~~~~i~~~~~~~~ii~~t~ 79 (112)
T PF00072_consen 14 LEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDL-------ELPDGDGLELLEQIRQINPSIPIIVVTD 79 (112)
T ss_dssp HHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEES-------SSSSSBHHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEe-------eeccccccccccccccccccccEEEecC
Confidence 3445555666 555555433222 222 255666553 22233455555555444 4788888774
No 362
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=49.36 E-value=1.3e+02 Score=23.87 Aligned_cols=70 Identities=17% Similarity=0.343 Sum_probs=40.6
Q ss_pred EEEEecCCHHHHHHHHHHHhC-CceEEE-EecCCCCChHHHHHHHHhhcCCceEEEc----------cchHHHhch--hC
Q psy2575 54 IILTLGYSKIVELFLKNAAQH-RKFQCI-VMENSPENKGHELAVSLAKSKIQTVLIP----------DSAMFGLIS--RV 119 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~-~~f~Vi-V~Es~P~~eG~~la~~L~~~GI~v~~I~----------dsav~~~m~--~v 119 (165)
.||.-|.++..+.++....++ ...+|. |+-.+|..++. ....+.|||+..+. +..+...++ ++
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~---~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL---ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHH---HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 355556677777677666553 334544 34455665543 34456799988765 223444454 48
Q ss_pred CEEEEcc
Q psy2575 120 NKIIIGT 126 (165)
Q Consensus 120 ~~VllGA 126 (165)
|.+++-.
T Consensus 81 D~iv~~~ 87 (190)
T TIGR00639 81 DLVVLAG 87 (190)
T ss_pred CEEEEeC
Confidence 8877643
No 363
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=49.21 E-value=38 Score=26.43 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=41.6
Q ss_pred EEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 79 CIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 79 ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
|++.+..|. +..+.|++.|+++..+.+.. -+.++|.++++--.-..........+....-.-+-+.++|++-+
T Consensus 3 vl~~qg~~~----e~~~~l~~~g~~v~~v~~~~---~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGi 75 (183)
T cd01749 3 VLALQGDFR----EHIRALERLGVEVIEVRTPE---DLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGT 75 (183)
T ss_pred EEEecCCcH----HHHHHHHHCCCeEEEECCHH---HhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEE
Confidence 445555543 33488999999999998843 25678877776311100001112233333333344568999977
Q ss_pred e
Q psy2575 159 F 159 (165)
Q Consensus 159 ~ 159 (165)
|
T Consensus 76 C 76 (183)
T cd01749 76 C 76 (183)
T ss_pred C
Confidence 6
No 364
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=49.20 E-value=50 Score=27.02 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=22.2
Q ss_pred ccCCCCEEEEecCCH---HHHHHHHHHHhCCceEEEEecCCCC
Q psy2575 48 HIHSNEIILTLGYSK---IVELFLKNAAQHRKFQCIVMENSPE 87 (165)
Q Consensus 48 ~I~~~~~ILT~g~S~---tV~~~L~~A~~~~~f~ViV~Es~P~ 87 (165)
.|.++|+++-+|+|- .+...+..+++ ..-+++.+-+.|.
T Consensus 83 ~i~~~DvviaiS~SGeT~el~~~~~~aK~-~g~~liaiT~~~~ 124 (202)
T COG0794 83 MITPGDVVIAISGSGETKELLNLAPKAKR-LGAKLIAITSNPD 124 (202)
T ss_pred CCCCCCEEEEEeCCCcHHHHHHHHHHHHH-cCCcEEEEeCCCC
Confidence 556788888888774 33334443332 4455555555554
No 365
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=49.13 E-value=1e+02 Score=22.37 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCceEEEccchHHH---hchhCCEEEEccceeecCCCee
Q psy2575 92 ELAVSLAKSKIQTVLIPDSAMFG---LISRVNKIIIGTHTVMANGGLR 136 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~dsav~~---~m~~v~~VllGAd~V~~nG~vv 136 (165)
.+++.|.+.|+++.++....... -+.+.+.+++|+.+.. +|..-
T Consensus 16 ~ia~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~sT~~-~g~~p 62 (143)
T PF00258_consen 16 AIAEGLRERGVEVRVVDLDDFDDSPSDLSEYDLLIFGVSTYG-EGEPP 62 (143)
T ss_dssp HHHHHHHHTTSEEEEEEGGGSCHHHHHHCTTSEEEEEEEEET-TTEES
T ss_pred HHHHHHHHcCCceeeechhhhhhhhhhhhhhceeeEeecccC-CCcch
Confidence 45777778999988888766654 4778899999987643 44444
No 366
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=49.06 E-value=49 Score=25.60 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcccCCCCEEEEe---cCCHHHH
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTL---GYSKIVE 65 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~---g~S~tV~ 65 (165)
...+.|.++..+.+++|++||.| .++.|++
T Consensus 136 ~~~~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~ 168 (191)
T TIGR02764 136 PGVESIVDRVVKNTKPGDIILLHASDSAKQTVK 168 (191)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeCCCCcHhHHH
Confidence 34567888888889999999999 3444543
No 367
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=49.01 E-value=26 Score=24.05 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=24.9
Q ss_pred hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 118 RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 118 ~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
++|.+++|++.--.-.. ..-....--++++.++||+|+
T Consensus 102 ~~dliv~G~~~~~~~~~---~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 102 NADLIVMGSRGRSGLER---LLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TCSEEEEESSSTTSTTT---SSSHHHHHHHHHHTSSEEEEE
T ss_pred cceeEEEeccCCCCccC---CCcCCHHHHHHHcCCCCEEEe
Confidence 59999999988322222 223334456667888999985
No 368
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=49.00 E-value=1.2e+02 Score=23.23 Aligned_cols=88 Identities=15% Similarity=0.071 Sum_probs=46.4
Q ss_pred CCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcccee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTV 129 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V 129 (165)
.|..|+..|.++.-.+-.....+ +...+|+ .|.. ..+|.+.+ .+++....--..-+..+|.|+...+-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI----sp~~-----~~~l~~l~-~i~~~~~~~~~~dl~~a~lViaaT~d- 80 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV----SPEI-----CKEMKELP-YITWKQKTFSNDDIKDAHLIYAATNQ- 80 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE----cCcc-----CHHHHhcc-CcEEEecccChhcCCCceEEEECCCC-
Confidence 57889999999876655554443 4444444 2432 12222222 23333322222335566777665432
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
.-+| ..++..|+++ .||.++
T Consensus 81 ----~e~N----~~i~~~a~~~-~~vn~~ 100 (157)
T PRK06719 81 ----HAVN----MMVKQAAHDF-QWVNVV 100 (157)
T ss_pred ----HHHH----HHHHHHHHHC-CcEEEC
Confidence 2222 5677788774 577754
No 369
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=48.72 E-value=62 Score=26.94 Aligned_cols=89 Identities=18% Similarity=0.082 Sum_probs=52.5
Q ss_pred EEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCC---hHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcccee-
Q psy2575 54 IILTLGYSKIVELFLKNAAQHRKFQCIVMENSPEN---KGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTV- 129 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~---eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V- 129 (165)
+||..|.|..+=..|.++.+.+.++|+.+ +|+.. .-..+.+.+.+.. -|.|+--|-..
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~~~dl~d~~~~~~~~~~~~-----------------pd~Vin~aa~~~ 63 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIAT-SRSDLDLTDPEAVAKLLEAFK-----------------PDVVINCAAYTN 63 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STTCS-TTSHHHHHHHHHHH-------------------SEEEE------
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEe-CchhcCCCCHHHHHHHHHHhC-----------------CCeEeccceeec
Confidence 68888988888777777766677888877 44422 1123333333333 34444332110
Q ss_pred -------ecCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 130 -------MANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 130 -------~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
-..-..+|-.|+..+|-+|+.++.|++-++.
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ST 101 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERGARLIHIST 101 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence 0012357789999999999999999887653
No 370
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=48.70 E-value=64 Score=28.33 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=30.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc
Q psy2575 76 KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI 116 (165)
Q Consensus 76 ~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m 116 (165)
.++|.|+| ||+.+ ++.+++++.|..+.+|+|.-+...+
T Consensus 156 dltV~vLd-RpRH~--~lI~eir~~Gari~Li~DGDV~~ai 193 (322)
T PRK12415 156 DLTVIVQE-RERHQ--DIIDRVRAKGARVKLFGDGDVGASI 193 (322)
T ss_pred HeEEEEEc-CchHH--HHHHHHHHcCCeEEEeccccHHHHH
Confidence 46666664 77764 7899999999999999997775544
No 371
>smart00594 UAS UAS domain.
Probab=48.65 E-value=1e+02 Score=22.27 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHH
Q psy2575 64 VELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHA 143 (165)
Q Consensus 64 V~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~ 143 (165)
.+..+..|++..++-++...+.-......+.+. +.++..+..++.+ +.|+++.|.=..+| ..
T Consensus 16 ~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~---------vl~~~~V~~~i~~-~fv~~~~dv~~~eg--------~~ 77 (122)
T smart00594 16 LEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRD---------VLCNEAVKSLIRE-NFIFWQVDVDTSEG--------QR 77 (122)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHH---------HccCHHHHHHHHc-CEEEEEecCCChhH--------HH
Confidence 566777777644444333333222344555554 3566678888877 78888888655554 33
Q ss_pred HHHHHhhCCCcEEEEee
Q psy2575 144 VALAAQHYSIPYPCTFL 160 (165)
Q Consensus 144 lAl~Ak~~~vPv~V~~~ 160 (165)
++..=+..+.|.+++-.
T Consensus 78 l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 78 VSQFYKLDSFPYVAIVD 94 (122)
T ss_pred HHHhcCcCCCCEEEEEe
Confidence 33333345678887653
No 372
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=48.55 E-value=63 Score=23.75 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=5.5
Q ss_pred CCCEEEEecCCH
Q psy2575 51 SNEIILTLGYSK 62 (165)
Q Consensus 51 ~~~~ILT~g~S~ 62 (165)
+-++|++-..|+
T Consensus 26 ~~eiivvdd~s~ 37 (182)
T cd06420 26 PFEVIIADDGST 37 (182)
T ss_pred CCEEEEEeCCCc
Confidence 334555544443
No 373
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=48.40 E-value=1.2e+02 Score=23.29 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=41.1
Q ss_pred CCCEEEEec--CCHHHHHHHHHHHh-CCceEEEEecC--CCCC-hHHHHH-HHHhhcCCceEEEccchHHHhchhCCEEE
Q psy2575 51 SNEIILTLG--YSKIVELFLKNAAQ-HRKFQCIVMEN--SPEN-KGHELA-VSLAKSKIQTVLIPDSAMFGLISRVNKII 123 (165)
Q Consensus 51 ~~~~ILT~g--~S~tV~~~L~~A~~-~~~f~ViV~Es--~P~~-eG~~la-~~L~~~GI~v~~I~dsav~~~m~~v~~Vl 123 (165)
+|-+|.-.| +++++..++.-+.+ +..+.++..+. -|.. +-...+ +...+.|-++++. ..+...++.+|.|.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--~~~~e~l~~aDvvy 78 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT--DDIEEALKGADVVY 78 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE--SSHHHHHTT-SEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE--eCHHHhcCCCCEEE
Confidence 355677777 57777777766666 65566555554 2221 112222 3334457777777 34777788777665
Q ss_pred E
Q psy2575 124 I 124 (165)
Q Consensus 124 l 124 (165)
.
T Consensus 79 ~ 79 (158)
T PF00185_consen 79 T 79 (158)
T ss_dssp E
T ss_pred E
Confidence 4
No 374
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=48.39 E-value=55 Score=28.35 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=21.9
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCC
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSP 86 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P 86 (165)
.|..|.++|+|.+|=+-|.....++.-+|.++.|+.
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T 201 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT 201 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence 366777777777765544444444556677776654
No 375
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=48.34 E-value=1.4e+02 Score=23.72 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=61.2
Q ss_pred HHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCC------------------ChHHHHHHHHhhc--CC
Q psy2575 44 QACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPE------------------NKGHELAVSLAKS--KI 102 (165)
Q Consensus 44 ~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~------------------~eG~~la~~L~~~--GI 102 (165)
.+.+.++ +.+|+..|.+..=..+...... |-. ++.+.|.... ..-..++++|++. .+
T Consensus 14 ~~q~kl~-~~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v 91 (202)
T TIGR02356 14 EGQQRLL-NSHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDI 91 (202)
T ss_pred HHHHHhc-CCCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCC
Confidence 3344444 4577788877655556665555 421 3444443210 1113346677664 35
Q ss_pred ceEEEcc----chHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 103 QTVLIPD----SAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 103 ~v~~I~d----sav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+++.++. ..+..+++++|.|+...|..- --..+...|+.+++|++...
T Consensus 92 ~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 92 QVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred EEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 5554442 234556788998888766531 23457788999999998765
No 376
>PLN02368 alanine transaminase
Probab=48.31 E-value=1.9e+02 Score=25.48 Aligned_cols=116 Identities=14% Similarity=0.007 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhcc----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 35 NPTSDTAPSQACEH----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
...++.|+++-.+. +...++++|.|.+..+..++.....+..-+|++.+ |.+.+... .+...|.++..++..
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~--P~Y~~y~~--~~~~~g~~~v~v~~~ 185 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPV--PQYPLYSA--TISLLGGTLVPYYLE 185 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeC--CCCccHHH--HHHHcCCEEEEEecc
Confidence 46788999877543 55667888888776665555544323445666663 66554433 234456555555421
Q ss_pred ----------hHHHhch-------hCCEEEE-ccceeecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 111 ----------AMFGLIS-------RVNKIII-GTHTVMANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 111 ----------av~~~m~-------~v~~Vll-GAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
.+-..+. ++..+++ -.+ -+-|.++.+-=-..++-.|+++++.++
T Consensus 186 ~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~--NPTG~v~s~e~l~~l~~~a~~~~~~II 247 (407)
T PLN02368 186 ESENWGLDVNNLRQSVAQARSKGITVRAMVIINPG--NPTGQCLSEANLREILKFCYQERLVLL 247 (407)
T ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCC--CCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 1112222 2222333 221 245666666555677778888887665
No 377
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=48.29 E-value=11 Score=25.59 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=18.9
Q ss_pred eecCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 129 VMANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 129 V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
|+..|+.. .-.|++||++++|.++-+.
T Consensus 35 v~~~Gg~~-----SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 35 VTEEGGPT-----SHAAILARELGIPAIVGVG 61 (80)
T ss_dssp EESSSSTT-----SHHHHHHHHTT-EEEESTT
T ss_pred EEEcCCcc-----chHHHHHHHcCCCEEEeec
Confidence 34455543 4579999999999998764
No 378
>PRK14012 cysteine desulfurase; Provisional
Probab=48.18 E-value=1.8e+02 Score=25.07 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=55.9
Q ss_pred HhcccCC--CCEEEEecCCHHHHHHHHHHH---hCCceEEEEecCCCCChH-HHHHHHHhhcCCceEEEccc--------
Q psy2575 45 ACEHIHS--NEIILTLGYSKIVELFLKNAA---QHRKFQCIVMENSPENKG-HELAVSLAKSKIQTVLIPDS-------- 110 (165)
Q Consensus 45 a~~~I~~--~~~ILT~g~S~tV~~~L~~A~---~~~~f~ViV~Es~P~~eG-~~la~~L~~~GI~v~~I~ds-------- 110 (165)
.++++.- .++++|-|.+..+...+.... .++.-+|++.+ +.+.+ ...++.+...|+++..++..
T Consensus 58 ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~--~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~ 135 (404)
T PRK14012 58 IADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSK--TEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLE 135 (404)
T ss_pred HHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEec--CccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHH
Confidence 3445542 346666555544444443332 13334566653 33322 22355566679888877432
Q ss_pred hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 111 AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 111 av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.+...+..-+++++-...=...| .+..+ ..|+-+|+++++++++=+
T Consensus 136 ~l~~~i~~~t~lv~~~~~~n~tG-~~~~~--~~I~~la~~~g~~vivD~ 181 (404)
T PRK14012 136 KLEAAMRDDTILVSIMHVNNEIG-VIQDI--AAIGEICRERGIIFHVDA 181 (404)
T ss_pred HHHHhcCCCCEEEEEECcCCCcc-chhhH--HHHHHHHHHcCCEEEEEc
Confidence 22233333234443332222333 33333 468888999999988743
No 379
>PRK15482 transcriptional regulator MurR; Provisional
Probab=48.06 E-value=1.6e+02 Score=24.36 Aligned_cols=64 Identities=17% Similarity=0.068 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCceEEEccchHHHh----chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMFGL----ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~~~----m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
..+...|...|.+|.+..|...... +++=|.+|+-+. .| ...=+..++-.|+..+.|++.++..
T Consensus 151 ~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~----sg---~t~~~~~~~~~a~~~g~~iI~IT~~ 218 (285)
T PRK15482 151 RDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISY----SG---SKKEIVLCAEAARKQGATVIAITSL 218 (285)
T ss_pred HHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeC----CC---CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3456677778888888777665543 233455554321 22 2233667888899999999998754
No 380
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=48.04 E-value=1.7e+02 Score=24.67 Aligned_cols=119 Identities=8% Similarity=-0.022 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcc----cCCC-CEEEEecCCHHHHHHHHHHHh-C-CceEEEEecCCCCChHHHHHHHHhhcCCceEEE
Q psy2575 35 NPTSDTAPSQACEH----IHSN-EIILTLGYSKIVELFLKNAAQ-H-RKFQCIVMENSPENKGHELAVSLAKSKIQTVLI 107 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~~~-~~ILT~g~S~tV~~~L~~A~~-~-~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I 107 (165)
...++.|+++-.+. +..+ .+++|-|.+..+..++....+ + ..-+|++. +|.+.+...+ +...|+++..+
T Consensus 39 ~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~--~p~y~~~~~~--~~~~g~~~~~v 114 (350)
T TIGR03537 39 KALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFG--TPGYPVYERG--ALFAGGEPTAV 114 (350)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEc--CCCCcchHHH--HHhcCCEEEEc
Confidence 57788888876433 4455 788888877766555543333 2 12355555 4766554443 34578777766
Q ss_pred ccc-h---------HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 108 PDS-A---------MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 108 ~ds-a---------v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+.. . +...+.+-.++++=..-=-+-|.++..-=-..++-.|+++++++++
T Consensus 115 ~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 115 KLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred ccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 542 1 1122222223222111112223333322255677788999988775
No 381
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.01 E-value=1.3e+02 Score=23.50 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=26.4
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEE
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVL 106 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~ 106 (165)
.+++..|-|..+=.-|......+..+|+++..++..........+...+-++.+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 56 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIF 56 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEE
Confidence 356666666555433332222244577776544433333445555554444433
No 382
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=47.98 E-value=66 Score=24.54 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCceEEEccchHH--HhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMF--GLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~--~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
..+++.|++.|.++.+++...-. ..+.++|.+++.-.... .... ....+..-..+.++|++-+|
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~----~~~~-~~~~~~~~~~~~~~PilGIC 77 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSS----VYEE-DAPRVDPEIFELGVPVLGIC 77 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCccc----cccc-ccchhhHHHHhcCCCEEEEc
Confidence 45688888888888888754322 13456777777643211 1111 01122233344689999776
No 383
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=47.98 E-value=1.2e+02 Score=26.77 Aligned_cols=74 Identities=9% Similarity=0.180 Sum_probs=41.2
Q ss_pred eEEEEecCCCCChHHHHHHHHhhcCCceEEEccc-hHHHhch-hCCEEEEccceeecCC--CeeehhcHHHHHHHHhhCC
Q psy2575 77 FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS-AMFGLIS-RVNKIIIGTHTVMANG--GLRSVCGTHAVALAAQHYS 152 (165)
Q Consensus 77 f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds-av~~~m~-~v~~VllGAd~V~~nG--~vvnk~GT~~lAl~Ak~~~ 152 (165)
.+|.++|-. --..+++.|.+.|..+++++-. ....++. +.|.++++ +| ..........+..-+...+
T Consensus 178 ~~I~viD~G---~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLS------gGPgdp~~~~~~~~~i~~~~~~~ 248 (360)
T PRK12564 178 YKVVAIDFG---VKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLS------NGPGDPAALDYAIEMIRELLEKK 248 (360)
T ss_pred CEEEEEeCC---cHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEe------CCCCChHHHHHHHHHHHHHHHcC
Confidence 456666532 2356899999999999998843 2333332 35555553 22 1111112223333333467
Q ss_pred CcEEEEe
Q psy2575 153 IPYPCTF 159 (165)
Q Consensus 153 vPv~V~~ 159 (165)
+|++-+|
T Consensus 249 ~PilGIC 255 (360)
T PRK12564 249 IPIFGIC 255 (360)
T ss_pred CeEEEEC
Confidence 9999877
No 384
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.83 E-value=1.7e+02 Score=24.55 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=57.8
Q ss_pred EEEEec---CCHHHHHHHHHHHhCCceE-EEEecCCCCChHHHHHHHHhhcCCceEE-EccchH----HHhchhC-CEEE
Q psy2575 54 IILTLG---YSKIVELFLKNAAQHRKFQ-CIVMENSPENKGHELAVSLAKSKIQTVL-IPDSAM----FGLISRV-NKII 123 (165)
Q Consensus 54 ~ILT~g---~S~tV~~~L~~A~~~~~f~-ViV~Es~P~~eG~~la~~L~~~GI~v~~-I~dsav----~~~m~~v-~~Vl 123 (165)
++|||- ++.-+++|+..+++- .+. |++. .-|..|...+.+.+++.|++... ++.+.- ..+.+.. +++-
T Consensus 93 vlm~Y~N~i~~~G~e~f~~~~~~a-GvdGviip-DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 93 VLMTYYNPIFQYGVERFAADAAEA-GVDGLIIP-DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred EEEecccHHhhcCHHHHHHHHHHc-CCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 566653 233477899988872 233 4554 45667888999999999987665 555442 2222222 2221
Q ss_pred -EccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 124 -IGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 124 -lGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
++--.+.....-........+..+.+..++|++|=
T Consensus 171 ~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vG 206 (258)
T PRK13111 171 YVSRAGVTGARSADAADLAELVARLKAHTDLPVAVG 206 (258)
T ss_pred EEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEE
Confidence 22222222111222333446667777778999873
No 385
>PRK02186 argininosuccinate lyase; Provisional
Probab=47.78 E-value=91 Score=30.58 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=16.0
Q ss_pred EEEEecCCCCChHHHHHHHHhhcCCceEEEc
Q psy2575 78 QCIVMENSPENKGHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 78 ~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ 108 (165)
+++++|+++...|..++..+.+.|+.|..+.
T Consensus 4 ~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~ 34 (887)
T PRK02186 4 IFVFIESNTTGTGELLLRKALLRGFTPYFLT 34 (887)
T ss_pred EEEEEcCCCCccHHHHHHHHHHcCCEEEEEe
Confidence 3445555555555555555555555555444
No 386
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=47.55 E-value=24 Score=25.02 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHHHhhcCCceE----E-Ecc-chHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 93 LAVSLAKSKIQTV----L-IPD-SAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 93 la~~L~~~GI~v~----~-I~d-sav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
.++.|++.|..|. . +++ ..-..+|+.+=..+..||+|.-=++--+.-|...=..+|+..++||+
T Consensus 21 ~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 21 AAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 4777777774332 1 111 12245677666666677776666788888999998999999999987
No 387
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=47.35 E-value=1e+02 Score=25.30 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=54.4
Q ss_pred HHHHHhcccCCCCEEEEecCC--HHHHHHHHHHHh--CCce--------------------EEE-EecCCCCChHHHHHH
Q psy2575 41 APSQACEHIHSNEIILTLGYS--KIVELFLKNAAQ--HRKF--------------------QCI-VMENSPENKGHELAV 95 (165)
Q Consensus 41 Ia~~a~~~I~~~~~ILT~g~S--~tV~~~L~~A~~--~~~f--------------------~Vi-V~Es~P~~eG~~la~ 95 (165)
-.+.++++|.+...|..+|.+ ..+...|..-.. |+.. -++ +.-++...+-.+.++
T Consensus 117 ~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~ 196 (278)
T PRK11557 117 KLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAAD 196 (278)
T ss_pred HHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHH
Confidence 345577788888888887644 344444432222 2211 111 111222234456788
Q ss_pred HHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 96 SLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 96 ~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
..++.|+++..|+++.-..+-+.+|.+|...
T Consensus 197 ~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~ 227 (278)
T PRK11557 197 EALRVGAKVLAITGFTPNALQQRASHCLYTI 227 (278)
T ss_pred HHHHcCCCEEEEcCCCCCchHHhCCEEEEeC
Confidence 9999999999999998888888899998653
No 388
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=47.32 E-value=46 Score=24.47 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=11.5
Q ss_pred HHhchhCCEEEEccce
Q psy2575 113 FGLISRVNKIIIGTHT 128 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~ 128 (165)
...|.++|.+++++=.
T Consensus 65 ~~~l~~aD~iI~~sP~ 80 (152)
T PF03358_consen 65 YDKLKEADGIIFASPV 80 (152)
T ss_dssp HHHHHHSSEEEEEEEE
T ss_pred HhceecCCeEEEeecE
Confidence 3345679999999754
No 389
>PRK10717 cysteine synthase A; Provisional
Probab=47.30 E-value=1.3e+02 Score=25.60 Aligned_cols=57 Identities=18% Similarity=0.057 Sum_probs=40.2
Q ss_pred cCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 49 IHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
+.+|++|++.|.+.+-..+=..++. |.+++|++.+..|. ...+.++..|-+|..+..
T Consensus 61 ~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~----~k~~~~~~~GA~V~~~~~ 118 (330)
T PRK10717 61 LKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQ----EKKDLLRALGAELVLVPA 118 (330)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH----HHHHHHHHcCCEEEEeCC
Confidence 4566889998888766654444444 88889998877652 345667778888877764
No 390
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.06 E-value=1.6e+02 Score=26.95 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc-----hhCCEEEEc
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI-----SRVNKIIIG 125 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m-----~~v~~VllG 125 (165)
.+.|+..|+++.-...-+...+ +...|++.|..|. .++.+++.|.++.+-. ..-...+ +++|.+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~-~g~~vvvId~d~~-----~~~~~~~~g~~~i~GD-~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLA-AGIPLVVIETSRT-----RVDELRERGIRAVLGN-AANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHH-CCCCEEEEECCHH-----HHHHHHHCCCeEEEcC-CCCHHHHHhcCccccCEEEEE
Confidence 3678888999877766665544 4467888887764 4677778888876653 3334444 356666554
No 391
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=47.04 E-value=98 Score=21.67 Aligned_cols=88 Identities=16% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHh----chh
Q psy2575 43 SQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGL----ISR 118 (165)
Q Consensus 43 ~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~----m~~ 118 (165)
+..++.|.+.+.|..+|.+....-... ++..|...|.++..+++...... +..
T Consensus 4 ~~~~~~i~~~~~i~i~g~g~s~~~a~~-----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (139)
T cd05013 4 EKAVDLLAKARRIYIFGVGSSGLVAEY-----------------------LAYKLLRLGKPVVLLSDPHLQLMSAANLTP 60 (139)
T ss_pred HHHHHHHHhCCEEEEEEcCchHHHHHH-----------------------HHHHHHHcCCceEEecCHHHHHHHHHcCCC
Q ss_pred CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 119 VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 119 v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
-|.+|+-+.. |. ..-...++-.|+++++|+++++.
T Consensus 61 ~~~~i~iS~~----g~---~~~~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 61 GDVVIAISFS----GE---TKETVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred CCEEEEEeCC----CC---CHHHHHHHHHHHHcCCeEEEEcC
No 392
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=47.03 E-value=50 Score=29.76 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=26.3
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCC
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPEN 88 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~ 88 (165)
..||..+++.....+++.+++ ..++++++.+.|..
T Consensus 3 ~kvLi~~~geia~~ii~a~~~-~Gi~~v~v~~~~d~ 37 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAE-MGIRSVAIYSEADR 37 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHH-cCCeEEEEeCCCcc
Confidence 479999999999999888876 34666666665543
No 393
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=46.93 E-value=50 Score=26.00 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=35.2
Q ss_pred EEEEecCCHHHHHHHHHHHh-C-----CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 54 IILTLGYSKIVELFLKNAAQ-H-----RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~-~-----~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
-++++..+++|+.|+....+ + .+.+++++ |...++.|++.|+...++++.
T Consensus 179 d~ivftS~~~v~~~~~~~~~~~~~~~~~~~~~~ai-------G~~Ta~~l~~~G~~~~~~~~~ 234 (249)
T PRK05928 179 DAVIFTSPSTVRAFFSLAPELGRREWLLSCKAVVI-------GERTAEALRELGIKVIIVPDS 234 (249)
T ss_pred CEEEECCHHHHHHHHHHhcccchhHHHhCCeEEEe-------CHHHHHHHHHcCCCcceecCC
Confidence 34445556688888886654 2 14556655 888999999999988877754
No 394
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=46.87 E-value=1.9e+02 Score=24.89 Aligned_cols=119 Identities=9% Similarity=0.031 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhcc----cCCCCE--EEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEE
Q psy2575 35 NPTSDTAPSQACEH----IHSNEI--ILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLI 107 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~~~~~--ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I 107 (165)
...++.|+++.... +...++ ++|.|.+..+...+..... +..-+|+|.+ |.+.+... .+...|.++..+
T Consensus 72 ~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~--P~y~~~~~--~~~~~g~~~v~v 147 (396)
T PRK09257 72 AAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSD--PTWPNHRA--IFEAAGLEVKTY 147 (396)
T ss_pred HHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECC--CCcccHHH--HHHHcCCcEEEE
Confidence 56789999876432 233444 7788888766555432221 2333555543 66665543 333467776666
Q ss_pred cc----c------hHHHhch---hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 108 PD----S------AMFGLIS---RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 108 ~d----s------av~~~m~---~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+. . .+-..+. .-+++++-+.-=-+.|.++.+-=-..++-+|+++++.++.
T Consensus 148 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 148 PYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred eccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 42 1 2222222 1245555454445666666666677888888988887754
No 395
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=46.77 E-value=1.9e+02 Score=24.95 Aligned_cols=117 Identities=12% Similarity=-0.021 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHH-hcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCC----------
Q psy2575 34 ANPTSDTAPSQA-CEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKI---------- 102 (165)
Q Consensus 34 ~~~~~~~Ia~~a-~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI---------- 102 (165)
....++.|+++- ...+...++++|-|.+..+.. |..... ..-+|+|. .|.+.+... .+...|+
T Consensus 77 ~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~-l~~l~~-~gd~Vlv~--~P~y~~~~~--~~~~~g~~~~~~~~~~~ 150 (402)
T TIGR03542 77 YPFLREAIAENDYRGRIDPEEIFISDGAKCDVFR-LQSLFG-SDNTVAVQ--DPVYPAYVD--SNVMAGRAGVLDDDGRY 150 (402)
T ss_pred CHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHH-HHHhcC-CCCEEEEe--CCCCcchHH--HHHHcCCcccccccccc
Confidence 357788999864 224777788888887766554 333332 33355554 465554433 2334555
Q ss_pred -ceEEEccchHH-H---h--chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 103 -QTVLIPDSAMF-G---L--ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 103 -~v~~I~dsav~-~---~--m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
++..++...-. + + .++++.+++. .-=-+-|.++.+.=-..++-.|+++++++++
T Consensus 151 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 211 (402)
T TIGR03542 151 SKITYLPCTKENNFIPDLPEEPKIDIIYLC-SPNNPTGTVLTKEQLKELVDYANEHGSLILF 211 (402)
T ss_pred ceEEEeecchhhCCCCCccccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 77666542211 1 1 1334555552 2223346666655567788889999887764
No 396
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=46.75 E-value=1.8e+02 Score=24.67 Aligned_cols=109 Identities=10% Similarity=0.050 Sum_probs=49.2
Q ss_pred HHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHh-hcCCceEEEccchHHHhchhC--
Q psy2575 43 SQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLA-KSKIQTVLIPDSAMFGLISRV-- 119 (165)
Q Consensus 43 ~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~-~~GI~v~~I~dsav~~~m~~v-- 119 (165)
+..++++...+.|++-|.+.....++. +.-++.-+|++. .|.+.+....-.+. ..++.+..+....+-..+++.
T Consensus 90 ~~ia~~~g~~~~ii~~~~~~a~~~~~~-~l~~~gd~vi~~--~~~~~s~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~ 166 (393)
T TIGR01822 90 AKIAAFLGTEDTILYASCFDANGGLFE-TLLGAEDAIISD--ALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARA 166 (393)
T ss_pred HHHHHHhCCCcEEEECchHHHHHHHHH-HhCCCCCEEEEe--ccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhh
Confidence 344456655566666443333333332 222344456663 35555443332332 233322222223343444421
Q ss_pred ---CEEEEccceee-cCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 120 ---NKIIIGTHTVM-ANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 120 ---~~VllGAd~V~-~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+..++-.+.++ ..|.+ .. -..++-+|++|++++++
T Consensus 167 ~~~~~~~v~~~~v~~~tG~~-~~--l~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 167 AGARHRLIATDGVFSMDGVI-AP--LDEICDLADKYDALVMV 205 (393)
T ss_pred cCCCceEEEEeCCccCCCCc-CC--HHHHHHHHHHcCCEEEE
Confidence 22222233333 33333 22 35678889999998876
No 397
>PRK05634 nucleosidase; Provisional
Probab=46.72 E-value=19 Score=28.56 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=22.8
Q ss_pred CCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 133 GGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 133 G~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+..+-..=++.+|.+|+.+++||+++
T Consensus 126 ~a~~vDME~aAva~va~~~~vPf~~i 151 (185)
T PRK05634 126 RADLVDMEGYAVAAVAAEFGVPCRLV 151 (185)
T ss_pred cCeEEecHHHHHHHHHHHhCCCEEEE
Confidence 45677888999999999999999986
No 398
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=46.59 E-value=81 Score=25.67 Aligned_cols=75 Identities=21% Similarity=0.127 Sum_probs=47.7
Q ss_pred ecCCCCChHHHHHHHHhhcCCceEEEccchH---H---HhchhCCEEEEccceeec-----------CCCeeehhcHHHH
Q psy2575 82 MENSPENKGHELAVSLAKSKIQTVLIPDSAM---F---GLISRVNKIIIGTHTVMA-----------NGGLRSVCGTHAV 144 (165)
Q Consensus 82 ~Es~P~~eG~~la~~L~~~GI~v~~I~dsav---~---~~m~~v~~VllGAd~V~~-----------nG~vvnk~GT~~l 144 (165)
+-..+..+...+++.|.+.|+++.-|+.+.- . .+-++...+++||=+|+. --.+++..-.-.+
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v 93 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPEL 93 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 3334455667788888888877655553321 1 222345557777766653 1135566667788
Q ss_pred HHHHhhCCCcEE
Q psy2575 145 ALAAQHYSIPYP 156 (165)
Q Consensus 145 Al~Ak~~~vPv~ 156 (165)
+-.|+++++|++
T Consensus 94 ~~~~~~~~i~~i 105 (204)
T TIGR01182 94 AKHAQDHGIPII 105 (204)
T ss_pred HHHHHHcCCcEE
Confidence 889999999987
No 399
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=46.49 E-value=89 Score=24.19 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCceEEEccchHHHhchhCC--EEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 92 ELAVSLAKSKIQTVLIPDSAMFGLISRVN--KIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~dsav~~~m~~v~--~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
.+++.|++.|+++.+++-..-..-+...| .+++.--. ++.... +...+-..+.+.++|++-+|
T Consensus 13 ~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~----~~~~~~-~~~~~i~~~~~~~~PilGIC 77 (188)
T TIGR00888 13 LIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGP----SSVYAE-NAPRADEKIFELGVPVLGIC 77 (188)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCC----CCcCcC-CchHHHHHHHhCCCCEEEEC
Confidence 46778888888888876332112223334 44443211 111111 22334444456789999776
No 400
>PRK05939 hypothetical protein; Provisional
Probab=46.37 E-value=2.1e+02 Score=25.22 Aligned_cols=111 Identities=4% Similarity=-0.024 Sum_probs=55.7
Q ss_pred HHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCCh-HHHHHHHHhhcCCceEEEccc---hHHHh
Q psy2575 40 TAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENK-GHELAVSLAKSKIQTVLIPDS---AMFGL 115 (165)
Q Consensus 40 ~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~e-G~~la~~L~~~GI~v~~I~ds---av~~~ 115 (165)
...+.-+++-.....|++-+....+...|.... ++.-+|++.+ +.+- -..+...+...|+++.+++.. .+...
T Consensus 51 ~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all-~~Gd~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~ 127 (397)
T PRK05939 51 ALEAKITKMEGGVGTVCFATGMAAIAAVFLTLL-RAGDHLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAA 127 (397)
T ss_pred HHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHc-CCCCEEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHh
Confidence 333333334333345555444444444444333 3334677754 3332 234446677889999988643 34444
Q ss_pred chh-CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 116 ISR-VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 116 m~~-v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+.. ...|++- ..--+.|.+ .--..++-+|++++++++|
T Consensus 128 l~~~tklV~ve-sp~NptG~v---~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 128 IRPNTRMVFVE-TIANPGTQV---ADLAGIGALCRERGLLYVV 166 (397)
T ss_pred CCCCCeEEEEE-CCCCCCCCH---HhHHHHHHHHHHcCCEEEE
Confidence 433 3333331 111122222 1234577889999998876
No 401
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=46.19 E-value=1.3e+02 Score=22.96 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=49.9
Q ss_pred HHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEE
Q psy2575 43 SQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKI 122 (165)
Q Consensus 43 ~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~V 122 (165)
+++++.|.+...|..+|.+..- .+ +..+..+|...|+++..+.|.. ...+.+=|.+
T Consensus 24 ~~~~~~i~~a~~I~i~G~G~S~--~~---------------------A~~~~~~l~~~g~~~~~~~~~~-~~~~~~~D~v 79 (179)
T cd05005 24 DKLISAILNAKRIFVYGAGRSG--LV---------------------AKAFAMRLMHLGLNVYVVGETT-TPAIGPGDLL 79 (179)
T ss_pred HHHHHHHHhCCeEEEEecChhH--HH---------------------HHHHHHHHHhCCCeEEEeCCCC-CCCCCCCCEE
Confidence 3445566666777777655431 01 1234556666677777766542 2233444555
Q ss_pred EEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 123 IIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 123 llGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
|+-+ ..|. ..-+..++-.||+.++|++.++..
T Consensus 80 I~iS----~sG~---t~~~i~~~~~ak~~g~~iI~IT~~ 111 (179)
T cd05005 80 IAIS----GSGE---TSSVVNAAEKAKKAGAKVVLITSN 111 (179)
T ss_pred EEEc----CCCC---cHHHHHHHHHHHHCCCeEEEEECC
Confidence 4322 2232 233456778899999999998753
No 402
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=46.12 E-value=1.4e+02 Score=24.72 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=64.7
Q ss_pred ccCCC-CEEEEecCCHHHHHHHHHHHhCCceE-------EEEecC--CCC------ChHHHHHHHHhhcCCceEEEccch
Q psy2575 48 HIHSN-EIILTLGYSKIVELFLKNAAQHRKFQ-------CIVMEN--SPE------NKGHELAVSLAKSKIQTVLIPDSA 111 (165)
Q Consensus 48 ~I~~~-~~ILT~g~S~tV~~~L~~A~~~~~f~-------ViV~Es--~P~------~eG~~la~~L~~~GI~v~~I~dsa 111 (165)
+...| ..|++||.++.+...+....-..+|. .-+++. .+. .-...++..|++.|++..-++-..
T Consensus 24 l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~~ln~~lv~~L~~~Gv~a~~l~~~~ 103 (268)
T PRK14058 24 LWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMALINKQLVERLQSLGVNAVGLSGLD 103 (268)
T ss_pred HHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCccc
Confidence 33444 58999999998888776543223331 112211 111 113455778888888755544322
Q ss_pred --------------------------------------HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCC
Q psy2575 112 --------------------------------------MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSI 153 (165)
Q Consensus 112 --------------------------------------v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~v 153 (165)
+..++..-..+++...++..+|...+--+=...+.+|+..+-
T Consensus 104 ~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A 183 (268)
T PRK14058 104 GGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKA 183 (268)
T ss_pred CCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCC
Confidence 222334445677777666667777777777777788888876
Q ss_pred cEEE
Q psy2575 154 PYPC 157 (165)
Q Consensus 154 Pv~V 157 (165)
.-++
T Consensus 184 ~~li 187 (268)
T PRK14058 184 EALV 187 (268)
T ss_pred CEEE
Confidence 5443
No 403
>PRK05568 flavodoxin; Provisional
Probab=46.00 E-value=82 Score=22.93 Aligned_cols=65 Identities=6% Similarity=-0.033 Sum_probs=34.5
Q ss_pred HHHHhhcCCceEEEccchH-HHhchhCCEEEEccceeecCCCee--ehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 94 AVSLAKSKIQTVLIPDSAM-FGLISRVNKIIIGTHTVMANGGLR--SVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 94 a~~L~~~GI~v~~I~dsav-~~~m~~v~~VllGAd~V~~nG~vv--nk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
++.+.+.|++++++..... ..-+.++|.+++|+-... +++. ..+-.+.-.+.....++|+.+++-
T Consensus 23 ~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~--~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t 90 (142)
T PRK05568 23 AEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMG--DEVLEEGEMEPFVESISSLVKGKKLVLFGS 90 (142)
T ss_pred HHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccC--cccccchhHHHHHHHhhhhhCCCEEEEEEc
Confidence 4444556777666653332 124678999999987742 2332 122222222222235677777664
No 404
>PRK00758 GMP synthase subunit A; Validated
Probab=45.74 E-value=1.1e+02 Score=23.59 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCceEEEccchHHHhchhC-CEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMFGLISRV-NKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~~~m~~v-~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
..+++.|++.|+++.+++...-..-+.+. |.+++.-- .-....+ .+.-..++.++|++-+|
T Consensus 13 ~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg------~~~~~~~--~~~~~l~~~~~PilGIC 74 (184)
T PRK00758 13 HLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGG------PDIERAG--NCPEYLKELDVPILGIC 74 (184)
T ss_pred HHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCC------CChhhcc--ccHHHHHhCCCCEEEEe
Confidence 34577777778887777733222223444 55554432 1122222 12323346789999777
No 405
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=45.62 E-value=2e+02 Score=24.92 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=63.1
Q ss_pred HHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCC---------C-------ChH----HHHHHHHh
Q psy2575 40 TAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSP---------E-------NKG----HELAVSLA 98 (165)
Q Consensus 40 ~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P---------~-------~eG----~~la~~L~ 98 (165)
.+...+.+.|++ ..|+..|-+..=-.+.....+ |-. ++.++|... . .+| ..++++|+
T Consensus 13 ~~G~~~Q~~L~~-~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 13 GIGEEGQRKIRE-KHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred hcCHHHHHhhcC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 345555666654 468888877543444443333 421 344444322 1 012 23356676
Q ss_pred hc--CCceEEEcc----chHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 99 KS--KIQTVLIPD----SAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 99 ~~--GI~v~~I~d----sav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
+. +++++.+.. ..+..+++++|.|+.+.|..- --+.+..+|+.+++|++..+
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~---------~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFD---------TRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 64 466655532 334556788999999987532 23567788999999998654
No 406
>PRK08363 alanine aminotransferase; Validated
Probab=45.59 E-value=2e+02 Score=24.75 Aligned_cols=118 Identities=9% Similarity=0.045 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHhcc----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEE-c
Q psy2575 34 ANPTSDTAPSQACEH----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLI-P 108 (165)
Q Consensus 34 ~~~~~~~Ia~~a~~~----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I-~ 108 (165)
....++.|+++-... +...++++|.|.+..+..++... -++.-+|++.+ |.+.+... .....|..+..+ +
T Consensus 72 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~-~~~gd~Vl~~~--p~y~~~~~--~~~~~g~~~v~~~~ 146 (398)
T PRK08363 72 LPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-LDPGDEILIPG--PSYPPYTG--LVKFYGGVPVEYRT 146 (398)
T ss_pred cHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh-CCCCCEEEEcC--CCCcchHH--HHHHcCCEEEEecc
Confidence 467788898875432 55567888877776655555433 23444666653 55554432 223455544433 1
Q ss_pred -cc--------hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 109 -DS--------AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 109 -ds--------av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
|. .+...+ ++...+++ ..-=-+.|.++...=-..++-.|+++++++++
T Consensus 147 ~~~~~~~~d~~~l~~~~~~~~~~v~l-~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~ 204 (398)
T PRK08363 147 IEEEGWQPDIDDIRKKITEKTKAIAV-INPNNPTGALYEKKTLKEILDIAGEHDLPVIS 204 (398)
T ss_pred ccccCCcCCHHHHHhhCCcceEEEEE-ECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 11 111122 22333333 22222344444443345677778888887764
No 407
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=45.46 E-value=87 Score=27.49 Aligned_cols=39 Identities=13% Similarity=0.353 Sum_probs=30.5
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI 116 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m 116 (165)
..++|.|+| ||+.+ ++.+++++.|..+.+|+|.-+...+
T Consensus 154 ~dltV~vLd-RpRH~--~lI~eiR~~Gari~Li~DGDVa~ai 192 (321)
T TIGR00330 154 SDLTVTILA-KPRHD--AVIAEMQQLGVRVFAIPDGDVAASI 192 (321)
T ss_pred hHeEEEEEc-CchHH--HHHHHHHHcCCeEEEeccccHHHHH
Confidence 346677665 77764 7899999999999999997775544
No 408
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=45.41 E-value=1.7e+02 Score=24.02 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHH-HHhhcCCceEEEcc-----
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAV-SLAKSKIQTVLIPD----- 109 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~-~L~~~GI~v~~I~d----- 109 (165)
...+.+.+..++++.+.+.++|.+.|.....++... -++.-+|++.+. .+.....+. ...-.|+++..++.
T Consensus 32 ~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l-~~~gd~v~~~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 108 (338)
T cd06502 32 PTTAKLEARAAELFGKEAALFVPSGTAANQLALAAH-TQPGGSVICHET--AHIYTDEAGAPEFLSGVKLLPVPGENGKL 108 (338)
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHh-cCCCCeEEEecC--cceeeecCCcHHHHcCceEEeecCCCCcC
Confidence 335555555556666667888877765544444433 244456776543 322211110 11116777776653
Q ss_pred --chHHHhch--------hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 --SAMFGLIS--------RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 --sav~~~m~--------~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..+...+. +...|++- .....|+++...--..++-.|++++++++|
T Consensus 109 d~~~l~~~i~~~~~~~~~~~~~v~l~--~p~n~g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 109 TPEDLEAAIRPRDDIHFPPPSLVSLE--NTTEGGTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred CHHHHHHHhhccCCCcCCcceEEEEE--eecCCccccCHHHHHHHHHHHHHcCCeEee
Confidence 23333333 22233322 222235555444445577888999998876
No 409
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=45.13 E-value=58 Score=29.59 Aligned_cols=82 Identities=11% Similarity=0.182 Sum_probs=47.9
Q ss_pred HHHHHHhcccCC------CCEEEEecCCH--HHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHH-hhcC--CceEEE
Q psy2575 40 TAPSQACEHIHS------NEIILTLGYSK--IVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSL-AKSK--IQTVLI 107 (165)
Q Consensus 40 ~Ia~~a~~~I~~------~~~ILT~g~S~--tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L-~~~G--I~v~~I 107 (165)
.|.+.-.+.... +.+||..|.++ .+...+..+++ ++..+||.+|-.|.-. ...+.+ .+.| =.|++|
T Consensus 169 AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~--~~l~~~v~~n~w~~~V~vi 246 (448)
T PF05185_consen 169 AIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV--VTLQKRVNANGWGDKVTVI 246 (448)
T ss_dssp HHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH--HHHHHHHHHTTTTTTEEEE
T ss_pred HHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH--HHHHHHHHhcCCCCeEEEE
Confidence 343333455554 46899987555 55555655444 7889999999888522 122232 4444 368888
Q ss_pred ccchHHHhch-hCCEEE
Q psy2575 108 PDSAMFGLIS-RVNKII 123 (165)
Q Consensus 108 ~dsav~~~m~-~v~~Vl 123 (165)
...+=..-.+ +||.++
T Consensus 247 ~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 247 HGDMREVELPEKVDIIV 263 (448)
T ss_dssp ES-TTTSCHSS-EEEEE
T ss_pred eCcccCCCCCCceeEEE
Confidence 8765555555 588887
No 410
>KOG0029|consensus
Probab=45.03 E-value=34 Score=31.56 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=41.2
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc-----hHHH-hchhCCEEEEccceeecCCCeeehhcHHHHHHHH
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS-----AMFG-LISRVNKIIIGTHTVMANGGLRSVCGTHAVALAA 148 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds-----av~~-~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~A 148 (165)
++.+|+|+-+- ..|...|+.|.+.|++|.+.--. =++. .++..+.|=+|++.+.. +..-++++++
T Consensus 14 ~~~~VIVIGAG--iaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g-------~~~npl~~l~ 84 (501)
T KOG0029|consen 14 KKKKVIVIGAG--LAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTG-------VYNNPLALLS 84 (501)
T ss_pred CCCcEEEECCc--HHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecC-------cCccHHHHHH
Confidence 34455555332 23445555555555554433210 0111 24456666677655443 4444999999
Q ss_pred hhCCCcEEEE
Q psy2575 149 QHYSIPYPCT 158 (165)
Q Consensus 149 k~~~vPv~V~ 158 (165)
++.+.+.+-.
T Consensus 85 ~qlgl~~~~~ 94 (501)
T KOG0029|consen 85 KQLGLELYKV 94 (501)
T ss_pred HHhCccccee
Confidence 9999988753
No 411
>PRK09148 aminotransferase; Validated
Probab=44.99 E-value=2.1e+02 Score=24.85 Aligned_cols=117 Identities=9% Similarity=0.041 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhcc----cCCC-CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 35 NPTSDTAPSQACEH----IHSN-EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~~~-~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
...++.++++-.+. +... ++++|.|.+..+..++.... ...-+|++. .|.+.+...+ +...|+++..++.
T Consensus 71 ~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vl~~--~P~y~~~~~~--~~~~g~~v~~v~~ 145 (405)
T PRK09148 71 PGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT-APGDVILCP--NPSYPIHAFG--FIMAGGVIRSVPA 145 (405)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc-CCCCEEEEc--CCCCcccHHH--HHhcCCEEEEEeC
Confidence 46788888876432 4454 68888887766555444332 334456654 4666654332 2346888777653
Q ss_pred c-------hHHHhc----hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 S-------AMFGLI----SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 s-------av~~~m----~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. .+...+ ++...+++-- -=-+.|.+....=-..++-.|+++++.+++
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~v~l~~-P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 203 (405)
T PRK09148 146 EPDEEFFPALERAVRHSIPKPIALIVNY-PSNPTAYVADLDFYKDVVAFAKKHDIIILS 203 (405)
T ss_pred CCCCCCccCHHHHHhhccccceEEEEeC-CCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 2 112222 2333344321 112446666655556777888988886664
No 412
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=44.98 E-value=1e+02 Score=24.87 Aligned_cols=64 Identities=5% Similarity=0.007 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCceEEEccchHHHh----chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMFGL----ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~~~----m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
..+..+|...|+++.++.+...... +.+=|.+++-+ .+| ...=+..++-.||..+.|++.++..
T Consensus 16 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS----~sG---~t~~~~~~~~~a~~~g~~ii~iT~~ 83 (268)
T TIGR00393 16 KKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMIS----YSG---ESLELLNLIPHLKRLSHKIIAFTGS 83 (268)
T ss_pred HHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEe----CCC---CCHHHHHHHHHHHHcCCcEEEEECC
Confidence 4567778888899888887665542 33345555432 233 2333566788899999999998764
No 413
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=44.95 E-value=1e+02 Score=24.04 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=3.4
Q ss_pred ceEEEcc
Q psy2575 103 QTVLIPD 109 (165)
Q Consensus 103 ~v~~I~d 109 (165)
+..++.|
T Consensus 111 d~i~~lD 117 (251)
T cd06439 111 EIVVFTD 117 (251)
T ss_pred CEEEEEc
Confidence 5554444
No 414
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=44.81 E-value=72 Score=26.45 Aligned_cols=23 Identities=17% Similarity=-0.023 Sum_probs=19.6
Q ss_pred eehhcHHHHHHHHhhCCCcEEEE
Q psy2575 136 RSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 136 vnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+|..|+..++-+|+..+++++.+
T Consensus 80 ~N~~~~~~l~~aa~~~g~~~v~~ 102 (299)
T PRK09987 80 LNATSVEAIAKAANEVGAWVVHY 102 (299)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEE
Confidence 68889999999999999886544
No 415
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=44.81 E-value=52 Score=26.73 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=19.3
Q ss_pred CChHHHHHHHHhhcCCceEEEccch
Q psy2575 87 ENKGHELAVSLAKSKIQTVLIPDSA 111 (165)
Q Consensus 87 ~~eG~~la~~L~~~GI~v~~I~dsa 111 (165)
..+...+.+.|++.|+++..+....
T Consensus 9 ~~~~~~l~~al~~~g~~~~~~~~~~ 33 (280)
T TIGR02144 9 RPDEKMLIEELEKLGLPYRKIYVPA 33 (280)
T ss_pred CHHHHHHHHHHHHcCCceEEEEhhh
Confidence 3456788999999999999875443
No 416
>PRK05637 anthranilate synthase component II; Provisional
Probab=44.75 E-value=98 Score=24.91 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=41.8
Q ss_pred EEEEecCCCCChHHHHHHHHhhcCCceEEEccch-HHHhch-hCCEEEE--ccceeecCCCeeehhcHHHHHHHHh-hCC
Q psy2575 78 QCIVMENSPENKGHELAVSLAKSKIQTVLIPDSA-MFGLIS-RVNKIII--GTHTVMANGGLRSVCGTHAVALAAQ-HYS 152 (165)
Q Consensus 78 ~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsa-v~~~m~-~v~~Vll--GAd~V~~nG~vvnk~GT~~lAl~Ak-~~~ 152 (165)
+|+++|....+ -..+++.|++.|.++++++... ...+.. +.|.+++ |...+... +. ...++.+ ..+
T Consensus 3 ~il~iD~~dsf-~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~-------~~-~~~li~~~~~~ 73 (208)
T PRK05637 3 HVVLIDNHDSF-VYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDA-------GN-MMALIDRTLGQ 73 (208)
T ss_pred EEEEEECCcCH-HHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHh-------hH-HHHHHHHHhCC
Confidence 46666654333 2457889999999999888642 222222 4577777 44333222 22 2233322 236
Q ss_pred CcEEEEe
Q psy2575 153 IPYPCTF 159 (165)
Q Consensus 153 vPv~V~~ 159 (165)
+|++-+|
T Consensus 74 ~PiLGIC 80 (208)
T PRK05637 74 IPLLGIC 80 (208)
T ss_pred CCEEEEc
Confidence 9999776
No 417
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.67 E-value=1.4e+02 Score=25.58 Aligned_cols=68 Identities=12% Similarity=0.292 Sum_probs=41.6
Q ss_pred EEEEecCCHHHHHHHHHHHhCC-ceEEE-EecCCCCChHHHHHHHHhhcCCceEEEc---------cchHHHhchh--CC
Q psy2575 54 IILTLGYSKIVELFLKNAAQHR-KFQCI-VMENSPENKGHELAVSLAKSKIQTVLIP---------DSAMFGLISR--VN 120 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~-~f~Vi-V~Es~P~~eG~~la~~L~~~GI~v~~I~---------dsav~~~m~~--v~ 120 (165)
.||.-|.+++++.++...+++. +.+|. |+-++|.. .....+.|||+.+++ +..+...+++ +|
T Consensus 97 avl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~~-----~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~D 171 (289)
T PRK13010 97 VIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDL-----QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAE 171 (289)
T ss_pred EEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChhH-----HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCC
Confidence 4556678888888887766543 34533 45556642 244556799999875 2233444543 78
Q ss_pred EEEEcc
Q psy2575 121 KIIIGT 126 (165)
Q Consensus 121 ~VllGA 126 (165)
.+++..
T Consensus 172 livlag 177 (289)
T PRK13010 172 LVVLAR 177 (289)
T ss_pred EEEEeh
Confidence 877653
No 418
>PRK08636 aspartate aminotransferase; Provisional
Probab=44.62 E-value=2.1e+02 Score=24.74 Aligned_cols=117 Identities=9% Similarity=-0.011 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhcc----cCCC-CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 35 NPTSDTAPSQACEH----IHSN-EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~~~-~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
...++.|+++..+. +... .+++|.|.+..+..++... -+..-+|+|. .|.+.+...+ +...|.++..++.
T Consensus 74 ~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-~~~gd~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~ 148 (403)
T PRK08636 74 YKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAI-TNPGDVAIVP--DPAYPIHSQA--FILAGGNVHKMPL 148 (403)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHh-CCCCCEEEEc--CCCCcchHHH--HHhcCCEEEEEec
Confidence 45788999876432 4444 5888888776655544433 2334455555 3777665443 3346777666542
Q ss_pred ---c-----------hHHHhch----hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 ---S-----------AMFGLIS----RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 ---s-----------av~~~m~----~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. .+...++ ++..+++- .-=-+.|.++..-=-..++-+|+++++.+++
T Consensus 149 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 149 EYNEDFELDEDQFFENLEKALRESSPKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred cccccCccChhhhhhHHHHHHhhccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 1 1122222 34344432 1124567777776667888899999987764
No 419
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.55 E-value=77 Score=27.13 Aligned_cols=57 Identities=11% Similarity=0.191 Sum_probs=30.1
Q ss_pred CChHHHHHHHHhhcCCceEEEccc--hHHHhchhCCEEEEccc-------eeecCCCeeehhcHHH
Q psy2575 87 ENKGHELAVSLAKSKIQTVLIPDS--AMFGLISRVNKIIIGTH-------TVMANGGLRSVCGTHA 143 (165)
Q Consensus 87 ~~eG~~la~~L~~~GI~v~~I~ds--av~~~m~~v~~VllGAd-------~V~~nG~vvnk~GT~~ 143 (165)
..=|+-++.-|.+.|..||..... -+..+.+++|.|+.++= -.+..|.++-.+|+..
T Consensus 168 ~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 168 NIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSS 233 (278)
T ss_pred ccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccc
Confidence 334555666666555555544321 14555667777764431 1244566666666544
No 420
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=44.52 E-value=2e+02 Score=27.90 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=46.0
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhc--hhCCEEEEc--cceeecCCCeeehhcHHHHHHHHhh
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLI--SRVNKIIIG--THTVMANGGLRSVCGTHAVALAAQH 150 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m--~~v~~VllG--Ad~V~~nG~vvnk~GT~~lAl~Ak~ 150 (165)
...+|.|+|....+ -..+++.|++.|++++++......... .+.|.+|+. ..... ..+-..+..-+-.
T Consensus 515 ~~~~IlVID~gds~-~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~-------d~~~~~~I~~~~~ 586 (717)
T TIGR01815 515 EGRRILLVDHEDSF-VHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPA-------DFDVAGTIDAALA 586 (717)
T ss_pred CCCEEEEEECCChh-HHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCch-------hcccHHHHHHHHH
Confidence 45678888765333 457899999999999888643221121 347777772 21111 2232333333445
Q ss_pred CCCcEEEEe
Q psy2575 151 YSIPYPCTF 159 (165)
Q Consensus 151 ~~vPv~V~~ 159 (165)
.++|++-+|
T Consensus 587 ~~iPvLGIC 595 (717)
T TIGR01815 587 RGLPVFGVC 595 (717)
T ss_pred CCCCEEEEC
Confidence 789999877
No 421
>PRK08462 biotin carboxylase; Validated
Probab=44.46 E-value=65 Score=28.50 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=26.5
Q ss_pred CCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCC
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPEN 88 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~ 88 (165)
-.+||..+++.....+++.+++ ..++|+++.+.|..
T Consensus 4 ~k~ili~~~g~~~~~~~~~~~~-~G~~~v~~~~~~d~ 39 (445)
T PRK08462 4 IKRILIANRGEIALRAIRTIQE-MGKEAIAIYSTADK 39 (445)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-cCCCEEEEechhhc
Confidence 3589999999988888888876 34667777555544
No 422
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=44.45 E-value=1.6e+02 Score=23.61 Aligned_cols=69 Identities=12% Similarity=0.291 Sum_probs=40.0
Q ss_pred EEEEecCCHHHHHHHHHHHhC-CceEEEE-ecCCCCChHHHHHHHHhhcCCceEEEcc----------chHHHhch--hC
Q psy2575 54 IILTLGYSKIVELFLKNAAQH-RKFQCIV-MENSPENKGHELAVSLAKSKIQTVLIPD----------SAMFGLIS--RV 119 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~-~~f~ViV-~Es~P~~eG~~la~~L~~~GI~v~~I~d----------sav~~~m~--~v 119 (165)
.|+.-|.++..+.++....++ ....|.+ +-.+|...+ .....+.|||+..+.. ..+...++ ++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~---~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG---LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchH---HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 355566777777777766553 3345443 344455443 3444668999988662 23344443 48
Q ss_pred CEEEEc
Q psy2575 120 NKIIIG 125 (165)
Q Consensus 120 ~~VllG 125 (165)
|.+++-
T Consensus 82 D~iv~~ 87 (200)
T PRK05647 82 DLVVLA 87 (200)
T ss_pred CEEEhH
Confidence 887763
No 423
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=44.40 E-value=1.3e+02 Score=22.51 Aligned_cols=9 Identities=33% Similarity=0.335 Sum_probs=4.1
Q ss_pred CEEEEecCC
Q psy2575 53 EIILTLGYS 61 (165)
Q Consensus 53 ~~ILT~g~S 61 (165)
++|++-..|
T Consensus 29 eiiVvddgS 37 (214)
T cd04196 29 ELIISDDGS 37 (214)
T ss_pred EEEEEeCCC
Confidence 444444433
No 424
>PTZ00377 alanine aminotransferase; Provisional
Probab=44.37 E-value=2.3e+02 Score=25.28 Aligned_cols=117 Identities=10% Similarity=-0.029 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhcc----cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc-
Q psy2575 35 NPTSDTAPSQACEH----IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD- 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~----I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d- 109 (165)
...++.|+++..+. +...++++|-|.+..+..++.....+..-+|++. .|.+.+...+ +...|..+..++.
T Consensus 118 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~--~P~y~~y~~~--~~~~g~~~v~v~~~ 193 (481)
T PTZ00377 118 PFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIP--IPQYPLYSAA--ITLLGGKQVPYYLD 193 (481)
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEEC--CCCchhHHHH--HHHcCCEEEEEEec
Confidence 56788999876543 5566788888877766655554432233455554 4666554333 2335655554432
Q ss_pred ---------chHHHhch-------hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 110 ---------SAMFGLIS-------RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 110 ---------sav~~~m~-------~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
..+...+. +...+++- .-=-+.|.++.+-=-..|+-+|+++++.++
T Consensus 194 ~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~-~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI 255 (481)
T PTZ00377 194 EEKGWSLDQEELEEAYEQAVRNGITPRALVVI-NPGNPTGQVLTRDVMEEIIKFCYEKGIVLM 255 (481)
T ss_pred cccCCCCCHHHHHHHHHHHHhcCCCeeEEEEE-CCCCCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 11222222 23333332 112355666666556677888888887654
No 425
>PRK11761 cysM cysteine synthase B; Provisional
Probab=44.36 E-value=1.6e+02 Score=24.85 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=36.6
Q ss_pred cCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc
Q psy2575 49 IHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP 108 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ 108 (165)
+.+|++|++.|.+.+-..+=..++. |-++.|++.+..|. .-.+.++..|-++..++
T Consensus 60 ~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~----~k~~~~~~~GA~v~~~~ 116 (296)
T PRK11761 60 IKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQ----ERRAAMRAYGAELILVP 116 (296)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHcCCEEEEeC
Confidence 4566889998888776654444444 78888998887662 23444555565555555
No 426
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=44.35 E-value=68 Score=27.55 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhc-------HHHHHH
Q psy2575 74 HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCG-------THAVAL 146 (165)
Q Consensus 74 ~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~G-------T~~lAl 146 (165)
+..|-|++.|+-|..+-+...++|.+.|-++.+|....+..+..+. .=+.++| ||.++.-.- -.|.++
T Consensus 209 ge~favic~~~i~~~~R~~vir~L~~dgkeiv~is~~Q~~hF~GN~-ieL~~~~----n~~v~aMSa~Ay~~lTd~Q~ni 283 (318)
T COG4874 209 GEHFAVICDEAIPEYERRFVIRSLAKDGKEIVSISIEQMNHFCGNI-IELETAD----NQKVIAMSASAYEALTDTQLNI 283 (318)
T ss_pred hhheeeeeccccccHHHHHHHHHHHhCCCeEEEeeHHHHHHhhccc-eEeeccC----CceEEEeehhHHHHhhHHHHHH
Confidence 4679999999999999667799999999999999999998887653 2333332 333333222 245666
Q ss_pred HHhhCC-CcEEE
Q psy2575 147 AAQHYS-IPYPC 157 (165)
Q Consensus 147 ~Ak~~~-vPv~V 157 (165)
++++-. +||-|
T Consensus 284 ie~~~~ivp~~V 295 (318)
T COG4874 284 IETHGKIVPFAV 295 (318)
T ss_pred HHhhCeeeeecc
Confidence 777644 45544
No 427
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=44.30 E-value=2.2e+02 Score=24.95 Aligned_cols=114 Identities=11% Similarity=-0.002 Sum_probs=57.1
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHH--HHHHhhcCCceEEEccc---hH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHEL--AVSLAKSKIQTVLIPDS---AM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~l--a~~L~~~GI~v~~I~ds---av 112 (165)
.+...+..+++..-...+.+.+.+..+...+.... +..-+|++.+ |.+.+... ...+...|+++..+... .+
T Consensus 67 ~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l-~~Gd~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l 143 (398)
T PRK07504 67 VDMFEKRMCALEGAEDARATASGMAAVTAAILCQV-KAGDHVVAAR--ALFGSCRYVVETLLPRYGIESTLVDGLDLDNW 143 (398)
T ss_pred HHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHh-CCCCEEEEcC--CchhHHHHHHHHHHhhcCeEEEEECCCCHHHH
Confidence 33444444445433334444444434433333222 2334666654 55555432 23345679998887532 23
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+..=+++++-..-..+.|.+.. -..++-+|++++++++|
T Consensus 144 ~~ai~~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvv 185 (398)
T PRK07504 144 EKAVRPNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVV 185 (398)
T ss_pred HHhcCcCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEE
Confidence 3333322333332223334454443 45678889999998876
No 428
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.27 E-value=2.2e+02 Score=25.55 Aligned_cols=89 Identities=6% Similarity=0.029 Sum_probs=49.6
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVM 130 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~ 130 (165)
++..|+.+|.+.+=..+....++ +..+|.+.|..+.. ..+.+.+.|+++..-... ...+..+|.|+.++ +|-
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~-~G~~V~~~D~~~~~----~~~~l~~~gi~~~~~~~~--~~~~~~~d~vV~Sp-gi~ 85 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSE-LGCDVVVADDNETA----RHKLIEVTGVADISTAEA--SDQLDSFSLVVTSP-GWR 85 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHH-CCCEEEEECCChHH----HHHHHHhcCcEEEeCCCc--hhHhcCCCEEEeCC-CCC
Confidence 35568888877665544443333 34588898865432 223345678877543221 12346788887765 222
Q ss_pred cCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 131 ANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 131 ~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
+ +.+.-..|++.++|++
T Consensus 86 ~---------~~p~~~~a~~~gi~v~ 102 (473)
T PRK00141 86 P---------DSPLLVDAQSQGLEVI 102 (473)
T ss_pred C---------CCHHHHHHHHCCCcee
Confidence 2 2345556666666665
No 429
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=44.22 E-value=2.5e+02 Score=25.46 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc-c
Q psy2575 35 NPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP-D 109 (165)
Q Consensus 35 ~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~-d 109 (165)
...++.|+++-.. -+...++++|.|.+..+..++.... +..-+|++. .|.+.....+. ...|.++..++ |
T Consensus 188 ~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~-~~Gd~Vli~--~P~y~~y~~~~--~~~g~~~v~~~~~ 262 (517)
T PRK13355 188 FSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALL-DDGDEVLIP--SPDYPLWTACV--NLAGGTAVHYRCD 262 (517)
T ss_pred HHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC-CCCCEEEEc--CCCCcCHHHHH--HHCCCEEEEeecC
Confidence 5678999987643 2455678888887766555544332 344567765 46665544433 33566555443 2
Q ss_pred c---------hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 110 S---------AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 110 s---------av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
. .+...+ ++...+++- .-=-+-|.++.+-=-..++-.|++|++++++
T Consensus 263 ~~~~~~~d~~~l~~~~~~~~k~i~i~-nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~ 319 (517)
T PRK13355 263 EQSEWYPDIDDIRSKITSRTKAIVII-NPNNPTGALYPREVLQQIVDIAREHQLIIFS 319 (517)
T ss_pred cccCCCCCHHHHHHhcCcCceEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 1 122222 233333332 1112335555544446677888899887764
No 430
>PRK06444 prephenate dehydrogenase; Provisional
Probab=44.18 E-value=28 Score=28.02 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=22.0
Q ss_pred CChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEc
Q psy2575 87 ENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIG 125 (165)
Q Consensus 87 ~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllG 125 (165)
+.-|+-+++.|++.|++|+ .+++|.|++.
T Consensus 10 G~mG~~~~~~~~~~g~~v~----------~~~~DlVila 38 (197)
T PRK06444 10 GRLGRVLCSILDDNGLGVY----------IKKADHAFLS 38 (197)
T ss_pred CcHHHHHHHHHHhCCCEEE----------ECCCCEEEEe
Confidence 4568889999999998885 3567777764
No 431
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=44.17 E-value=90 Score=22.28 Aligned_cols=58 Identities=12% Similarity=0.276 Sum_probs=34.5
Q ss_pred ccCCCCEEEEecCCH---HHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccch
Q psy2575 48 HIHSNEIILTLGYSK---IVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSA 111 (165)
Q Consensus 48 ~I~~~~~ILT~g~S~---tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsa 111 (165)
.+..+|.++.+|+|. -+.+.+..|++ +..+++.+-+.. .+++.-.+.|+.+..+|+..
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~-~g~~iI~IT~~~-----~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKE-RGAKIVAITSGG-----KLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH-CCCEEEEEeCCc-----hHHHHHHHcCCcEEECCCCC
Confidence 677889999987664 45555565654 444555332211 25554444677777777643
No 432
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=43.97 E-value=95 Score=27.40 Aligned_cols=34 Identities=9% Similarity=0.231 Sum_probs=24.9
Q ss_pred CEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCC
Q psy2575 53 EIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPE 87 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~ 87 (165)
.+||..+.+.....+++.|++ ..++|+++.+.|.
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~-~G~~vv~~~~~~d 36 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKE-LGIKTVAVHSTAD 36 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHH-cCCeEEEEcChhh
Confidence 478999999888888887765 4577777755443
No 433
>PRK13936 phosphoheptose isomerase; Provisional
Probab=43.95 E-value=1.6e+02 Score=23.26 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCceEEEcc---chHHHhchhCCEEEEcc
Q psy2575 91 HELAVSLAKSKIQTVLIPD---SAMFGLISRVNKIIIGT 126 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~d---sav~~~m~~v~~VllGA 126 (165)
.++++.+++.|+++..|++ +.+......+|.++.-+
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~ 166 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVP 166 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeC
Confidence 4568888999999999998 44444444577776544
No 434
>PRK06348 aspartate aminotransferase; Provisional
Probab=43.93 E-value=2.1e+02 Score=24.52 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhc----ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc--
Q psy2575 35 NPTSDTAPSQACE----HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP-- 108 (165)
Q Consensus 35 ~~~~~~Ia~~a~~----~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~-- 108 (165)
...++.|+++... .+...++++|-|.+..+..++....+ ..-+|++. .|.+.+... .+...|..+..++
T Consensus 69 ~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~-~gd~vlv~--~p~y~~~~~--~~~~~g~~~~~~~~~ 143 (384)
T PRK06348 69 VELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILD-PGDEVIIH--EPYFTPYKD--QIEMVGGKPIILETY 143 (384)
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcC-CCCEEEEe--CCCCcchHH--HHHHcCCEEEEecCC
Confidence 5678889987743 36667788888877655544443333 33366664 466655433 3333465555553
Q ss_pred -c-------chHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 109 -D-------SAMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 109 -d-------sav~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+ ..+...+ ++...+++- .-=-+.|.+....=-..++-.|+++++++++
T Consensus 144 ~~~~~~~d~~~l~~~~~~~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 144 EEDGFQINVKKLEALITSKTKAIILN-SPNNPTGAVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred cCcCCcCCHHHHHHhhCcCccEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 1 1222223 234444442 1112334444433345677788888887653
No 435
>PLN02483 serine palmitoyltransferase
Probab=43.80 E-value=2.1e+02 Score=25.96 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=61.8
Q ss_pred hhHHHhhhhccCCccccC-ChHHHHHHHHHHhcccCCCCEEEE-ecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHH
Q psy2575 16 QESLHKLVVSSDDEATDF-ANPTSDTAPSQACEHIHSNEIILT-LGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHEL 93 (165)
Q Consensus 16 ~~sL~~~~~~~~~~~~d~-~~~~~~~Ia~~a~~~I~~~~~ILT-~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~l 93 (165)
.+.++++-......+..+ .....++.-+..++++..-+.|+. .|++ +....+.... ++.-.|++.+ |.+.+..
T Consensus 125 ~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~-an~~~i~al~-~~Gd~Vi~d~--~~h~s~~- 199 (489)
T PLN02483 125 IESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYA-TNSTIIPALI-GKGGLIISDS--LNHNSIV- 199 (489)
T ss_pred HHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHH-HHHHHHHHhC-CCCCEEEEcc--hhhHHHH-
Confidence 556666655322333333 222333333434445554444443 3433 3333333222 3444555443 5554433
Q ss_pred HHHHhhcCCceEEEccchHH---HhchhC------------CEEEEccceeecCCCeeehhcHH----HHHHHHhhCCCc
Q psy2575 94 AVSLAKSKIQTVLIPDSAMF---GLISRV------------NKIIIGTHTVMANGGLRSVCGTH----AVALAAQHYSIP 154 (165)
Q Consensus 94 a~~L~~~GI~v~~I~dsav~---~~m~~v------------~~VllGAd~V~~nG~vvnk~GT~----~lAl~Ak~~~vP 154 (165)
..++..|+++..++..... ..+++. .++++=. +++.+..|+. .++-+|++++++
T Consensus 200 -~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livv------e~v~s~~G~~~~l~~I~~la~~~~~~ 272 (489)
T PLN02483 200 -NGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIV------EGIYSMEGELCKLPEIVAVCKKYKAY 272 (489)
T ss_pred -HHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEE------CCCCCCCCcccCHHHHHHHHHHcCCE
Confidence 3345678888887643222 222211 1333333 3444444433 377789999988
Q ss_pred EEE
Q psy2575 155 YPC 157 (165)
Q Consensus 155 v~V 157 (165)
+++
T Consensus 273 liv 275 (489)
T PLN02483 273 VYL 275 (489)
T ss_pred EEE
Confidence 876
No 436
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.67 E-value=2.1e+02 Score=24.55 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=31.1
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcC
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSK 101 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~G 101 (165)
.|..+.+.|+|.+|=+-|.....++.-+|.++.++-. ++...++++.
T Consensus 158 ~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~----~l~~~~~~AD 204 (285)
T PRK10792 158 YGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK----NLRHHVRNAD 204 (285)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC----CHHHHHhhCC
Confidence 4888888999988877666555556678888876532 2444444444
No 437
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=43.64 E-value=1.6e+02 Score=24.56 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=41.8
Q ss_pred cCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 49 IHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
+.+|++|.+.|.+.+-..+=..|+. |-+++|++.++.|.. ..+.++..|-++++++..
T Consensus 54 ~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~----k~~~~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 54 LKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIE----RRKLLKAYGAELVLTPGA 112 (298)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHH----HHHHHHHcCCEEEEECCC
Confidence 4567889888888766655444554 888999999887632 356677888888888754
No 438
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=43.57 E-value=48 Score=27.65 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCEEEEecCCHHHHHHHHHHHh-----CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQ-----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~-----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
..-+++++.+++++.|+....+ -.+..+++. |.+.++.+.+.|++...+.+.
T Consensus 190 ~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~i-------s~rtA~~a~~~G~~~v~vA~~ 246 (266)
T PRK08811 190 PRSVLALSSAEALTLILQQLPDALRRALQQRPVVAS-------SDRLLDAAHAAGFIHVMRAAG 246 (266)
T ss_pred CCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEe-------CHHHHHHHHHcCCCceeeCCC
Confidence 4568889989999998765432 134455555 778999999999988877763
No 439
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=43.54 E-value=1.4e+02 Score=25.60 Aligned_cols=50 Identities=8% Similarity=-0.079 Sum_probs=35.1
Q ss_pred EEEEecCCHHHHHHHHHHHh--CCce--E-EEEecCCCCChHHHHHHHHhhcCCc
Q psy2575 54 IILTLGYSKIVELFLKNAAQ--HRKF--Q-CIVMENSPENKGHELAVSLAKSKIQ 103 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~--~~~f--~-ViV~Es~P~~eG~~la~~L~~~GI~ 103 (165)
+-|+..|++.+.+.+..+++ +.+. + ||+.=.-|.+|-+.=.+-++..|-+
T Consensus 127 ~~m~~~y~~~Lr~~l~~~a~~~~~~~~~~GvYv~~~GPrfET~AEir~~r~~GaD 181 (289)
T PRK08931 127 VSMAHPVCPRLGDRLAAAARAEGITVHRGGTYLCMEGPQFSTLAESKLYRSWGCD 181 (289)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCeEecceEEEEeeCCCCCCHHHHHHHHHcCCC
Confidence 44666899988888877766 3332 2 8888889998876666666666533
No 440
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=43.31 E-value=1.4e+02 Score=24.94 Aligned_cols=57 Identities=9% Similarity=0.039 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHh----CCceEEEEecCCC-CChHHHHHHHHhhcCCceEEEccchHHHhc
Q psy2575 60 YSKIVELFLKNAAQ----HRKFQCIVMENSP-ENKGHELAVSLAKSKIQTVLIPDSAMFGLI 116 (165)
Q Consensus 60 ~S~tV~~~L~~A~~----~~~f~ViV~Es~P-~~eG~~la~~L~~~GI~v~~I~dsav~~~m 116 (165)
.+.+.+..+..|++ +.++-|=|.=+.. +..|.+.++.|++.||+|....--++...+
T Consensus 66 ~~~d~~~m~~eA~~l~~~~~nv~VKIP~T~~~G~~~l~ai~~L~~~GI~vn~T~vfs~~Qa~ 127 (236)
T TIGR02134 66 FADDLDEMEKEARYIASWGNNVNVKIPVTNTKGESTGPLIQKLSADGITLNVTALTTIEQVE 127 (236)
T ss_pred ecCCHHHHHHHHHHHHhcCCCeEEEECCcCcccchHHHHHHHHHHCCCcEEeehcCCHHHHH
Confidence 45667888888876 4444443555554 345689999999999998866655444443
No 441
>PRK10637 cysG siroheme synthase; Provisional
Probab=43.10 E-value=1.8e+02 Score=26.23 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=57.0
Q ss_pred CCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcccee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTV 129 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V 129 (165)
.|..|+++|.+....+=+....+ +.+++|+-.+=.|. + +.|.+.| +++++...--...+..++.|+...|-=
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~-----~-~~l~~~~-~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQ-----F-TAWADAG-MLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHH-----H-HHHHhCC-CEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 47899999999876553333333 66666663332211 2 3344444 567777655566677788777775432
Q ss_pred ecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 130 MANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 130 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
- =...++..|+..+++|.++
T Consensus 84 ~---------~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 A---------VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred H---------HhHHHHHHHHHcCcEEEEC
Confidence 1 2246888899999999876
No 442
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=43.09 E-value=95 Score=20.38 Aligned_cols=51 Identities=14% Similarity=0.084 Sum_probs=28.3
Q ss_pred EEEecCCHHHHHHHHHHHh-CCceEEEEecCCCC-C----hHHHHHHHHhhcCCceE
Q psy2575 55 ILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPE-N----KGHELAVSLAKSKIQTV 105 (165)
Q Consensus 55 ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~-~----eG~~la~~L~~~GI~v~ 105 (165)
|+.+|.+.+-.++-...++ +.+.+++....++. . -...+.+.|++.||++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 6677877766555554444 54444444433433 1 13445677888876653
No 443
>PLN02686 cinnamoyl-CoA reductase
Probab=43.08 E-value=2.2e+02 Score=24.50 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=59.0
Q ss_pred ccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhc--------CCceEE--Ecc-chHHHhc
Q psy2575 48 HIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKS--------KIQTVL--IPD-SAMFGLI 116 (165)
Q Consensus 48 ~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~--------GI~v~~--I~d-sav~~~m 116 (165)
....+.+||+.|.+.-+=..|....-.+..+|+++...+. .-..+ +.|... ++.... +.| ..+..++
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~-~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQE-DKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 4456789999998876644444333334567765432221 11122 233211 232221 122 2355667
Q ss_pred hhCCEEEEccceeecCCC---------eeehhcHHHHHHHHhhC-CCcEEEEe
Q psy2575 117 SRVNKIIIGTHTVMANGG---------LRSVCGTHAVALAAQHY-SIPYPCTF 159 (165)
Q Consensus 117 ~~v~~VllGAd~V~~nG~---------vvnk~GT~~lAl~Ak~~-~vPv~V~~ 159 (165)
..+|.|+ -.+++..+++ -+|..||..+.-+|+.. +++=+|..
T Consensus 127 ~~~d~V~-hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~ 178 (367)
T PLN02686 127 DGCAGVF-HTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFT 178 (367)
T ss_pred HhccEEE-ecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEe
Confidence 7888887 5555544433 24677899999988875 67744443
No 444
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=42.97 E-value=46 Score=30.48 Aligned_cols=75 Identities=8% Similarity=0.123 Sum_probs=36.4
Q ss_pred EEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHH-HHHHHhhcCCceEEEccchHHHhch--hCCEEEEcccee
Q psy2575 54 IILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHE-LAVSLAKSKIQTVLIPDSAMFGLIS--RVNKIIIGTHTV 129 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~-la~~L~~~GI~v~~I~dsav~~~m~--~v~~VllGAd~V 129 (165)
.||..|.+.-...+...+++ .+..+||++.+.+ +-|.. ++......-+.........+..+.+ ++|.|+.|++.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 68888888553333334443 2468999886633 22322 1222111101111111223333433 388888887753
No 445
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=42.78 E-value=46 Score=26.97 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=19.4
Q ss_pred HHHHHhhcCCceEEEccchHHHhchhCCEEEEc
Q psy2575 93 LAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIG 125 (165)
Q Consensus 93 la~~L~~~GI~v~~I~dsav~~~m~~v~~VllG 125 (165)
+++.+++.|+++..|++..-..+-+.+|.+|.-
T Consensus 66 ~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~ 98 (268)
T TIGR00393 66 LIPHLKRLSHKIIAFTGSPNSSLARAADYVLDI 98 (268)
T ss_pred HHHHHHHcCCcEEEEECCCCCcccccCCEEEEc
Confidence 455555566666666665555555566666643
No 446
>KOG0387|consensus
Probab=42.76 E-value=1.4e+02 Score=29.71 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=61.4
Q ss_pred HHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEec-CCCCChHHHHHHHHhh-cCCceEEEccc--hH
Q psy2575 38 SDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVME-NSPENKGHELAVSLAK-SKIQTVLIPDS--AM 112 (165)
Q Consensus 38 ~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~E-s~P~~eG~~la~~L~~-~GI~v~~I~ds--av 112 (165)
.+.++..-..++..|+.||.+++|++++.+|..-.. -+.++-.=++ +-|-..=..++.+..+ ..++|-+++-- .+
T Consensus 532 m~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGL 611 (923)
T KOG0387|consen 532 MKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGL 611 (923)
T ss_pred HHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccc
Confidence 566777788899999999999999999888876655 3455544444 3343333467888884 67888888743 34
Q ss_pred HHhchhCCEEEE
Q psy2575 113 FGLISRVNKIII 124 (165)
Q Consensus 113 ~~~m~~v~~Vll 124 (165)
+.-+..+|+||+
T Consensus 612 GlNLTgAnRVII 623 (923)
T KOG0387|consen 612 GLNLTGANRVII 623 (923)
T ss_pred ccccccCceEEE
Confidence 555667777775
No 447
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.73 E-value=79 Score=27.16 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=27.1
Q ss_pred ChHHHHHHHHhhcCCceEEEccc--hHHHhchhCCEEEEcc-------ceeecCCCeeehhcH
Q psy2575 88 NKGHELAVSLAKSKIQTVLIPDS--AMFGLISRVNKIIIGT-------HTVMANGGLRSVCGT 141 (165)
Q Consensus 88 ~eG~~la~~L~~~GI~v~~I~ds--av~~~m~~v~~VllGA-------d~V~~nG~vvnk~GT 141 (165)
.=|+-++.-|.+.|--||..... -+..+.+++|.|+.++ .-.+..|.++-.+|+
T Consensus 170 iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGi 232 (284)
T PRK14177 170 ILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGY 232 (284)
T ss_pred cchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecC
Confidence 34555555555555444443321 1344566677766432 113345666666665
No 448
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=42.67 E-value=1.7e+02 Score=23.28 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=49.6
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceee
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVM 130 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~ 130 (165)
.|..||++|.+.....-.....+ ...+|.|+. |.. ...+. .+.+.| .+++....--...+..+|.|+...+.=
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~-~ga~V~VIs--~~~-~~~l~-~l~~~~-~i~~~~~~~~~~~l~~adlViaaT~d~- 81 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK-YGAHIVVIS--PEL-TENLV-KLVEEG-KIRWKQKEFEPSDIVDAFLVIAATNDP- 81 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEc--CCC-CHHHH-HHHhCC-CEEEEecCCChhhcCCceEEEEcCCCH-
Confidence 47799999999876665555444 224555554 322 11222 233332 345554433344567777777654321
Q ss_pred cCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 131 ANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 131 ~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
-+| ..++..|++ ++||.++.
T Consensus 82 ----elN----~~i~~~a~~-~~lvn~~d 101 (202)
T PRK06718 82 ----RVN----EQVKEDLPE-NALFNVIT 101 (202)
T ss_pred ----HHH----HHHHHHHHh-CCcEEECC
Confidence 112 345666644 67877753
No 449
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=42.64 E-value=2.4e+02 Score=24.84 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=50.9
Q ss_pred CceEEEEecCCCC--ChHHHHHHHHhhcCCceEEEcc-------chHHHhchhCCEEEEccceeecCCCeeehhcHHHHH
Q psy2575 75 RKFQCIVMENSPE--NKGHELAVSLAKSKIQTVLIPD-------SAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVA 145 (165)
Q Consensus 75 ~~f~ViV~Es~P~--~eG~~la~~L~~~GI~v~~I~d-------sav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lA 145 (165)
+++-++.--+.|. .+=+++-+++++.|+.+....- .++..+..++|.+++-.|-.. .. +...+.
T Consensus 160 k~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i------~s-~~~~l~ 232 (322)
T COG2984 160 KSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLI------VS-AIESLL 232 (322)
T ss_pred eeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHH------HH-HHHHHH
Confidence 5566666544443 3445677778889988775543 223344467898888876533 33 556677
Q ss_pred HHHhhCCCcEEEE
Q psy2575 146 LAAQHYSIPYPCT 158 (165)
Q Consensus 146 l~Ak~~~vPv~V~ 158 (165)
..|...++|+|.-
T Consensus 233 ~~a~~~kiPli~s 245 (322)
T COG2984 233 QVANKAKIPLIAS 245 (322)
T ss_pred HHHHHhCCCeecC
Confidence 8899999999864
No 450
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=42.61 E-value=2.1e+02 Score=24.21 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=57.0
Q ss_pred HHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh-C-CceEEE----EecCCCCCh--------H----HHHHHHHhhcC-
Q psy2575 41 APSQACEHIHSNEIILTLGYSKIVELFLKNAAQ-H-RKFQCI----VMENSPENK--------G----HELAVSLAKSK- 101 (165)
Q Consensus 41 Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~-~~f~Vi----V~Es~P~~e--------G----~~la~~L~~~G- 101 (165)
+...+.+.+++ ..|+++|-+..=-.......+ | .+++++ |.++.-+++ | ..++++|.+..
T Consensus 20 ~G~e~~~kL~~-s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP 98 (268)
T PRK15116 20 YGEKALQLFAD-AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINP 98 (268)
T ss_pred hCHHHHHHhcC-CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCC
Confidence 44555556654 467777766433333333333 4 344433 111111111 1 24566676644
Q ss_pred -CceEEEcc----chHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 102 -IQTVLIPD----SAMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 102 -I~v~~I~d----sav~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
++++.+.+ ..+..++ .++|.|+...|.+-. -..+...|+.+++||+.+
T Consensus 99 ~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~---------k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 99 ECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRP---------KAALIAYCRRNKIPLVTT 152 (268)
T ss_pred CcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEE
Confidence 44554432 2233344 468888887775432 235777889999999976
No 451
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=42.52 E-value=1.2e+02 Score=25.72 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=42.6
Q ss_pred CCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc
Q psy2575 51 SNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT 126 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA 126 (165)
++.+|+.+|.+..-......+......+|++++..|. ....+++.+ |.. .++.......++++|.|+...
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~-ra~~la~~~---g~~--~~~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYE-RAEELAKEL---GGN--AVPLDELLELLNEADVVISAT 246 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH-HHHHHHHHc---CCe--EEeHHHHHHHHhcCCEEEECC
Confidence 5899999999877666666555422345777754432 223455554 432 333234556677888888764
No 452
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=42.52 E-value=2e+02 Score=24.25 Aligned_cols=115 Identities=8% Similarity=-0.006 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEc---cch
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIP---DSA 111 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~---dsa 111 (165)
...++.+.++..++....+.|++.+.+......+....+ +.-.|++. .|.+.+...+.. -.|+++..++ ...
T Consensus 77 ~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~-~gd~vi~~--~~~~~~~~~~~~--~~g~~~~~~~~~d~~~ 151 (385)
T TIGR01825 77 LRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLR-KGDIVLSD--ELNHASIIDGLR--LTKATKKIYKHADMDD 151 (385)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCC-CCCEEEEE--ccccHHHHHHHH--hcCCceEEeCCCCHHH
Confidence 455777777777776554545544445454444443333 33344443 355554433323 3465554433 222
Q ss_pred HHHhchh----CCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 112 MFGLISR----VNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 112 v~~~m~~----v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
+...+++ -+++++ ...+....|.+.. -..++-+|++|++++++
T Consensus 152 l~~~l~~~~~~~~~~v~-~~~v~~~tG~~~~--~~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 152 LDRVLRENPSYGKKLIV-TDGVFSMDGDVAP--LPEIVELAERYGAVTYV 198 (385)
T ss_pred HHHHHHhhccCCCeEEE-EecCCcCCCCccC--HHHHHHHHHHhCCEEEE
Confidence 3333332 133333 2223332233333 25688889999998875
No 453
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=42.46 E-value=1.4e+02 Score=23.49 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=28.5
Q ss_pred CCCCEEEEecCCHHH-HHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcC
Q psy2575 50 HSNEIILTLGYSKIV-ELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSK 101 (165)
Q Consensus 50 ~~~~~ILT~g~S~tV-~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~G 101 (165)
..+.+|++.|.+.-+ ..+.+...+ +..+|+++..++. ....+...|.+.+
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~-~G~~Vi~~~r~~~-~~~~~~~~l~~~~ 60 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYAR-HGATVILLGRTEE-KLEAVYDEIEAAG 60 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHH-CCCcEEEEeCCHH-HHHHHHHHHHhcC
Confidence 356677777766655 333333333 3468888776653 3345666676544
No 454
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=42.42 E-value=2e+02 Score=24.52 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=21.9
Q ss_pred EEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 121 KIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 121 ~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+++-.+.+....|.+.. -..|+-+|++++++++|
T Consensus 144 ~~~v~v~~v~s~~G~i~p--l~eI~~l~~~~~~~liv 178 (370)
T PRK05937 144 RIFIFVCSVYSFKGTLAP--LEQIIALSKKYHAHLIV 178 (370)
T ss_pred cEEEEEecCCCCCCCccC--HHHHHHHHHHcCCEEEE
Confidence 334444555554444444 33678889999998876
No 455
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=42.39 E-value=78 Score=22.35 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCceEEEccchHHHhchhCCEEEE
Q psy2575 92 ELAVSLAKSKIQTVLIPDSAMFGLISRVNKIII 124 (165)
Q Consensus 92 ~la~~L~~~GI~v~~I~dsav~~~m~~v~~Vll 124 (165)
+.++.+++.|.++..|+++.-..+-+.+|.++.
T Consensus 64 ~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~ 96 (126)
T cd05008 64 AALRLAKEKGAKTVAITNVVGSTLAREADYVLY 96 (126)
T ss_pred HHHHHHHHcCCeEEEEECCCCChHHHhCCEEEE
Confidence 345555556666666666544444455666664
No 456
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.36 E-value=1.1e+02 Score=24.82 Aligned_cols=76 Identities=22% Similarity=0.184 Sum_probs=47.1
Q ss_pred EecCCCCChHHHHHHHHhhcCCceEEE---ccchHHH---hchhCCEEEEccceeecC-----------CCeeehhcHHH
Q psy2575 81 VMENSPENKGHELAVSLAKSKIQTVLI---PDSAMFG---LISRVNKIIIGTHTVMAN-----------GGLRSVCGTHA 143 (165)
Q Consensus 81 V~Es~P~~eG~~la~~L~~~GI~v~~I---~dsav~~---~m~~v~~VllGAd~V~~n-----------G~vvnk~GT~~ 143 (165)
|+-..+..+...+++.|.+.|+++.-| .+.+... +-++..-+++||++|+.. ..++...-...
T Consensus 20 V~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~ 99 (212)
T PRK05718 20 VIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPP 99 (212)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHH
Confidence 334455567788899999988764444 4443332 223455688898888753 12344444456
Q ss_pred HHHHHhhCCCcEE
Q psy2575 144 VALAAQHYSIPYP 156 (165)
Q Consensus 144 lAl~Ak~~~vPv~ 156 (165)
+.-.|+++++|++
T Consensus 100 vi~~a~~~~i~~i 112 (212)
T PRK05718 100 LLKAAQEGPIPLI 112 (212)
T ss_pred HHHHHHHcCCCEe
Confidence 6677788888877
No 457
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.33 E-value=75 Score=24.28 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=53.8
Q ss_pred HHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCE
Q psy2575 42 PSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNK 121 (165)
Q Consensus 42 a~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~ 121 (165)
.+.+.+.|.+...|..+|.+..- .+ ...+..+|...|+++.++.|.. ...+.+=|.
T Consensus 20 ~~~~~~~l~~a~~I~i~G~G~S~--~~---------------------A~~~~~~l~~~g~~~~~~~~~~-~~~~~~~Dv 75 (179)
T TIGR03127 20 LDKLADKIIKAKRIFVAGAGRSG--LV---------------------GKAFAMRLMHLGFNVYVVGETT-TPSIKKGDL 75 (179)
T ss_pred HHHHHHHHHhCCEEEEEecCHHH--HH---------------------HHHHHHHHHhCCCeEEEeCCcc-cCCCCCCCE
Confidence 33455566667788888766432 11 1234556666777777777643 223444555
Q ss_pred EEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 122 IIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 122 VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
+|+-+.+ | ...-+..++..||+.++|++.++..
T Consensus 76 ~I~iS~s----G---~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 76 LIAISGS----G---ETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred EEEEeCC----C---CcHHHHHHHHHHHHCCCeEEEEECC
Confidence 5544321 2 2334567788899999999998753
No 458
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=42.32 E-value=2.1e+02 Score=24.05 Aligned_cols=109 Identities=8% Similarity=0.010 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHH
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFG 114 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~ 114 (165)
...++.|+++- ....+++|.|.+..+..++ .+ .+.-+|++. .|.+.+.. ..+...|+++..++...+..
T Consensus 52 ~~Lr~~ia~~~----~~~~I~it~Gs~~al~~~~-~~--~~gd~v~v~--~P~y~~~~--~~~~~~g~~~~~v~~~~~~~ 120 (330)
T PRK05664 52 DGLEAAARAYY----GAPQLLPVAGSQAAIQALP-RL--RAPGRVGVL--SPCYAEHA--HAWRRAGHQVRELDEAEVEA 120 (330)
T ss_pred HHHHHHHHHHh----CCCCEEECcCHHHHHHHHH-Hc--cCCCEEEEc--CCChHHHH--HHHHHcCCeEEEechhhHhh
Confidence 45677777654 3356777777665544433 23 233455554 36665433 34446788988888766666
Q ss_pred hchhCCEEEEc-cceeecCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 115 LISRVNKIIIG-THTVMANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 115 ~m~~v~~VllG-Ad~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
.+++.+.+++- .. -+.|.++...=-..++-.|+++++.++
T Consensus 121 ~~~~~~~v~l~nP~--NPTG~~~s~~~l~~l~~~~~~~~~~iI 161 (330)
T PRK05664 121 ALDSLDVLVVVNPN--NPTGRRFDPARLLAWHARLAARGGWLV 161 (330)
T ss_pred hhcCCCEEEEeCCc--CCCCCccCHHHHHHHHHHHHhcCCEEE
Confidence 66666554433 32 455666665555566666777777544
No 459
>PRK06823 ornithine cyclodeaminase; Validated
Probab=42.28 E-value=2.2e+02 Score=24.41 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=60.6
Q ss_pred HHHHHhccc--CCCCEEEEecCCHHHHHHHHHHHhCCce-EEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhch
Q psy2575 41 APSQACEHI--HSNEIILTLGYSKIVELFLKNAAQHRKF-QCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS 117 (165)
Q Consensus 41 Ia~~a~~~I--~~~~~ILT~g~S~tV~~~L~~A~~~~~f-~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~ 117 (165)
...-+.+++ .+-.++..+|.+...+.-+.....-+++ +|.|-.-.|. .-..++..+++.|++++...+ ......
T Consensus 115 ~sala~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~-~a~~~~~~~~~~~~~v~~~~~--~~~av~ 191 (315)
T PRK06823 115 AGRIVARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSET-ALEEYRQYAQALGFAVNTTLD--AAEVAH 191 (315)
T ss_pred HHHHHHHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHH-HHHHHHHHHHhcCCcEEEECC--HHHHhc
Confidence 334456666 3567888899886665544433332333 4555543332 334677778877888876543 455567
Q ss_pred hCCEEEE---------ccceeecCCCeeehhcHHH
Q psy2575 118 RVNKIII---------GTHTVMANGGLRSVCGTHA 143 (165)
Q Consensus 118 ~v~~Vll---------GAd~V~~nG~vvnk~GT~~ 143 (165)
.+|.|+. -++ .+..|..++-+|++.
T Consensus 192 ~ADIV~taT~s~~P~~~~~-~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 192 AANLIVTTTPSREPLLQAE-DIQPGTHITAVGADS 225 (315)
T ss_pred CCCEEEEecCCCCceeCHH-HcCCCcEEEecCCCC
Confidence 8888874 222 235788999998753
No 460
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=42.24 E-value=1.9e+02 Score=27.34 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=41.8
Q ss_pred HHHHHHHhhcCCceEEEccchH--------HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhh-CCCcEEEEee
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAM--------FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQH-YSIPYPCTFL 160 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav--------~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~-~~vPv~V~~~ 160 (165)
.+.|+.|.+.||++++|....+ ....++..++++ ..++....-.|+...+.++.. ...|+.-++-
T Consensus 511 l~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~k~~~vvt-----vEE~~~~GGlGs~v~~~l~~~~~~~~v~~ig~ 584 (617)
T TIGR00204 511 LEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEKLVT-----VEENAIMGGAGSAVLEFLMDQNKLVPVKRLGI 584 (617)
T ss_pred HHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHhhcCeEEE-----EECCCCccChHHHHHHHHHhcCCCCCeEEEeC
Confidence 4456777778888887765433 233344545443 455666666888888888887 4678776653
No 461
>PRK06703 flavodoxin; Provisional
Probab=42.20 E-value=66 Score=23.89 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=36.2
Q ss_pred HHHHHhhcCCceEEEccchH-HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHH-hhCCCcEEEEe
Q psy2575 93 LAVSLAKSKIQTVLIPDSAM-FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAA-QHYSIPYPCTF 159 (165)
Q Consensus 93 la~~L~~~GI~v~~I~dsav-~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~A-k~~~vPv~V~~ 159 (165)
+++.|.+.|+++++...... ..-+.+.|.+++|+ ..+.+|..-..+..+.--+.. +-.++|+.+++
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigs-pt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg 89 (151)
T PRK06703 22 IKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGS-YTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFG 89 (151)
T ss_pred HHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEE-CCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEc
Confidence 35556667888776654332 23467889999998 334455443334433211211 22457776664
No 462
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=42.19 E-value=2.2e+02 Score=24.27 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcccC--CCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHH-HHHHhh----------cC
Q psy2575 36 PTSDTAPSQACEHIH--SNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHEL-AVSLAK----------SK 101 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~--~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~l-a~~L~~----------~G 101 (165)
......++...++.. ...++++-|.+..++..+..+.. ..+-+|++.+ |.+.|... +..+.. .+
T Consensus 79 ~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~--~~yhg~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T cd00610 79 EPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFE--GAYHGRTLGALSLTGSKKYRGGFGPLL 156 (413)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEEC--CCcCCccHHHHHhcCCccccccCCCCC
Confidence 344555555566665 44666667777777777776643 2344666665 33444322 222221 12
Q ss_pred CceEEEccc--------------hHHHhchh--CCEEEEccceeecCCC-eeehhc-HHHHHHHHhhCCCcEEE
Q psy2575 102 IQTVLIPDS--------------AMFGLISR--VNKIIIGTHTVMANGG-LRSVCG-THAVALAAQHYSIPYPC 157 (165)
Q Consensus 102 I~v~~I~ds--------------av~~~m~~--v~~VllGAd~V~~nG~-vvnk~G-T~~lAl~Ak~~~vPv~V 157 (165)
.++..++.. .+...+.+ -+..++=.+-+...+| +..... -..+.-+|++|++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 230 (413)
T cd00610 157 PGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIA 230 (413)
T ss_pred CCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 345555543 22223333 1222222344666544 343333 56677889999998875
No 463
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=42.13 E-value=30 Score=27.24 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=36.5
Q ss_pred CEEEEecCCHHHHHHHHHHHh----CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 53 EIILTLGYSKIVELFLKNAAQ----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 53 ~~ILT~g~S~tV~~~L~~A~~----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
--++++..+++++.|+....+ -....+++. |...++.|.+.|+++.+++..
T Consensus 169 ~~~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~i-------g~~ta~~l~~~g~~~~~va~~ 223 (231)
T PF02602_consen 169 IDAVVFTSPSAVRAFLELLKKNGALLKRVPIVAI-------GPRTAKALRELGFKVDIVAER 223 (231)
T ss_dssp TSEEEESSHHHHHHHHHHSSGHHHHHTTSEEEES-------SHHHHHHHHHTT-SCSEEESS
T ss_pred CCEEEECCHHHHHHHHHHhHhhhhhhhCCEEEEE-------CHHHHHHHHHcCCCceEECCC
Confidence 345555556688888887653 356677766 889999999999999777653
No 464
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=41.93 E-value=46 Score=26.31 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCceEEEccchHHHhchhCCEEEEcc-ceeecCCCeeehhcHHHHHHH--HhhCCCcEEEEe
Q psy2575 91 HELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGT-HTVMANGGLRSVCGTHAVALA--AQHYSIPYPCTF 159 (165)
Q Consensus 91 ~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGA-d~V~~nG~vvnk~GT~~lAl~--Ak~~~vPv~V~~ 159 (165)
+.+.+.|++.|.++.++.+.. -+.++|.+++.- .+.......+...|- ..++. +...++|++-+|
T Consensus 13 ~~v~~~l~~~g~~~~~~~~~~---~l~~~d~lilPG~g~~~~~~~~l~~~~~-~~~l~~~~~~~~~pvlGiC 80 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAKNPK---DLQKADKLLLPGVGSFKEAMKNLKELGF-IEALKEQVLVQKKPILGIC 80 (201)
T ss_pred HHHHHHHHHCCCeEEEECCHH---HHcCCCEEEECCCCchHHHHHHHHHcCc-HHHHHHHHHhCCCcEEEEC
Confidence 567888888888888887653 235677766631 111111111222232 12222 234689999776
No 465
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=41.84 E-value=1.2e+02 Score=22.17 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=13.8
Q ss_pred EEEEecCCCCChHH---HHHHHHhhcCC-ceEEEcc
Q psy2575 78 QCIVMENSPENKGH---ELAVSLAKSKI-QTVLIPD 109 (165)
Q Consensus 78 ~ViV~Es~P~~eG~---~la~~L~~~GI-~v~~I~d 109 (165)
.-++.|........ ...+.+.+.|+ ++.++++
T Consensus 68 ~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVTs 103 (150)
T cd06259 68 EAILLEDRSTNTYENARFSAELLRERGIRSVLLVTS 103 (150)
T ss_pred HHeeecCCCCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 34455555543222 22444445554 3444443
No 466
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=41.81 E-value=56 Score=23.90 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=19.0
Q ss_pred hhCCEEEEcccee-----ecCCCeeehhcHHHHHHHHhhCCCcEEEE
Q psy2575 117 SRVNKIIIGTHTV-----MANGGLRSVCGTHAVALAAQHYSIPYPCT 158 (165)
Q Consensus 117 ~~v~~VllGAd~V-----~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 158 (165)
+.+|.+++..-+. +++|-.=| =-..++..+-..++|++++
T Consensus 72 ~~~D~~vVaPaT~NtlaKiA~GiaD~--l~~~~~~~~l~~~~pvvi~ 116 (129)
T PF02441_consen 72 RWADAMVVAPATANTLAKIANGIADN--LLTRVALAALKEGKPVVIA 116 (129)
T ss_dssp HTESEEEEEEEEHHHHHHHHTT--SS--HHHHHHHHHHHTTCGEEEE
T ss_pred ccCCEEEEcccCHHHHHHHHhCCcch--HHHHHHHHHccCCCCeEEE
Confidence 4578877765432 12331111 1122334444458997765
No 467
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=41.77 E-value=1.6e+02 Score=26.64 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=41.9
Q ss_pred cccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEE
Q psy2575 47 EHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIII 124 (165)
Q Consensus 47 ~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~Vll 124 (165)
.....|++|+++|++..=......++. ...+|+++|..|... ..|+ ..|..+... ...++.+|.|+-
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~R~--~~A~---~~G~~~~~~-----~e~v~~aDVVI~ 263 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPICA--LQAA---MEGYEVMTM-----EEAVKEGDIFVT 263 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChhhH--HHHH---hcCCEEccH-----HHHHcCCCEEEE
Confidence 345679999999999765666665544 334799998887642 2333 357644321 233456777763
No 468
>PLN02509 cystathionine beta-lyase
Probab=41.62 E-value=2.7e+02 Score=25.29 Aligned_cols=114 Identities=9% Similarity=-0.004 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHH-HHH-HHHhhcCCceEEEccchHH-
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGH-ELA-VSLAKSKIQTVLIPDSAMF- 113 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~-~la-~~L~~~GI~v~~I~dsav~- 113 (165)
..+.+.+..+++......+++-| +......+.... +..-+|++. .|.+.+. .+. ..+...|+++..+......
T Consensus 134 t~~aLE~~lA~leg~e~ai~~~S-G~aAi~~il~ll-~~GD~VI~~--~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~ 209 (464)
T PLN02509 134 TRDALESLLAKLDKADRAFCFTS-GMAALSAVTHLI-KNGEEIVAG--DDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDE 209 (464)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCc-HHHHHHHHHHHh-CCCCEEEEc--CCchhhHHHHHHHHHHHCCeEEEEeCCCCHHH
Confidence 35566665566554334444433 333333333332 334466664 4555553 333 4467789998887543222
Q ss_pred --HhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 114 --GLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 114 --~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
..+..=+++++=..-.-+.|.+ .=--.++-+|++++++++|
T Consensus 210 l~~ai~~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 210 VAAAIGPQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred HHHhCCcCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEE
Confidence 2222212322222222233332 1123467789999999886
No 469
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=41.57 E-value=1.5e+02 Score=28.79 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=39.8
Q ss_pred hHHHHHHHHhhcCCceEEEccchH--------HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhC----CCcEE
Q psy2575 89 KGHELAVSLAKSKIQTVLIPDSAM--------FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHY----SIPYP 156 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~dsav--------~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~----~vPv~ 156 (165)
+..+.|+.|.+.||++++|....+ ....++...|+. .++|.+ .-.|+...+.++... .+||.
T Consensus 581 ~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~~vVT-----vEE~~~-GG~Gs~Va~~l~~~~~~~~~~~v~ 654 (701)
T PLN02225 581 NCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLIT-----VEEGCV-GGFGSHVAQFIALDGQLDGNIKWR 654 (701)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcCeEEE-----EcCCCC-CchHHHHHHHHHhcCCCcCCCcEE
Confidence 344456677777888777754433 334456666654 445554 668888888888773 46765
Q ss_pred EE
Q psy2575 157 CT 158 (165)
Q Consensus 157 V~ 158 (165)
.+
T Consensus 655 ~i 656 (701)
T PLN02225 655 PI 656 (701)
T ss_pred EE
Confidence 43
No 470
>PRK07671 cystathionine beta-lyase; Provisional
Probab=41.54 E-value=2.4e+02 Score=24.54 Aligned_cols=114 Identities=10% Similarity=0.011 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChH-H-HHHHHHhhcCCceEEEccc---
Q psy2575 36 PTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKG-H-ELAVSLAKSKIQTVLIPDS--- 110 (165)
Q Consensus 36 ~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG-~-~la~~L~~~GI~v~~I~ds--- 110 (165)
...+...+..+++......++ ++.+......+.... ++.-+|++.+ |.+.| . .+++.+...|+++..+...
T Consensus 50 p~~~~Le~~lA~l~g~~~~~~-~~sG~aai~~~~~~l-~~Gd~Viv~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 125 (377)
T PRK07671 50 PTRAALEELIAVLEGGHAGFA-FGSGMAAITAVMMLF-SSGDHVILTD--DVYGGTYRVMTKVLNRFGIEHTFVDTSNLE 125 (377)
T ss_pred hHHHHHHHHHHHHhCCCceEE-eCCHHHHHHHHHHHh-CCCCEEEECC--CccchHHHHHHHHHhcCCeEEEEECCCCHH
Confidence 334455555555554334444 444443333333232 2344677654 55543 2 3355677889999988743
Q ss_pred hHHHhch-hCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 AMFGLIS-RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 av~~~m~-~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+...+. +...|++- .---+.|.+ .---.++-+|+++++++++
T Consensus 126 ~l~~ai~~~tklV~le-~P~NPtg~~---~dl~~I~~la~~~g~~lvv 169 (377)
T PRK07671 126 EVEEAIRPNTKAIYVE-TPTNPLLKI---TDIKKISTIAKEKGLLTIV 169 (377)
T ss_pred HHHHhcCCCCeEEEEE-CCCCCCCcc---cCHHHHHHHHHHcCCEEEE
Confidence 2333332 33334431 111122222 2234578889999988876
No 471
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=41.52 E-value=96 Score=25.57 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=31.6
Q ss_pred CCceEEEEecCCCCCh--HHHHHHHHhhcCCceEEEc-cchHHHhchh
Q psy2575 74 HRKFQCIVMENSPENK--GHELAVSLAKSKIQTVLIP-DSAMFGLISR 118 (165)
Q Consensus 74 ~~~f~ViV~Es~P~~e--G~~la~~L~~~GI~v~~I~-dsav~~~m~~ 118 (165)
+++ -|++....|... |..+.+.|.+.|++++++| -|++.++..+
T Consensus 80 g~~-Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~ 126 (257)
T PRK15473 80 GKT-VVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAE 126 (257)
T ss_pred CCe-EEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHH
Confidence 443 455568888754 4688999999999999999 5556555543
No 472
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=41.44 E-value=1.7e+02 Score=26.12 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=29.9
Q ss_pred eEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHH-Hhch-hCCEEEEc
Q psy2575 77 FQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMF-GLIS-RVNKIIIG 125 (165)
Q Consensus 77 f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~-~~m~-~v~~VllG 125 (165)
.+|.++|.. -...+.+.|.+.|.++++++...-. .+.. +.|.++++
T Consensus 193 ~~I~viD~g---~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilS 240 (382)
T CHL00197 193 LKIIVIDFG---VKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLS 240 (382)
T ss_pred CEEEEEECC---cHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEc
Confidence 566666652 2356899999999999999865322 2221 45666664
No 473
>PRK06460 hypothetical protein; Provisional
Probab=41.33 E-value=2.4e+02 Score=24.49 Aligned_cols=60 Identities=3% Similarity=-0.076 Sum_probs=33.7
Q ss_pred HHHHhhcCCceEEEccc---hHHHhc-hhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 94 AVSLAKSKIQTVLIPDS---AMFGLI-SRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 94 a~~L~~~GI~v~~I~ds---av~~~m-~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+...|+++..++.. .+..+. ++...|++ ..---+.|.+... -.++-+|+++++++++
T Consensus 102 ~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l-~sp~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 102 TDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFV-ENITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred HHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEE-ECCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 34566778888877532 222222 23445555 2222345555544 2577888999988765
No 474
>PRK07505 hypothetical protein; Provisional
Probab=41.33 E-value=2.3e+02 Score=24.40 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHh----CCceEEEEecCCCCChHHH-HHHHHhhcCCceEEEccc-
Q psy2575 37 TSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQ----HRKFQCIVMENSPENKGHE-LAVSLAKSKIQTVLIPDS- 110 (165)
Q Consensus 37 ~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~----~~~f~ViV~Es~P~~eG~~-la~~L~~~GI~v~~I~ds- 110 (165)
..++..+..++++.. +.++..+.+...+..+.-+.. +.+-.|++.+. ...|-- ....+.+.+.++..++-.
T Consensus 92 ~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~--~~H~s~~~~~~~~~~~~~v~~~~~~d 168 (402)
T PRK07505 92 ILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDK--NAHASLNILKGICADETEVETIDHND 168 (402)
T ss_pred HHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEch--hhhHhHHhhhhhhhcCCeEEEeCCCC
Confidence 345555555566654 677666667677766654432 12334655542 122211 112223335566666422
Q ss_pred --hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 111 --AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 111 --av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
.+...+..-++.++=.+.+.+.|++.. -..+.-+|+++++++++
T Consensus 169 ~~~l~~~~~~~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~ 214 (402)
T PRK07505 169 LDALEDICKTNKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYI 214 (402)
T ss_pred HHHHHHHHhcCCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEE
Confidence 233333322344444566778887766 36677888999887765
No 475
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=41.26 E-value=2e+02 Score=26.53 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=52.8
Q ss_pred cCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccc-
Q psy2575 49 IHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTH- 127 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd- 127 (165)
.-.|.+|.++|++..=..+...++ +...+|++.|..|... ..+. ..|..+.. +..+++.+|.|++-+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~-a~Ga~ViV~e~dp~~a--~~A~---~~G~~~~~-----leell~~ADIVI~atGt 319 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALR-GFGARVVVTEIDPICA--LQAA---MEGYQVVT-----LEDVVETADIFVTATGN 319 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCCchhH--HHHH---hcCceecc-----HHHHHhcCCEEEECCCc
Confidence 346899999999975566666554 3556899998887642 1111 24654431 3345678888886331
Q ss_pred -eee--------cCCCeeehhcHHH
Q psy2575 128 -TVM--------ANGGLRSVCGTHA 143 (165)
Q Consensus 128 -~V~--------~nG~vvnk~GT~~ 143 (165)
.++ .+|+++-.+|-..
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 232 4777777777764
No 476
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=41.25 E-value=1.7e+02 Score=24.71 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=24.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHhhcCC-ceEEEcc
Q psy2575 76 KFQCIVMENSPENKGHELAVSLAKSKI-QTVLIPD 109 (165)
Q Consensus 76 ~f~ViV~Es~P~~eG~~la~~L~~~GI-~v~~I~d 109 (165)
+..|-.+|+.|..+ .+.++|++.|+ .|.+||.
T Consensus 169 ~v~v~~ve~yP~~d--~vi~~l~~~~~~~v~L~Pl 201 (265)
T COG4822 169 NVFVAAVEGYPLVD--TVIEYLRKNGIKEVHLIPL 201 (265)
T ss_pred ceEEEEecCCCcHH--HHHHHHHHcCCceEEEeee
Confidence 34555679999865 67999999997 4778775
No 477
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=41.23 E-value=2.3e+02 Score=24.23 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=58.5
Q ss_pred CCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCC---------C-----hH----HHHHHHHhhcC--CceEEEccc
Q psy2575 52 NEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPE---------N-----KG----HELAVSLAKSK--IQTVLIPDS 110 (165)
Q Consensus 52 ~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~---------~-----eG----~~la~~L~~~G--I~v~~I~ds 110 (165)
+..||..|-+..=.+++++... |-+ ++.+.|..+. + -| ...+++|++.+ ++++.....
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 4567778877665666665555 422 4445554431 0 02 23356666654 677766655
Q ss_pred hHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEe
Q psy2575 111 AMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTF 159 (165)
Q Consensus 111 av~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~ 159 (165)
-....+.+.|.|+...+.+ .=-..+.-+|+.+++|++...
T Consensus 98 ~~~~~l~~fdvVV~~~~~~---------~~~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 98 LTTDELLKFQVVVLTDASL---------EDQLKINEFCHSPGIKFISAD 137 (286)
T ss_pred CCHHHHhcCCEEEEecCCH---------HHHHHHHHHHHHcCCEEEEEe
Confidence 3445678899887765422 112345678899999999864
No 478
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=41.20 E-value=30 Score=26.96 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=39.8
Q ss_pred hhHHHhhhhccCCcccc-------CC---hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCC
Q psy2575 16 QESLHKLVVSSDDEATD-------FA---NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENS 85 (165)
Q Consensus 16 ~~sL~~~~~~~~~~~~d-------~~---~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~ 85 (165)
.+++++++..+.....+ |. ++.++++.+...++-..|..|..+|-|.--..+|....-+.++=.+++|..
T Consensus 22 ~~~v~~~l~~E~~~gl~~~~~y~~f~~~~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~n 101 (160)
T PF08484_consen 22 SASVARLLAEEKALGLNTIEYYENFAKRVEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDN 101 (160)
T ss_dssp H-HHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-
T ss_pred chHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCC
Confidence 46788887744432211 11 333555555555566789999999988654444444322445566788889
Q ss_pred CCChHHHH
Q psy2575 86 PENKGHEL 93 (165)
Q Consensus 86 P~~eG~~l 93 (165)
|..+|+-+
T Consensus 102 p~K~G~~~ 109 (160)
T PF08484_consen 102 PLKQGKYL 109 (160)
T ss_dssp GGGTTEE-
T ss_pred hhhcCccc
Confidence 99998655
No 479
>KOG0822|consensus
Probab=41.18 E-value=1e+02 Score=29.31 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=54.2
Q ss_pred HHHHHHHhcccCCC-----CEEEEe--cCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 39 DTAPSQACEHIHSN-----EIILTL--GYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 39 ~~Ia~~a~~~I~~~-----~~ILT~--g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
++|..-..+...+. .+||+. |+++.|.+.|+.|.+ .|+.++|.+|-.|.----..-+.....+=.||+|.-.
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~D 429 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSD 429 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEecc
Confidence 33444445565554 345555 678899999998887 7999999999999732111123344456678888866
Q ss_pred hHHHhch--hCCEEE
Q psy2575 111 AMFGLIS--RVNKII 123 (165)
Q Consensus 111 av~~~m~--~v~~Vl 123 (165)
+-.+--+ ++|..+
T Consensus 430 MR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 430 MRKWNAPREQADIIV 444 (649)
T ss_pred ccccCCchhhccchH
Confidence 6555543 355543
No 480
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=41.18 E-value=46 Score=26.54 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=34.6
Q ss_pred ceEEE-EecCC--C---CChHHHHHHHHhhcCCce---EEEccchHHHhchhCCEEEEc-cceeecCCC
Q psy2575 76 KFQCI-VMENS--P---ENKGHELAVSLAKSKIQT---VLIPDSAMFGLISRVNKIIIG-THTVMANGG 134 (165)
Q Consensus 76 ~f~Vi-V~Es~--P---~~eG~~la~~L~~~GI~v---~~I~dsav~~~m~~v~~VllG-Ad~V~~nG~ 134 (165)
++.|+ |.++| + ...|+.+...|.+.|.++ ++++|......- .....+-. +|.|+-+||
T Consensus 9 ~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~-~l~~~~~~~~DvvlttGG 76 (169)
T COG0521 9 RIAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRA-TLIALIDEDVDVVLTTGG 76 (169)
T ss_pred eEEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHH-HHHHHhcCCCCEEEEcCC
Confidence 35555 45665 2 347999999999999655 788887543221 11111112 666666665
No 481
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=41.12 E-value=1.9e+02 Score=23.33 Aligned_cols=95 Identities=13% Similarity=0.023 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHh----CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCe
Q psy2575 60 YSKIVELFLKNAAQ----HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGL 135 (165)
Q Consensus 60 ~S~tV~~~L~~A~~----~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~v 135 (165)
++.+.+..+..|++ ..++-|=|+=+. +|.+.++.|++.||+|....--.....+--+ -.||+-|.+.=+-
T Consensus 59 ~~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa---~AGA~yvsP~vgR 132 (211)
T cd00956 59 VSTDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEGIKTNVTAIFSAAQALLAA---KAGATYVSPFVGR 132 (211)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcCCceeeEEecCHHHHHHHH---HcCCCEEEEecCh
Confidence 34557777777776 122211133222 8999999999999987755544333332211 1266666654333
Q ss_pred eehhcH------HHHHHHHhhCCCcEEEEee
Q psy2575 136 RSVCGT------HAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 136 vnk~GT------~~lAl~Ak~~~vPv~V~~~ 160 (165)
+...|- ..+.-.++.++.|.=++++
T Consensus 133 ~~~~g~dg~~~i~~i~~~~~~~~~~tkil~A 163 (211)
T cd00956 133 IDDLGGDGMELIREIRTIFDNYGFDTKILAA 163 (211)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCCceEEec
Confidence 333332 2344556667767555443
No 482
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=41.09 E-value=2.1e+02 Score=24.69 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=46.2
Q ss_pred EEEecCCHHHHHHHHHHHhCCce-EEEEecCCCCChHHHHHHHHhhcCCceEEEc---cchHHHhchhCCEEEEccceee
Q psy2575 55 ILTLGYSKIVELFLKNAAQHRKF-QCIVMENSPENKGHELAVSLAKSKIQTVLIP---DSAMFGLISRVNKIIIGTHTVM 130 (165)
Q Consensus 55 ILT~g~S~tV~~~L~~A~~~~~f-~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~---dsav~~~m~~v~~VllGAd~V~ 130 (165)
|+.+|.+.+=..+.....+...+ +|++.+-.+.. ..+++..+...+++...+. ..++..+++++|.|+-.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~---- 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEK-AERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCA---- 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHH-HHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S----
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHH-HHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECC----
Confidence 56777766556666666655555 88888644331 1222322222233333222 334677888888877433
Q ss_pred cCCCeeehhcHHHHHHHHhhCCCcEE
Q psy2575 131 ANGGLRSVCGTHAVALAAQHYSIPYP 156 (165)
Q Consensus 131 ~nG~vvnk~GT~~lAl~Ak~~~vPv~ 156 (165)
.......++.+|-+.+++++
T Consensus 76 ------gp~~~~~v~~~~i~~g~~yv 95 (386)
T PF03435_consen 76 ------GPFFGEPVARACIEAGVHYV 95 (386)
T ss_dssp ------SGGGHHHHHHHHHHHT-EEE
T ss_pred ------ccchhHHHHHHHHHhCCCee
Confidence 11145567777777777654
No 483
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=41.08 E-value=2.2e+02 Score=24.02 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=71.0
Q ss_pred cccccccccchhhHHHhhhhccCCc-----cccC-ChHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceE
Q psy2575 5 IKSKSQEDDNYQESLHKLVVSSDDE-----ATDF-ANPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQ 78 (165)
Q Consensus 5 ~~~~~~~~~~~~~sL~~~~~~~~~~-----~~d~-~~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ 78 (165)
|..+.--.++-.+.++++-...++. ..|. .....++.-+..++++.-..+++|-|.+..+...+.... ++.-+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~-~~gd~ 85 (361)
T cd06452 7 IQRGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLC-EKGDW 85 (361)
T ss_pred hhcCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhc-CCCCE
Confidence 4444444555567777776433331 1121 111222333333444444456666665545444444332 34445
Q ss_pred EEEecCCCCChHHHHHHHHhhcCCceEEEccc----------hHHHhch--------hCCEEEEccceeecCCCeeehhc
Q psy2575 79 CIVMENSPENKGHELAVSLAKSKIQTVLIPDS----------AMFGLIS--------RVNKIIIGTHTVMANGGLRSVCG 140 (165)
Q Consensus 79 ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds----------av~~~m~--------~v~~VllGAd~V~~nG~vvnk~G 140 (165)
|++. +|...+.. ..+...|+++..++.. .+...+. +...|++. ..=.+.|.+ ..
T Consensus 86 Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~-~p~n~tG~~-~~-- 157 (361)
T cd06452 86 VVVD--GLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLT-HVDGNYGNL-HD-- 157 (361)
T ss_pred EEEc--CCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEE-CCCCCCeee-cc--
Confidence 6664 33332222 3466789888887522 1222232 34456553 211223322 22
Q ss_pred HHHHHHHHhhCCCcEEEE
Q psy2575 141 THAVALAAQHYSIPYPCT 158 (165)
Q Consensus 141 T~~lAl~Ak~~~vPv~V~ 158 (165)
-..++-+|+++++++++=
T Consensus 158 ~~~i~~~~~~~~~~vivD 175 (361)
T cd06452 158 AKKIAKVCHEYGVPLLLN 175 (361)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 246777899999998863
No 484
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=41.08 E-value=34 Score=27.53 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHhCCceEEEEecCCCCC
Q psy2575 61 SKIVELFLKNAAQHRKFQCIVMENSPEN 88 (165)
Q Consensus 61 S~tV~~~L~~A~~~~~f~ViV~Es~P~~ 88 (165)
|....+.|.++++ +..++.++=+||..
T Consensus 18 ~~~~~~~i~~l~~-~G~~~~iaTGR~~~ 44 (256)
T TIGR00099 18 SPSTKEALAKLRE-KGIKVVLATGRPYK 44 (256)
T ss_pred CHHHHHHHHHHHH-CCCeEEEEeCCCHH
Confidence 3334445555543 34566666666653
No 485
>PRK08354 putative aminotransferase; Provisional
Probab=41.04 E-value=2.1e+02 Score=23.74 Aligned_cols=111 Identities=12% Similarity=0.031 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc--hH
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS--AM 112 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds--av 112 (165)
...++.++++-- .++++|-|.+..+..++ .+.. +.-+|++.+ |.+.+... .++..|.++..++.. .+
T Consensus 43 ~~l~~~ia~~~~-----~~I~vt~G~~~al~~~~-~~~~-~gd~vlv~~--P~y~~~~~--~~~~~g~~~~~~~~d~~~l 111 (311)
T PRK08354 43 EWLEEEFSKLFG-----EPIVITAGITEALYLIG-ILAL-RDRKVIIPR--HTYGEYER--VARFFAARIIKGPNDPEKL 111 (311)
T ss_pred HHHHHHHHHHHC-----CCEEECCCHHHHHHHHH-HhhC-CCCeEEEeC--CCcHHHHH--HHHHcCCEEeecCCCHHHH
Confidence 445666665432 25667777666554433 3322 344566553 77765543 334577776655432 23
Q ss_pred HHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 113 FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 113 ~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+++...+++-.= =.+.|.++..---..++-.|+++++.+++
T Consensus 112 ~~~~~~~~~vi~~~P-~NPTG~~~~~~~l~~l~~~a~~~~~~li~ 155 (311)
T PRK08354 112 EELVERNSVVFFCNP-NNPDGKFYNFKELKPLLDAVEDRNALLIL 155 (311)
T ss_pred HHhhcCCCEEEEecC-CCCCCCccCHHHHHHHHHHhhhcCcEEEE
Confidence 233334444444211 14566666665567778888888877664
No 486
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=40.95 E-value=2.4e+02 Score=24.38 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=43.9
Q ss_pred CceEEEEecCCCCChHHHHHHHHhhcCCceEE--------------Ecc--chHHHhchhCCEEEEccceeecCCCeeeh
Q psy2575 75 RKFQCIVMENSPENKGHELAVSLAKSKIQTVL--------------IPD--SAMFGLISRVNKIIIGTHTVMANGGLRSV 138 (165)
Q Consensus 75 ~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~--------------I~d--sav~~~m~~v~~VllGAd~V~~nG~vvnk 138 (165)
.+++++++-..|.. ..++.+.+.+.|++... +.| ..+..++..+|.+++|..- .+.|+.
T Consensus 261 ~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~-~e~~g~--- 335 (425)
T PRK05749 261 PNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL-VKRGGH--- 335 (425)
T ss_pred CCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc-CCCCCC---
Confidence 56777776444432 23566667777875322 222 3678888999998886532 222222
Q ss_pred hcHHHHHHHHhhCCCcEEE
Q psy2575 139 CGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 139 ~GT~~lAl~Ak~~~vPv~V 157 (165)
..+=|-..++||++
T Consensus 336 -----~~lEAma~G~PVI~ 349 (425)
T PRK05749 336 -----NPLEPAAFGVPVIS 349 (425)
T ss_pred -----CHHHHHHhCCCEEE
Confidence 13567778999986
No 487
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=40.91 E-value=2.2e+02 Score=24.08 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEecCCHHHHHHHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccch---
Q psy2575 35 NPTSDTAPSQACEHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSA--- 111 (165)
Q Consensus 35 ~~~~~~Ia~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsa--- 111 (165)
...++.|+++- .+...++++|-|.+..+..++. +.. .. +|++. .|.+... ...+...|.++..++...
T Consensus 57 ~~lr~~ia~~~--~~~~~~i~it~Ga~~~l~~~~~-~~~-~~-~v~i~--~P~y~~~--~~~~~~~g~~~~~~~~~~~~~ 127 (354)
T PRK06358 57 LELRKRIASFE--QLDLENVILGNGATELIFNIVK-VTK-PK-KVLIL--APTFAEY--ERALKAFDAEIEYAELTEETN 127 (354)
T ss_pred HHHHHHHHHHh--CCChhhEEECCCHHHHHHHHHH-HhC-CC-cEEEe--cCChHHH--HHHHHHcCCeeEEEeCccccC
Confidence 46688888765 3566678888776655554444 333 22 55553 4554433 334456787777665211
Q ss_pred -------HHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEE
Q psy2575 112 -------MFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157 (165)
Q Consensus 112 -------v~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 157 (165)
...+.+++..+++- .-=-+-|.++.+-=-..++-.|+++++++++
T Consensus 128 ~~~d~~~~~~~~~~~~~v~~~-~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 128 FAANEIVLEEIKEEIDLVFLC-NPNNPTGQLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred CCccHHHHHhhccCCCEEEEe-CCCCCCCCccCHHHHHHHHHHHHhcCCEEEE
Confidence 11122334444442 1113445555544455677788889887764
No 488
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=40.72 E-value=72 Score=26.05 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=40.7
Q ss_pred HHHhcccCCCCEEEEecCCHHHHHHHHHHHh-CC----ceEEEEecCCCCChHHHHHHHHhhcCCceEEEcc
Q psy2575 43 SQACEHIHSNEIILTLGYSKIVELFLKNAAQ-HR----KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPD 109 (165)
Q Consensus 43 ~~a~~~I~~~~~ILT~g~S~tV~~~L~~A~~-~~----~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~d 109 (165)
......+...|-|+..|.. .|+.|+....+ ++ ..+++++ |...++.|+++|+.+.++++
T Consensus 42 ~~~l~~l~~~d~vvfTS~~-av~~~~~~l~~~~~~~~~~~~i~aV-------G~~Ta~~l~~~G~~~~~~p~ 105 (248)
T COG1587 42 EVALEDLDSADWVVFTSPN-AVRFFFEALKEQGLDALKNKKIAAV-------GEKTAEALRKLGIKVDFIPE 105 (248)
T ss_pred HHHHhccccCCEEEEECHH-HHHHHHHHHHhhcccccccCeEEEE-------cHHHHHHHHHhCCCCCcCCC
Confidence 3444445555555544443 57777777766 32 3566666 89999999999999999987
No 489
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=40.68 E-value=62 Score=28.09 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=37.9
Q ss_pred hcccCCC-CEEEEecCCHHHHHHHHHHHh-C----------CceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 46 CEHIHSN-EIILTLGYSKIVELFLKNAAQ-H----------RKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 46 ~~~I~~~-~~ILT~g~S~tV~~~L~~A~~-~----------~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
.+.+.++ --++++..+++|+.|+....+ + .+.+++++ |...++.|.+.|+++ .+++.
T Consensus 194 ~~~l~~~~~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~~i~aI-------Gp~Ta~al~~~G~~~-~vp~~ 262 (381)
T PRK07239 194 VDAIASRGLDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDVLAACV-------GPVTAAPLVRAGVPT-SAPER 262 (381)
T ss_pred HHHHHcCCccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCCEEEEE-------CHHHHHHHHHcCCCc-cCCCC
Confidence 3445544 244555557799999876643 1 23456666 888999999999987 45653
No 490
>PTZ00175 diphthine synthase; Provisional
Probab=40.67 E-value=1e+02 Score=26.09 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=34.0
Q ss_pred HHHHHHHhCCceEEEEecCCCCC--hHHHHHHHHhhcCCceEEEccchHHHhc
Q psy2575 66 LFLKNAAQHRKFQCIVMENSPEN--KGHELAVSLAKSKIQTVLIPDSAMFGLI 116 (165)
Q Consensus 66 ~~L~~A~~~~~f~ViV~Es~P~~--eG~~la~~L~~~GI~v~~I~dsav~~~m 116 (165)
.++..++ +++ -|++.-..|.. .+..+..++.+.||++++||-.++...+
T Consensus 69 ~ii~~a~-~~~-Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~ 119 (270)
T PTZ00175 69 EILEEAK-EKN-VAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAI 119 (270)
T ss_pred HHHHHhC-CCC-EEEEECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHH
Confidence 3444443 444 56666888864 5677889999999999999965554443
No 491
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=40.53 E-value=2e+02 Score=24.04 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=38.7
Q ss_pred cCCCCEEEEecCCHHHHHHHHHHHh-CCceEEEEecCCCCChHHHHHHHHhhcCCceEEEccc
Q psy2575 49 IHSNEIILTLGYSKIVELFLKNAAQ-HRKFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDS 110 (165)
Q Consensus 49 I~~~~~ILT~g~S~tV~~~L~~A~~-~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~ds 110 (165)
+.+|++|.+.|.+..-..+=..|+. |.+.+|++.++.|. .-...++..|-+++.+..+
T Consensus 55 ~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~----~k~~~~~~~GA~v~~~~~~ 113 (299)
T TIGR01136 55 LKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSL----ERRKLLRAYGAELILTPAE 113 (299)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCH----HHHHHHHHcCCEEEEeCCC
Confidence 4567888888888766554444444 78889999887663 1234566677777766543
No 492
>PRK04296 thymidine kinase; Provisional
Probab=40.47 E-value=1.2e+02 Score=23.73 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=37.0
Q ss_pred CCceEEEEecCCCCChH---HHHHHHHhhcCCceEEEccc---------hHHHhchhCCEEE
Q psy2575 74 HRKFQCIVMENSPENKG---HELAVSLAKSKIQTVLIPDS---------AMFGLISRVNKII 123 (165)
Q Consensus 74 ~~~f~ViV~Es~P~~eG---~~la~~L~~~GI~v~~I~ds---------av~~~m~~v~~Vl 123 (165)
..++.|+++|......- .++.+.|+..|+.|.+.... ....+++.+|.|.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 34677888887776532 35678888899999888776 7778888888775
No 493
>PF03320 FBPase_glpX: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; InterPro: IPR004464 Gluconeogenesis is an important metabolic pathway, which produces glucose from noncarbohydrate precursors such as organic acids, fatty acids, amino acids, or glycerol. Fructose-1,6-bisphosphatase, a key enzyme of gluconeogenesis, is found in all organisms, and five different classes of these enzymes have been identified. This entry represents the class 2 fructose-1,6-bisphosphatases, which include GlpX and YggF of Escherichia coli (strain K12), which show different catalytic properties. The crystal structure of GlpX has been determined in a free state and in the complex with a substrate (fructose 1,6-bisphosphate) or inhibitor (phosphate). The crystal structure of the ligand-free GlpX revealed a compact, globular shape with two alpha/beta-sandwich domains. The core fold of GlpX is structurally similar to that of Li+-sensitive phosphatases suggesting that they have a common evolutionary origin and catalytic mechanism. The structure of the GlpX complex with fructose 1,6-bisphosphate revealed that the active site is located between two domains and accommodates several conserved residues coordinating two metal ions and the substrate. A third metal ion is bound to phosphate 6 of the substrate. Inorganic phosphate strongly inhibited activity of both GlpX and YggF, and the crystal structure of the GlpX complex with phosphate demonstrated that the inhibitor molecule binds to the active site. Alanine replacement mutagenesis of GlpX identifies 12 conserved residues important for activity and suggested that Thr(90) is the primary catalytic residue []. A number of the proteins in this entry, particularly those from algae are bi functional and can catalyzes the hydrolysis of fructose 1,6-bisphosphate and sedoheptulose 1,7-bisphosphate to fructose 6-phosphate and sedoheptulose 7-phosphate, respectively. ; GO: 0006071 glycerol metabolic process; PDB: 3RPL_C 3ROJ_A 3D1R_A 2R8T_A 3BIH_A 3BIG_A 1NI9_A.
Probab=40.47 E-value=42 Score=29.31 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=29.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCceEEEccchHHHhch
Q psy2575 76 KFQCIVMENSPENKGHELAVSLAKSKIQTVLIPDSAMFGLIS 117 (165)
Q Consensus 76 ~f~ViV~Es~P~~eG~~la~~L~~~GI~v~~I~dsav~~~m~ 117 (165)
.++|.|+| ||+.+ ++.+++++.|..+.+|+|.-+...+.
T Consensus 155 dltV~vLd-RpRH~--~lI~eiR~~Garv~Li~DGDVa~ai~ 193 (309)
T PF03320_consen 155 DLTVVVLD-RPRHE--ELIEEIREAGARVKLISDGDVAGAIA 193 (309)
T ss_dssp G-EEEEE--SGGGH--HHHHHHHHCT-EEEEESS-HHHHHHH
T ss_pred HeEEEEEc-CchHH--HHHHHHHHcCCeEEEeCcCcHHHHHH
Confidence 46777665 78765 79999999999999999998877664
No 494
>PRK10976 putative hydrolase; Provisional
Probab=40.46 E-value=31 Score=27.92 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHhCCceEEEEecCCCCCh
Q psy2575 61 SKIVELFLKNAAQHRKFQCIVMENSPENK 89 (165)
Q Consensus 61 S~tV~~~L~~A~~~~~f~ViV~Es~P~~e 89 (165)
|+...+.|.++++ +..++.++=+||...
T Consensus 21 s~~~~~ai~~l~~-~G~~~~iaTGR~~~~ 48 (266)
T PRK10976 21 SPYAKETLKLLTA-RGIHFVFATGRHHVD 48 (266)
T ss_pred CHHHHHHHHHHHH-CCCEEEEEcCCChHH
Confidence 3334555555554 456666777777654
No 495
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=40.46 E-value=2.2e+02 Score=24.31 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=58.8
Q ss_pred HHHHhccc--CCCCEEEEecCCHHHHHHHHHHHhCCceE-EEEecCCCCChHHHHHHHHhh-cCCceEEEccchHHHhch
Q psy2575 42 PSQACEHI--HSNEIILTLGYSKIVELFLKNAAQHRKFQ-CIVMENSPENKGHELAVSLAK-SKIQTVLIPDSAMFGLIS 117 (165)
Q Consensus 42 a~~a~~~I--~~~~~ILT~g~S~tV~~~L~~A~~~~~f~-ViV~Es~P~~eG~~la~~L~~-~GI~v~~I~dsav~~~m~ 117 (165)
...+..++ .+..+++.+|.+...+..+......++++ |.|. +|-......+++++.+ .|+++.... .+...+.
T Consensus 117 ~~laa~~la~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~-~R~~~~a~~~a~~~~~~~g~~v~~~~--~~~~av~ 193 (326)
T TIGR02992 117 GAVAARHLAREDSSVVAIFGAGMQARLQLEALTLVRDIRSARIW-ARDSAKAEALALQLSSLLGIDVTAAT--DPRAAMS 193 (326)
T ss_pred HHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeC--CHHHHhc
Confidence 33334444 35668999999977766665444334443 5555 4444456778888865 477665443 3455667
Q ss_pred hCCEEEEccce--------eecCCCeeehhcH
Q psy2575 118 RVNKIIIGTHT--------VMANGGLRSVCGT 141 (165)
Q Consensus 118 ~v~~VllGAd~--------V~~nG~vvnk~GT 141 (165)
++|.|+...-+ .+..|..++.+|+
T Consensus 194 ~aDiVvtaT~s~~p~i~~~~l~~g~~i~~vg~ 225 (326)
T TIGR02992 194 GADIIVTTTPSETPILHAEWLEPGQHVTAMGS 225 (326)
T ss_pred cCCEEEEecCCCCcEecHHHcCCCcEEEeeCC
Confidence 89998864422 2346777777774
No 496
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=40.38 E-value=69 Score=29.25 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhcCCceEEEccchHHHhchhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEee
Q psy2575 89 KGHELAVSLAKSKIQTVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFL 160 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~dsav~~~m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~ 160 (165)
-|.++++.|.+.| ||.|||-+-| +..+++|+.+.=-+=+ .++|+...|-
T Consensus 324 ~g~eIa~~Lk~dg-----------------VDAVILTstC-----gtC~r~~a~m~keiE~-~GiPvv~~~~ 372 (431)
T TIGR01918 324 FAKEFVVELKQGG-----------------VDAVILTSTU-----GTCTRCGATMVKEIER-AGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHcC-----------------CCEEEEcCCC-----CcchhHHHHHHHHHHH-cCCCEEEEee
Confidence 4666777777764 5666665444 6788888876544444 8899998775
No 497
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=40.27 E-value=1.5e+02 Score=24.82 Aligned_cols=66 Identities=14% Similarity=0.032 Sum_probs=46.7
Q ss_pred hHHHHHHHHhhcCCceEEEccchHHHh----chhCCEEEEccceeecCCCeeehhcHHHHHHHHhhCCCcEEEEeec
Q psy2575 89 KGHELAVSLAKSKIQTVLIPDSAMFGL----ISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPCTFLL 161 (165)
Q Consensus 89 eG~~la~~L~~~GI~v~~I~dsav~~~----m~~v~~VllGAd~V~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~~~~ 161 (165)
-+..+..+|...|+++.++.|....+. |..=|.+|.=+ -.| ..-=+..++..||+.++|++.++..
T Consensus 144 vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS----~sG---~t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 144 VASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAIS----FSG---YTREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred HHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEe----CCC---CcHHHHHHHHHHHHCCCcEEEEcCC
Confidence 346778999999999999999998872 23345554322 122 1233567889999999999998754
No 498
>PRK14368 Maf-like protein; Provisional
Probab=40.26 E-value=1.9e+02 Score=23.17 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=55.2
Q ss_pred EEEEecCCHHHHHHHHHHHhCCceEEEEe---cCCCCC-hHHHHHHHHhhcCCceEEEccchHHHhch-hCCEEEEccce
Q psy2575 54 IILTLGYSKIVELFLKNAAQHRKFQCIVM---ENSPEN-KGHELAVSLAKSKIQTVLIPDSAMFGLIS-RVNKIIIGTHT 128 (165)
Q Consensus 54 ~ILT~g~S~tV~~~L~~A~~~~~f~ViV~---Es~P~~-eG~~la~~L~~~GI~v~~I~dsav~~~m~-~v~~VllGAd~ 128 (165)
.|+--|.|+.=.++|..+ +-+|+++.. |+.+.. .-.+++.+|+... ...+.+ .-+.+++|||.
T Consensus 6 ~lILAS~SprR~eLL~~~--g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~K----------A~~v~~~~~~~~vI~aDT 73 (193)
T PRK14368 6 PIVLASASPRRSELLASA--GIEFDVVPADIPEEPLPGEEPVDHVLRLAREK----------ARAAAALAEGRFFIGADT 73 (193)
T ss_pred cEEEeCCCHHHHHHHHHC--CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCEEEEeCc
Confidence 344456666545566544 678987744 433332 2345677666543 111111 23679999999
Q ss_pred e-ecCCCeeehhcHHHHH--HHHhhCCCcEEEE
Q psy2575 129 V-MANGGLRSVCGTHAVA--LAAQHYSIPYPCT 158 (165)
Q Consensus 129 V-~~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ 158 (165)
| .-||.++.|-.+..=| ++-+..+.+.-|.
T Consensus 74 vV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~v~ 106 (193)
T PRK14368 74 IVVCDGEIMGKPKDEADAVRMLKKLSGVPHEVI 106 (193)
T ss_pred EEEECCEEecCCCCHHHHHHHHHHhCCCCcEEE
Confidence 4 4799999999987655 4444455554443
No 499
>PRK12828 short chain dehydrogenase; Provisional
Probab=40.25 E-value=1.7e+02 Score=22.42 Aligned_cols=52 Identities=6% Similarity=-0.010 Sum_probs=29.0
Q ss_pred CCCEEEEecCCHHHHH-HHHHHHhCCceEEEEecCCCCChHHHHHHHHhhcCCce
Q psy2575 51 SNEIILTLGYSKIVEL-FLKNAAQHRKFQCIVMENSPENKGHELAVSLAKSKIQT 104 (165)
Q Consensus 51 ~~~~ILT~g~S~tV~~-~L~~A~~~~~f~ViV~Es~P~~eG~~la~~L~~~GI~v 104 (165)
.+.+|+..|-+..+=. +.....+ +..+|+++...|... .+....+...+...
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~-~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~ 58 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAA-RGARVALIGRGAAPL-SQTLPGVPADALRI 58 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHH-CCCeEEEEeCChHhH-HHHHHHHhhcCceE
Confidence 3678888887765533 3333333 456788887655432 23444555555443
No 500
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=40.24 E-value=1.4e+02 Score=24.06 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCceEEEEecCCCCC--hHHHHHHHHhhcCCceEEEc-cchHHHhchh
Q psy2575 62 KIVELFLKNAAQHRKFQCIVMENSPEN--KGHELAVSLAKSKIQTVLIP-DSAMFGLISR 118 (165)
Q Consensus 62 ~tV~~~L~~A~~~~~f~ViV~Es~P~~--eG~~la~~L~~~GI~v~~I~-dsav~~~m~~ 118 (165)
..++.+...+.++++ -+++..+.|.. .+..+.+.+.+.|++++.|| -|++.++..+
T Consensus 78 ~~~~~i~~~~~~g~~-V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~ 136 (229)
T PRK05576 78 ENAEEIAAEAEEGKN-VAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASR 136 (229)
T ss_pred HHHHHHHHHHHcCCc-EEEEeCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHH
Done!